Citrus Sinensis ID: 015217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccccccEEcccccHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHcccccccEEEEEcccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHccccEEEEEHHHcHHHHHHHHcccccEEEEEccccHHHHHHHccccccccEEEEEEccccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHcccccccEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHcccccccEEEEEcccccccccccccccHHHHHHHHHHHHccccccccEEEEccccHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccccEEEEEccccccEEcccccccHHHHHHHHHHHHccccccccccccccEEEEccccccccEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
MRRSQLLVILTIFSFFArfnlsdalygssspvvqltpnnfkskvlnanGVVLVEfyapwcghcqaLTPIWEKAATVLKGVATVAALDANEHQSLAQeygirgfptikvfvpgkppvdyqgardvkPIAEFALQQIKALLKERlsgkatggssdksksdsnesielnssnfDELVLKSKDLWIVEFFapwcghckkLAPEWKKAANNLkgkvklghvdcdsekslmskfnvqgfptilvfgadkdspipyegartagAIESFALEqletnvappevteltsqdvmeekCGSAAICFYLEMLLSVAEKFKRGHYSFVWaaagkqpdlenrvgvggygyPALVALNVkkgvytplkSAFELEHIVEFVKEagrggkgnlpldgtpsivktepwdgkdgqiieedeFSLDELMAE
Flexible Loop (DISEMBL)
MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKErlsgkatggssdksksdsnesielnssnfDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWaaagkqpdlenRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKeagrggkgnlpldgtpsivktepwdgkdgqiieedefsldelmae
Low Complexity Region (SEG)
MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATggssdksksdsNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE
Disordered region (IsUnstruct)
*****LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL******************************FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLET*************DVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAG******************************************
Disordered Region (DISOPRED)
****QLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP*******RDVKPIAEFALQQIKA************************SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK*************EHIVEFVKEAG******************EPWDGKDGQIIEEDEFSLDELMAE
Disordered Region (DISEMBL)
MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL********************ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE
Disordered Region (DISPRO)
MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA**********************NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q67UF5	441	Protein disulfide isomera	yes	no	0.944	0.879	0.761	0.0
Q9MAU6	447	Protein disulfide-isomera	yes	no	0.992	0.912	0.703	0.0
O48773	440	Protein disulfide-isomera	no	no	0.961	0.897	0.717	1e-176
Q5R6T1	440	Protein disulfide-isomera	yes	no	0.970	0.906	0.433	7e-96
Q15084	440	Protein disulfide-isomera	yes	no	0.970	0.906	0.431	2e-95
Q922R8	440	Protein disulfide-isomera	yes	no	0.975	0.911	0.424	5e-95
P38660	439	Protein disulfide-isomera	N/A	no	0.946	0.886	0.434	2e-94
Q63081	440	Protein disulfide-isomera	yes	no	0.975	0.911	0.422	3e-94
Q11067	440	Probable protein disulfid	yes	no	0.914	0.854	0.434	2e-87
P34329	618	Probable protein disulfid	no	no	0.579	0.385	0.377	9e-39

>sp|Q67UF5|PDI23_ORYSJ Protein disulfide isomerase-like 2-3 OS=Oryza sativa subsp. japonica GN=PDIL2-3 PE=2 SV=1

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/411 (76%), Positives = 349/411 (84%), Gaps = 23/411 (5%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           ALY + SPV+Q  PNNFKSKVLN+NGVVLVEF+APWCGHCQ LTPIWEKAA VLKGVATV
Sbjct: 23  ALYSAGSPVLQFNPNNFKSKVLNSNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGVATV 82

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
           AALDA+ H+ LAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI EFAL Q+KALL++RL
Sbjct: 83  AALDADAHKELAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIVEFALSQVKALLRDRL 142

Query: 144 SGKATGGSSDK------SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLA 197
           +GK + GS  K       K++ + SIELNS NFD+LV KSKDLWIVEFFAPWCGHCKKLA
Sbjct: 143 NGKTSAGSGGKKSGGSSEKTEPSASIELNSQNFDKLVTKSKDLWIVEFFAPWCGHCKKLA 202

Query: 198 PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
           PEWKKAA NLKG+VKLGHVDCD+EKSLMSK+ V+GFPTILVFGADK+SP PY+GAR A A
Sbjct: 203 PEWKKAAKNLKGQVKLGHVDCDAEKSLMSKYKVEGFPTILVFGADKESPFPYQGARVASA 262

Query: 258 IESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------------YLEML 300
           IESFALEQLE N APPEV+ELT  D MEEKC SAAICF                 YLE+L
Sbjct: 263 IESFALEQLEANAAPPEVSELTGPDAMEEKCASAAICFVSFLPDILDSKAEGRNKYLELL 322

Query: 301 LSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEH 360
           LSVAEKFK+  YSFVW AAGKQ DLE +VGVGGYGYPA+VALNVKKG Y PL+SAF+L+ 
Sbjct: 323 LSVAEKFKKSPYSFVWTAAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRSAFQLDE 382

Query: 361 IVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE 411
           I EFVKEAGRGGKGNLPLDGTP+IV++EPWDGKDG++IEEDEFSL+ELMA+
Sbjct: 383 ITEFVKEAGRGGKGNLPLDGTPTIVQSEPWDGKDGEVIEEDEFSLEELMAD 433

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q9MAU6|PDI22_ARATH Protein disulfide-isomerase like 2-2 OS=Arabidopsis thaliana GN=PDIL2-2 PE=2 SV=2

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/432 (70%), Positives = 361/432 (83%), Gaps = 24/432 (5%)

Query: 1   MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWC 60
           M +S +  I  +   FA F+  +ALYGSSSPV+QLTP+NFKSKVLN+NGVVLVEF+APWC
Sbjct: 5   MYKSTVFPICCLL--FALFDRGNALYGSSSPVLQLTPSNFKSKVLNSNGVVLVEFFAPWC 62

Query: 61  GHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG 120
           GHCQ+LTP WEK A+ LKG+ATVAA+DA+ H+S++Q+YG+RGFPTIKVFVPGKPP+DYQG
Sbjct: 63  GHCQSLTPTWEKVASTLKGIATVAAIDADAHKSVSQDYGVRGFPTIKVFVPGKPPIDYQG 122

Query: 121 ARDVKPIAEFALQQIKALLKERLSGKATG-----GSSDKSKSDSNESIELNSSNFDELVL 175
           ARD K I++FA++QIKALLK+RL GK +G     GSS+K KS+ + S+ELNSSNFDELV 
Sbjct: 123 ARDAKSISQFAIKQIKALLKDRLDGKTSGTKNGGGSSEKKKSEPSASVELNSSNFDELVT 182

Query: 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235
           +SK+LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV+CD+E+S+ S+F VQGFPT
Sbjct: 183 ESKELWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVNCDAEQSIKSRFKVQGFPT 242

Query: 236 ILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF 295
           ILVFG+DK SP+PYEGAR+A AIESFALEQLE+N  P EVTELT  DVME+KCGSAAICF
Sbjct: 243 ILVFGSDKSSPVPYEGARSASAIESFALEQLESNAGPAEVTELTGPDVMEDKCGSAAICF 302

Query: 296 -----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPA 338
                            YLEMLLSVA+KFK+  Y FVW AAGKQPDLE RVGVGGYGYPA
Sbjct: 303 VSFLPDILDSKAEGRNKYLEMLLSVADKFKKDPYGFVWVAAGKQPDLEKRVGVGGYGYPA 362

Query: 339 LVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQII 398
           +VALN KKG Y PLKS FE++H+ +FVKEA +GGKGNLP+DGT  IVKTE WDGKDG+++
Sbjct: 363 MVALNAKKGAYAPLKSGFEVKHLKDFVKEAAKGGKGNLPIDGTMEIVKTEAWDGKDGEVV 422

Query: 399 EEDEFSLDELMA 410
           + DEFSL++LM 
Sbjct: 423 DADEFSLEDLMG 434

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|O48773|PDI23_ARATH Protein disulfide-isomerase 2-3 OS=Arabidopsis thaliana GN=PDIL2-3 PE=2 SV=1

 Score =  617 bits (1590), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/414 (71%), Positives = 345/414 (83%), Gaps = 19/414 (4%)

Query: 16  FARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAAT 75
           F  F+LS ALYGSSSPVVQLT +NFKSKVLN+NGVVLVEF+APWCGHC+ALTP WEK A 
Sbjct: 16  FGFFDLSSALYGSSSPVVQLTASNFKSKVLNSNGVVLVEFFAPWCGHCKALTPTWEKVAN 75

Query: 76  VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
           +LKGVATVAA+DA+ HQS AQ+YGI+GFPTIKVFVPGK P+DYQGARD K IA FA +QI
Sbjct: 76  ILKGVATVAAIDADAHQSAAQDYGIKGFPTIKVFVPGKAPIDYQGARDAKSIANFAYKQI 135

Query: 136 KALLKERLSGKA--TGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHC 193
           K LL +RL GK+  TGG S + KS+ + S+ELN+SNFD+LV++S +LWIVEFFAPWCGHC
Sbjct: 136 KGLLSDRLEGKSKPTGGGSKEKKSEPSASVELNASNFDDLVIESNELWIVEFFAPWCGHC 195

Query: 194 KKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253
           KKLAPEWK+AA NL+GKVKLGHV+CD E+S+MS+F VQGFPTILVFG DK SP PYEGAR
Sbjct: 196 KKLAPEWKRAAKNLQGKVKLGHVNCDVEQSIMSRFKVQGFPTILVFGPDKSSPYPYEGAR 255

Query: 254 TAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------------Y 296
           +A AIESFA E +E++  P EVTELT  DVME+KCGSAAICF                 Y
Sbjct: 256 SASAIESFASELVESSAGPVEVTELTGPDVMEKKCGSAAICFISFLPDILDSKAEGRNKY 315

Query: 297 LEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAF 356
           LEMLLSVAEKFK+  YSF+W AA  Q DLE RV VGGYGYPA+VA+NVKKGVY PLKSAF
Sbjct: 316 LEMLLSVAEKFKKQPYSFMWVAAVTQMDLEKRVNVGGYGYPAMVAMNVKKGVYAPLKSAF 375

Query: 357 ELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMA 410
           EL+H++EFVK+AG GGKGN+P++GTP IVKT+ WDGKDG++IEEDEFSLDELM 
Sbjct: 376 ELQHLLEFVKDAGTGGKGNVPMNGTPEIVKTKEWDGKDGELIEEDEFSLDELMG 429

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R6T1|PDIA6_PONAB Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1

 Score =  351 bits (900), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 187/431 (43%), Positives = 270/431 (62%), Gaps = 32/431 (7%)

Query: 6   LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQA 65
           L++ L   +FF   N    LY SS  V++LTP+NF  +V+ ++ + LVEFYAPWCGHCQ 
Sbjct: 4   LVLGLVSCAFFLEVN---GLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQR 60

Query: 66  LTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDV 124
           LTP W+KAAT LK V  V A+DA++H SL  +YG++GFPTIK+F   K  P DYQG R  
Sbjct: 61  LTPEWKKAATALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTG 120

Query: 125 KPIAEFALQQIKALLKERLSGKATGGSSDKS-KSDSN---ESIELNSSNFDELVLKSKDL 180
           + I + AL  ++ L+K+RL G++ G SS K  +SDS+   + IEL   +FD+ VL S+D+
Sbjct: 121 EAIVDAALSALRQLVKDRLGGQSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDV 180

Query: 181 WIVEFFAPWCGHCKKLAPEWKKAANNL----KGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           W+VEF+APWCGHCK L PEW  AA+ +    KGKVKL  VD    + L S++ ++GFPTI
Sbjct: 181 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 240

Query: 237 LVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF- 295
            +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ S+D+ +  C    +C  
Sbjct: 241 KIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAKRTCEEHQLCVV 299

Query: 296 ----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPAL 339
                           YLE+LL +A+K+K+  + ++W  AG Q +LE  +G+GG+GYPA+
Sbjct: 300 SVLPHILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAM 359

Query: 340 VALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGT--PSIVKTEPWDGKDGQI 397
            A+N +K  +  LK +F  + I EF++E   G     P+ G   P+IV+ EPWDG+DG++
Sbjct: 360 AAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGEL 419

Query: 398 IEEDEFSLDEL 408
             ED+  L ++
Sbjct: 420 PVEDDIDLSDV 430

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1

 Score =  350 bits (897), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/431 (43%), Positives = 270/431 (62%), Gaps = 32/431 (7%)

Query: 6   LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQA 65
           L++ L   +FF   N    LY SS  V++LTP+NF  +V+ ++ + LVEFYAPWCGHCQ 
Sbjct: 4   LVLGLVSCTFFLAVN---GLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQR 60

Query: 66  LTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDV 124
           LTP W+KAAT LK V  V A+DA++H SL  +YG++GFPTIK+F   K  P DYQG R  
Sbjct: 61  LTPEWKKAATALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTG 120

Query: 125 KPIAEFALQQIKALLKERLSGKATGGSSDKS-KSDSN---ESIELNSSNFDELVLKSKDL 180
           + I + AL  ++ L+K+RL G++ G SS K  +SDS+   + IEL   +FD+ VL S+D+
Sbjct: 121 EAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDV 180

Query: 181 WIVEFFAPWCGHCKKLAPEWKKAANNL----KGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           W+VEF+APWCGHCK L PEW  AA+ +    KGKVKL  VD    + L S++ ++GFPTI
Sbjct: 181 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 240

Query: 237 LVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF- 295
            +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ ++D+ +  C    +C  
Sbjct: 241 KIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVV 299

Query: 296 ----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPAL 339
                           YLE+LL +A+K+K+  + ++W  AG Q +LE  +G+GG+GYPA+
Sbjct: 300 AVLPHILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAM 359

Query: 340 VALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGT--PSIVKTEPWDGKDGQI 397
            A+N +K  +  LK +F  + I EF++E   G     P+ G   P+IV+ EPWDG+DG++
Sbjct: 360 AAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGEL 419

Query: 398 IEEDEFSLDEL 408
             ED+  L ++
Sbjct: 420 PVEDDIDLSDV 430

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q922R8|PDIA6_MOUSE Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3

 Score =  348 bits (893), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 184/433 (42%), Positives = 268/433 (61%), Gaps = 32/433 (7%)

Query: 4   SQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHC 63
           ++L++ L   +FF   +    LY SS  V++LTP+NF  +V+ ++G+ LVEFYAPWCGHC
Sbjct: 2   ARLVLGLVSCTFFLAVS---GLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHC 58

Query: 64  QALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGAR 122
           Q LTP W+KAAT LK V  V A++A++HQSL  +YG++GFPTIK+F   K  P DYQG R
Sbjct: 59  QRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGR 118

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDK----SKSDSNESIELNSSNFDELVLKSK 178
             + I + AL  ++ L+K+RL G++ G SS K      S   + +EL    FD+ VL S+
Sbjct: 119 TGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSE 178

Query: 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNL----KGKVKLGHVDCDSEKSLMSKFNVQGFP 234
           D+W+VEF+APWCGHCK L PEW  AA  +    KGKVKL  VD    + L S++ ++GFP
Sbjct: 179 DVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFP 238

Query: 235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAIC 294
           TI +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ ++D+ ++ C    +C
Sbjct: 239 TIKIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLC 297

Query: 295 F-----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYP 337
                             YLE+LL +A+K+K+  + ++W  AG Q +LEN +G+GG+GYP
Sbjct: 298 VVAVLPHILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYP 357

Query: 338 ALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGT--PSIVKTEPWDGKDG 395
           A+ A+N +K  +  LK +F  + I EF++E   G     P+ G   P+I   EPWDGKDG
Sbjct: 358 AMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITPREPWDGKDG 417

Query: 396 QIIEEDEFSLDEL 408
           ++  ED+  L ++
Sbjct: 418 ELPVEDDIDLSDV 430

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P38660|PDIA6_MESAU Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1

 Score =  346 bits (888), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/417 (43%), Positives = 258/417 (61%), Gaps = 28/417 (6%)

Query: 19  FNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK 78
           F  +  LY SS  V++LTP+NF  +V+ +N + LVEFYAPWCGHCQ LTP W+KAAT LK
Sbjct: 14  FLAASGLYSSSDDVIELTPSNFNREVIQSNSLWLVEFYAPWCGHCQRLTPEWKKAATALK 73

Query: 79  GVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDVKPIAEFALQQIKA 137
            V  V A+DA++HQSL  +YG++GFPTIK+F   K  P DYQG R  + I + AL  ++ 
Sbjct: 74  DVVKVGAVDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQ 133

Query: 138 LLKERLSGKATGGSSDK----SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHC 193
           L+K+RLSG++ G SS K      S   + IEL    FD+ VL S D+W+VEF+APWCGHC
Sbjct: 134 LVKDRLSGRSGGYSSGKQGRGDSSSKKDVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHC 193

Query: 194 KKLAPEWKKAANNL----KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY 249
           K L PEW  AA  +    KGKVKL  VD    + L +++ ++GFPTI +F    ++P+ Y
Sbjct: 194 KNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIF-QKGEAPVDY 252

Query: 250 EGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-------------- 295
           +G RT   I S AL+    N  PPE+ E+ ++DV ++ C    +C               
Sbjct: 253 DGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAKKMCEEHQLCVVAVLPHILDTGAAR 312

Query: 296 --YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLK 353
             YLE+LL +A+K+K+  + ++W  AG Q +LEN +G+GG+GYPA+  +N +K  +  LK
Sbjct: 313 NSYLEILLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMARINARKMKFALLK 372

Query: 354 SAFELEHIVEFVKEAGRGGKGNLPLDGT--PSIVKTEPWDGKDGQIIEEDEFSLDEL 408
            +F  + I EF++E   G     P+ G   P+I   EPWDG+DG++  ED+  L ++
Sbjct: 373 GSFSEQGINEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGELPVEDDIDLSDV 429

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Mesocricetus auratus (taxid: 10036)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2

 Score =  345 bits (886), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/433 (42%), Positives = 268/433 (61%), Gaps = 32/433 (7%)

Query: 4   SQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHC 63
           ++L++ L   +FF   +   ALY SS  V++LTP+NF  +V+ ++ + LVEFYAPWCGHC
Sbjct: 2   ARLVLGLVSCTFFLAVS---ALYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHC 58

Query: 64  QALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGAR 122
           Q LTP W+KAA+ LK V  V A++A++HQSL  +YG++GFPTIK+F   K  P DYQG R
Sbjct: 59  QRLTPEWKKAASALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGR 118

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDK----SKSDSNESIELNSSNFDELVLKSK 178
             + I + AL  ++ L+K+RL G++ G SS K      S   + +EL    FD+ VL S+
Sbjct: 119 TGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSE 178

Query: 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNL----KGKVKLGHVDCDSEKSLMSKFNVQGFP 234
           D+W+VEF+APWCGHCK L PEW  AA  +    KGKVKL  VD    + L S++ ++GFP
Sbjct: 179 DVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFP 238

Query: 235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAIC 294
           TI +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ ++D+ ++ C    +C
Sbjct: 239 TIKIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLC 297

Query: 295 F-----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYP 337
                             YLE+LL +A+K+K+  + ++W  AG Q +LEN +G+GG+GYP
Sbjct: 298 VVAVLPHILDTGATGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYP 357

Query: 338 ALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGT--PSIVKTEPWDGKDG 395
           A+ A+N +K  +  LK +F  + I EF++E   G     P+ G   P+I   EPWDGKDG
Sbjct: 358 AMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDG 417

Query: 396 QIIEEDEFSLDEL 408
           ++  ED+  L ++
Sbjct: 418 ELPVEDDIDLSDV 430

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q11067|PDIA6_CAEEL Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=3 SV=1

 Score =  323 bits (827), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/407 (43%), Positives = 245/407 (60%), Gaps = 31/407 (7%)

Query: 25  LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
           +Y     VV+LT  NF+SKV+N++ + +VEFYAPWCGHC++L P ++KAA+ LKGVA V 
Sbjct: 19  MYSKKDDVVELTEANFQSKVINSDDIWIVEFYAPWCGHCKSLVPEYKKAASALKGVAKVG 78

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
           A+D  +HQS+   Y ++GFPT+K+F    K P DY G R  + IA+  L + K  +  RL
Sbjct: 79  AVDMTQHQSVGGPYNVQGFPTLKIFGADKKKPTDYNGQRTAQAIADSVLAEAKKAVSARL 138

Query: 144 SGKATGGSSDKSKSDS---------NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCK 194
            GK++G SS  S S S         NE +EL  +NF++LVL SKD+W+VEFFAPWCGHCK
Sbjct: 139 GGKSSGSSSSGSGSGSGKRGGGGSGNEVVELTDANFEDLVLNSKDIWLVEFFAPWCGHCK 198

Query: 195 KLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGA 252
            L P+WK AA+ LKGKV+LG +D      + +KF ++GFPTI  F  G+D      Y+G 
Sbjct: 199 SLEPQWKAAASELKGKVRLGALDATVHTVVANKFAIRGFPTIKYFAPGSDVSDAQDYDGG 258

Query: 253 RTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF----------------- 295
           R +  I ++A  + + N+  PEV E  +Q V+E+ C    +C                  
Sbjct: 259 RQSSDIVAWASARAQENMPAPEVFEGINQQVVEDACKEKQLCIFAFLPHILDCQSECRNN 318

Query: 296 YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSA 355
           YL ML   +EKFK+  + ++W     QP LE    VGG+GYPA+ ALN +K  Y  LK +
Sbjct: 319 YLAMLKEQSEKFKKNLWGWIWVEGAAQPALEESFEVGGFGYPAMTALNFRKNKYAVLKGS 378

Query: 356 FELEHIVEFVKEA--GRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEE 400
           F  + I EF+++   G+G   +L  DG P I KTE WDGKDG +  E
Sbjct: 379 FGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAE 425

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P34329|PDIA4_CAEEL Probable protein disulfide-isomerase A4 OS=Caenorhabditis elegans GN=C14B9.2 PE=3 SV=2

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 141/265 (53%), Gaps = 27/265 (10%)

Query: 6   LLVILTIFSFFARFNLSDAL--YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHC 63
           L+V+L + +  +  + SD    Y     VV LT  NF +  L  N  VLV+FYAPWCGHC
Sbjct: 10  LVVLLCVSAVRSTEDASDDELNYEMDEGVVVLTDKNFDA-FLKKNPSVLVKFYAPWCGHC 68

Query: 64  QALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARD 123
           + L P +EKA++  K    +A +DA     L + + I+G+PT+K +  GK P DY G RD
Sbjct: 69  KHLAPEYEKASS--KVSIPLAKVDATVETELGKRFEIQGYPTLKFWKDGKGPNDYDGGRD 126

Query: 124 VKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV 183
              I E+   ++                    K    E + L + NFD+ +  + +L +V
Sbjct: 127 EAGIVEWVESRVDP----------------NYKPPPEEVVTLTTENFDDFI-SNNELVLV 169

Query: 184 EFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240
           EF+APWCGHCKKLAPE++KAA  LK    KVKLG VD   EK L +K+ V G+PT+ +  
Sbjct: 170 EFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDLGTKYGVSGYPTMKIIR 229

Query: 241 ADKDSPIPYEGARTAGAIESFALEQ 265
             +     Y G R A  I  +  +Q
Sbjct: 230 NGRR--FDYNGPREAAGIIKYMTDQ 252

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
357493125	435	Protein disulfide isomerase family [Medi	0.982	0.928	0.813	0.0
449450884	438	PREDICTED: protein disulfide-isomerase l	0.990	0.929	0.803	0.0
449517433	438	PREDICTED: protein disulfide-isomerase l	0.990	0.929	0.801	0.0
351725315	438	protein disulfide isomerse like protein	0.990	0.929	0.802	0.0
224129074	404	predicted protein [Populus trichocarpa]	0.939	0.955	0.839	0.0
255634759	436	unknown [Glycine max]	0.985	0.928	0.801	0.0
356501255	438	PREDICTED: protein disulfide isomerase-l	0.990	0.929	0.793	0.0
388509964	440	unknown [Lotus japonicus]	0.990	0.925	0.772	0.0
225447176	433	PREDICTED: protein disulfide isomerase-l	0.995	0.944	0.791	0.0
115479475	441	Os09g0451500 [Oryza sativa Japonica Grou	0.944	0.879	0.761	0.0

>gi|357493125|ref|XP_003616851.1| Protein disulfide isomerase family [Medicago truncatula] gi|355518186|gb|AES99809.1| Protein disulfide isomerase family [Medicago truncatula]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/423 (81%), Positives = 378/423 (89%), Gaps = 19/423 (4%)

Query: 7   LVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQAL 66
            + +TIF  F    LS ALYGSSSPV+QLTPNNFKSKVLN+NGVVLVEF+APWCGHC+AL
Sbjct: 6   FIAVTIF-LFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKAL 64

Query: 67  TPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP 126
           TPIWEKAATVLKGV TVAALDA+ HQSLAQEYGIRGFPTIKVF PGKPPVDYQGARDVKP
Sbjct: 65  TPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFSPGKPPVDYQGARDVKP 124

Query: 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFF 186
           IAEFALQQ+KALLKERL+GKATGGS++K +S ++ S+ELNSSNFDELV+KSK+LWIVEFF
Sbjct: 125 IAEFALQQVKALLKERLNGKATGGSNEKKESTASSSVELNSSNFDELVIKSKELWIVEFF 184

Query: 187 APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP 246
           APWCGHCKKLAPEWK+A+NNLKGKVKLGHVDCD++KSLMS+FNVQGFPTILVFGADKD+P
Sbjct: 185 APWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTP 244

Query: 247 IPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF----------- 295
           IPYEGARTA AIESFALEQLETNVAPPEVTEL S DV+EEKCGSAAICF           
Sbjct: 245 IPYEGARTAAAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSK 304

Query: 296 ------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVY 349
                 YL+ LL+VAEKFKR  YS+VWAAAGKQPDLE +VGVGGYGYPALVALNVKKGVY
Sbjct: 305 AEGRNRYLQQLLTVAEKFKRSPYSYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVY 364

Query: 350 TPLKSAFELEHIVEFVKEAGRGGKGNLPL-DGTPSIVKTEPWDGKDGQIIEEDEFSLDEL 408
            PLKSAFEL+ I+EFVKEAGRGGKGNLPL D  P+IVKTEPWDGKDG+I+EEDEFSL+EL
Sbjct: 365 APLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIVEEDEFSLEEL 424

Query: 409 MAE 411
           M E
Sbjct: 425 MGE 427

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450884|ref|XP_004143192.1| PREDICTED: protein disulfide-isomerase like 2-2-like [Cucumis sativus]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/428 (80%), Positives = 377/428 (88%), Gaps = 21/428 (4%)

Query: 1   MRRSQ--LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAP 58
           MR  Q  +L IL +F FF RF+LS+ALYG SSPV+QLTP+NFKSKVLN+NG+VLVEF+AP
Sbjct: 1   MRSGQSPILTIL-LFIFFLRFDLSNALYGPSSPVLQLTPSNFKSKVLNSNGIVLVEFFAP 59

Query: 59  WCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY 118
           WCGHCQALTP+WEKAATVLKGVATVAALDA+ H+SLAQEYGI+GFPTIKVF PGKPPVDY
Sbjct: 60  WCGHCQALTPVWEKAATVLKGVATVAALDADAHKSLAQEYGIKGFPTIKVFAPGKPPVDY 119

Query: 119 QGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSK 178
           QGARDVKPIAEFALQQ+KALLKERL+GK TGG S++ KS+ N S ELNS NFDELV+KSK
Sbjct: 120 QGARDVKPIAEFALQQVKALLKERLNGKTTGGGSNE-KSEPNASEELNSRNFDELVIKSK 178

Query: 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238
           DLWIVEFFAPWCGHCK+LAPEWKKAA NLKGKVKLGHVDCD+EKSLMS+FNVQGFPTILV
Sbjct: 179 DLWIVEFFAPWCGHCKRLAPEWKKAAKNLKGKVKLGHVDCDAEKSLMSRFNVQGFPTILV 238

Query: 239 FGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF--- 295
           FGADK SPI YEGARTA  IESFAL+QLETNVAPPEVTELT  DVM+EKC SAAICF   
Sbjct: 239 FGADKYSPITYEGARTASGIESFALDQLETNVAPPEVTELTGSDVMDEKCASAAICFVAF 298

Query: 296 --------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVA 341
                         YL+ LLSVAEKF+R  YS++WAAAGKQPDLE RVGVGGYGYPALVA
Sbjct: 299 LPDILDSKAEGRNRYLKQLLSVAEKFRRSPYSYIWAAAGKQPDLEQRVGVGGYGYPALVA 358

Query: 342 LNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEED 401
           LNVKKG Y PLKSAFELEHI+EFVKEAGRGGKGNLPL+ TP IVKTEPWDGKDG++IEED
Sbjct: 359 LNVKKGAYAPLKSAFELEHIIEFVKEAGRGGKGNLPLESTPEIVKTEPWDGKDGEVIEED 418

Query: 402 EFSLDELM 409
           EFSL+ELM
Sbjct: 419 EFSLEELM 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517433|ref|XP_004165750.1| PREDICTED: protein disulfide-isomerase like 2-2-like [Cucumis sativus]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/428 (80%), Positives = 376/428 (87%), Gaps = 21/428 (4%)

Query: 1   MRRSQ--LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAP 58
           MR  Q  +L IL +F FF RF+LS+ALYG SSPV+QLTP+NFKSKVLN+NG+VLVEF+AP
Sbjct: 1   MRSGQSPILTIL-LFIFFLRFDLSNALYGPSSPVLQLTPSNFKSKVLNSNGIVLVEFFAP 59

Query: 59  WCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY 118
           WCGHCQALTP+WEKAATVLKGV TVAALDA+ H+SLAQEYGI+GFPTIKVF PGKPPVDY
Sbjct: 60  WCGHCQALTPVWEKAATVLKGVTTVAALDADAHKSLAQEYGIKGFPTIKVFAPGKPPVDY 119

Query: 119 QGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSK 178
           QGARDVKPIAEFALQQ+KALLKERL+GK TGG S++ KS+ N S ELNS NFDELV+KSK
Sbjct: 120 QGARDVKPIAEFALQQVKALLKERLNGKTTGGGSNE-KSEPNASEELNSRNFDELVIKSK 178

Query: 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238
           DLWIVEFFAPWCGHCK+LAPEWKKAA NLKGKVKLGHVDCD+EKSLMS+FNVQGFPTILV
Sbjct: 179 DLWIVEFFAPWCGHCKRLAPEWKKAAKNLKGKVKLGHVDCDAEKSLMSRFNVQGFPTILV 238

Query: 239 FGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF--- 295
           FGADK SPI YEGARTA  IESFAL+QLETNVAPPEVTELT  DVM+EKC SAAICF   
Sbjct: 239 FGADKYSPITYEGARTASGIESFALDQLETNVAPPEVTELTGSDVMDEKCASAAICFVAF 298

Query: 296 --------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVA 341
                         YL+ LLSVAEKF+R  YS++WAAAGKQPDLE RVGVGGYGYPALVA
Sbjct: 299 LPDILDSKAEGRNRYLKQLLSVAEKFRRSPYSYIWAAAGKQPDLEQRVGVGGYGYPALVA 358

Query: 342 LNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEED 401
           LNVKKG Y PLKSAFELEHI+EFVKEAGRGGKGNLPL+ TP IVKTEPWDGKDG++IEED
Sbjct: 359 LNVKKGAYAPLKSAFELEHIIEFVKEAGRGGKGNLPLESTPEIVKTEPWDGKDGEVIEED 418

Query: 402 EFSLDELM 409
           EFSL+ELM
Sbjct: 419 EFSLEELM 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725315|ref|NP_001236576.1| protein disulfide isomerse like protein precursor [Glycine max] gi|163930028|dbj|BAF95902.1| protein disulfide isomerase family [Glycine max] gi|163930094|dbj|BAD42856.2| protein disulfide isomerse like protein [Glycine max]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/426 (80%), Positives = 372/426 (87%), Gaps = 19/426 (4%)

Query: 3   RSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH 62
           R+  LV L +  F      S ALYG+SSPV+QLTP+NFKSKVLN+NGVVLVEF+APWCGH
Sbjct: 7   RTPFLVSLPLLLFIFNLTPSHALYGASSPVLQLTPSNFKSKVLNSNGVVLVEFFAPWCGH 66

Query: 63  CQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           CQALTPIWEKAATVLKGV TVAA+DA+ H SLAQEYGIRGFPTIKVF PGKPPVDYQGAR
Sbjct: 67  CQALTPIWEKAATVLKGVVTVAAIDADAHPSLAQEYGIRGFPTIKVFAPGKPPVDYQGAR 126

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWI 182
           DVKPIAEFALQQ+KALLK+RLSGKATGGSSDK+++ S  S+ELNS NFDELV+KSK+LWI
Sbjct: 127 DVKPIAEFALQQVKALLKDRLSGKATGGSSDKTETSS--SVELNSGNFDELVIKSKELWI 184

Query: 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD 242
           VEFFAPWCGHCKKLAPEWKKA+N+LKGKVKLGHVDCD+EKSLMS+F VQGFPTILVFGAD
Sbjct: 185 VEFFAPWCGHCKKLAPEWKKASNSLKGKVKLGHVDCDAEKSLMSRFKVQGFPTILVFGAD 244

Query: 243 KDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF------- 295
           KDSPIPYEGARTA AIESFALEQLETNVAPPEVTEL S DV+EEKCGSAAICF       
Sbjct: 245 KDSPIPYEGARTALAIESFALEQLETNVAPPEVTELHSPDVLEEKCGSAAICFVAFLPDI 304

Query: 296 ----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK 345
                     YL+ LLSVAEKFKR  YS+VW AAG QPDLE  VGVGGYGYPALVALN+K
Sbjct: 305 LDSKAEGRNIYLQQLLSVAEKFKRSPYSYVWVAAGNQPDLEKNVGVGGYGYPALVALNLK 364

Query: 346 KGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSL 405
           K VY PLKSAFEL+ I+EFVKEAGRGGKGNLPL GTP+IVKTEPWDGKDG+IIEEDEFSL
Sbjct: 365 KAVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLQGTPTIVKTEPWDGKDGEIIEEDEFSL 424

Query: 406 DELMAE 411
           +ELM E
Sbjct: 425 EELMGE 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129074|ref|XP_002320494.1| predicted protein [Populus trichocarpa] gi|222861267|gb|EEE98809.1| predicted protein [Populus trichocarpa]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/405 (83%), Positives = 365/405 (90%), Gaps = 19/405 (4%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           ALYG SSPV+QL P+NFKSKVLN+NGVVLVEF+APWCGHC+ALTP WEKAA VLKGVATV
Sbjct: 1   ALYGPSSPVLQLNPSNFKSKVLNSNGVVLVEFFAPWCGHCKALTPTWEKAAAVLKGVATV 60

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
           AALDA+ HQSLAQEYGIRGFPTIKVFVPG PPVDYQGARDVKPIAE+AL+QIKALLK+RL
Sbjct: 61  AALDADAHQSLAQEYGIRGFPTIKVFVPGNPPVDYQGARDVKPIAEYALKQIKALLKDRL 120

Query: 144 SGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKA 203
           +GK+TGGSS+KS  +++ S+ELNS NFDELVLKSK+LWIVEFFAPWCGHCKKLAPEW KA
Sbjct: 121 NGKSTGGSSEKS--ETSLSVELNSRNFDELVLKSKELWIVEFFAPWCGHCKKLAPEWTKA 178

Query: 204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263
           ANNL+GKVKLGHVDCDSEKSLMS+FNVQGFPTILVFGADKD+PIPYEGARTA AIESFAL
Sbjct: 179 ANNLQGKVKLGHVDCDSEKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFAL 238

Query: 264 EQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------------YLEMLLSVAEK 306
           EQLE+NVAPPEVTELT  DVMEEKCGSAAICF                 YLE LLSVAEK
Sbjct: 239 EQLESNVAPPEVTELTGPDVMEEKCGSAAICFVAFLPDILDSKAEGRNKYLEQLLSVAEK 298

Query: 307 FKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVK 366
           FKR  YS+VWAAAGKQPDLENRVGVGGYGYPALVALN KKG Y PLKSAFELEHIVEFVK
Sbjct: 299 FKRSPYSYVWAAAGKQPDLENRVGVGGYGYPALVALNAKKGAYAPLKSAFELEHIVEFVK 358

Query: 367 EAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE 411
           EAGRGGKGNLPL+G P IVKTEPWDGKDG+IIEEDEFSL+ELM E
Sbjct: 359 EAGRGGKGNLPLNGNPEIVKTEPWDGKDGEIIEEDEFSLEELMGE 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634759|gb|ACU17741.1| unknown [Glycine max]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/424 (80%), Positives = 370/424 (87%), Gaps = 19/424 (4%)

Query: 3   RSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH 62
           R+  LV   +  F      S ALYG+SSPV+QLTP+NFKSKVLN+NGVVLVEF+APWCGH
Sbjct: 7   RTPFLVSFPLLLFIFNLTPSHALYGASSPVLQLTPSNFKSKVLNSNGVVLVEFFAPWCGH 66

Query: 63  CQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           CQALTPIWEKAATVLKGV TVAA+DA+ H SLAQEYGIRGFPTIKVF PGKPPVDYQGAR
Sbjct: 67  CQALTPIWEKAATVLKGVVTVAAIDADAHPSLAQEYGIRGFPTIKVFAPGKPPVDYQGAR 126

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWI 182
           DVKPIAEFALQQ+KALLK+RLSGKATGGSSDK+++ S  S+ELNS NFDELV+KSK+LWI
Sbjct: 127 DVKPIAEFALQQVKALLKDRLSGKATGGSSDKTETSS--SVELNSGNFDELVIKSKELWI 184

Query: 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD 242
           VEFFAPWCGHCKKLAPEWKKA+N+LKGKVKLGHVDCD+EKSLMS+F VQGFPTILVFGAD
Sbjct: 185 VEFFAPWCGHCKKLAPEWKKASNSLKGKVKLGHVDCDAEKSLMSRFKVQGFPTILVFGAD 244

Query: 243 KDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF------- 295
           KDSPIPYEGARTA AIESFALEQLETNVAPPEVTEL S DV+EEKCGSAAICF       
Sbjct: 245 KDSPIPYEGARTALAIESFALEQLETNVAPPEVTELHSPDVLEEKCGSAAICFVAFLPDI 304

Query: 296 ----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK 345
                     YL+ LLSVAEKFKR  YS+VW AAG QPDLE  VGVGGYGYPALVALN+K
Sbjct: 305 LDSKAEGRNIYLQQLLSVAEKFKRSPYSYVWVAAGNQPDLEKNVGVGGYGYPALVALNLK 364

Query: 346 KGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSL 405
           K VY PLKSAFEL+ I+EFVKEAGRGGKGNLPL GTP+IVKTEPWDGKDG+IIEEDEFSL
Sbjct: 365 KAVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLQGTPTIVKTEPWDGKDGEIIEEDEFSL 424

Query: 406 DELM 409
           +ELM
Sbjct: 425 EELM 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501255|ref|XP_003519441.1| PREDICTED: protein disulfide isomerase-like 2-3-like [Glycine max]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/426 (79%), Positives = 373/426 (87%), Gaps = 19/426 (4%)

Query: 3   RSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH 62
           R+  LV  ++  F      S ALYG+S+PV+QLTP+NFKSKVLN+NGVVLVEF+APWCGH
Sbjct: 7   RTPFLVSFSLLLFIFNLTPSYALYGASTPVLQLTPSNFKSKVLNSNGVVLVEFFAPWCGH 66

Query: 63  CQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           CQALTPIWEKAATVLKGV TVAA+DA+ H SLAQEYGIRGFPTIKVF PGKPPVDYQGAR
Sbjct: 67  CQALTPIWEKAATVLKGVVTVAAIDADAHPSLAQEYGIRGFPTIKVFAPGKPPVDYQGAR 126

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWI 182
           DVKPIAEFALQQ+KALLK+RLSGKATGGSS   K++++ S+ELNS NFDELV+KSK+LWI
Sbjct: 127 DVKPIAEFALQQVKALLKDRLSGKATGGSS--EKTETSSSVELNSGNFDELVIKSKELWI 184

Query: 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD 242
           VEFFAPWCGHCKKLAPEWKKA+NNLKGKVKLGHVDCD+EKSLMS+F VQGFPTILVFGAD
Sbjct: 185 VEFFAPWCGHCKKLAPEWKKASNNLKGKVKLGHVDCDAEKSLMSRFKVQGFPTILVFGAD 244

Query: 243 KDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF------- 295
           KDSPIPYEGARTA AIESFALEQLETN+APPEVTEL S DV+EEKCGSAAICF       
Sbjct: 245 KDSPIPYEGARTASAIESFALEQLETNIAPPEVTELYSPDVLEEKCGSAAICFVAFLPDI 304

Query: 296 ----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK 345
                     YL+ LLSVAEKFKR  YS+VW AAGKQPDLE  VGVGGYGYPALVALN+K
Sbjct: 305 LDSKAEGRNRYLQQLLSVAEKFKRSPYSYVWVAAGKQPDLEKNVGVGGYGYPALVALNLK 364

Query: 346 KGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSL 405
           K VY PLKSAFEL+ I+EFVKEAGRGGKGNLP++GTP+IVKTEPWDGKDG+IIEEDEFSL
Sbjct: 365 KAVYAPLKSAFELDQIIEFVKEAGRGGKGNLPIEGTPTIVKTEPWDGKDGEIIEEDEFSL 424

Query: 406 DELMAE 411
           +ELM E
Sbjct: 425 EELMGE 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509964|gb|AFK43048.1| unknown [Lotus japonicus]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/427 (77%), Positives = 371/427 (86%), Gaps = 20/427 (4%)

Query: 3   RSQLLV-ILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCG 61
           RSQ  V  L + S       S ALYG+SSPVVQL P+NFKSKVLN+ GVVLVEF+APWCG
Sbjct: 7   RSQFFVPFLLLLSIIFNLAPSHALYGASSPVVQLNPSNFKSKVLNSKGVVLVEFFAPWCG 66

Query: 62  HCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           HC+ALTPIWEKAATVLKGV TVAALDA+ HQ+LAQEYGIRGFPTIKVF PGKPPVDYQGA
Sbjct: 67  HCKALTPIWEKAATVLKGVVTVAALDADAHQALAQEYGIRGFPTIKVFAPGKPPVDYQGA 126

Query: 122 RDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLW 181
           RDVKPIAE+ALQQ+KALLK+RL+GKATGGS++K+++ +  S+ELNS NFDELVLKSK+LW
Sbjct: 127 RDVKPIAEYALQQVKALLKDRLNGKATGGSNEKTETSA--SVELNSRNFDELVLKSKELW 184

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           +VEFFAPWCGHCKKLAPEWKKA+NNLKGKVKLGHVDCD+++SLMS+F V+GFPTILVFGA
Sbjct: 185 VVEFFAPWCGHCKKLAPEWKKASNNLKGKVKLGHVDCDADQSLMSRFGVKGFPTILVFGA 244

Query: 242 DKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF------ 295
           DKD+PIPYEGARTA AIESFALEQLETNVAPPEVTEL + +V++EKCGSAAICF      
Sbjct: 245 DKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELHAPEVLDEKCGSAAICFVAFLPD 304

Query: 296 -----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNV 344
                      Y++ LLSVAEKFKR  YS+VW AAGKQPDLE  VGVGGYGYPALVALN+
Sbjct: 305 ILDSKAEGRNRYIQQLLSVAEKFKRSPYSYVWVAAGKQPDLEKSVGVGGYGYPALVALNI 364

Query: 345 KKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFS 404
           KK VY PLKSAFEL+ I+EFVKEAGRGGKGNLPL  TP+IVKTEPWDGKDG++IEEDEFS
Sbjct: 365 KKAVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPAIVKTEPWDGKDGEVIEEDEFS 424

Query: 405 LDELMAE 411
           LDELM E
Sbjct: 425 LDELMGE 431

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447176|ref|XP_002276520.1| PREDICTED: protein disulfide isomerase-like 2-3 [Vitis vinifera] gi|297739230|emb|CBI28881.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/431 (79%), Positives = 369/431 (85%), Gaps = 22/431 (5%)

Query: 1   MRRSQLLVILTIFSFFARFNLSD---ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYA 57
           M RS  L+ L   + F    LS     LYG SSPVVQL P+NFKSKVLN+NGVVLVEF+A
Sbjct: 1   MARSPPLITLPFLTIFIVVQLSATAYGLYGPSSPVVQLNPSNFKSKVLNSNGVVLVEFFA 60

Query: 58  PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVD 117
           PWCGHC+ALTP WEKAA+VLKGVATVAALDA+ +Q+LAQEYGIRGFPTIKVF PGKPPVD
Sbjct: 61  PWCGHCKALTPTWEKAASVLKGVATVAALDADANQALAQEYGIRGFPTIKVFAPGKPPVD 120

Query: 118 YQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKS 177
           YQGARDVKPIAEFALQQIKALLKERLSGKATGGSS   KS+ + S+EL SSNFDELVLKS
Sbjct: 121 YQGARDVKPIAEFALQQIKALLKERLSGKATGGSS--EKSEISSSVELTSSNFDELVLKS 178

Query: 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237
           KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS+KSLMS+F+VQGFPTIL
Sbjct: 179 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSDKSLMSRFSVQGFPTIL 238

Query: 238 VFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-- 295
           VFGADKD+P+PYEGARTA AIESFALEQLETNVAPPEVTELT  DVMEEKCGSAAICF  
Sbjct: 239 VFGADKDTPVPYEGARTASAIESFALEQLETNVAPPEVTELTGPDVMEEKCGSAAICFVA 298

Query: 296 ---------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALV 340
                          YLEM+LS+AEKFKR  YS+VWAAAGKQ DLE +VGVGGYGYPALV
Sbjct: 299 FLPDILDSKAEGRNKYLEMMLSIAEKFKRSPYSYVWAAAGKQADLEKQVGVGGYGYPALV 358

Query: 341 ALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEE 400
           ALNVKKG Y PLKSAFEL+ I+ FVKEAG GGKG LPL  TP +VKTEPWDGKDG+IIEE
Sbjct: 359 ALNVKKGAYAPLKSAFELDQIIGFVKEAGHGGKGILPLASTPVVVKTEPWDGKDGEIIEE 418

Query: 401 DEFSLDELMAE 411
           DEFSL+ELM +
Sbjct: 419 DEFSLEELMGD 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115479475|ref|NP_001063331.1| Os09g0451500 [Oryza sativa Japonica Group] gi|75322635|sp|Q67UF5.1|PDI23_ORYSJ RecName: Full=Protein disulfide isomerase-like 2-3; Short=OsPDIL2-3; AltName: Full=Protein disulfide isomerase-like 5-1; Short=OsPDIL5-1; Flags: Precursor gi|51535926|dbj|BAD38008.1| putative protein disulfide isomerase-related protein [Oryza sativa Japonica Group] gi|51536089|dbj|BAD38214.1| putative protein disulfide isomerase-related protein [Oryza sativa Japonica Group] gi|113631564|dbj|BAF25245.1| Os09g0451500 [Oryza sativa Japonica Group]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/411 (76%), Positives = 349/411 (84%), Gaps = 23/411 (5%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           ALY + SPV+Q  PNNFKSKVLN+NGVVLVEF+APWCGHCQ LTPIWEKAA VLKGVATV
Sbjct: 23  ALYSAGSPVLQFNPNNFKSKVLNSNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGVATV 82

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
           AALDA+ H+ LAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI EFAL Q+KALL++RL
Sbjct: 83  AALDADAHKELAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIVEFALSQVKALLRDRL 142

Query: 144 SGKATGGSSDK------SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLA 197
           +GK + GS  K       K++ + SIELNS NFD+LV KSKDLWIVEFFAPWCGHCKKLA
Sbjct: 143 NGKTSAGSGGKKSGGSSEKTEPSASIELNSQNFDKLVTKSKDLWIVEFFAPWCGHCKKLA 202

Query: 198 PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
           PEWKKAA NLKG+VKLGHVDCD+EKSLMSK+ V+GFPTILVFGADK+SP PY+GAR A A
Sbjct: 203 PEWKKAAKNLKGQVKLGHVDCDAEKSLMSKYKVEGFPTILVFGADKESPFPYQGARVASA 262

Query: 258 IESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------------YLEML 300
           IESFALEQLE N APPEV+ELT  D MEEKC SAAICF                 YLE+L
Sbjct: 263 IESFALEQLEANAAPPEVSELTGPDAMEEKCASAAICFVSFLPDILDSKAEGRNKYLELL 322

Query: 301 LSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEH 360
           LSVAEKFK+  YSFVW AAGKQ DLE +VGVGGYGYPA+VALNVKKG Y PL+SAF+L+ 
Sbjct: 323 LSVAEKFKKSPYSFVWTAAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRSAFQLDE 382

Query: 361 IVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE 411
           I EFVKEAGRGGKGNLPLDGTP+IV++EPWDGKDG++IEEDEFSL+ELMA+
Sbjct: 383 ITEFVKEAGRGGKGNLPLDGTPTIVQSEPWDGKDGEVIEEDEFSLEELMAD 433

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2010577	447	PDIL2-2 "PDI-like 2-2" [Arabid	0.705	0.648	0.728	2.5e-164
TAIR|locus:2059395	440	PDIL2-3 "AT2G32920" [Arabidops	0.746	0.697	0.676	2.6e-160
FB|FBgn0025678	433	CaBP1 "calcium-binding protein	0.659	0.625	0.458	1.7e-86
WB|WBGene00013030	436	Y49E10.4 [Caenorhabditis elega	0.700	0.660	0.418	2.5e-75
UNIPROTKB|A6QNL5	453	PDIA6 "PDIA6 protein" [Bos tau	0.708	0.642	0.443	6.5e-67
UNIPROTKB|Q5R6T1	440	PDIA6 "Protein disulfide-isome	0.742	0.693	0.434	1.1e-66
UNIPROTKB|F1NK96	447	PDIA6 "Uncharacterized protein	0.708	0.651	0.429	2.2e-66
UNIPROTKB|P38660	439	PDIA6 "Protein disulfide-isome	0.669	0.626	0.459	2.8e-66
UNIPROTKB|Q15084	440	PDIA6 "Protein disulfide-isome	0.742	0.693	0.431	2.8e-66
MGI|MGI:1919103	440	Pdia6 "protein disulfide isome	0.746	0.697	0.420	4.5e-66

TAIR|locus:2010577 PDIL2-2 "PDI-like 2-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1149 (409.5 bits), Expect = 2.5e-164, Sum P(2) = 2.5e-164
 Identities = 217/298 (72%), Positives = 256/298 (85%)

Query:    16 FARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAAT 75
             FA F+  +ALYGSSSPV+QLTP+NFKSKVLN+NGVVLVEF+APWCGHCQ+LTP WEK A+
Sbjct:    18 FALFDRGNALYGSSSPVLQLTPSNFKSKVLNSNGVVLVEFFAPWCGHCQSLTPTWEKVAS 77

Query:    76 VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
              LKG+ATVAA+DA+ H+S++Q+YG+RGFPTIKVFVPGKPP+DYQGARD K I++FA++QI
Sbjct:    78 TLKGIATVAAIDADAHKSVSQDYGVRGFPTIKVFVPGKPPIDYQGARDAKSISQFAIKQI 137

Query:   136 KALLKERLSGKA--TXXXXXXXXXXXNE---SIELNSSNFDELVLKSKDLWIVEFFAPWC 190
             KALLK+RL GK   T           +E   S+ELNSSNFDELV +SK+LWIVEFFAPWC
Sbjct:   138 KALLKDRLDGKTSGTKNGGGSSEKKKSEPSASVELNSSNFDELVTESKELWIVEFFAPWC 197

Query:   191 GHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYE 250
             GHCKKLAPEWKKAANNLKGKVKLGHV+CD+E+S+ S+F VQGFPTILVFG+DK SP+PYE
Sbjct:   198 GHCKKLAPEWKKAANNLKGKVKLGHVNCDAEQSIKSRFKVQGFPTILVFGSDKSSPVPYE 257

Query:   251 GARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF--YL-EMLLSVAE 305
             GAR+A AIESFALEQLE+N  P EVTELT  DVME+KCGSAAICF  +L ++L S AE
Sbjct:   258 GARSASAIESFALEQLESNAGPAEVTELTGPDVMEDKCGSAAICFVSFLPDILDSKAE 315

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2059395 PDIL2-3 "AT2G32920" [Arabidopsis thaliana (taxid:3702)]

 Score = 1105 (394.0 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
 Identities = 211/312 (67%), Positives = 249/312 (79%)

Query:     6 LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQA 65
             LL +LTI   F  F+LS ALYGSSSPVVQLT +NFKSKVLN+NGVVLVEF+APWCGHC+A
Sbjct:     8 LLTLLTIC--FGFFDLSSALYGSSSPVVQLTASNFKSKVLNSNGVVLVEFFAPWCGHCKA 65

Query:    66 LTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
             LTP WEK A +LKGVATVAA+DA+ HQS AQ+YGI+GFPTIKVFVPGK P+DYQGARD K
Sbjct:    66 LTPTWEKVANILKGVATVAAIDADAHQSAAQDYGIKGFPTIKVFVPGKAPIDYQGARDAK 125

Query:   126 PIAEFALQQIKALLKERLSGKA--TXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIV 183
              IA FA +QIK LL +RL GK+  T           + S+ELN+SNFD+LV++S +LWIV
Sbjct:   126 SIANFAYKQIKGLLSDRLEGKSKPTGGGSKEKKSEPSASVELNASNFDDLVIESNELWIV 185

Query:   184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK 243
             EFFAPWCGHCKKLAPEWK+AA NL+GKVKLGHV+CD E+S+MS+F VQGFPTILVFG DK
Sbjct:   186 EFFAPWCGHCKKLAPEWKRAAKNLQGKVKLGHVNCDVEQSIMSRFKVQGFPTILVFGPDK 245

Query:   244 DSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSV 303
              SP PYEGAR+A AIESFA E +E++  P EVTELT  DVME+KCGSAAICF +  L  +
Sbjct:   246 SSPYPYEGARSASAIESFASELVESSAGPVEVTELTGPDVMEKKCGSAAICF-ISFLPDI 304

Query:   304 AEKFKRGHYSFV 315
              +    G   ++
Sbjct:   305 LDSKAEGRNKYL 316

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

FB|FBgn0025678 CaBP1 "calcium-binding protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 650 (233.9 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
 Identities = 126/275 (45%), Positives = 173/275 (62%)

Query:    24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
             A Y  S  VV+LTP+NF  +VL  + + +VEFYAPWCGHCQ+L P ++K A  LKGV  V
Sbjct:    19 AFYSPSDGVVELTPSNFDREVLKDDAIWVVEFYAPWCGHCQSLVPEYKKLAKALKGVVKV 78

Query:    84 AALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKER 142
              +++A+   +L+ ++G+RGFPTIK+F   K  P DY G R  K IAE AL ++K  ++  
Sbjct:    79 GSVNADADSTLSGQFGVRGFPTIKIFGANKKSPTDYNGQRTAKAIAEAALAEVKKKVQGV 138

Query:   143 LSGKATXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKK 202
             L G              ++ IEL   NFD+LVL S D+W+VEFFAPWCGHCK LAPEW K
Sbjct:   139 LGGGGGSSSGGSGSSSGDDVIELTEDNFDKLVLNSDDIWLVEFFAPWCGHCKNLAPEWAK 198

Query:   203 AANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIP-YEGARTAGAIE 259
             AA  LKGKVKLG +D  + +S  +++NV+G+PTI  F  G+ + S    Y+G RTA  I 
Sbjct:   199 AAKELKGKVKLGALDATAHQSKAAEYNVRGYPTIKFFPAGSKRASDAQEYDGGRTASDIV 258

Query:   260 SFALEQLETNVAPPEVTELTSQDVMEEKCGSAAIC 294
             S+A ++   NV  PE+ E+ ++   E  C    +C
Sbjct:   259 SWASDKHVANVPAPELIEIINESTFETACEGKPLC 293

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IMP;IDA

WB|WBGene00013030 Y49E10.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
 Identities = 126/301 (41%), Positives = 182/301 (60%)

Query:     1 MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWC 60
             M RS  L IL +F+       S   Y +   V +LT +NF +KVL ++ + +VEFYAP+C
Sbjct:     1 MPRS--LWILLVFAISG----SSTFYTAKDSVFELTDSNFDAKVLKSDRIWIVEFYAPYC 54

Query:    61 GHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF--VPGKPPVDY 118
             GHC++L P ++KAA +LKG+A + A+DA  HQ +  +Y I+G+PTIK+F       P+DY
Sbjct:    55 GHCKSLVPEYKKAAKLLKGIAEIGAIDATVHQKIPLKYSIKGYPTIKIFGATEKSKPIDY 114

Query:   119 QGARDVKPIAEFALQQIKALLKERLSGKATXXXXXXXXXXXNESIELNSSNFDELVLKSK 178
              G R  K IA+   + I+  L++RL GK++            + + L  SNFD+LVL SK
Sbjct:   115 NGPRTAKGIADAVKKSIEKSLEQRLKGKSSEKSKKSDKK--GKVVVLTDSNFDKLVLNSK 172

Query:   179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238
             + W+VEFFAPWCGHC+KL PEWKKAA  + G+VK G +D  + +S+  KF ++GFPTI  
Sbjct:   173 EPWMVEFFAPWCGHCQKLEPEWKKAAEEMGGRVKFGALDATAHESIAQKFGIRGFPTIKF 232

Query:   239 F--GADKDSPIP-YEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF 295
             F  G    S    Y+G RT+  + S+A  + +   A PEV E T + V+E  C    +C 
Sbjct:   233 FAPGTSSASDAEDYQGGRTSTDLISYAESKYDDFGAAPEVVEGTGKAVVETVCKDKQLCI 292

Query:   296 Y 296
             +
Sbjct:   293 F 293

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

UNIPROTKB|A6QNL5 PDIA6 "PDIA6 protein" [Bos taurus (taxid:9913)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 134/302 (44%), Positives = 189/302 (62%)

Query:    23 DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT 82
             + LY SS  V++LTP+NF  +V+ ++ + LVEFYAPWCGHCQ LTP W+KAAT LK V  
Sbjct:    31 NGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVK 90

Query:    83 VAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDVKPIAEFALQQIKALLKE 141
             V A+DA++HQSL  +YG++GFPTIK+F   K  P DYQG R  + I + AL  ++ L+K+
Sbjct:    91 VGAVDADKHQSLGGQYGVQGFPTIKIFGSNKNKPEDYQGGRTGEAIVDAALSALRQLVKD 150

Query:   142 RLSGKATXXXXXXXXXXXNES----IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLA 197
             RL G+ +           + S    IEL   NFD+ VL S+D+W+VEF+APWCGHCK L 
Sbjct:   151 RLGGRGSGYSSGKQGRGDSSSKKDVIELTDDNFDKNVLDSEDVWMVEFYAPWCGHCKNLE 210

Query:   198 PEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253
             PEW  AA  +K    GKVKL  VD    + L S++ ++GFPTI +F    +SP+ Y+G R
Sbjct:   211 PEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG-ESPVDYDGGR 269

Query:   254 TAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYS 313
             T   I S AL+    N  PPE+ E+ ++DV ++ C    +C  + +L  + +    G  S
Sbjct:   270 TRSDIVSRALDLFSDNAPPPELLEIINEDVAKKTCEEHQLCV-VAVLPHILDTGAAGRNS 328

Query:   314 FV 315
             ++
Sbjct:   329 YL 330

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|Q5R6T1 PDIA6 "Protein disulfide-isomerase A6" [Pongo abelii (taxid:9601)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 139/320 (43%), Positives = 196/320 (61%)

Query:     6 LLVI-LTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQ 64
             LLV+ L   +FF   N    LY SS  V++LTP+NF  +V+ ++ + LVEFYAPWCGHCQ
Sbjct:     3 LLVLGLVSCAFFLEVN---GLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQ 59

Query:    65 ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARD 123
              LTP W+KAAT LK V  V A+DA++H SL  +YG++GFPTIK+F   K  P DYQG R 
Sbjct:    60 RLTPEWKKAATALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRT 119

Query:   124 VKPIAEFALQQIKALLKERLSGKATXXXXXXXXXXXNES----IELNSSNFDELVLKSKD 179
              + I + AL  ++ L+K+RL G++            + S    IEL   +FD+ VL S+D
Sbjct:   120 GEAIVDAALSALRQLVKDRLGGQSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSED 179

Query:   180 LWIVEFFAPWCGHCKKLAPEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPT 235
             +W+VEF+APWCGHCK L PEW  AA+ +K    GKVKL  VD    + L S++ ++GFPT
Sbjct:   180 VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPT 239

Query:   236 ILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF 295
             I +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ S+D+ +  C    +C 
Sbjct:   240 IKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAKRTCEEHQLCV 298

Query:   296 YLEMLLSVAEKFKRGHYSFV 315
              + +L  + +    G  S++
Sbjct:   299 -VSVLPHILDTGAAGRNSYL 317

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0030168 "platelet activation" evidence=ISS

GO:0042470 "melanosome" evidence=ISS

GO:0070527 "platelet aggregation" evidence=ISS

UNIPROTKB|F1NK96 PDIA6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 130/303 (42%), Positives = 188/303 (62%)

Query:    23 DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT 82
             + LY +S  V++LTP NF  +V+ +  + LVEFYAPWCGHCQ LTP W+KAAT LKGV  
Sbjct:    23 NGLYSASDDVIELTPTNFNKEVIQSESLWLVEFYAPWCGHCQRLTPEWKKAATALKGVVK 82

Query:    83 VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPV-DYQGARDVKPIAEFALQQIKALLKE 141
             V A+DA++HQSL  +YG+RGFPTIK+F   K    DYQG R  + I + AL  +++L+K+
Sbjct:    83 VGAVDADKHQSLGGQYGVRGFPTIKIFGANKNKAEDYQGGRTSEAIVDAALSALRSLVKD 142

Query:   142 RLSGKATXXXXXXXXXXXN-----ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL 196
             RLSG++                  + IEL   +FD+ V+ S D+W+VEF+APWCGHCK L
Sbjct:   143 RLSGRSGGYSSGRQSRESGGGDKKDVIELTDDSFDKNVINSDDVWMVEFYAPWCGHCKNL 202

Query:   197 APEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA 252
              PEW  AA  +K    GKVKL  VD    + L +++ ++GFPTI +F   +D P+ Y+G 
Sbjct:   203 EPEWAAAATEVKEQTKGKVKLAAVDATVNQMLANRYGIRGFPTIKIFQKGED-PVDYDGG 261

Query:   253 RTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHY 312
             RT   I + AL+    N  PPE+ E+ ++DV++  C +  +C  + +L  + +    G  
Sbjct:   262 RTRSDITARALDLFSDNAPPPELLEIINEDVLKTTCDAHQLCI-ISVLPHILDTGASGRN 320

Query:   313 SFV 315
             S++
Sbjct:   321 SYL 323

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

UNIPROTKB|P38660 PDIA6 "Protein disulfide-isomerase A6" [Mesocricetus auratus (taxid:10036)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 131/285 (45%), Positives = 180/285 (63%)

Query:    19 FNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK 78
             F  +  LY SS  V++LTP+NF  +V+ +N + LVEFYAPWCGHCQ LTP W+KAAT LK
Sbjct:    14 FLAASGLYSSSDDVIELTPSNFNREVIQSNSLWLVEFYAPWCGHCQRLTPEWKKAATALK 73

Query:    79 GVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDVKPIAEFALQQIKA 137
              V  V A+DA++HQSL  +YG++GFPTIK+F   K  P DYQG R  + I + AL  ++ 
Sbjct:    74 DVVKVGAVDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQ 133

Query:   138 LLKERLSGKATXXXXXXXXXXXNES----IELNSSNFDELVLKSKDLWIVEFFAPWCGHC 193
             L+K+RLSG++            + S    IEL    FD+ VL S D+W+VEF+APWCGHC
Sbjct:   134 LVKDRLSGRSGGYSSGKQGRGDSSSKKDVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHC 193

Query:   194 KKLAPEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY 249
             K L PEW  AA  +K    GKVKL  VD    + L +++ ++GFPTI +F    ++P+ Y
Sbjct:   194 KNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKG-EAPVDY 252

Query:   250 EGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAIC 294
             +G RT   I S AL+    N  PPE+ E+ ++DV ++ C    +C
Sbjct:   253 DGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAKKMCEEHQLC 297

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0030168 "platelet activation" evidence=ISS

GO:0042470 "melanosome" evidence=ISS

GO:0070527 "platelet aggregation" evidence=ISS

UNIPROTKB|Q15084 PDIA6 "Protein disulfide-isomerase A6" [Homo sapiens (taxid:9606)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 138/320 (43%), Positives = 196/320 (61%)

Query:     6 LLVI-LTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQ 64
             LLV+ L   +FF   N    LY SS  V++LTP+NF  +V+ ++ + LVEFYAPWCGHCQ
Sbjct:     3 LLVLGLVSCTFFLAVN---GLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQ 59

Query:    65 ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARD 123
              LTP W+KAAT LK V  V A+DA++H SL  +YG++GFPTIK+F   K  P DYQG R 
Sbjct:    60 RLTPEWKKAATALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRT 119

Query:   124 VKPIAEFALQQIKALLKERLSGKATXXXXXXXXXXXNES----IELNSSNFDELVLKSKD 179
              + I + AL  ++ L+K+RL G++            + S    IEL   +FD+ VL S+D
Sbjct:   120 GEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSED 179

Query:   180 LWIVEFFAPWCGHCKKLAPEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPT 235
             +W+VEF+APWCGHCK L PEW  AA+ +K    GKVKL  VD    + L S++ ++GFPT
Sbjct:   180 VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPT 239

Query:   236 ILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF 295
             I +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ ++D+ +  C    +C 
Sbjct:   240 IKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCV 298

Query:   296 YLEMLLSVAEKFKRGHYSFV 315
              + +L  + +    G  S++
Sbjct:   299 -VAVLPHILDTGAAGRNSYL 317

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

MGI|MGI:1919103 Pdia6 "protein disulfide isomerase associated 6" [Mus musculus (taxid:10090)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 135/321 (42%), Positives = 198/321 (61%)

Query:     4 SQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHC 63
             ++L++ L   +FF   +    LY SS  V++LTP+NF  +V+ ++G+ LVEFYAPWCGHC
Sbjct:     2 ARLVLGLVSCTFFLAVS---GLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHC 58

Query:    64 QALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGAR 122
             Q LTP W+KAAT LK V  V A++A++HQSL  +YG++GFPTIK+F   K  P DYQG R
Sbjct:    59 QRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGR 118

Query:   123 DVKPIAEFALQQIKALLKERLSGKATXXXXXXXXXXXNES----IELNSSNFDELVLKSK 178
               + I + AL  ++ L+K+RL G++            + S    +EL    FD+ VL S+
Sbjct:   119 TGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSE 178

Query:   179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFP 234
             D+W+VEF+APWCGHCK L PEW  AA  +K    GKVKL  VD    + L S++ ++GFP
Sbjct:   179 DVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFP 238

Query:   235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAIC 294
             TI +F    +SP+ Y+G RT   I S AL+    N  PPE+ E+ ++D+ ++ C    +C
Sbjct:   239 TIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLC 297

Query:   295 FYLEMLLSVAEKFKRGHYSFV 315
               + +L  + +    G  S++
Sbjct:   298 V-VAVLPHILDTGAAGRNSYL 317

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=ISO

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48773	PDI23_ARATH	5, ., 3, ., 4, ., 1	0.7173	0.9610	0.8977	no	no
Q5R6T1	PDIA6_PONAB	5, ., 3, ., 4, ., 1	0.4338	0.9708	0.9068	yes	no
Q15084	PDIA6_HUMAN	5, ., 3, ., 4, ., 1	0.4315	0.9708	0.9068	yes	no
Q9MAU6	PDI22_ARATH	5, ., 3, ., 4, ., 1	0.7037	0.9927	0.9127	yes	no
Q67UF5	PDI23_ORYSJ	5, ., 3, ., 4, ., 1	0.7615	0.9440	0.8798	yes	no
Q11067	PDIA6_CAEEL	5, ., 3, ., 4, ., 1	0.4348	0.9148	0.8545	yes	no
Q63081	PDIA6_RAT	5, ., 3, ., 4, ., 1	0.4226	0.9756	0.9113	yes	no
Q922R8	PDIA6_MOUSE	5, ., 3, ., 4, ., 1	0.4249	0.9756	0.9113	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.4.1	0.979
3rd Layer	5.3.4	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIV.3561.1	hypothetical protein (404 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0003069401	hypothetical protein (505 aa)				•	•		•	•	0.451
	fgenesh4_pm.C_LG_V000365	hypothetical protein (493 aa)				•	•		•	•	0.439

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	2e-59
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	1e-55
cd02983	130	cd02983, P5_C, P5 family, C-terminal redox inactiv	3e-45
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	6e-43
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	3e-42
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	3e-40
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	1e-38
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	6e-38
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	3e-36
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	8e-36
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	5e-35
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	2e-34
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	4e-34
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	1e-33
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	7e-32
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	7e-31
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	2e-30
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	3e-28
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	4e-28
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	5e-24
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	6e-24
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	2e-23
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	6e-23
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	8e-23
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-22
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	2e-22
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	2e-22
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	4e-21
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	5e-21
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	5e-21
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	9e-21
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	3e-20
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	1e-19
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-19
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	7e-19
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	1e-18
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	2e-18
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	2e-18
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	1e-17
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-17
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	7e-17
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	3e-16
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-15
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	2e-14
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	2e-14
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	5e-14
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	3e-13
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	6e-13
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	1e-12
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	3e-12
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	5e-12
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	1e-11
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	3e-11
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	7e-11
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	8e-11
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	2e-10
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	3e-10
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	8e-10
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	1e-09
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	6e-08
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	6e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	8e-08
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	8e-08
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	3e-07
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	9e-07
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	1e-06
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	3e-06
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	4e-06
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	7e-06
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	7e-06
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	2e-05
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	4e-05
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	5e-05
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	6e-05
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	8e-05
cd02972	98	cd02972, DsbA_family, DsbA family; consists of Dsb	8e-05
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	1e-04
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	1e-04
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	2e-04
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	2e-04
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	3e-04
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	4e-04
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	4e-04
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	6e-04
cd02972	98	cd02972, DsbA_family, DsbA family; consists of Dsb	6e-04
cd03069	104	cd03069, PDI_b_ERp57, PDIb family, ERp57 subfamily	9e-04
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	0.002
cd02981	97	cd02981, PDI_b_family, Protein Disulfide Isomerase	0.002
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	0.003
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	0.004

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  188 bits (479), Expect = 2e-59
 Identities = 65/101 (64%), Positives = 77/101 (76%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +EL  SNFD+ VL S D+W+VEF+APWCGHCK LAPEWKKAA  LKG VK+G VD D  +
Sbjct: 3   VELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ 62

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263
           SL  ++ V+GFPTI VFGA K+SP  Y+G RTA AI S AL
Sbjct: 63  SLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAAL 103

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  178 bits (454), Expect = 1e-55
 Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 1/103 (0%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
            VV+LT +NF  KVLN++ V LVEFYAPWCGHC+ L P W+KAA  LKG+  V A+DA+ 
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60

Query: 91  HQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDVKPIAEFAL 132
           HQSLAQ+YG+RGFPTIKVF  GK  P DYQG R  K I   AL
Sbjct: 61  HQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAAL 103

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239281 cd02983, P5_C, P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  152 bits (386), Expect = 3e-45
 Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 17/130 (13%)

Query: 272 PPEVTELTSQDVMEEKCGSAAICF-----------------YLEMLLSVAEKFKRGHYSF 314
            PE+ ELTS+DV EE C    +C                  YLE+L SVAEKFK+  + +
Sbjct: 1   APEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGW 60

Query: 315 VWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKG 374
           +W  AG Q DLE  + +GG+GYPA+VA+N +K  +  LK +F  + I EF++E   G   
Sbjct: 61  LWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGP 120

Query: 375 NLPLDGTPSI 384
            LP++G P +
Sbjct: 121 TLPVNGLPKV 130

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. Length = 130

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  145 bits (368), Expect = 6e-43
 Identities = 54/103 (52%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEK 222
           L +SNFDE+VL +KD  +VEF+APWCGHCK LAPE++K A  LK    + L  VD  +EK
Sbjct: 1   LTASNFDEIVLSNKD-VLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
            L S+F V GFPTI  F   K  P+ YEG R   AI  F  E+
Sbjct: 60  DLASRFGVSGFPTIKFFPKGK-KPVDYEGGRDLEAIVEFVNEK 101

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  143 bits (363), Expect = 3e-42
 Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS 220
           +EL   NFDELV  SKD  +VEF+APWCGHCK LAPE++K A  LK  GKV +  VDC +
Sbjct: 1   VELTDDNFDELVKDSKD-VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262
              L S++ V+G+PTI +F      P+ YEG RT  ++  F 
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  138 bits (349), Expect = 3e-40
 Identities = 52/99 (52%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQ 92
           LT +NF   VL+ N  VLVEFYAPWCGHC+ L P +EK A  LK      +A +DA   +
Sbjct: 1   LTASNFDEIVLS-NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131
            LA  +G+ GFPTIK F  GK PVDY+G RD++ I EF 
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFV 98

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  133 bits (338), Expect = 1e-38
 Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)

Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE 90
           V+LT +NF   V + +  VLVEFYAPWCGHC+AL P +EK A  LK  G   VA +D   
Sbjct: 1   VELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 91  HQSLAQEYGIRGFPTIKVFVPG-KPPVDYQGARDVKPIAEFA 131
           +  L  EYG+RG+PTIK+F  G K PV Y+G R ++ + EF 
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  132 bits (334), Expect = 6e-38
 Identities = 49/104 (47%), Positives = 61/104 (58%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
            V  LT  NF  +V  ++  VLV+FYAPWCG C+AL P +EK A   K     A +DA+E
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADE 60

Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
           +  LA EYG+RGFPTIK F  GK   DY GAR    +  F  + 
Sbjct: 61  NPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  127 bits (322), Expect = 3e-36
 Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
             L   NFDE V KS    +V+F+APWCG CK LAPE++K A   K  VK   VD D   
Sbjct: 3   KVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADENP 62

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIP--YEGARTAGAIESFALEQ 265
            L S++ V+GFPTI  F   K+      Y GART   + +F  + 
Sbjct: 63  DLASEYGVRGFPTIKFF---KNGKKVSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  136 bits (344), Expect = 8e-36
 Identities = 92/357 (25%), Positives = 141/357 (39%), Gaps = 55/357 (15%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDA 88
           V+ LT +NF    + ++  VLVEFYAPWCGHC++L P +EKAA  LK       +A +DA
Sbjct: 3   VLVLTKDNFDD-FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA 61

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPV-DYQGARDVKPIAEFALQQIKALLKERLSGKA 147
            E + LAQ+YG+ G+PT+K+F  G+  V DY G RD   I ++  +Q         SG A
Sbjct: 62  TEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQ---------SGPA 112

Query: 148 TGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL 207
                           E+ +    E  L   D+ ++ FF        +L   +   A  L
Sbjct: 113 --------------VKEIETVADLEAFLADDDVVVIGFFK---DLDSELNDTFLSVAEKL 155

Query: 208 KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD---KDSPIPYEGARTAGAIESFALE 264
           +          D      +K        +L    D   K S +  E       +E F   
Sbjct: 156 RDVYFFFAHSSDVAA--FAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKF--- 210

Query: 265 QLETNVAPP--EVTELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFKRGHY 312
            +     P   E T+ T+    E                         L  A+KF+    
Sbjct: 211 -IRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFV 269

Query: 313 SFVWAAAGK-QPDLENRVGVGGYGYPALVALNVKKGV-YTPLKSAFELEHIVEFVKE 367
           +F  A       +LE   G+    +PA+   +++    Y   +  F  E++  FVK+
Sbjct: 270 NFAVADEEDFGRELEY-FGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKD 325

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  124 bits (314), Expect = 5e-35
 Identities = 53/109 (48%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL--DA 88
           PV +LTP NF   V N N   LVEFYAPWCGHC+ L P + KAA  L G+  VAA+  D 
Sbjct: 1   PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP-----PVDYQGARDVKPIAEFAL 132
           ++++ L  +YG++GFPT+KVF P K        DY G R  K I +F L
Sbjct: 61  DKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  123 bits (310), Expect = 2e-34
 Identities = 44/102 (43%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCD- 219
           +EL  SNFD++V   K   +VEF+APWCGHCK LAPE++K A        V +  VD D 
Sbjct: 3   VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62

Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
           + K L  K+ V GFPT+  F      P+ YEG R    +  F
Sbjct: 63  ANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  122 bits (308), Expect = 4e-34
 Identities = 51/107 (47%), Positives = 64/107 (59%), Gaps = 6/107 (5%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE- 221
            EL   NFD++V  +    +VEF+APWCGHCK L PE+ KAA  L G V++  VDCD + 
Sbjct: 3   YELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK 62

Query: 222 -KSLMSKFNVQGFPTILVF----GADKDSPIPYEGARTAGAIESFAL 263
            K L  K+ VQGFPT+ VF     A K +   Y G R+A AI  F L
Sbjct: 63  NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score =  121 bits (305), Expect = 1e-33
 Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
             I L   +F ELVL  K+ W+V+F+APWCG C+ L PE +KAA  LKGKVK+G VDC  
Sbjct: 2   SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK 61

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEG-ARTAGAIESFA 262
            +SL  + N++ +PTI ++  +      Y G  R A +I  F 
Sbjct: 62  YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  116 bits (292), Expect = 7e-32
 Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV--AALDAN 89
           VV+LT +NF   V +    VLVEFYAPWCGHC+ L P +EK A V      V  A +DA+
Sbjct: 2   VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD 61

Query: 90  E-HQSLAQEYGIRGFPTIKVFVPG-KPPVDYQGARDVKPIAEF 130
           E ++ LA++YG+ GFPT+K F  G   PV Y+G RD++ + +F
Sbjct: 62  EANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  122 bits (309), Expect = 7e-31
 Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 20/163 (12%)

Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCDS 220
            L  S FD+  +   ++ +V+F+APWCGHCK+LAPE+KKAA  LK    ++ L  VD   
Sbjct: 36  VLTDSTFDKF-ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE 94

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTS 280
           E  L  +F V+G+PTI  F  +K +P+ Y G RTA  I S+ +++L      P VTE+ S
Sbjct: 95  EMELAQEFGVRGYPTIKFF--NKGNPVNYSGGRTADGIVSW-IKKLTG----PAVTEVES 147

Query: 281 QDVMEEKCGSAAICFYLEMLLSVAEKFK---------RGHYSF 314
              ++       + FY E     +E +K         R H  F
Sbjct: 148 ASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF 190

Length = 477

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score =  112 bits (282), Expect = 2e-30
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V+ LTP +F   VLN     LV+FYAPWCG CQAL P   KAA  LKG   V ++D  ++
Sbjct: 3   VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY 62

Query: 92  QSLAQEYGIRGFPTIKVFVP-GKPPVDYQG-ARDVKPIAEFA 131
           +SL Q+  IR +PTI+++         Y G  RD   I EF 
Sbjct: 63  ESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  106 bits (267), Expect = 3e-28
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 7/103 (6%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAA----TVLKGVATVAALD 87
           V++LT +NF   +  A G   V+F+APWCGHC+ L P WE+ A         V  +A +D
Sbjct: 2   VLELTEDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSV-KIAKVD 58

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
             +H+ L  E+ +RG+PT+ +F  G+    Y+G RD+  + EF
Sbjct: 59  CTQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  106 bits (266), Expect = 4e-28
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 9/106 (8%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA--TVAALDA 88
           PV  +   NF   VL+++  VLVEFYAPWCGHC+AL PI+E+ A  LKG     +A +DA
Sbjct: 1   PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDA 60

Query: 89  --NEHQSLAQEYGIRGFPTIKVFVPGK--PPVDYQGARDVKPIAEF 130
             N+  S   E+ + GFPTI  F  G    P+ Y+G R ++ + +F
Sbjct: 61  TANDVPS---EFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  103 bits (258), Expect = 5e-24
 Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 11/109 (10%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAA 85
             PV  L   NF   VL+    VLVEFYAPWCGHC+ L PI+E+ A   K   +   +A 
Sbjct: 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAK 404

Query: 86  LDA--NEHQSLAQEYGIRGFPTIKVFVPGK--PPVDYQGARDVKPIAEF 130
           +DA  N+       + + GFPTIK    GK   PV Y G R ++  ++F
Sbjct: 405 MDATANDVPP----FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKF 449

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  102 bits (257), Expect = 6e-24
 Identities = 69/251 (27%), Positives = 101/251 (40%), Gaps = 33/251 (13%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAAL 86
           S   V + T         +   VVL           + L   + +AA   +G     A  
Sbjct: 215 SLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVA 274

Query: 87  DANEHQSLAQEYGI--RGFPTIKVF---VPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
           D  +     + +G+    FP + +       K P             EF+ + ++A +K+
Sbjct: 275 DEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYP---------MDQEEFSSENLEAFVKD 325

Query: 142 RLSGKATGGSSDKS----KSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLA 197
            L GK       KS    + D      L   NFDE+VL      +VEF+APWCGHCK LA
Sbjct: 326 FLDGKLK--PYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLA 383

Query: 198 PEWKKAANNLKGK------VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS-PIPYE 250
           P +++ A   K         K+     D+  + +  F V+GFPTI    A K S P+PY+
Sbjct: 384 PIYEELAEKYKDAESDVVIAKM-----DATANDVPPFEVEGFPTIKFVPAGKKSEPVPYD 438

Query: 251 GARTAGAIESF 261
           G RT      F
Sbjct: 439 GDRTLEDFSKF 449

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 5/103 (4%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDAN 89
           VV LT  +F+ K L     VLV FYAPWCGHC+ + P + KAAT LK  G   +AA+D  
Sbjct: 2   VVHLTDEDFR-KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60

Query: 90  --EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
             EH +L +EY ++GFPT K F  GK    Y+G R  + I EF
Sbjct: 61  KPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 99.8 bits (249), Expect = 6e-23
 Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)

Query: 6   LLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQA 65
           LL+IL  F+ F     S   +  S  V  LT + F  K +  N +VLV+FYAPWCGHC+ 
Sbjct: 12  LLLILLAFAVFG----SAEEHFISEHVTVLTDSTFD-KFITENEIVLVKFYAPWCGHCKR 66

Query: 66  LTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           L P ++KAA +LK   +   +A++DA E   LAQE+G+RG+PTIK F     PV+Y G R
Sbjct: 67  LAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFF-NKGNPVNYSGGR 125

Query: 123 DVKPIAEFALQ 133
               I  +  +
Sbjct: 126 TADGIVSWIKK 136

Length = 477

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 92.0 bits (229), Expect = 8e-23
 Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWK---KAANNLKGKVKLGHVDC 218
            +EL   NFD  +  ++    V+FFAPWCGHCK+LAP W+   K  NN    VK+  VDC
Sbjct: 2   VLELTEDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC 59

Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
              + L S+F V+G+PT+L+F   +     Y+G R   +++ F
Sbjct: 60  TQHRELCSEFQVRGYPTLLLFKDGEK-VDKYKGTRDLDSLKEF 101

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 48/96 (50%), Positives = 61/96 (63%), Gaps = 4/96 (4%)

Query: 169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMS 226
           NFDE+VL S    +VEF+APWCGHCK LAP +++ A  LKG   V +  +D  +   + S
Sbjct: 9   NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDA-TANDVPS 67

Query: 227 KFNVQGFPTILVFGA-DKDSPIPYEGARTAGAIESF 261
           +F V GFPTIL F A DK +PI YEG RT   +  F
Sbjct: 68  EFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 91.0 bits (226), Expect = 2e-22
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 48  NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFP 104
             + LV+FYAPWCGHC+ L P+W +    LK   +   V  LDA  + S+A E+G+RG+P
Sbjct: 15  EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYP 74

Query: 105 TIKVFVPGKPPVDYQGARDVKPIAEFALQ 133
           TIK  + G    +Y+G R    I EFA +
Sbjct: 75  TIK-LLKGDLAYNYRGPRTKDDIVEFANR 102

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQG 232
           + +D+W+V+F+APWCGHCKKL P W +    LK     V++G +D  +  S+ S+F V+G
Sbjct: 13  RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG 72

Query: 233 FPTILVFGADKDSPIPYEGARTAGAIESFAL 263
           +PTI +   D      Y G RT   I  FA 
Sbjct: 73  YPTIKLLKGDLA--YNYRGPRTKDDIVEFAN 101

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 90.8 bits (225), Expect = 4e-21
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 17/145 (11%)

Query: 3   RSQLLVILTIFSFFA------RFNLSDALYGSSSPVVQLTPNNFKSKVLNAN-----GVV 51
           +  +L    +F   A      + +  DA     + +V L   NF+ K+  A+     G  
Sbjct: 2   KFIILACCILFGLIADEATNVKLDAEDA-----NALVLLNDKNFE-KLTQASTGATTGPW 55

Query: 52  LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111
            V+FYAPWC HC+ + P WE+ A  LKG   VA LDA    +LA+ + I+G+PT+ +F  
Sbjct: 56  FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115

Query: 112 GKPPVDYQGARDVKPIAEFALQQIK 136
           GK      G R  + +A FAL   K
Sbjct: 116 GKMYQYEGGDRSTEKLAAFALGDFK 140

Length = 224

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 87.0 bits (216), Expect = 5e-21
 Identities = 45/101 (44%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDC--DS 220
           L   +F +  LK +   +V F+APWCGHCKK+ PE+ KAA  LK  GK  L  VDC    
Sbjct: 5   LTDEDFRKF-LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE 63

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
             +L  ++NV+GFPT   F   K     YEG RTA  I  F
Sbjct: 64  HDALKEEYNVKGFPTFKYFENGKFV-EKYEGERTAEDIIEF 103

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 90.5 bits (224), Expect = 5e-21
 Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 7/129 (5%)

Query: 156 KSDSNESIELNSSNFDELVLKSKDL----WIVEFFAPWCGHCKKLAPEWKKAANNLKGKV 211
             D+N  + LN  NF++L   S       W V+F+APWC HC+K+AP W++ A  LKG+V
Sbjct: 26  AEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQV 85

Query: 212 KLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYE-GARTAGAIESFALEQLETNV 270
            +  +D     +L  +F ++G+PT+L+F  DK     YE G R+   + +FAL   +  +
Sbjct: 86  NVADLDATRALNLAKRFAIKGYPTLLLF--DKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143

Query: 271 APPEVTELT 279
             P    L+
Sbjct: 144 GAPVPAPLS 152

Length = 224

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 86.2 bits (214), Expect = 9e-21
 Identities = 33/96 (34%), Positives = 52/96 (54%)

Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           LT  NF   + +++  VLV+F+APWCG C+ + PI E+ A   +G      L+ +E+  +
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI 60

Query: 95  AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           A +YGIR  PT+ +F  GK      GA     + + 
Sbjct: 61  AAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQL 96

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALD 87
           PV+ L   +F S +L +    LVEFYA WCGHC+A  P W+K A  L+    V  VAA+D
Sbjct: 2   PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61

Query: 88  --ANEHQSLAQEYGIRGFPTIKVFVPGK 113
               E+ +L +++G+ G+PT++ F P  
Sbjct: 62  CADEENVALCRDFGVTGYPTLRYFPPFS 89

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           L  +NFDE +  S    +V+F+APWCG CK +AP  ++ A   +GKVK   ++ D    +
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI 60

Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
            +K+ ++  PT+L+F   K      E  R+ GA+   AL+QL
Sbjct: 61  AAKYGIRSIPTLLLFKNGK------EVDRSVGALPKAALKQL 96

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 82.2 bits (204), Expect = 2e-19
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 39  NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY 98
            F+  + +    V+V+F+APWCG C+A+ P+ E+ A           +D +E+  LA+EY
Sbjct: 2   EFEELIKS-AKPVVVDFWAPWCGPCKAIAPVLEELAE-EYPKVKFVKVDVDENPELAEEY 59

Query: 99  GIRGFPTIKVFVPGKPPVD-YQGARDVKPIAEF 130
           G+R  PT   F  GK  VD   GA   + + EF
Sbjct: 60  GVRSIPTFLFFKNGK-EVDRVVGADPKEELEEF 91

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 81.2 bits (201), Expect = 7e-19
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCD 219
           I L++++F+  +L S   W+VEF+A WCGHC+  AP WKK A +L+     V++  VDC 
Sbjct: 4   IVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63

Query: 220 SEKS--LMSKFNVQGFPTILVFGADK 243
            E++  L   F V G+PT+  F    
Sbjct: 64  DEENVALCRDFGVTGYPTLRYFPPFS 89

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATV 83
           S +V LT  N    +L +  +VLV FYA WC   Q L PI+E+AA  +K      G    
Sbjct: 1   SEIVSLTSGNID-DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVW 59

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPP-VDYQGARDVKPIAEF 130
             +D ++   +A  Y I  +PT+K+F  G     +Y+G R V+ +AEF
Sbjct: 60  GKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEF 107

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 27  GSSSPVVQLTPNNFKSKVLNANGV--VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
            ++  +  +T  NF+ +V+ ++    VLV+F+APWCG C+ LTP  EK A   KG   +A
Sbjct: 20  MAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLA 79

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLS 144
            ++ +    +A ++G++  PT+  F  G+P   +QGA+    + +F L ++    +E   
Sbjct: 80  KVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQF-LDKVLPAEEEEAL 138

Query: 145 GKATG 149
            +A  
Sbjct: 139 AEAKE 143

Length = 304

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E + L+  +FD  V  S ++W V F++P C HC  LAP W++ A  + G +++G V+C  
Sbjct: 2   EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD 60

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262
           ++ L     V  +P++ VF +   +P  Y G R+  ++  FA
Sbjct: 61  DRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKESLVKFA 101

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 38/102 (37%), Positives = 61/102 (59%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 61

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 62  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 103

Length = 109

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK 227
             F+EL+  +K + +V+F+APWCG CK +AP  ++ A     KVK   VD D    L  +
Sbjct: 1   EEFEELIKSAKPV-VVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEE 58

Query: 228 FNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
           + V+  PT L F  G + D      GA     +E F
Sbjct: 59  YGVRSIPTFLFFKNGKEVDR---VVGADPKEELEEF 91

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 72  KAATVLKGVATVAALDANEHQSLAQE-YGIRGFPTIK--------VFVPGKPPVDYQGAR 122
           K A  L+       LD  +  S A+E   I  FP +         +  P K   D     
Sbjct: 271 KVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFD----- 325

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWI 182
            V+ + EF  + ++A   E+ S K    S    +        +  + F+E+V KS    +
Sbjct: 326 SVEALIEF-FKDVEAGKVEK-SIK----SEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVL 379

Query: 183 VEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240
           +E +APWCGHCK L P + +     K    + +  ++  + ++ + +F+   FPTIL   
Sbjct: 380 LEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVK 439

Query: 241 ADKDSPIPYEGARTAGAIESF 261
           A + +PIPYEG RT    + F
Sbjct: 440 AGERTPIPYEGERTVEGFKEF 460

Length = 477

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           +V L   +F + V N+  +  V FY+P C HC  L P W + A  + GV  + A++  + 
Sbjct: 3   IVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131
           + L +  G+  +P++ VF  G  P  Y G R  + + +FA
Sbjct: 62  RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKFA 101

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT--VAAL 86
             PV  +  N F+  V  ++  VL+E YAPWCGHC+ L P++ +     K   +  VA +
Sbjct: 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKM 415

Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPG-KPPVDYQGARDVKPIAEF 130
           +   +++  +E+    FPTI     G + P+ Y+G R V+   EF
Sbjct: 416 NGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEF 460

Length = 477

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK------GKVKLG 214
           E + L S N D+ +L+S +L +V F+A WC   + L P +++AA  +K      GKV  G
Sbjct: 2   EIVSLTSGNIDD-ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWG 60

Query: 215 HVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
            VDCD E  +  ++ +  +PT+ +F         Y G R+  A+  F
Sbjct: 61  KVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEF 107

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLW--IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG 214
             +    ++  +NF++ V++S      +V+F+APWCG CK+L P  +K A   KGK KL 
Sbjct: 20  MAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLA 79

Query: 215 HVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPE 274
            V+CD+E  + ++F VQ  PT+  F   +  P+        GA     L Q    V P E
Sbjct: 80  KVNCDAEPMVAAQFGVQSIPTVYAFKDGQ--PV----DGFQGAQPESQLRQFLDKVLPAE 133

Query: 275 VTELTSQD 282
             E  ++ 
Sbjct: 134 EEEALAEA 141

Length = 304

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE 221
           +EL  SN+  ++   +  W++EF+APWC  C++L PEW++ A+      + +  VD   E
Sbjct: 4   VELTDSNWTLVL---EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60

Query: 222 KSLMSKFNVQGFPTILVFGADKDSPI-PYEGARTAGAIESFALE 264
             L  +F V   PTI  + A KD     Y+G R    + SF  E
Sbjct: 61  PGLSGRFFVTALPTI--YHA-KDGVFRRYQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 9/102 (8%)

Query: 39  NFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE 97
           NF+  +  +  V V+V+F+AP     + L P+ E+ A   +G   +A ++ +    +AQ+
Sbjct: 2   NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQ 61

Query: 98  YGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL 139
           +G++  PT+ +F  G+P   +QGA+          +Q++ +L
Sbjct: 62  FGVQALPTVYLFAAGQPVDGFQGAQP--------EEQLRQML 95

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 64.3 bits (156), Expect = 6e-13
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ 
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 61

Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
           D       K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  DQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 109

Length = 109

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 141 ERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW 200
           ER+   A  G          E I       D+L L+     +++F+APWCG C+  AP +
Sbjct: 17  ERIEDAAKCGRC-GHDLFDGEVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIF 74

Query: 201 KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
           +  A    GKV+   V+ ++E+ L ++F ++  PTI++F
Sbjct: 75  EDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113

Length = 139

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 46  NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105
           N      V FYA WC    +  P +   +++   +  +A  +++   SL   YG+ GFPT
Sbjct: 16  NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPT 75

Query: 106 IKVFVPGKPPVDYQGARDVKPIAEF 130
           I +     P V Y G R +  +A F
Sbjct: 76  I-LLFNSTPRVRYNGTRTLDSLAAF 99

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V+  T      K+L  +  V+++F+APWCG C+   PI+E  A    G      ++    
Sbjct: 37  VINATGETL-DKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE 95

Query: 92  QSLAQEYGIRGFPTIKVFVPGK 113
           + L+  + IR  PTI +F  G+
Sbjct: 96  RELSARFRIRSIPTIMIFKNGQ 117

Length = 139

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 168 SNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS 226
            NF +++ +S     +V+F+AP     K+L P  ++ A   +G+  L  V+CD++  +  
Sbjct: 1   QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ 60

Query: 227 KFNVQGFPTILVFGADKDSPIP-YEGARTAGAIE 259
           +F VQ  PT+ +F A +  P+  ++GA+    + 
Sbjct: 61  QFGVQALPTVYLFAAGQ--PVDGFQGAQPEEQLR 92

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 60.3 bits (145), Expect = 3e-11
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 48  NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYG--IRGFP 104
              VLV+F+APWC  C+A  P+ E+ A    G   V A++ + E+  LA E+G  +R  P
Sbjct: 32  GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIP 91

Query: 105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLK 140
           T+ +F  GK  VD      V P  E  +  +  LL 
Sbjct: 92  TLLLFKDGK-EVDRLVGGKVLP-KEALIDALGELLA 125

Length = 127

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 43  KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRG 102
             L+ N +V+V+FYA WCG C+ + P +E+ +     +  V  +D +E   +A++  I  
Sbjct: 13  STLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFV-KVDVDELSEVAEKENITS 71

Query: 103 FPTIKVFVPGKPPVDYQGARD 123
            PT KVF  G       GA D
Sbjct: 72  MPTFKVFKNGSVVDTLLGAND 92

Length = 98

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 22/187 (11%)

Query: 194 KKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA- 252
             L   ++KAA  L+G V+ G      +K +  K+ ++  PTIL+F    +  + Y G  
Sbjct: 6   DPLYEIFEKAAKELRGDVRFGVT---FDKEVAKKYGIK-EPTILLFRKFDEKQVTYPGED 61

Query: 253 -RTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF----------YLEMLL 301
             T   ++ F  +     V   E T   ++++ E   G   + F              + 
Sbjct: 62  KTTFDDLKKFIQKNSLPLV--GEFTPENAEELFES--GKPLLLFIKKDSEETEKLKNRVE 117

Query: 302 SVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKG-VYTPLKSAFELEH 360
            VA+KFK G  +F          +   +G+     P +V ++          +  F  E 
Sbjct: 118 EVAKKFK-GKINFATVDGKSFGRVLEYLGLSSADLPVIVIVDSASHKKKYFPEDEFSPES 176

Query: 361 IVEFVKE 367
           + EF+ +
Sbjct: 177 LKEFLND 183

Length = 183

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 15/107 (14%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT-VAALDA 88
           S VV+LT +N+ + VL   G  ++EFYAPWC  CQ L P WE+ A     +   VA +D 
Sbjct: 1   SNVVELTDSNW-TLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDV 57

Query: 89  NEHQSLAQEYGIRGFPTI-----KVFVPGKPPVDYQGARDVKPIAEF 130
            +   L+  + +   PTI      VF        YQG RD + +  F
Sbjct: 58  TQEPGLSGRFFVTALPTIYHAKDGVF------RRYQGPRDKEDLISF 98

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 52  LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE---YGIRGFPTIKV 108
           LV FYAPWC  CQAL P+  + A + KGV    A+D +E  +L +E   YG+ G PT+ V
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGV-KFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 109 FVPGKP 114
           F PG  
Sbjct: 60  FGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFN--VQG 232
           +     +V  +APWC  C+ +   +++ A  L G  VK+   + D E+   +K    ++ 
Sbjct: 19  RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS 78

Query: 233 FPTILVFGADKDSPIPYEG-ARTAGAIESFA 262
           FPTIL F  +   PI Y    R   ++  F 
Sbjct: 79  FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---EKSLMSKFNVQGFPTILV 238
           +V F+APWC  C+ L P   + A   KG VK   VD D     +  + ++ V G PT++V
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKG-VKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 239 FGAD 242
           FG  
Sbjct: 60  FGPG 63

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 16/94 (17%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANN---LKGKVKLGHVDCD-------------SEKSLM 225
           +V F  P C +CKKL  E  K  +    LK    + +V+ D             SEK L 
Sbjct: 9   LVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELA 68

Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIE 259
            K+ V+G PTI+    D        G        
Sbjct: 69  RKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFL 102

Length = 105

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 54.3 bits (130), Expect = 6e-08
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 140 KERLSGKATGGSSDKSKS--DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKK 195
           +E L G   G  SD      DSN  + L+    + L+   + K+ W+V  +APWC  C+ 
Sbjct: 329 EETLDGAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQA 388

Query: 196 LAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQ--GFPTILVFGADKDSPIPY 249
           +   + + A  L G  VK+     D ++   +K  +Q   FPTIL F      PI Y
Sbjct: 389 MEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKY 445

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 50.3 bits (119), Expect = 8e-08
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-DSEKSLMSKFN--VQGFPTILV 238
           +V+F+APWC  C+  AP  ++ A    G V++  V+  D    L ++F   V+  PT+L+
Sbjct: 36  LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL 95

Query: 239 F 239
           F
Sbjct: 96  F 96

Length = 127

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQ--GFP 234
           K+ W+V  +APWC  C+ +   +++ A  L G  VK+     D ++   +K  +Q   FP
Sbjct: 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424

Query: 235 TILVFGADKDSPIPY 249
           TIL+F  +   PI Y
Sbjct: 425 TILLFPKNSSRPIKY 439

Length = 457

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231
           E  L   +L IV+F+A WCG CK++AP +++ +     K+    VD D    +  K N+ 
Sbjct: 12  ESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENIT 70

Query: 232 GFPTILVF 239
             PT  VF
Sbjct: 71  SMPTFKVF 78

Length = 98

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 46  NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG----VATVAALDANEHQSLAQEYGIR 101
             N   LV  YAPWC  CQA+   +E+ A  L G    VA   A D  + +   +E  ++
Sbjct: 19  RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNA-DGEQREFAKEELQLK 77

Query: 102 GFPTIKVFVPG-KPPVDYQG-ARDVKPIAEFA 131
            FPTI  F    + P+ Y    RDV  +  F 
Sbjct: 78  SFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 19/80 (23%)

Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-------------EHQSLAQE 97
           V V+F A WC  C+           V       AAL  +             E  +L + 
Sbjct: 14  VFVDFTADWCVTCKVN------EKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKR 67

Query: 98  YGIRGFPTIKVFVPGKPPVD 117
           +G+ G PT   + PG  P  
Sbjct: 68  FGVFGPPTYLFYGPGGEPEP 87

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-DSEKSLMSKFNVQGFPTIL 237
           ++ +V ++APW    +    E+++ A  L  +V    ++C   +     + +   FP I 
Sbjct: 30  EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIH 89

Query: 238 VFGADKDSPIPYEGARTAGAIESF 261
           ++   +  PI Y+G   A  +E F
Sbjct: 90  LYYRSRG-PIEYKGPMRAPYMEKF 112

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 47  ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106
           ++ ++LV + +P CG C+ L PI  K      G      +D +E Q +A+  GI G PT+
Sbjct: 12  SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTV 71

Query: 107 KVF 109
           + F
Sbjct: 72  QFF 74

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 17/97 (17%)

Query: 51  VLVEFYAPWCGHCQALTP-IWEKAATV--LKGVATVAALDANEHQS-------------L 94
           VLV F  P C +C+ L   + +       LK    V  ++ ++ +              L
Sbjct: 8   VLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKEL 67

Query: 95  AQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEF 130
           A++YG+RG PTI      GK      G    +   + 
Sbjct: 68  ARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKL 104

Length = 105

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 52  LVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDAN-EHQSLA-QEYGIRGFPTIK 107
           LV  YAPWC  CQA+   +E+ A  L   GV  VA   A+ + +  A QE  +  FPTI 
Sbjct: 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGV-KVAKFRADGDQKEFAKQELQLGSFPTIL 427

Query: 108 VFVPGKP-PVDYQGA-RDV 124
           +F      P+ Y    RDV
Sbjct: 428 LFPKNSSRPIKYPSEKRDV 446

Length = 457

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 26/88 (29%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLK-GKVKLGHVDCDSEKS----------------- 223
           ++ F+A WC  C+   PE K+    LK  KV++ +V  D ++                  
Sbjct: 5   LLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEWKKYLKKMPKDWLNVP 64

Query: 224 --------LMSKFNVQGFPTILVFGADK 243
                   L+  + V+  PT+++   D 
Sbjct: 65  FGDKERNELLRLYGVKAIPTLVLLDKDG 92

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK--SLMSKFNVQGFPTILVF 239
           +VEF+A WC  C+++AP+  K       +V    ++ D+ K    + ++ V G P  +  
Sbjct: 24  LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFL 83

Query: 240 GAD 242
             +
Sbjct: 84  DRE 86

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 35  LTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVL----KGVATVAALDA 88
           LT + ++++++  +     L++  + WC  C  + P+W++    L     G+ATV   +A
Sbjct: 9   LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATV---NA 65

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131
              + LA++ G    P I   + G+    +  +   + + +F 
Sbjct: 66  GHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFV 108

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 171 DELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKF 228
           +E+V KS K  ++++  + WC  C  + P WK+    L+   V +  V+   E+ L  K 
Sbjct: 16  NEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKL 75

Query: 229 NVQGFPTILV 238
                P I+ 
Sbjct: 76  GAHSVPAIVG 85

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           N +++L + N ++          V F+A WC       P +   ++      ++ H+  +
Sbjct: 7   NIALDLMAFNREDYTA-------VLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIE 56

Query: 220 SE---KSLMSKFNVQGFPTILVF 239
                 SL+S++ V GFPTIL+F
Sbjct: 57  ESSIKPSLLSRYGVVGFPTILLF 79

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239270 cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 32/91 (35%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL--------GHVDCDSEKS---------- 223
           IVEFF P C +C    PE +K      G V++        G +  +S  +          
Sbjct: 1   IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ 60

Query: 224 --------------LMSKFNVQGFPTILVFG 240
                         L     V G PT +V G
Sbjct: 61  GKFEALHEALADTALARALGVTGTPTFVVNG 91

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. Length = 98

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 52  LVEFYAPWCGHCQALTPIWEKAATVLKG----VATVAALDANEHQSLAQEYGIRGFPTIK 107
           LV  YAPWC  CQA+   + + A  L G    VA   A D ++ +   QE  +  FPTI 
Sbjct: 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRA-DGDQKEFAKQELQLGSFPTIL 433

Query: 108 VFVPGKP-PVDYQGA-RDVKPIAEF 130
            F      P+ Y    RDV  +  F
Sbjct: 434 FFPKHSSRPIKYPSEKRDVDSLMSF 458

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 24/85 (28%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGK-VK-LG-HVD--------------------- 217
           +V F+A WC  C+   PE +  A   K   V+ +G +VD                     
Sbjct: 23  LVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVL 82

Query: 218 CDSEKSLMSKFNVQGFPTILVFGAD 242
            D +  L   + V+G PT  +   D
Sbjct: 83  LDPDGELAKAYGVRGLPTTFLIDRD 107

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 29  SSPVVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
            SPV+                  V LV +YAPW    QA    +E+ A  L       A+
Sbjct: 8   RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAI 67

Query: 87  DANEHQSLAQ-EYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +    Q   + +     FP I ++   + P++Y+G      + +F
Sbjct: 68  NCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 16/87 (18%)

Query: 165 LNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEW-----KKAANNLK-GKVKLGHVD 217
                 +E + + K   W+VEFF  W   C   AP +     K   NNLK GK+ +G   
Sbjct: 33  FTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92

Query: 218 CDSEK-----SLMSKFNVQGFPTILVF 239
             +EK     S +SK      PTI++F
Sbjct: 93  NVAEKFRVSTSPLSK----QLPTIILF 115

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 21/83 (25%)

Query: 51  VLVEFYAPWCGHCQALTPIWEKAA---TVLKGVATVAALDA------NEHQ--------- 92
           VLV F+A WC  C+  +P   + A    V+  VA  +  D        +           
Sbjct: 23  VLVYFWATWCPVCRFTSPTVNQLAADYPVV-SVALRSGDDGAVARFMQKKGYGFPVINDP 81

Query: 93  --SLAQEYGIRGFPTIKVFVPGK 113
              ++  +G+   P I +  PG 
Sbjct: 82  DGVISARWGVSVTPAIVIVDPGG 104

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235
           +S  L +V + +P CG C+ L P   K  +   G V    +D D ++ +     + G PT
Sbjct: 11  ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPT 70

Query: 236 ILVF 239
           +  F
Sbjct: 71  VQFF 74

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 24/80 (30%)

Query: 50  VVLVEFYAPWCGHCQALTPIWEKAA--TVLKGVATVA-ALDAN----------------- 89
           VVLV F+A WC  C+A  P  E  A      GV  V   +D +                 
Sbjct: 21  VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFP 80

Query: 90  ----EHQSLAQEYGIRGFPT 105
                   LA+ YG+RG PT
Sbjct: 81  VLLDPDGELAKAYGVRGLPT 100

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 35/199 (17%)

Query: 69  IWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP-GKPPVDYQGA--RDVK 125
           I+EKAA  L+G          E   +A++YGI+  PTI +F    +  V Y G       
Sbjct: 11  IFEKAAKELRGDVRFGVTFDKE---VAKKYGIK-EPTILLFRKFDEKQVTYPGEDKTTFD 66

Query: 126 PIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEF 185
            + +F  +    L+                        E    N +EL        ++ F
Sbjct: 67  DLKKFIQKNSLPLV-----------------------GEFTPENAEELF--ESGKPLLLF 101

Query: 186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG--FPTILVFGADK 243
                   +KL    ++ A   KGK+    VD  S   ++    +     P I++  +  
Sbjct: 102 IKKDSEETEKLKNRVEEVAKKFKGKINFATVDGKSFGRVLEYLGLSSADLPVIVIVDSAS 161

Query: 244 DS-PIPYEGARTAGAIESF 261
                  E   +  +++ F
Sbjct: 162 HKKKYFPEDEFSPESLKEF 180

Length = 183

>gnl|CDD|239270 cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 37/102 (36%)

Query: 52  LVEFYAPWCGHCQALTPIWEKAATVLKGVATV---------------------------- 83
           +VEF+ P C +C    P  EK      G   V                            
Sbjct: 1   IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ 60

Query: 84  ----AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
               A  +A    +LA+  G+ G PT    V G+    Y GA
Sbjct: 61  GKFEALHEALADTALARALGVTGTPTF--VVNGEK---YSGA 97

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. Length = 98

>gnl|CDD|239367 cd03069, PDI_b_ERp57, PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           S+EL +    E  L   D  +V FF        KL  E+ KAA+ L+   +  H    S+
Sbjct: 2   SVELRTEAEFEKFLSDDDASVVGFFE---DEDSKLLSEFLKAADTLRESFRFAHT---SD 55

Query: 222 KSLMSKFNVQGFPTILVFGADK------DSPIPYEGARTAGAIESFALE 264
           K L+ K+       +++F   +      DS + ++G   +  I+ F  E
Sbjct: 56  KQLLEKYGYG--EGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIRE 102

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates. Length = 104

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG 79
          VVL+ F+A WC  C+A TP  ++    LK 
Sbjct: 3  VVLLYFWASWCPPCRAFTPELKELYEKLKK 32

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239279 cd02981, PDI_b_family, Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
             EL S    E  L   D+ +V FF        K    ++K A +L+     GH    S+
Sbjct: 1   VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYK---TFEKVAESLRDDYGFGHT---SD 54

Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
           K +  K  V+   ++++F   ++ P+ Y+G  T  ++  F
Sbjct: 55  KEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEFTEESLVEF 93

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Length = 97

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 51  VLVEFYAPWCGHCQALTPIWEKAATV---LKGVATVAALDANEHQSLAQEYGIRGFPTIK 107
           +LV+F A WC  CQAL   +     V    +    +         +L  +   +G P + 
Sbjct: 20  LLVDFGADWCPTCQALDRDFLSDPRVKALAEKFVLLRVDVTTRDPNLLLDG--QGVPHVV 77

Query: 108 VFVP 111
              P
Sbjct: 78  FLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 46  NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN------EHQSLAQEYG 99
                V+++FYA WC  C+           V + +  V  L A+         +L +  G
Sbjct: 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG 531

Query: 100 IRGFPTIKVFVP-GKPPVD 117
           + G PT   F P G  P  
Sbjct: 532 VFGVPTYLFFGPQGSEPEI 550

Length = 569

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.97
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.97
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.96
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.94
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.93
PTZ00102	477	disulphide isomerase; Provisional	99.9
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.88
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.87
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.86
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.86
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.85
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.84
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.84
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.83
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.82
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.82
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.81
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.8
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.8
PRK09381	109	trxA thioredoxin; Provisional	99.79
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.78
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.78
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.78
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.78
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.77
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.77
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.77
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.77
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.76
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.76
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.75
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.75
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.75
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.75
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.74
PHA02278	103	thioredoxin-like protein	99.74
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.74
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.74
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.74
PRK10996	139	thioredoxin 2; Provisional	99.74
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.74
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.73
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.73
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.73
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.72
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.72
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.71
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.71
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.71
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.7
PTZ00062	204	glutaredoxin; Provisional	99.7
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.7
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.7
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.7
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.7
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.69
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.69
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.68
PRK09381	109	trxA thioredoxin; Provisional	99.68
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.68
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.67
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.67
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.67
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.66
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.66
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.66
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.66
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.66
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.65
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.65
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.65
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.65
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.64
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.64
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.64
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.63
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.63
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.63
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.62
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.62
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.61
PLN02309	457	5'-adenylylsulfate reductase	99.61
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.61
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.61
PHA02278	103	thioredoxin-like protein	99.6
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.6
PRK10996	139	thioredoxin 2; Provisional	99.6
PTZ00051	98	thioredoxin; Provisional	99.6
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.59
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.58
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.57
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.57
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.56
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.54
PLN02309	457	5'-adenylylsulfate reductase	99.54
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.54
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.54
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.53
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.53
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.52
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.52
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.52
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.52
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.52
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.5
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.5
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.49
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.48
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.47
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.46
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.45
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.44
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.43
PTZ00051	98	thioredoxin; Provisional	99.43
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.43
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.41
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.41
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.39
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.38
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.37
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.37
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.36
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.35
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.34
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.34
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.34
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.33
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.33
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.32
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.31
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.31
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.31
PTZ00062	204	glutaredoxin; Provisional	99.28
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.25
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.24
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.23
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.2
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.17
PHA02125	75	thioredoxin-like protein	99.17
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.16
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.16
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.16
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.11
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.1
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.08
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.08
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.08
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.05
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.05
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.03
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.02
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.02
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.01
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.0
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.99
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.98
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.98
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.98
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.97
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.94
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.89
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.88
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.87
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.86
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.85
smart00594	122	UAS UAS domain.	98.85
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.85
PHA02125	75	thioredoxin-like protein	98.85
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.84
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.83
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.83
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.82
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.82
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.81
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.8
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.79
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.79
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.78
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.77
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.76
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.76
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.75
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.75
PTZ00056	199	glutathione peroxidase; Provisional	98.71
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.71
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.7
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.69
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.69
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.69
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.68
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.68
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.66
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.64
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.63
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.63
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.6
PLN02412	167	probable glutathione peroxidase	98.6
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.59
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.59
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.59
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.58
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.57
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.53
smart00594	122	UAS UAS domain.	98.52
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.5
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.48
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.47
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.44
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.44
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.41
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.41
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.4
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.38
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.38
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.35
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.35
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.33
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.31
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.3
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.21
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.21
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.2
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.2
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.15
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.15
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.14
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.13
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.13
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.11
PTZ00256	183	glutathione peroxidase; Provisional	98.1
PF13728	215	TraF: F plasmid transfer operon protein	98.09
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.09
PF13728	215	TraF: F plasmid transfer operon protein	98.09
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.07
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	98.05
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.05
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.05
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.03
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.03
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.03
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.02
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.02
PTZ00056	199	glutathione peroxidase; Provisional	98.01
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.01
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.01
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.0
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.99
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.97
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.96
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.96
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.91
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.91
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.89
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.89
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.89
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.87
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.86
PLN02412	167	probable glutathione peroxidase	97.86
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.86
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.85
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.83
PRK11200	85	grxA glutaredoxin 1; Provisional	97.82
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.81
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.8
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.77
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.77
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.76
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.73
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.73
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.72
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.72
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.72
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.72
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.72
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.71
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.67
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.64
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.64
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.63
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	97.6
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.6
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.59
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.57
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.54
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.54
PTZ00256	183	glutathione peroxidase; Provisional	97.53
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.52
PRK15000	200	peroxidase; Provisional	97.51
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.5
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.5
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.47
PRK13190	202	putative peroxiredoxin; Provisional	97.44
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.42
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.42
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.36
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.36
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.35
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.33
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.31
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.3
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.29
PRK11200	85	grxA glutaredoxin 1; Provisional	97.29
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.28
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.28
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.27
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.26
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.25
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.21
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.18
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.18
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.15
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.14
PRK13599	215	putative peroxiredoxin; Provisional	97.13
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.12
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.12
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.12
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.09
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.07
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	97.06
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.04
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.02
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.01
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.01
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.98
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.95
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.94
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.92
PRK13189	222	peroxiredoxin; Provisional	96.91
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.9
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.86
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.86
PRK13191	215	putative peroxiredoxin; Provisional	96.84
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.82
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	96.81
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.79
PTZ00253	199	tryparedoxin peroxidase; Provisional	96.78
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.78
PRK10329	81	glutaredoxin-like protein; Provisional	96.78
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	96.78
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.75
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.74
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	96.73
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.64
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.62
PRK15000	200	peroxidase; Provisional	96.6
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	96.59
PRK13190	202	putative peroxiredoxin; Provisional	96.58
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.58
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.55
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	96.54
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	96.53
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.52
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.51
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.5
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.49
PHA03050	108	glutaredoxin; Provisional	96.4
PRK10329	81	glutaredoxin-like protein; Provisional	96.34
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.31
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	96.27
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.23
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.2
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	96.19
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.19
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.19
PHA03050	108	glutaredoxin; Provisional	96.14
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	96.03
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.0
PTZ00137	261	2-Cys peroxiredoxin; Provisional	95.95
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	95.88
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.7
PRK10638	83	glutaredoxin 3; Provisional	95.59
PRK13189	222	peroxiredoxin; Provisional	95.58
PRK13599	215	putative peroxiredoxin; Provisional	95.52
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	95.51
PRK10606	183	btuE putative glutathione peroxidase; Provisional	95.39
KOG3171	273	consensus Conserved phosducin-like protein [Signal	95.38
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	95.37
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	95.31
PRK13191	215	putative peroxiredoxin; Provisional	95.19
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.14
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	94.94
PRK10638	83	glutaredoxin 3; Provisional	94.9
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	94.9
KOG2640	319	consensus Thioredoxin [Function unknown]	94.81
PTZ00253	199	tryparedoxin peroxidase; Provisional	94.78
PRK10824	115	glutaredoxin-4; Provisional	94.77
KOG3170	240	consensus Conserved phosducin-like protein [Signal	94.69
KOG3170	240	consensus Conserved phosducin-like protein [Signal	94.0
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	93.9
PRK10824	115	glutaredoxin-4; Provisional	93.81
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	93.79
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	92.98
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	92.84
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	92.75
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	92.48
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	92.48
KOG3171	273	consensus Conserved phosducin-like protein [Signal	92.46
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	92.38
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	91.51
COG1331	667	Highly conserved protein containing a thioredoxin	91.28
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	91.19
KOG2640	319	consensus Thioredoxin [Function unknown]	90.89
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	90.56
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	90.56
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	90.52
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	90.46
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	89.68
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	89.13
cd02978	72	KaiB_like KaiB-like family; composed of the circad	88.7
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	88.1
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	87.87
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	87.76
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	86.58
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	86.04
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	84.5
COG3019	149	Predicted metal-binding protein [General function	84.46
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	83.97
PRK09301	103	circadian clock protein KaiB; Provisional	83.8
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	83.78
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	82.79
cd02978	72	KaiB_like KaiB-like family; composed of the circad	82.1
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	80.75

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-35  Score=270.63  Aligned_cols=313  Identities=31%  Similarity=0.481  Sum_probs=258.8

Q ss_pred             CCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcc
Q 015217           27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        27 ~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      .....+.+|+.++|+ ..+..+..++|.||||||+||+++.|++++++..+..   .+.+++|||+++..+|.+|+|+||
T Consensus        22 ~~~~~Vl~Lt~dnf~-~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy  100 (493)
T KOG0190|consen   22 KAEEDVLVLTKDNFK-ETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY  100 (493)
T ss_pred             CcccceEEEecccHH-HHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence            567889999999999 7788899999999999999999999999999999986   589999999999999999999999


Q ss_pred             cEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEE
Q 015217          104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV  183 (411)
Q Consensus       104 P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv  183 (411)
                      ||+.+|++|+....|.|+++.+.|+.|+.+.                       ..+.+..+......+.+......++|
T Consensus       101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq-----------------------~gPa~~~l~~~~~a~~~l~~~~~~vi  157 (493)
T KOG0190|consen  101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQ-----------------------SGPASKTLKTVDEAEEFLSKKDVVVI  157 (493)
T ss_pred             CeEEEEecCCcceeccCcccHHHHHHHHHhc-----------------------cCCCceecccHHHHHhhccCCceEEE
Confidence            9999999998779999999999999999976                       46778888766655555666667777


Q ss_pred             EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccc--ccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG--FPTILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~--~P~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      .|+.+.-    .....+..+|..+.+.+.|+.   +++.+++++++...  .|.+++++...+....|.|.++.+.|.+|
T Consensus       158 g~F~d~~----~~~~~~~~~a~~l~~d~~F~~---ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~F  230 (493)
T KOG0190|consen  158 GFFKDLE----SLAESFFDAASKLRDDYKFAH---TSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKF  230 (493)
T ss_pred             EEecccc----cchHHHHHHHHhccccceeec---cCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHH
Confidence            7776542    223677888888888899994   66888999988763  45588888777777888899999999999


Q ss_pred             HHHHhhhcCCCCCceEeCChhHHHHhcCC---ccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHH
Q 015217          262 ALEQLETNVAPPEVTELTSQDVMEEKCGS---AAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENR  328 (411)
Q Consensus       262 i~~~~~~~~~~~~v~~l~~~~~~~~~~~~---~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~  328 (411)
                      |..+..     |.+.+++.......+.+.   +.+++          +.+.+..+|++|++. +.|+.+|..+....+..
T Consensus       231 i~~~~~-----plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~-l~Fi~~d~e~~~~~~~~  304 (493)
T KOG0190|consen  231 IQENSL-----PLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGK-LRFILIDPESFARVLEF  304 (493)
T ss_pred             HHHhcc-----cccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccc-eEEEEEChHHhhHHHHh
Confidence            988854     888888886654444331   22222          558999999999997 99999988888889999


Q ss_pred             hCCCCCCCC-eEEEeecCCCccccCCCCCChhHHHHHHHHHccCCCCCC
Q 015217          329 VGVGGYGYP-ALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNL  376 (411)
Q Consensus       329 f~~~~~~~P-~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~  376 (411)
                      ||+.....| .+++.+....+|.+-.+..+.++|+.|+.++++|+.+..
T Consensus       305 ~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~  353 (493)
T KOG0190|consen  305 FGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPH  353 (493)
T ss_pred             cCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccc
Confidence            999977777 555666666788655566999999999999999987655

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=8.8e-32  Score=263.57  Aligned_cols=298  Identities=28%  Similarity=0.474  Sum_probs=235.1

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEeccccHhHHHhcCCCccc
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      ....+..++.++|+ .++.+++.++|.||++||++|+++.|.|.+++..+.   +++.++.|||+++.++|++|+|.++|
T Consensus        30 ~~~~v~~l~~~~f~-~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P  108 (477)
T PTZ00102         30 ISEHVTVLTDSTFD-KFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP  108 (477)
T ss_pred             cCCCcEEcchhhHH-HHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence            34678999999999 566778899999999999999999999999998775   36999999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEE
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVE  184 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~  184 (411)
                      ++++|++|+.. +|.|.++.+.+.+|+.+.+                       .+.+..++...-.........+.++.
T Consensus       109 t~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~  164 (477)
T PTZ00102        109 TIKFFNKGNPV-NYSGGRTADGIVSWIKKLT-----------------------GPAVTEVESASEIKLIAKKIFVAFYG  164 (477)
T ss_pred             EEEEEECCceE-EecCCCCHHHHHHHHHHhh-----------------------CCCceeecCHHHHHHhhccCcEEEEE
Confidence            99999998765 9999999999999999874                       46677777655444333444556665


Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      ++....   ......|.++|..++....|+.+.-.            ..|.+.+|+.... ...+.+..+.++|.+||..
T Consensus       165 ~~~~~~---~~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~fI~~  228 (477)
T PTZ00102        165 EYTSKD---SELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKDEE-GVELFMGKTKEELEEFVST  228 (477)
T ss_pred             EeccCC---cHHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecCCC-CcccCCCCCHHHHHHHHHH
Confidence            555432   57888999999999988878764311            2366788876544 4444445688999999988


Q ss_pred             HhhhcCCCCCceEeCChhHHHHhcCCccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchh-hHHHhCCCC
Q 015217          265 QLETNVAPPEVTELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPD-LENRVGVGG  333 (411)
Q Consensus       265 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~-~~~~f~~~~  333 (411)
                      +.     .|.+.+++..+.......+..+++          +.+.++.+|++|+++ +.|+++|....+. +++.||+..
T Consensus       229 ~~-----~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~~~~~~~~~~gi~~  302 (477)
T PTZ00102        229 ES-----FPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVVRKVARKLREK-YAFVWLDTEQFGSHAKEHLLIEE  302 (477)
T ss_pred             cC-----CCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHHHHHHHhccCc-eEEEEEechhcchhHHHhcCccc
Confidence            74     599999999877666655555333          346899999999988 9999999988776 888999986


Q ss_pred             CCCCeEEEeecCCCccccCCCC----CChhHHHHHHHHHccCCCCCC
Q 015217          334 YGYPALVALNVKKGVYTPLKSA----FELEHIVEFVKEAGRGGKGNL  376 (411)
Q Consensus       334 ~~~P~l~v~~~~~~~~~~~~~~----~~~~~i~~fi~~~~~g~~~~~  376 (411)
                        +|++++.+. .++|. +.+.    .+.+.|.+|+++++.|+....
T Consensus       303 --~P~~~i~~~-~~~y~-~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~  345 (477)
T PTZ00102        303 --FPGLAYQSP-AGRYL-LPPAKESFDSVEALIEFFKDVEAGKVEKS  345 (477)
T ss_pred             --CceEEEEcC-CcccC-CCccccccCCHHHHHHHHHHHhCCCCCcc
Confidence              999888863 44663 4432    789999999999999976654

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=1.8e-30  Score=253.76  Aligned_cols=309  Identities=27%  Similarity=0.470  Sum_probs=243.4

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .+..++.++|+ .+..++++++|.||++||++|+++.|.|.++++.+.+   ++.++.|||++++++|++++|.++|+++
T Consensus         2 ~v~~l~~~~~~-~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~   80 (462)
T TIGR01130         2 DVLVLTKDNFD-DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK   80 (462)
T ss_pred             CceECCHHHHH-HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence            46789999999 5667888999999999999999999999999998864   4999999999999999999999999999


Q ss_pred             EEeCCCC-CcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeC-ccchHHHHhcCCCeEEEEE
Q 015217          108 VFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELN-SSNFDELVLKSKDLWIVEF  185 (411)
Q Consensus       108 ~~~~g~~-~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~lv~f  185 (411)
                      +|.+|+. ..+|.|.++.+.+.+|+.+.+                       .+.+..++ .+++..++ ..+.+.+|.|
T Consensus        81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~-----------------------~~~~~~i~~~~~~~~~~-~~~~~~vi~~  136 (462)
T TIGR01130        81 IFRNGEDSVSDYNGPRDADGIVKYMKKQS-----------------------GPAVKEIETVADLEAFL-ADDDVVVIGF  136 (462)
T ss_pred             EEeCCccceeEecCCCCHHHHHHHHHHhc-----------------------CCCceeecCHHHHHHHH-hcCCcEEEEE
Confidence            9999886 789999999999999998774                       45667776 46666654 4466777777


Q ss_pred             eCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCc--ccccCCC--CHHHHHHH
Q 015217          186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP--IPYEGAR--TAGAIESF  261 (411)
Q Consensus       186 ~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~--~~y~g~~--~~~~i~~f  261 (411)
                      +...-   ......|.++|..+...+.+...  ..+..+.+.++... |.+++|+......  ..|.|..  +.+.|.+|
T Consensus       137 ~~~~~---~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f  210 (462)
T TIGR01130       137 FKDLD---SELNDTFLSVAEKLRDVYFFFAH--SSDVAAFAKLGAFP-DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKF  210 (462)
T ss_pred             ECCCC---cHHHHHHHHHHHHhhhccceEEe--cCCHHHHhhcCCCC-CcEEEecccccccccccccCcccCCHHHHHHH
Confidence            76421   57788999999999887664322  23456778887654 6777775443222  4677765  55899999


Q ss_pred             HHHHhhhcCCCCCceEeCChhHHHHhcCCcc-EEE------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHH
Q 015217          262 ALEQLETNVAPPEVTELTSQDVMEEKCGSAA-ICF------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENR  328 (411)
Q Consensus       262 i~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~-~~~------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~  328 (411)
                      +..+.     .|.+.+++..+.......... +++            +.+.++.+|++|++..+.|+++|+...+.++..
T Consensus       211 i~~~~-----~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~  285 (462)
T TIGR01130       211 IRAES-----LPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEY  285 (462)
T ss_pred             HHHcC-----CCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHH
Confidence            98875     488999988665444443321 111            246899999999973399999999888999999


Q ss_pred             hCCCCCCCCeEEEeecCC-CccccCCC-CCChhHHHHHHHHHccCCCCCC
Q 015217          329 VGVGGYGYPALVALNVKK-GVYTPLKS-AFELEHIVEFVKEAGRGGKGNL  376 (411)
Q Consensus       329 f~~~~~~~P~l~v~~~~~-~~~~~~~~-~~~~~~i~~fi~~~~~g~~~~~  376 (411)
                      ||+....+|.+++++.++ .+| .+.+ .++.++|.+||++++.|+.+..
T Consensus       286 ~~~~~~~~P~~vi~~~~~~~~y-~~~~~~~~~~~i~~fi~~~~~g~~~~~  334 (462)
T TIGR01130       286 FGLKAEKFPAVAIQDLEGNKKY-PMDQEEFSSENLEAFVKDFLDGKLKPY  334 (462)
T ss_pred             cCCCccCCceEEEEeCCccccc-CCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence            999877799999999776 556 4444 7999999999999999988754

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.97  E-value=3.9e-29  Score=212.10  Aligned_cols=294  Identities=22%  Similarity=0.383  Sum_probs=211.2

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      +..+.+|+++-.+   .+.+..|+|.||+|||.||++++|.|.++...+++   .|.++++||++-+.++.++||+|||+
T Consensus        27 pt~VeDLddkFkd---nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT  103 (468)
T KOG4277|consen   27 PTAVEDLDDKFKD---NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT  103 (468)
T ss_pred             chhhhhhhHHhhh---cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence            3456677653222   24577999999999999999999999999998885   48999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHH-HHhcCCCeEEEE
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDE-LVLKSKDLWIVE  184 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~~~~~~lv~  184 (411)
                      +.+|+++ ..+.|.|+++.++|+.|..+.                       +.+.+..+++++... .+...+.+.+|+
T Consensus       104 Ik~~kgd-~a~dYRG~R~Kd~iieFAhR~-----------------------a~aiI~pi~enQ~~fehlq~Rhq~ffVf  159 (468)
T KOG4277|consen  104 IKFFKGD-HAIDYRGGREKDAIIEFAHRC-----------------------AAAIIEPINENQIEFEHLQARHQPFFVF  159 (468)
T ss_pred             EEEecCC-eeeecCCCccHHHHHHHHHhc-----------------------ccceeeecChhHHHHHHHhhccCceEEE
Confidence            9999976 479999999999999999875                       234455555533322 246667899999


Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC-ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF-NVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~-~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      |.+...    .+...|.++|..   ++.+++.-..+ .+++-.+ ..+..|++.+|+++.  ...| ...+.+++.+||.
T Consensus       160 ~Gtge~----PL~d~fidAASe---~~~~a~FfSas-eeVaPe~~~~kempaV~VFKDet--f~i~-de~dd~dLseWin  228 (468)
T KOG4277|consen  160 FGTGEG----PLFDAFIDAASE---KFSVARFFSAS-EEVAPEENDAKEMPAVAVFKDET--FEIE-DEGDDEDLSEWIN  228 (468)
T ss_pred             EeCCCC----cHHHHHHHHhhh---heeeeeeeccc-cccCCcccchhhccceEEEccce--eEEE-ecCchhHHHHHHh
Confidence            986542    356666666654   34444433222 2333333 345679999998764  2222 2346789999997


Q ss_pred             HHhhhcCCCCCceEeCChhHHHHhcCCccEEE-----------------eHHHHHHHHHHhhcC-----ccEEEEecCCC
Q 015217          264 EQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------------YLEMLLSVAEKFKRG-----HYSFVWAAAGK  321 (411)
Q Consensus       264 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~-----~~~f~~i~~~~  321 (411)
                      +.-     .|.+...+.....+...+++.+..                 +.++.+.+|+.+|+.     .|.|+|+|+  
T Consensus       229 RER-----f~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDG--  301 (468)
T KOG4277|consen  229 RER-----FPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDG--  301 (468)
T ss_pred             Hhh-----ccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccch--
Confidence            653     255544444332222222332222                 557889999999875     499999999  


Q ss_pred             chhhHHHhCCCCCCCCeEEEeecCCCccccCCC---CCChhHHHHHHHHH
Q 015217          322 QPDLENRVGVGGYGYPALVALNVKKGVYTPLKS---AFELEHIVEFVKEA  368 (411)
Q Consensus       322 ~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~---~~~~~~i~~fi~~~  368 (411)
                       .++++++.+.....|.++|+|..+..|...+.   -.+.+++.+||+.-
T Consensus       302 -nD~~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFient  350 (468)
T KOG4277|consen  302 -NDLANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENT  350 (468)
T ss_pred             -hHHHHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhcc
Confidence             88888888877779999999988888855432   27889999999983

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5e-29  Score=235.41  Aligned_cols=241  Identities=45%  Similarity=0.863  Sum_probs=203.9

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      ..........++...|.......+++++|+||+|||++|+++.|.|.+++..+++.+.++.|||+.+..+|++|+|+++|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfP  103 (383)
T KOG0191|consen   24 LYLASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFP  103 (383)
T ss_pred             hhccccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCc
Confidence            33444444455556666577788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-CcEEeCccchHHHHhcCCCeEEE
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSN-ESIELNSSNFDELVLKSKDLWIV  183 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~lv  183 (411)
                      ++.+|.+|.....|.|..+.+.+.+|....+......                ... .+..++..++.......+..++|
T Consensus       104 tl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~l~~~~~~~~~~~~~~~~lv  167 (383)
T KOG0191|consen  104 TLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKK----------------LVEGEVFELTKDNFDETVKDSDADWLV  167 (383)
T ss_pred             EEEEEcCCCceeeccCcccHHHHHHHHHHhhcccccc----------------ccCCceEEccccchhhhhhccCcceEE
Confidence            9999999856899999999999999998877544333                233 48999999999988888889999


Q ss_pred             EEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          184 EFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       184 ~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      .||+|||++|+.+.+.|.+++..+.  ..+.++.++|+....++.++++..+|++.+|..+.+....|.|.++.+.+..|
T Consensus       168 ~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~  247 (383)
T KOG0191|consen  168 EFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSF  247 (383)
T ss_pred             EEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHH
Confidence            9999999999999999999999996  46999999999889999999999999999998776535667788999999999


Q ss_pred             HHHHhhhcCCCCCceEeCCh
Q 015217          262 ALEQLETNVAPPEVTELTSQ  281 (411)
Q Consensus       262 i~~~~~~~~~~~~v~~l~~~  281 (411)
                      +..........+.+.+....
T Consensus       248 v~~~~~~~~~~~~~~~~~~~  267 (383)
T KOG0191|consen  248 VEKKERRNIPEPELKEIEDK  267 (383)
T ss_pred             HHhhcCCCCCCcccccccCc
Confidence            99887654333444444443

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.96  E-value=4.5e-26  Score=198.23  Aligned_cols=313  Identities=21%  Similarity=0.341  Sum_probs=221.8

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhh-----H-HHHHHHHHhCC-CeEEEEEeccccHhHHHh
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALT-----P-IWEKAATVLKG-VATVAALDANEHQSLAQE   97 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~-----~-~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~   97 (411)
                      .+.+..++++|+.+||+ .++++....+|+||.|--..-....     . .++-+|+.+.. .|.||.||..++..++++
T Consensus        29 ~YDGkDRVi~LneKNfk-~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKK  107 (383)
T PF01216_consen   29 EYDGKDRVIDLNEKNFK-RALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKK  107 (383)
T ss_dssp             S-SSS--CEEE-TTTHH-HHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHH
T ss_pred             cCCCccceEEcchhHHH-HHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHh
Confidence            56788999999999999 6888899999999998743322211     1 44556666654 699999999999999999


Q ss_pred             cCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhc-
Q 015217           98 YGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-  176 (411)
Q Consensus        98 ~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-  176 (411)
                      +|+...+++.+|.+|. ++.|.|.++++.++.|+...+                       ..+|..++.+.-.+.+.+ 
T Consensus       108 Lgv~E~~SiyVfkd~~-~IEydG~~saDtLVeFl~dl~-----------------------edPVeiIn~~~e~~~Fe~i  163 (383)
T PF01216_consen  108 LGVEEEGSIYVFKDGE-VIEYDGERSADTLVEFLLDLL-----------------------EDPVEIINNKHELKAFERI  163 (383)
T ss_dssp             HT--STTEEEEEETTE-EEEE-S--SHHHHHHHHHHHH-----------------------SSSEEEE-SHHHHHHHHH-
T ss_pred             cCccccCcEEEEECCc-EEEecCccCHHHHHHHHHHhc-----------------------ccchhhhcChhhhhhhhhc
Confidence            9999999999999986 699999999999999999987                       466888887655544434 


Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCH
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTA  255 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~  255 (411)
                      ...+.+|.|+.+.-   ......|.++|..|++.+.|+.+-   ++.+++++++. .-.+-+|++-.+.++...|. .+.
T Consensus       164 ed~~klIGyFk~~~---s~~yk~FeeAAe~F~p~IkFfAtf---d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e  236 (383)
T PF01216_consen  164 EDDIKLIGYFKSED---SEHYKEFEEAAEHFQPYIKFFATF---DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE  236 (383)
T ss_dssp             -SS-EEEEE-SSTT---SHHHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred             ccceeEEEEeCCCC---cHHHHHHHHHHHhhcCceeEEEEe---cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence            34688888887642   347889999999999999999854   89999999997 78899998877778888874 678


Q ss_pred             HHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC----CccEEE----------eHHHHHHHHHHhhcC-ccEEEEecCC
Q 015217          256 GAIESFALEQLETNVAPPEVTELTSQDVMEEKCG----SAAICF----------YLEMLLSVAEKFKRG-HYSFVWAAAG  320 (411)
Q Consensus       256 ~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~----~~~~~~----------~~~~~~~~a~~~~~~-~~~f~~i~~~  320 (411)
                      +++++||.+|-     .|.+++++.+++++.-..    .+.+.|          ++++++++|..+.+. .+.++|||++
T Consensus       237 ~e~~~fi~~h~-----rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD  311 (383)
T PF01216_consen  237 EELVEFIEEHK-----RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPD  311 (383)
T ss_dssp             HHHHHHHHHT------S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GG
T ss_pred             HHHHHHHHHhc-----hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCC
Confidence            89999999985     499999999998775322    233444          779999999999987 4999999998


Q ss_pred             Cch----hhHHHhCCCCCCCCeEEEeecCCCc--cccCCC---CCChhHHHHHHHHHccCCCCC
Q 015217          321 KQP----DLENRVGVGGYGYPALVALNVKKGV--YTPLKS---AFELEHIVEFVKEAGRGGKGN  375 (411)
Q Consensus       321 ~~~----~~~~~f~~~~~~~P~l~v~~~~~~~--~~~~~~---~~~~~~i~~fi~~~~~g~~~~  375 (411)
                      +.|    -|.+.||++- .-|.+.+++.+...  |...++   .-|.+.++.||+++++|++.+
T Consensus       312 ~fPllv~yWE~tF~Idl-~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~  374 (383)
T PF01216_consen  312 DFPLLVPYWEKTFGIDL-SRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT  374 (383)
T ss_dssp             G-HHHHHHHHHHHTT-T-TS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred             CCchhHHHHHhhcCccc-cCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence            876    4788999986 46999999977643  433322   258999999999999996654

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.94  E-value=2.7e-25  Score=192.93  Aligned_cols=191  Identities=20%  Similarity=0.291  Sum_probs=153.3

Q ss_pred             CCCeEEEEEEC---CCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC-cccCCC
Q 015217           47 ANGVVLVEFYA---PWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP-VDYQGA  121 (411)
Q Consensus        47 ~~~~~~v~f~~---~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~-~~~~g~  121 (411)
                      ++...++.|++   +||++|+.+.|.++++++.+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|.
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~   97 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI   97 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence            45566777888   9999999999999999998854 356777777799999999999999999999999875 589999


Q ss_pred             CCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCC-CeEEEEEeCCCChhhhhhhHHH
Q 015217          122 RDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEW  200 (411)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~  200 (411)
                      .+.+.+.+|+...+..                     ......++...... +.... ...++.|+++||++|+.+.+.+
T Consensus        98 ~~~~~l~~~i~~~~~~---------------------~~~~~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l  155 (215)
T TIGR02187        98 PAGYEFAALIEDIVRV---------------------SQGEPGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMA  155 (215)
T ss_pred             CCHHHHHHHHHHHHHh---------------------cCCCCCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHH
Confidence            9999999998866421                     01123444433433 33333 4566669999999999999999


Q ss_pred             HHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          201 KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       201 ~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      .+++... +.+.+..+|.+.+++++++|+|.++|++++++++.    .+.|....+++.+|+.+
T Consensus       156 ~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       156 HKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence            9999884 57999999999999999999999999999986543    28898888999999865

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.93  E-value=1.8e-23  Score=178.24  Aligned_cols=298  Identities=23%  Similarity=0.349  Sum_probs=215.5

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-----CCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-----GVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      +.+|++ .++..+..++|.|||+||+..+.++|.+++++..++     +++.++.|||+++..++.+|.|..|||+.+|.
T Consensus         2 t~~N~~-~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    2 TSENID-SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccccHH-HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            456777 777889999999999999999999999999888774     57999999999999999999999999999999


Q ss_pred             CCCC-CcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCcc-chHHHHhcCCCeEEEEEeCC
Q 015217          111 PGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSS-NFDELVLKSKDLWIVEFFAP  188 (411)
Q Consensus       111 ~g~~-~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~~~~~~~lv~f~~~  188 (411)
                      +|.. ...|.|.++.+++.+|+.+.+...                       +.+..+. ++......+...++.+|-..
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~-----------------------i~Ef~sl~~l~n~~~p~K~~vIgyF~~k  137 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLSDP-----------------------INEFESLDQLQNLDIPSKRTVIGYFPSK  137 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhccH-----------------------HHHHHhHHHHHhhhccccceEEEEeccC
Confidence            9976 448999999999999999987433                       3333332 33332222445666666544


Q ss_pred             CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-CcccccCCC-CHHHHHHHHHHHh
Q 015217          189 WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGAR-TAGAIESFALEQL  266 (411)
Q Consensus       189 ~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~-~~~~i~~fi~~~~  266 (411)
                      .    ..-...+.++|..+++.+.|..--.+    +.....-.+.+ +++|+++.. ....|.|.+ +.+.+..||.+..
T Consensus       138 d----spey~~~~kva~~lr~dc~f~V~~gD----~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKc  208 (375)
T KOG0912|consen  138 D----SPEYDNLRKVASLLRDDCVFLVGFGD----LLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKC  208 (375)
T ss_pred             C----CchHHHHHHHHHHHhhccEEEeeccc----cccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcc
Confidence            3    23567888999999987666431111    11111112223 455555432 234699986 6789999998876


Q ss_pred             hhcCCCCCceEeCChhHHHHhcCCccEEEeH---------HHHH-HHHHHhhcC--ccEEEEecCCCchhhHHHhCCCCC
Q 015217          267 ETNVAPPEVTELTSQDVMEEKCGSAAICFYL---------EMLL-SVAEKFKRG--HYSFVWAAAGKQPDLENRVGVGGY  334 (411)
Q Consensus       267 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~---------~~~~-~~a~~~~~~--~~~f~~i~~~~~~~~~~~f~~~~~  334 (411)
                      .     |.|.++|.++.-+--..+.++++++         +.|. .++++.-+.  .++|+..|+.....-+.-+|-+..
T Consensus       209 v-----pLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~  283 (375)
T KOG0912|consen  209 V-----PLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPD  283 (375)
T ss_pred             h-----hhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcc
Confidence            4     9999999977666555666655421         3333 344455443  389999999888888999998888


Q ss_pred             CCCeEEEeecCCCccccCC---CCCChhHHHHHHHHHccCCC
Q 015217          335 GYPALVALNVKKGVYTPLK---SAFELEHIVEFVKEAGRGGK  373 (411)
Q Consensus       335 ~~P~l~v~~~~~~~~~~~~---~~~~~~~i~~fi~~~~~g~~  373 (411)
                      ++|.|+|=. -+..| .+.   .-..+..|.+|+.++-+|+.
T Consensus       284 DLPviaIDs-F~Hmy-lfp~f~di~~pGkLkqFv~DL~sgkl  323 (375)
T KOG0912|consen  284 DLPVIAIDS-FRHMY-LFPDFNDINIPGKLKQFVADLHSGKL  323 (375)
T ss_pred             cCcEEEeec-cceee-ecCchhhhcCccHHHHHHHHHhCchh
Confidence            999988753 33444 232   33677899999999999987

>PTZ00102 disulphide isomerase; Provisional

Probab=99.90  E-value=7.2e-22  Score=193.59  Aligned_cols=225  Identities=22%  Similarity=0.412  Sum_probs=179.7

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh-HHHhcCCCcccEEEEEe
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS-LAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~P~~~~~~  110 (411)
                      +..++.+++. ....++.++++.++  .+.....+.+.+.++++.+++++.|+.+|+++.+. +++.+|+.++|++++..
T Consensus       234 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~  310 (477)
T PTZ00102        234 FAEINAENYR-RYISSGKDLVWFCG--TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQS  310 (477)
T ss_pred             eeecCccchH-HHhcCCccEEEEec--CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEEc
Confidence            3466777776 45555555443333  56677788999999999999999999999998886 89999999999988776


Q ss_pred             CCCCCcccCCC----CCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCCcEEeCccchHHHHhcCCCeEEEE
Q 015217          111 PGKPPVDYQGA----RDVKPIAEFALQQIKALLKERLSGKATGGSSDK--SKSDSNESIELNSSNFDELVLKSKDLWIVE  184 (411)
Q Consensus       111 ~g~~~~~~~g~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~  184 (411)
                      .+.. ..+.+.    .+.+.|.+|+.+.+        +++.....++.  +......+..++..+|.+.+.+.+++++|.
T Consensus       311 ~~~~-y~~~~~~~~~~~~~~l~~Fv~~~~--------~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~  381 (477)
T PTZ00102        311 PAGR-YLLPPAKESFDSVEALIEFFKDVE--------AGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLE  381 (477)
T ss_pred             CCcc-cCCCccccccCCHHHHHHHHHHHh--------CCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEE
Confidence            4322 233333    56667777776654        44444444333  234467799999999999878888999999


Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          185 FFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       185 f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      ||++||++|+.+.|.|.++++.+++  .+.++.+|++.+...++.++++++|++++|++++..+..|.|..+.+.+.+|+
T Consensus       382 f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i  461 (477)
T PTZ00102        382 IYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFV  461 (477)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHH
Confidence            9999999999999999999999875  59999999999999999999999999999998876667899999999999999


Q ss_pred             HHHhhh
Q 015217          263 LEQLET  268 (411)
Q Consensus       263 ~~~~~~  268 (411)
                      .++...
T Consensus       462 ~~~~~~  467 (477)
T PTZ00102        462 NKHATN  467 (477)
T ss_pred             HHcCCC
Confidence            998753

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.88  E-value=3.1e-22  Score=153.45  Aligned_cols=107  Identities=22%  Similarity=0.415  Sum_probs=97.8

Q ss_pred             ccCCCCCcEEeCccchhHH--HhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHH-HhcCCC
Q 015217           25 LYGSSSPVVQLTPNNFKSK--VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA-QEYGIR  101 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~--~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~-~~~~i~  101 (411)
                      .+++...+++|++++|++.  +..++++++|.|||+||++|+.+.|.++++++.+++.+.|++|||+++..+| ++|+|.
T Consensus         4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~   83 (113)
T cd03006           4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF   83 (113)
T ss_pred             ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence            4566788999999999954  2578999999999999999999999999999999988999999999999999 589999


Q ss_pred             cccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217          102 GFPTIKVFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       102 ~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                      ++||+++|++|+...+|.|.++.+.|..|+
T Consensus        84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             ccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence            999999999998889999999999998773

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.7e-21  Score=178.09  Aligned_cols=210  Identities=29%  Similarity=0.539  Sum_probs=178.7

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCcccccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ....|..|+..+|.+. +..+..++|.||+|||++|+.+.|.|.++|..+..   .+..+.|||+.+..+|.+|+|+++|
T Consensus        23 ~~~~Vl~Lt~dnf~~~-i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKET-INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             cccceEEEecccHHHH-hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            4678999999999996 67788999999999999999999999999999987   4999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE---------eHHHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF---------YLEMLLSVAE  305 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~a~  305 (411)
                      |+.+|++|.. +..|+|+++.+.|+.|+.+..+     |....+.+.+..+.+.....+.+         ..+.+...|.
T Consensus       102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~g-----Pa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~  175 (493)
T KOG0190|consen  102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSG-----PASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAAS  175 (493)
T ss_pred             eEEEEecCCc-ceeccCcccHHHHHHHHHhccC-----CCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHH
Confidence            9999998875 7999999999999999999876     88999999888888777755333         2257778888


Q ss_pred             HhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHccCCCCCCCC
Q 015217          306 KFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPL  378 (411)
Q Consensus       306 ~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~~~  378 (411)
                      ..++. +.|+..+.   .++++.+++.....|.+++++........|+++++.+.|.+||....-+-....+.
T Consensus       176 ~l~~d-~~F~~ts~---~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~  244 (493)
T KOG0190|consen  176 KLRDD-YKFAHTSD---SDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTV  244 (493)
T ss_pred             hcccc-ceeeccCc---HhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecc
Confidence            88888 99985554   88999999874446678888877788888899999999999999876554444333

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.86  E-value=6.5e-20  Score=179.31  Aligned_cols=224  Identities=26%  Similarity=0.476  Sum_probs=177.1

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCC--cccEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFY--APWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIR--GFPTI  106 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~--~~P~~  106 (411)
                      +..++..++. .....+ +.++.|+  ......|+.+...+.++++.+++ .+.|+.+|+...+.+++.+|+.  .+|++
T Consensus       219 v~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~  296 (462)
T TIGR01130       219 VGEFTQETAA-KYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAV  296 (462)
T ss_pred             eEeeCCcchh-hHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceE
Confidence            3455666665 343443 4444443  44566789999999999999997 8999999999999999999998  69999


Q ss_pred             EEEeCCC-CCcccCC-CCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCcEEeCccchHHHHhcCCCeEE
Q 015217          107 KVFVPGK-PPVDYQG-ARDVKPIAEFALQQIKALLKERLSGKATGGSSDKS--KSDSNESIELNSSNFDELVLKSKDLWI  182 (411)
Q Consensus       107 ~~~~~g~-~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~~~~l  182 (411)
                      +++.... ....+.+ ..+.+.|.+|+.+.+        +|+......+.+  ......+..+...+|.+.+.+.++.++
T Consensus       297 vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~--------~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vl  368 (462)
T TIGR01130       297 AIQDLEGNKKYPMDQEEFSSENLEAFVKDFL--------DGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVL  368 (462)
T ss_pred             EEEeCCcccccCCCcCCCCHHHHHHHHHHHh--------cCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEE
Confidence            9987543 2344544 667777777777654        555555444443  224567899999999998878888999


Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-CcccccCCCCHHHH
Q 015217          183 VEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAI  258 (411)
Q Consensus       183 v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~~~~~i  258 (411)
                      |.||++||++|+.+.|.|.++++.+++   .+.|+.+||+.+. +.. +++.++|++++|+.+.. .+..|.|..+.++|
T Consensus       369 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l  446 (462)
T TIGR01130       369 VEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDF  446 (462)
T ss_pred             EEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHH
Confidence            999999999999999999999999998   6999999998765 333 99999999999987765 46889999999999


Q ss_pred             HHHHHHHhh
Q 015217          259 ESFALEQLE  267 (411)
Q Consensus       259 ~~fi~~~~~  267 (411)
                      .+|+.++..
T Consensus       447 ~~~l~~~~~  455 (462)
T TIGR01130       447 SKFIAKHAT  455 (462)
T ss_pred             HHHHHhcCC
Confidence            999988763

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.86  E-value=7e-21  Score=163.27  Aligned_cols=136  Identities=32%  Similarity=0.543  Sum_probs=106.7

Q ss_pred             CchhhHHHHHHHHHHHhhhcccccccCCCCCcEEeCccchhHHHhc----CCCeEEEEEECCCChhhhhhhHHHHHHHHH
Q 015217            1 MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLN----ANGVVLVEFYAPWCGHCQALTPIWEKAATV   76 (411)
Q Consensus         1 Mk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~   76 (411)
                      ||++.+++++++.+++.......-.......+.++++++|++.+..    .+++|+|+||++||++|+.+.|.|+++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~   80 (224)
T PTZ00443          1 MKFIILACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKA   80 (224)
T ss_pred             CchhHHHHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHH
Confidence            7884444433333332222211111122567999999999965543    257999999999999999999999999999


Q ss_pred             hCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           77 LKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        77 ~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +++.+.++.+||++++++|++|+|.++|++++|++|+....+.|.++.+.+.+|+.+...
T Consensus        81 ~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443         81 LKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             cCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998766566788999999999988764

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.85  E-value=6.5e-21  Score=145.29  Aligned_cols=99  Identities=29%  Similarity=0.726  Sum_probs=91.7

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .+.+++.++|++ ....+++++|.||++||++|+.+.|.++++++.+++.+.|+.|||++++.+|++++|.++|++++|+
T Consensus         2 ~~~~l~~~~f~~-~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   80 (101)
T cd03003           2 EIVTLDRGDFDA-AVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP   80 (101)
T ss_pred             CeEEcCHhhHHH-HhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence            467899999995 5567799999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcchhHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEF  130 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~  130 (411)
                      +|+...+|.|.++.+.|.+|
T Consensus        81 ~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          81 SGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCCCcccCCCCCCHHHHHhh
Confidence            99888899999999988876

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.84  E-value=1.3e-20  Score=144.47  Aligned_cols=101  Identities=43%  Similarity=0.736  Sum_probs=92.7

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .+++++.++|++.+..++++++|.||++||++|+.+.|.|+++++.+.+.+.++.+||++++++|++++|.++|++++|.
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   81 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP   81 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence            46789999999777777889999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CC-CCCcccCCCCC-cchhHHHH
Q 015217          111 PG-KPPVDYQGARD-VKPIAEFA  131 (411)
Q Consensus       111 ~g-~~~~~~~g~~~-~~~l~~~~  131 (411)
                      +| +.+.+|.|..+ .++|.+|+
T Consensus        82 ~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          82 GNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCCCceEccCCCCCHHHHHhhC
Confidence            88 77889999987 88888774

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=9.9e-21  Score=147.19  Aligned_cols=105  Identities=30%  Similarity=0.545  Sum_probs=99.6

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .+...+..+|++++++++.||+|.|||+||++|+.+.|.+++++..+.|.+.+++||.|++.+++.+|+|..+|++++|+
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk  123 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK  123 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+...++.|..+.+.+.+++.+.+
T Consensus       124 nGe~~d~~vG~~~~~~l~~~i~k~l  148 (150)
T KOG0910|consen  124 NGEKVDRFVGAVPKEQLRSLIKKFL  148 (150)
T ss_pred             CCEEeeeecccCCHHHHHHHHHHHh
Confidence            9998889999999999999998876

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.83  E-value=4.3e-20  Score=141.58  Aligned_cols=103  Identities=37%  Similarity=0.696  Sum_probs=96.4

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      |..+++++|++.+..++++++|+||++||++|+.+.|.|.++++.+.+++.|+.|||++++.+|++|+|.++|++++|.+
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN   80 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence            46899999996665568999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+...+|.|..+.+.|.+|++++
T Consensus        81 g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   81 GKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHHHHcC
Confidence            98888999999999999999864

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.82  E-value=7.9e-20  Score=140.96  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=98.8

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChh--hh--hhhHHHHHHHHHh--CCCeEEEEEeccccHhHHHhc
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH--CQ--ALTPIWEKAATVL--KGVATVAALDANEHQSLAQEY   98 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~--C~--~~~~~~~~~~~~~--~~~i~~~~vd~~~~~~~~~~~   98 (411)
                      .++....+..+++++|++.+.+.+.++|++||+.||++  |+  .+.|.+.+++..+  .+++.+++||+++++++|++|
T Consensus         4 ~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~   83 (120)
T cd03065           4 EYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL   83 (120)
T ss_pred             ccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc
Confidence            35667789999999999887888889999999999976  99  8888898888888  778999999999999999999


Q ss_pred             CCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           99 GIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        99 ~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ||.++||+++|++|+.+ .|.|.++.+.+.+|+.+.+
T Consensus        84 ~I~~iPTl~lfk~G~~v-~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          84 GLDEEDSIYVFKDDEVI-EYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             CCccccEEEEEECCEEE-EeeCCCCHHHHHHHHHHHh
Confidence            99999999999999865 4999999999999998754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.82  E-value=1.1e-19  Score=140.37  Aligned_cols=100  Identities=38%  Similarity=0.731  Sum_probs=90.1

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC------CCeEEEEEeccccHhHHHhcCCCccc
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~------~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      .+.++++++|+ .+...+++++|.||++||++|+++.|.|+++++.++      +.+.++.+||++++++|++|+|+++|
T Consensus         2 ~v~~l~~~~f~-~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNID-DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHH-HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            47789999999 566888999999999999999999999999998763      25899999999999999999999999


Q ss_pred             EEEEEeCCCC-CcccCCCCCcchhHHHH
Q 015217          105 TIKVFVPGKP-PVDYQGARDVKPIAEFA  131 (411)
Q Consensus       105 ~~~~~~~g~~-~~~~~g~~~~~~l~~~~  131 (411)
                      ++++|++|+. ..+|.|.++.+.|.+|+
T Consensus        81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999999984 68999999999998874

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.81  E-value=2.4e-19  Score=137.48  Aligned_cols=103  Identities=19%  Similarity=0.407  Sum_probs=93.9

Q ss_pred             CCCCcEEeCccchHHH--HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH-hhCcccccc
Q 015217          158 DSNESIELNSSNFDEL--VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM-SKFNVQGFP  234 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~--~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~-~~~~v~~~P  234 (411)
                      ..+.+.++++.+|.+.  +.+.+++++|.||++||++|+.+.|.|.++|+.+++.+.|+.|||+.+..+| ++|+|.++|
T Consensus         7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~P   86 (113)
T cd03006           7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFP   86 (113)
T ss_pred             CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccC
Confidence            4577999999999986  3577889999999999999999999999999999988999999999999999 589999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      |+++|+++. .+..|.|..+.+.|..|
T Consensus        87 Tl~lf~~g~-~~~~y~G~~~~~~i~~~  112 (113)
T cd03006          87 VIHLYYRSR-GPIEYKGPMRAPYMEKF  112 (113)
T ss_pred             EEEEEECCc-cceEEeCCCCHHHHHhh
Confidence            999998765 47899999999999887

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.80  E-value=4.3e-19  Score=137.42  Aligned_cols=100  Identities=52%  Similarity=0.958  Sum_probs=92.0

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCCcccEEEEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~  109 (411)
                      +.++++++|++.+...+++++|.||++||++|+++.|.+.++++.+.+.+.++.+||+.  ++.+|++|+|.++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence            67899999997777778889999999999999999999999999998889999999998  8899999999999999999


Q ss_pred             eCCC-----CCcccCCCCCcchhHHHH
Q 015217          110 VPGK-----PPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       110 ~~g~-----~~~~~~g~~~~~~l~~~~  131 (411)
                      .+|+     ....|.|.++.+.|.+|+
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             eCCCcccccccccccCccCHHHHHHHh
Confidence            9885     367899999999999887

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=7.1e-19  Score=134.88  Aligned_cols=102  Identities=43%  Similarity=0.840  Sum_probs=94.1

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      .+..++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+.++.+|++++|.++|++++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   81 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP   81 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence            47789999999988777789999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCC-HHHHHHHH
Q 015217          241 ADKDSPIPYEGART-AGAIESFA  262 (411)
Q Consensus       241 ~~~~~~~~y~g~~~-~~~i~~fi  262 (411)
                      ++++...+|.|..+ .++|.+|+
T Consensus        82 ~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          82 GNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCCCceEccCCCCCHHHHHhhC
Confidence            87566899999887 99988874

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.79  E-value=6.4e-19  Score=136.31  Aligned_cols=107  Identities=36%  Similarity=0.707  Sum_probs=98.6

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ++.+.++++++|.+.+...+++++|+||++||++|+.+.|.++++++.+.+++.++.+||+..+.++++|++.++|++++
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   81 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence            46788999999997777788999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+|+...++.|..+.+.+..++.+.+
T Consensus        82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         82 FKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            999987788999999998988887664

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.78  E-value=1.6e-18  Score=132.79  Aligned_cols=100  Identities=63%  Similarity=1.095  Sum_probs=91.7

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.++++++|.+.+...+++++|.||++||++|+.+.|.|.++++.+.+.+.++.+||++++++|++++|+++|++++|.+
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~   81 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA   81 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence            56889999996666777789999999999999999999999999998899999999999999999999999999999998


Q ss_pred             C-CCCcccCCCCCcchhHHHH
Q 015217          112 G-KPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       112 g-~~~~~~~g~~~~~~l~~~~  131 (411)
                      | .....|.|..+.+.|.+|+
T Consensus        82 ~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          82 GKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCcceeecCCCCCHHHHHHHh
Confidence            8 4478999999999999886

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.1e-18  Score=150.69  Aligned_cols=110  Identities=32%  Similarity=0.647  Sum_probs=101.5

Q ss_pred             CCCCcEEeCccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           28 SSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ....+.++|+.||.+.++.+  ..||+|+||+|||++|+.+.|.+++++..++|++.+++||||+++.++.+|||+.+|+
T Consensus        21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence            33448999999999887653  3499999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                      ++.|.+|+.+-.|.|....+.+.+|+.+.+..
T Consensus       101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            99999999999999999999999999988743

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.78  E-value=3.4e-18  Score=130.26  Aligned_cols=99  Identities=32%  Similarity=0.820  Sum_probs=90.8

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      .+..++..+|.+.+ ...++++|.||++||++|+.+.+.|.++|+.+++.+.|+.|||+.++.+|++++|.++|++++|+
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   80 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP   80 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence            47889999999875 55689999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcccccCCCCHHHHHHH
Q 015217          241 ADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      +|. ....|.|..+.+.|.+|
T Consensus        81 ~g~-~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          81 SGM-NPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCC-CcccCCCCCCHHHHHhh
Confidence            765 47889999999998887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.78  E-value=1.5e-18  Score=132.24  Aligned_cols=98  Identities=36%  Similarity=0.602  Sum_probs=87.5

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      .+.+++.++|++ ++. +. ++|.||++||++|+.+.|.|+++++.+++ ++.++.+||++++.+|++|+|.++|+++++
T Consensus         2 ~v~~l~~~~f~~-~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02994           2 NVVELTDSNWTL-VLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA   78 (101)
T ss_pred             ceEEcChhhHHH-HhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence            477899999994 443 33 89999999999999999999999998765 699999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      .+|+ +.+|.|.++.+.|..|+.
T Consensus        79 ~~g~-~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          79 KDGV-FRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             CCCC-EEEecCCCCHHHHHHHHh
Confidence            8886 588999999999998875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.78  E-value=9.4e-19  Score=135.26  Aligned_cols=101  Identities=18%  Similarity=0.420  Sum_probs=90.1

Q ss_pred             EEeCccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           33 VQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        33 ~~l~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..++.++|.+.+..  .+++++|.||++||++|+.+.|.++++++.+++ ++.++.|||+.++.++++++|.++|++++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            35677888866653  678999999999999999999999999999986 599999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      ++|+...++.|..+.+.+.+|+.+
T Consensus        87 ~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 INGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECCEEEEEecCCCCHHHHHHHHhc
Confidence            999877788999999999888864

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.77  E-value=4.3e-18  Score=130.41  Aligned_cols=103  Identities=36%  Similarity=0.687  Sum_probs=96.2

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      |..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+.+.|+.||++.++.++++|+|.++|++++|++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN   80 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence            56899999999877768999999999999999999999999999999899999999999999999999999999999998


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |.. ..+|.|..+.++|.+||.+|
T Consensus        81 g~~-~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   81 GKE-VKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TEE-EEEEESSSSHHHHHHHHHHH
T ss_pred             CcE-EEEEECCCCHHHHHHHHHcC
Confidence            775 55999999999999999876

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.77  E-value=1.9e-18  Score=139.36  Aligned_cols=98  Identities=19%  Similarity=0.423  Sum_probs=86.2

Q ss_pred             ccccCCCCCcEEeCccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCC
Q 015217           23 DALYGSSSPVVQLTPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGI  100 (411)
Q Consensus        23 ~~~~~~~~~~~~l~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i  100 (411)
                      +..+.....+.++++++|++.+. ..+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.||++++++++++|+|
T Consensus        21 ~~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V  100 (152)
T cd02962          21 QPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV  100 (152)
T ss_pred             CCccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence            34556678889999999996553 3457999999999999999999999999999875 599999999999999999999


Q ss_pred             Cc------ccEEEEEeCCCCCcccCC
Q 015217          101 RG------FPTIKVFVPGKPPVDYQG  120 (411)
Q Consensus       101 ~~------~P~~~~~~~g~~~~~~~g  120 (411)
                      ..      +||+++|++|+.+.++.|
T Consensus       101 ~~~~~v~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         101 STSPLSKQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             eecCCcCCCCEEEEEECCEEEEEEec
Confidence            88      999999999988777776

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.77  E-value=1.8e-18  Score=132.19  Aligned_cols=98  Identities=37%  Similarity=0.863  Sum_probs=88.0

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ++++++++|+..+ ..+ +++|.||++||++|+.+.|.+.++++.+++   .+.++.+||+++..+|++|+|.++|++++
T Consensus         2 ~~~l~~~~f~~~~-~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHI-AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHh-hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            5688999999554 434 599999999999999999999999999986   69999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                      |++|+...+|.|..+.+.|.+|+
T Consensus        80 ~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCCeeeEeeCCCCHHHHHhhC
Confidence            99998788999999988887764

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.77  E-value=2.7e-18  Score=129.55  Aligned_cols=93  Identities=26%  Similarity=0.549  Sum_probs=84.6

Q ss_pred             chhHHHhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcc
Q 015217           39 NFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVD  117 (411)
Q Consensus        39 ~f~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~  117 (411)
                      +|++.+... +++++|+||++||++|+.+.|.+++++..+.+.+.++.+||++++.++++|+|.++|++++|.+|+...+
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~   81 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG   81 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence            566555444 7899999999999999999999999999998889999999999999999999999999999998887788


Q ss_pred             cCCCCCcchhHHHH
Q 015217          118 YQGARDVKPIAEFA  131 (411)
Q Consensus       118 ~~g~~~~~~l~~~~  131 (411)
                      +.|..+.+.|.+|+
T Consensus        82 ~~g~~~~~~l~~~l   95 (96)
T cd02956          82 FQGAQPEEQLRQML   95 (96)
T ss_pred             ecCCCCHHHHHHHh
Confidence            99999999888876

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.76  E-value=3.9e-18  Score=129.69  Aligned_cols=99  Identities=26%  Similarity=0.378  Sum_probs=86.7

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhCCCeEEEEEec-----cccHhHHHhcCC
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYA--PWCG---HCQALTPIWEKAATVLKGVATVAALDA-----NEHQSLAQEYGI  100 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~--~~C~---~C~~~~~~~~~~~~~~~~~i~~~~vd~-----~~~~~~~~~~~i  100 (411)
                      .+++|++.+|+ .++.+++.+||.||+  |||+   +|+++.|++.+.+.    .|.++.|||     .++.+||++|+|
T Consensus         2 g~v~L~~~nF~-~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           2 GCVDLDTVTFY-KVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             CeeECChhhHH-HHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence            46789999999 677889999999999  9999   88888888877664    389999999     467889999999


Q ss_pred             C--cccEEEEEeCCC--CCcccCCC-CCcchhHHHHHHH
Q 015217          101 R--GFPTIKVFVPGK--PPVDYQGA-RDVKPIAEFALQQ  134 (411)
Q Consensus       101 ~--~~P~~~~~~~g~--~~~~~~g~-~~~~~l~~~~~~~  134 (411)
                      +  ++||+.+|.+|.  ....|.|. ++.+.|++|+.++
T Consensus        77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9  999999999885  46899997 9999999999753

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.76  E-value=3.5e-18  Score=129.48  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=80.3

Q ss_pred             cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCc
Q 015217           38 NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPV  116 (411)
Q Consensus        38 ~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~  116 (411)
                      ++|++.+.. .+++++|.|||+||++|+.+.|.+++++..+++.+.|++||++++++++++|+|.++||+++|++|+.+.
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence            456644443 6789999999999999999999999999999988899999999999999999999999999999999888


Q ss_pred             ccCCCCCcchhH
Q 015217          117 DYQGARDVKPIA  128 (411)
Q Consensus       117 ~~~g~~~~~~l~  128 (411)
                      +..|..+.+.+.
T Consensus        83 ~~~G~~~~~~~~   94 (114)
T cd02954          83 IDLGTGNNNKIN   94 (114)
T ss_pred             EEcCCCCCceEE
Confidence            888877666554

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.75  E-value=1.1e-17  Score=129.13  Aligned_cols=101  Identities=33%  Similarity=0.683  Sum_probs=90.7

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC------CeEEEEEeCCCchhHHhhCcccccc
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG------KVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~------~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      .+..++.++|.+.+ +.+++++|.||++||++|+.+.|.|.++++.+++      .+.|+.|||+.+..++++|+|.++|
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            47889999999864 6778999999999999999999999999988642      4899999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      ++++|++|......|.|..+.++|.+||
T Consensus        81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999988775568999999999999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.75  E-value=8.6e-18  Score=129.64  Aligned_cols=101  Identities=34%  Similarity=0.630  Sum_probs=87.5

Q ss_pred             CcEEeCccchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-cHhHHHh-cCCCcccE
Q 015217           31 PVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-HQSLAQE-YGIRGFPT  105 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-~~~~~~~-~~i~~~P~  105 (411)
                      .+.+++.++|+..+.  .++++++|.||++||++|+++.|.|.++++.+++ .+.++.|||+. +..+|.+ +++.++|+
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            467899999996553  3578999999999999999999999999999987 49999999997 6788875 99999999


Q ss_pred             EEEEeCCC-CCcccCCC-CCcchhHHHH
Q 015217          106 IKVFVPGK-PPVDYQGA-RDVKPIAEFA  131 (411)
Q Consensus       106 ~~~~~~g~-~~~~~~g~-~~~~~l~~~~  131 (411)
                      +++|++|. ....|.|. ++.++|+.|+
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            99998764 47889995 8999998874

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.75  E-value=7.4e-18  Score=128.83  Aligned_cols=99  Identities=52%  Similarity=0.957  Sum_probs=89.8

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccccHhHHHhcCCCcccEEEEEeCC
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKVFVPG  112 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  112 (411)
                      |++++|+ .+..++++++|+||++||++|+.+.+.|++++..+++  ++.++.+||++++.+|++|+|.++|++++|.+|
T Consensus         1 l~~~~~~-~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFD-DIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHH-HHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            4677888 4556899999999999999999999999999999987  699999999999999999999999999999988


Q ss_pred             CCCcccCCCCCcchhHHHHHHH
Q 015217          113 KPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +.+.+|.|..+.+.|..|+.++
T Consensus        80 ~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        80 KKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             CcceeecCCCCHHHHHHHHHhc
Confidence            7678999999999999998754

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.75  E-value=1.9e-17  Score=128.12  Aligned_cols=101  Identities=49%  Similarity=0.880  Sum_probs=93.2

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccccccEEEEE
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+.  +..++++|+|.++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence            67899999999887778889999999999999999999999999999889999999998  8899999999999999999


Q ss_pred             cCCC----CCcccccCCCCHHHHHHHH
Q 015217          240 GADK----DSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       240 ~~~~----~~~~~y~g~~~~~~i~~fi  262 (411)
                      .+++    .....|.|..+.++|.+||
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             eCCCcccccccccccCccCHHHHHHHh
Confidence            8775    3578899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.74  E-value=6e-18  Score=127.88  Aligned_cols=84  Identities=31%  Similarity=0.626  Sum_probs=77.9

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      .++++++|.||++||++|+.+.|.|+++++.+++ +.++.||++ +.+.++++|+|.++||+++|++| ...+|.|.++.
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~   93 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL   93 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence            4789999999999999999999999999999875 788999999 88999999999999999999988 78899999999


Q ss_pred             chhHHHH
Q 015217          125 KPIAEFA  131 (411)
Q Consensus       125 ~~l~~~~  131 (411)
                      +.|.+|+
T Consensus        94 ~~l~~f~  100 (100)
T cd02999          94 DSLAAFY  100 (100)
T ss_pred             HHHHhhC
Confidence            9988874

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PHA02278 thioredoxin-like protein

Probab=99.74  E-value=6.4e-18  Score=127.46  Aligned_cols=92  Identities=13%  Similarity=0.233  Sum_probs=80.5

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcCCCcccEEEEEeCCC
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++|. ..+.++++++|+|||+||++|+.+.|.++++++.+.+++.++.+|++.+    ++++++|+|.++||+++|++|+
T Consensus         5 ~~~~-~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~   83 (103)
T PHA02278          5 VDLN-TAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ   83 (103)
T ss_pred             HHHH-HHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence            5677 4457899999999999999999999999999988666678999999976    6899999999999999999998


Q ss_pred             CCcccCCCCCcchhHHH
Q 015217          114 PPVDYQGARDVKPIAEF  130 (411)
Q Consensus       114 ~~~~~~g~~~~~~l~~~  130 (411)
                      .+.+..|..+.+.+.++
T Consensus        84 ~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         84 LVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EEEEEeCCCCHHHHHhh
Confidence            88899998887776654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.74  E-value=9.8e-18  Score=128.63  Aligned_cols=99  Identities=48%  Similarity=0.887  Sum_probs=89.5

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccc--cHhHHHhcCCCcccEEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE--HQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~  107 (411)
                      +.++++.+|+ ..+.++++++|.||++||++|+.+.|.+.++++.+.  +.+.++.+||+.  ++.++++++|+++|+++
T Consensus         2 ~~~l~~~~~~-~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFR-KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHH-HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5678888998 556777899999999999999999999999999887  568999999998  89999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                      +|++|+.+.+|.|..+.+.+.+|+
T Consensus        81 ~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCeeEEeCCCCCHHHHHhhC
Confidence            999998788999999988888774

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.74  E-value=1.4e-17  Score=127.80  Aligned_cols=100  Identities=44%  Similarity=0.883  Sum_probs=89.5

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ++..|+.++|++.+...+++++|+||++||++|+.+.|.+.++++.+++  ++.++.+||+++ +++..+++.++|++++
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF   79 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence            3678999999966667778999999999999999999999999999887  599999999987 5888999999999999


Q ss_pred             EeCCC--CCcccCCCCCcchhHHHH
Q 015217          109 FVPGK--PPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       109 ~~~g~--~~~~~~g~~~~~~l~~~~  131 (411)
                      |.+|+  ...+|.|..+...+.+|+
T Consensus        80 ~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          80 FPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EcCCCcCCceEccCCcCHHHHHhhC
Confidence            99887  578899999999888874

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.74  E-value=2.5e-16  Score=134.14  Aligned_cols=164  Identities=27%  Similarity=0.444  Sum_probs=139.3

Q ss_pred             hhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCHHHHHHHHHHHhhhcCCC
Q 015217          194 KKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIESFALEQLETNVAP  272 (411)
Q Consensus       194 ~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~~~~~~  272 (411)
                      ......|.++|+.+.+.+.|+.+.   +.++++++++.. |++++|+++.+....|.|. .+.+.|.+||..+..     
T Consensus         6 ~~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~-----   76 (184)
T PF13848_consen    6 SELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF-----   76 (184)
T ss_dssp             SHHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-----
T ss_pred             cHHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-----
Confidence            467889999999999999999977   778999999998 9999999877778999998 899999999999965     


Q ss_pred             CCceEeCChhHHHHhcCCcc-EEE------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeE
Q 015217          273 PEVTELTSQDVMEEKCGSAA-ICF------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPAL  339 (411)
Q Consensus       273 ~~v~~l~~~~~~~~~~~~~~-~~~------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l  339 (411)
                      |.+.+++..+.......+.+ +++            +.+.++.+|++++++ +.|+|+|....+.+++.||++..++|++
T Consensus        77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~~P~~  155 (184)
T PF13848_consen   77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDDLPAL  155 (184)
T ss_dssp             TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSSSSEE
T ss_pred             ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCccCCEE
Confidence            99999999776665565544 222            347889999999988 9999999998899999999998889999


Q ss_pred             EEeecCCCcc-ccCCCCCChhHHHHHHHH
Q 015217          340 VALNVKKGVY-TPLKSAFELEHIVEFVKE  367 (411)
Q Consensus       340 ~v~~~~~~~~-~~~~~~~~~~~i~~fi~~  367 (411)
                      ++++.+++++ ..+.++++.++|.+||++
T Consensus       156 vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  156 VIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             EEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             EEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            9999776655 345788999999999975

...

>PRK10996 thioredoxin 2; Provisional

Probab=99.74  E-value=1.4e-17  Score=133.85  Aligned_cols=105  Identities=27%  Similarity=0.567  Sum_probs=95.9

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...+++++.++|+ .+..++++++|.||++||++|+.+.|.+.++++.+.+++.++.+|++++++++++|+|.++|++++
T Consensus        34 ~~~~i~~~~~~~~-~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii  112 (139)
T PRK10996         34 DGEVINATGETLD-KLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI  112 (139)
T ss_pred             CCCCEEcCHHHHH-HHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence            3456778989999 566779999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |++|+.+.++.|..+.+.+.+|+.+.
T Consensus       113 ~~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        113 FKNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            99998888899999999999998764

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-17  Score=129.97  Aligned_cols=106  Identities=30%  Similarity=0.499  Sum_probs=97.9

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+..++..+|.+.+.++..|++|.|+++||++|+.+.|.+++++..+.+++.|+.||.+++.+++.+|+|..+|++++|
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf  122 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF  122 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|.+ .-.+.|..+.+.+.++|.+.+
T Consensus       123 knGe~-~d~~vG~~~~~~l~~~i~k~l  148 (150)
T KOG0910|consen  123 KNGEK-VDRFVGAVPKEQLRSLIKKFL  148 (150)
T ss_pred             ECCEE-eeeecccCCHHHHHHHHHHHh
Confidence            98764 567889999999999998865

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.73  E-value=4.6e-17  Score=124.65  Aligned_cols=101  Identities=63%  Similarity=1.106  Sum_probs=93.7

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..+++.++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.++.++++|+|+++|++++|.+
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~   81 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA   81 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence            57888999999877777789999999999999999999999999999899999999999999999999999999999988


Q ss_pred             CCCCcccccCCCCHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +......|.|+.+.++|.+|+
T Consensus        82 ~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          82 GKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCcceeecCCCCCHHHHHHHh
Confidence            756688999999999999986

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.73  E-value=3e-17  Score=126.19  Aligned_cols=100  Identities=48%  Similarity=0.927  Sum_probs=89.1

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccc-cHhHHHhcCCCcccEEEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE-HQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~  108 (411)
                      +.++++++|++.+...+++++|.||++||++|+++.|.+..+++.++  +.+.++.+||++ .+.+|++++|.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            56888999996555566699999999999999999999999999987  469999999999 899999999999999999


Q ss_pred             EeCC-CCCcccCCCCCcchhHHHH
Q 015217          109 FVPG-KPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       109 ~~~g-~~~~~~~g~~~~~~l~~~~  131 (411)
                      |.+| +....|.|.++.+.+.+|+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            9877 4578899999999888874

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.73  E-value=4.7e-17  Score=125.57  Aligned_cols=105  Identities=21%  Similarity=0.318  Sum_probs=95.6

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChh--hh--hhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHhhCcccc
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGH--CK--KLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQG  232 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~--c~--~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~l~~~~~v~~  232 (411)
                      ...+..+|+++|.+.+.++..+++++|++.||++  |+  .+.|.+.++|..+  .+++.|+.||++.++.++++|||.+
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            3578899999999998888889999999999987  99  7889999999998  7789999999999999999999999


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +||+++|++|.  .+.|.|..+.+.|.+|+.+.
T Consensus        88 iPTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~  118 (120)
T cd03065          88 EDSIYVFKDDE--VIEYDGEFAADTLVEFLLDL  118 (120)
T ss_pred             ccEEEEEECCE--EEEeeCCCCHHHHHHHHHHH
Confidence            99999999876  45599999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=8.8e-17  Score=149.53  Aligned_cols=227  Identities=23%  Similarity=0.392  Sum_probs=146.4

Q ss_pred             cccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecc--ccHhHHH
Q 015217           22 SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDAN--EHQSLAQ   96 (411)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~--~~~~~~~   96 (411)
                      ..+++.+++.+++|+..+|+..+..+.+.++|.||++||++|+++.|.|+++++.+.+   .+.++.|||.  .+..+|+
T Consensus        31 ~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCR  110 (606)
T KOG1731|consen   31 NPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCR  110 (606)
T ss_pred             CCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHh
Confidence            3457888899999999999977777778999999999999999999999999998875   6899999997  5668999


Q ss_pred             hcCCCcccEEEEEeCCCCC----cccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHH
Q 015217           97 EYGIRGFPTIKVFVPGKPP----VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDE  172 (411)
Q Consensus        97 ~~~i~~~P~~~~~~~g~~~----~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  172 (411)
                      .|+|.++|++.+|+.+...    ..+.|+..+.++.+.+.+.+.+..   .. +.++   ++     ++.--+++.+-..
T Consensus       111 ef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~---~~-~~~~---~W-----P~f~pl~~~~~~~  178 (606)
T KOG1731|consen  111 EFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED---AQ-NRYP---SW-----PNFDPLKDTTTLE  178 (606)
T ss_pred             hcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH---hh-hcCC---CC-----CCCCCCCCcchHH
Confidence            9999999999999775332    344556666677776665543221   11 1111   11     1111222222222


Q ss_pred             HHhc----CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcc
Q 015217          173 LVLK----SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI  247 (411)
Q Consensus       173 ~~~~----~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~  247 (411)
                      .+.+    ....+.+.|-..      ...-.+..+-..+.. .+.+..+-++..-.+.+ ++....|...++++|..+++
T Consensus       179 ~l~~~~~~~~~yvAiv~e~~------~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l  251 (606)
T KOG1731|consen  179 ELDEGISTTANYVAIVFETE------PSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPL  251 (606)
T ss_pred             HHhcccccccceeEEEEecC------CcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCccccc
Confidence            2222    223444445321      122233444444433 35555554455555555 88889999999998776444


Q ss_pred             cccCCCCHHHHHHHHHHHhhh
Q 015217          248 PYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       248 ~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      . ....+.+...+-|.+.++.
T Consensus       252 ~-~~~~s~~~y~~~I~~~lg~  271 (606)
T KOG1731|consen  252 W-PSSSSRSAYVKKIDDLLGD  271 (606)
T ss_pred             c-cccccHHHHHHHHHHHhcC
Confidence            3 3334555666666665553

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.7e-16  Score=146.62  Aligned_cols=209  Identities=37%  Similarity=0.606  Sum_probs=165.8

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      .....++...+..++.....+++|.||++||++|+.+.+.|.+++..+++.+.++.|||+.+..+|++|+|.++|++.+|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f  108 (383)
T KOG0191|consen   29 GVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVF  108 (383)
T ss_pred             cchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEE
Confidence            33444446677777778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHhhhcCC--CCC-ceEeCChhHHHHhcCCc---cEEE----------eHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQLETNVA--PPE-VTELTSQDVMEEKCGSA---AICF----------YLEMLLSV  303 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~--~~~-v~~l~~~~~~~~~~~~~---~~~~----------~~~~~~~~  303 (411)
                      ..+ ..++.|.|..+.+.+.+|+...+.....  .+. +.+++..+.-......+   -+.|          +.+.|.++
T Consensus       109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~  187 (383)
T KOG0191|consen  109 RPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKL  187 (383)
T ss_pred             cCC-CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHH
Confidence            988 5699999999999999999888764432  333 55555544433222221   2333          33789999


Q ss_pred             HHHhhc-CccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHccC
Q 015217          304 AEKFKR-GHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRG  371 (411)
Q Consensus       304 a~~~~~-~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g  371 (411)
                      |..+.. ..+..+.++++.....+.++++..  +|++.++.+...-...|.+.-+.+.|.+|+.+...-
T Consensus       188 a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~--~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~  254 (383)
T KOG0191|consen  188 AKLLKSKENVELGKIDATVHKSLASRLEVRG--YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR  254 (383)
T ss_pred             HHHhccCcceEEEeeccchHHHHhhhhcccC--CceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence            999874 458888888877788999999986  999988876555133456778999999999988544

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.71  E-value=4.6e-17  Score=124.06  Aligned_cols=94  Identities=13%  Similarity=0.188  Sum_probs=78.4

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---hHHHhcCCCcccEEEEEeC
Q 015217           36 TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        36 ~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.++|++.+.. ++++++|.||++||++|+.+.|.++++++.+ +.+.|+.||++++.   +++++|+|.++|++++|++
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            34667755543 4889999999999999999999999999998 66899999999874   8999999999999999999


Q ss_pred             CCCCcccCCCCCcchhHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~  131 (411)
                      |+.+.++.|.. +..+.+.+
T Consensus        81 G~~v~~~~G~~-~~~l~~~~   99 (103)
T cd02985          81 GEKIHEEEGIG-PDELIGDV   99 (103)
T ss_pred             CeEEEEEeCCC-HHHHHHHH
Confidence            98888888854 44444443

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>TIGR01068 thioredoxin thioredoxin

Probab=99.71  E-value=7e-17  Score=123.13  Aligned_cols=99  Identities=32%  Similarity=0.640  Sum_probs=88.9

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217           36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP  115 (411)
Q Consensus        36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~  115 (411)
                      +.++|.+.+...+++++|+||++||++|+.+.+.+.++++.+.+++.++.+|+++++.++++|++.++|++++|++|+..
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~   81 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV   81 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence            45677755555567999999999999999999999999999988899999999999999999999999999999988877


Q ss_pred             cccCCCCCcchhHHHHHHH
Q 015217          116 VDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       116 ~~~~g~~~~~~l~~~~~~~  134 (411)
                      .++.|..+.+.+.+|+.+.
T Consensus        82 ~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        82 DRSVGALPKAALKQLINKN  100 (101)
T ss_pred             eeecCCCCHHHHHHHHHhh
Confidence            8888999989999988754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.71  E-value=2.7e-16  Score=134.68  Aligned_cols=201  Identities=23%  Similarity=0.417  Sum_probs=150.8

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-----CeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-----KVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-----~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      +..++.. +.+.+..++|.||++||+.++.+.|.|.++|..++.     ++.+|.|||+.+..++.+|.|.++||+.+|+
T Consensus         2 t~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    2 TSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            4556666 456788999999999999999999999999988864     6999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCC-ccEEE-e--------HHHHHHHHHHhhcC
Q 015217          241 ADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGS-AAICF-Y--------LEMLLSVAEKFKRG  310 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~~~-~--------~~~~~~~a~~~~~~  310 (411)
                      +|.--...|.|.++++.+.+||.+.+.     ..+.++.+.++++....+ +..++ +        .+.++++|.-++++
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s-----~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~d  155 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLS-----DPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDD  155 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhc-----cHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhc
Confidence            887655689999999999999999985     458888888888876653 33333 2        37999999999998


Q ss_pred             ccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCcc-ccCCCCC-ChhHHHHHHHHHccCCCCCCCCCC
Q 015217          311 HYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVY-TPLKSAF-ELEHIVEFVKEAGRGGKGNLPLDG  380 (411)
Q Consensus       311 ~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~-~~~~~~~-~~~~i~~fi~~~~~g~~~~~~~~~  380 (411)
                       ..|..--++    ....  ....+.+ ++++++..... .+|.|.+ +-+.|..||.+=--+-.+..+.++
T Consensus       156 -c~f~V~~gD----~~~~--~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN  219 (375)
T KOG0912|consen  156 -CVFLVGFGD----LLKP--HEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFEN  219 (375)
T ss_pred             -cEEEeeccc----cccC--CCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhcc
Confidence             776543321    1111  1111122 56666553332 2688885 679999999886555444444443

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.70  E-value=2e-16  Score=124.67  Aligned_cols=112  Identities=46%  Similarity=0.890  Sum_probs=103.4

Q ss_pred             CCceEeCChhHHHHhcCCccEEE-----------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCC
Q 015217          273 PEVTELTSQDVMEEKCGSAAICF-----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYG  335 (411)
Q Consensus       273 ~~v~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~  335 (411)
                      |.+.++++++.++..|..+.+|+                 +.+.++.+|++|+++++.|+|+|.+++..+++.||++..+
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~   81 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG   81 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence            67899999999999998888888                 3579999999999999999999999999999999998778


Q ss_pred             CCeEEEeecCCCccccCCCCCChhHHHHHHHHHccCCCCCCCCCCCCcc
Q 015217          336 YPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSI  384 (411)
Q Consensus       336 ~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~~~~~~p~~  384 (411)
                      +|++++++..+++|.++++++|.++|.+|+.+++.|+....|+..+|.+
T Consensus        82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p~~  130 (130)
T cd02983          82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGPTLPVNGLPKV  130 (130)
T ss_pred             CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcccccCCCCCCC
Confidence            9999999987779987999999999999999999999999999999863

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PTZ00062 glutaredoxin; Provisional

Probab=99.70  E-value=3.3e-16  Score=132.17  Aligned_cols=161  Identities=10%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217           36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP  115 (411)
Q Consensus        36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~  115 (411)
                      +.+++.+.+....+.++++|||+||++|+.+.+.+.++++.++ .+.|+.||.+        |+|.++|++++|++|+.+
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i   75 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI   75 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence            3456664433234789999999999999999999999999986 5999999977        999999999999999988


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeC-----CCC
Q 015217          116 VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFA-----PWC  190 (411)
Q Consensus       116 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~-----~~c  190 (411)
                      .++.|. ++..+..++.++..                      .++...  .....+.+.++++  ++.|..     ++|
T Consensus        76 ~r~~G~-~~~~~~~~~~~~~~----------------------~~~~~~--~~~~v~~li~~~~--Vvvf~Kg~~~~p~C  128 (204)
T PTZ00062         76 NSLEGC-NTSTLVSFIRGWAQ----------------------KGSSED--TVEKIERLIRNHK--ILLFMKGSKTFPFC  128 (204)
T ss_pred             eeeeCC-CHHHHHHHHHHHcC----------------------CCCHHH--HHHHHHHHHhcCC--EEEEEccCCCCCCC
Confidence            888876 47778888876531                      111100  1122222344444  445544     699


Q ss_pred             hhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh----hCccccccEEEE
Q 015217          191 GHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS----KFNVQGFPTILV  238 (411)
Q Consensus       191 ~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~----~~~v~~~P~i~~  238 (411)
                      ++|+.....+.+.      .+.|..+|...++++.+    .-|...+|.|++
T Consensus       129 ~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        129 RFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             hhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence            9999999888853      36666777776665433    345667898886

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.70  E-value=7.8e-17  Score=121.21  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ..+-.++..+|+ ...+.+++++|.||++|  |++|+.+.|.++++++.+++.+.|+.+|++++++++.+|+|.++||++
T Consensus        10 ~~~~~~~~~~~~-~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          10 HGWPRVDAATLD-DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             cCCcccccccHH-HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            456689999999 56688999999999997  999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhH
Q 015217          108 VFVPGKPPVDYQGARDVKPIA  128 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~  128 (411)
                      +|++|+.+.+..|..+.+.+.
T Consensus        89 ~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEEEEEEeCccCHHHHh
Confidence            999998888888887766543

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.70  E-value=8.6e-17  Score=122.52  Aligned_cols=97  Identities=49%  Similarity=0.976  Sum_probs=87.2

Q ss_pred             EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +++.++|. ..+.++++++|.||++||++|+.+.+.|.++++.+  .+.+.++.+||+++..+|++|+|.++|++++|.+
T Consensus         2 ~l~~~~~~-~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFD-ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHH-HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            56778888 55566669999999999999999999999999999  5689999999999999999999999999999988


Q ss_pred             C-CCCcccCCCCCcchhHHHH
Q 015217          112 G-KPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       112 g-~~~~~~~g~~~~~~l~~~~  131 (411)
                      + ....+|.|..+.+.+.+|+
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            7 6689999999988888764

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.70  E-value=1.8e-16  Score=135.37  Aligned_cols=178  Identities=27%  Similarity=0.528  Sum_probs=129.4

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA  252 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~  252 (411)
                      ++...|+|.||+|||++|+++.|+|.++.-.+++   -++++.+||+..+.++.+|||+++|+|.+|+++.  .+.|.|+
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~--a~dYRG~  118 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH--AIDYRGG  118 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe--eeecCCC
Confidence            3456999999999999999999999999988876   4999999999999999999999999999999766  8999999


Q ss_pred             CCHHHHHHHHHHHhhhcCCCCCceEeCC-hhHHHHhcCCccEEE---------eHHHHHHHHHHhhcCccEEEEecCCCc
Q 015217          253 RTAGAIESFALEQLETNVAPPEVTELTS-QDVMEEKCGSAAICF---------YLEMLLSVAEKFKRGHYSFVWAAAGKQ  322 (411)
Q Consensus       253 ~~~~~i~~fi~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~f~~i~~~~~  322 (411)
                      ++.+.|.+|..+...     +.+..++. +.++..+...++..|         +.+.+..+|...-.. ..|+-..    
T Consensus       119 R~Kd~iieFAhR~a~-----aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~~~-a~FfSas----  188 (468)
T KOG4277|consen  119 REKDAIIEFAHRCAA-----AIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKFSV-ARFFSAS----  188 (468)
T ss_pred             ccHHHHHHHHHhccc-----ceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhheee-eeeeccc----
Confidence            999999999988764     66666666 444555555554333         445555555433212 2233211    


Q ss_pred             hhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHc
Q 015217          323 PDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAG  369 (411)
Q Consensus       323 ~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~  369 (411)
                      .+++-... +....|+++++  +++.|..++ +.+.+++.+||+.-+
T Consensus       189 eeVaPe~~-~~kempaV~VF--KDetf~i~d-e~dd~dLseWinRER  231 (468)
T KOG4277|consen  189 EEVAPEEN-DAKEMPAVAVF--KDETFEIED-EGDDEDLSEWINRER  231 (468)
T ss_pred             cccCCccc-chhhccceEEE--ccceeEEEe-cCchhHHHHHHhHhh
Confidence            22222222 22348999999  566665554 346678999998643

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.70  E-value=1.3e-16  Score=121.44  Aligned_cols=95  Identities=20%  Similarity=0.433  Sum_probs=82.4

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEEeCCC
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      -+.++|+ .++.++++++|+||++||++|+.+.|.+.+++..+++ .+.|+.+|++ +.+++++|+|+++|++++|++|+
T Consensus         5 ~~~~~~~-~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~   82 (102)
T cd02948           5 NNQEEWE-ELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE   82 (102)
T ss_pred             cCHHHHH-HHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence            3567788 5667899999999999999999999999999999885 4789999999 78899999999999999999998


Q ss_pred             CCcccCCCCCcchhHHHHH
Q 015217          114 PPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       114 ~~~~~~g~~~~~~l~~~~~  132 (411)
                      .+.+..|. +.+.+.+++.
T Consensus        83 ~~~~~~G~-~~~~~~~~i~  100 (102)
T cd02948          83 LVAVIRGA-NAPLLNKTIT  100 (102)
T ss_pred             EEEEEecC-ChHHHHHHHh
Confidence            77777774 7777777665

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.69  E-value=2.1e-16  Score=120.41  Aligned_cols=98  Identities=32%  Similarity=0.649  Sum_probs=87.2

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      .+..++..+|.+.+ +.  .++|.||++||++|+.+.|.|.+++..++. .+.++.+||+.++.++++|+|.++|++++|
T Consensus         2 ~v~~l~~~~f~~~~-~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02994           2 NVVELTDSNWTLVL-EG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA   78 (101)
T ss_pred             ceEEcChhhHHHHh-CC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence            47889999999864 32  379999999999999999999999998875 599999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      ++|.  ...|.|..+.++|.+|+.
T Consensus        79 ~~g~--~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          79 KDGV--FRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             CCCC--EEEecCCCCHHHHHHHHh
Confidence            7764  578999999999999985

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.69  E-value=2.3e-16  Score=121.64  Aligned_cols=102  Identities=25%  Similarity=0.614  Sum_probs=89.3

Q ss_pred             CcEEeCccchHHHHh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-chhHHh-hCccccccE
Q 015217          161 ESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-EKSLMS-KFNVQGFPT  235 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-~~~l~~-~~~v~~~P~  235 (411)
                      .|.+++..+|...+.  +.+++++|.||++||++|+.+.+.|.++++.+++. +.++.|||+. +..+++ .+++..+|+
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            378889999998764  34679999999999999999999999999999874 9999999987 577886 599999999


Q ss_pred             EEEEcCCCCCcccccCC-CCHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGA-RTAGAIESFA  262 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~-~~~~~i~~fi  262 (411)
                      +++|.+++...+.|.|. ++.++|.+|+
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            99998877678999995 7999998885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.68  E-value=4e-16  Score=119.61  Aligned_cols=101  Identities=46%  Similarity=0.819  Sum_probs=90.5

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ++..|+..+|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+  ++.|+.+||+.+ +++..+++.++|++++
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF   79 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence            4788999999998777778999999999999999999999999999987  599999999876 5888999999999999


Q ss_pred             EcCCC-CCcccccCCCCHHHHHHHH
Q 015217          239 FGADK-DSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       239 ~~~~~-~~~~~y~g~~~~~~i~~fi  262 (411)
                      |.++. .....|.|..+.++|.+||
T Consensus        80 ~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          80 FPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EcCCCcCCceEccCCcCHHHHHhhC
Confidence            98776 4578899999999999885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK09381 trxA thioredoxin; Provisional

Probab=99.68  E-value=6.2e-16  Score=119.54  Aligned_cols=106  Identities=30%  Similarity=0.630  Sum_probs=95.5

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+++++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++....++++|++..+|++++|
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   82 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence            45888999999987777788999999999999999999999999999998999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ...++.|..+.+.|..|+..++
T Consensus        83 ~~G~-~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         83 KNGE-VAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             eCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence            7654 3567789889999999998764

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.68  E-value=3.6e-16  Score=119.66  Aligned_cols=93  Identities=43%  Similarity=0.886  Sum_probs=82.1

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++|+ .+ .++++++|.||++||++|+.+.|.|+++++.+++   .+.++.+||+..+.++++++|.++|++++|.+| .
T Consensus         7 ~~~~-~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~   83 (104)
T cd03000           7 DSFK-DV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L   83 (104)
T ss_pred             hhhh-hh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence            6777 44 4578999999999999999999999999999853   489999999999999999999999999999766 4


Q ss_pred             CcccCCCCCcchhHHHHHH
Q 015217          115 PVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       115 ~~~~~g~~~~~~l~~~~~~  133 (411)
                      ...|.|..+.+.+.+|+.+
T Consensus        84 ~~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          84 AYNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             ceeecCCCCHHHHHHHHHh
Confidence            5789999999999998875

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.67  E-value=6.2e-16  Score=118.80  Aligned_cols=101  Identities=44%  Similarity=0.823  Sum_probs=91.1

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCC-chhHHhhCccccccEEEE
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS-EKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~-~~~l~~~~~v~~~P~i~~  238 (411)
                      +..++..++...+.+.+++++|.||++||++|+.+.+.|.++++.+.  +.+.++.+||+. .+.++++|++.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            56788899998765566699999999999999999999999999997  469999999999 899999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHH
Q 015217          239 FGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      |.+++.....|.|..+.++|.+|+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            988766688999999999998885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.67  E-value=5.4e-16  Score=122.29  Aligned_cols=104  Identities=14%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE-EEeCCC
Q 015217           36 TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK-VFVPGK  113 (411)
Q Consensus        36 ~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~-~~~~g~  113 (411)
                      +.++|++.+. ..+++++|.||++||++|+.+.|.++++++.+++.+.|+.||+|+.++++..|+|++.|+++ +|++|.
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence            3567885554 46789999999999999999999999999999988999999999999999999999777666 889887


Q ss_pred             -CCcccCC--------CCCcchhHHHHHHHHHHHH
Q 015217          114 -PPVDYQG--------ARDVKPIAEFALQQIKALL  139 (411)
Q Consensus       114 -~~~~~~g--------~~~~~~l~~~~~~~~~~~~  139 (411)
                       .+.+..|        ..+.+++++-+...++.++
T Consensus        90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~  124 (142)
T PLN00410         90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR  124 (142)
T ss_pred             EEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence             4667777        4566677777766665543

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.67  E-value=4.8e-16  Score=118.74  Aligned_cols=98  Identities=40%  Similarity=0.892  Sum_probs=87.4

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      +..++.++|.+.+.+  +.++|.||++||++|+.+.|.|.++++.+.+   .+.++.+||+.+..++++|+|..+|++++
T Consensus         2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            678899999997633  3599999999999999999999999999987   69999999999999999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHH
Q 015217          239 FGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      |+++. ...+|.|..+.++|.+||
T Consensus        80 ~~~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCC-eeeEeeCCCCHHHHHhhC
Confidence            97665 467899999999988874

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.66  E-value=3.2e-15  Score=129.83  Aligned_cols=179  Identities=20%  Similarity=0.265  Sum_probs=130.1

Q ss_pred             CCeEEEEEeC---CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC
Q 015217          178 KDLWIVEFFA---PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR  253 (411)
Q Consensus       178 ~~~~lv~f~~---~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~  253 (411)
                      +...++.|++   +||++|+.+.|.+++++..+.. .+.++.+|.+.+++++++|+|.++||+++|++|.....++.|..
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~   98 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP   98 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence            4455777888   9999999999999999999854 35566666668999999999999999999998765335889988


Q ss_pred             CHHHHHHHHHHHhhhcCCCCCceEeCC--hhHHHHhcCCccEE-E------eH----HHHHHHHHHhhcCccEEEEecCC
Q 015217          254 TAGAIESFALEQLETNVAPPEVTELTS--QDVMEEKCGSAAIC-F------YL----EMLLSVAEKFKRGHYSFVWAAAG  320 (411)
Q Consensus       254 ~~~~i~~fi~~~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~-~------~~----~~~~~~a~~~~~~~~~f~~i~~~  320 (411)
                      +.+.+.+|+...+.....   -..++.  .+.+.....+..+. |      .+    ..++.++.++ + .+.+..+|.+
T Consensus        99 ~~~~l~~~i~~~~~~~~~---~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~-~i~~~~vD~~  173 (215)
T TIGR02187        99 AGYEFAALIEDIVRVSQG---EPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-D-KILGEMIEAN  173 (215)
T ss_pred             CHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-C-ceEEEEEeCC
Confidence            889999999887643222   223333  22233333333333 2      22    4455555543 2 3888889999


Q ss_pred             CchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHH
Q 015217          321 KQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE  367 (411)
Q Consensus       321 ~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~  367 (411)
                      ..+++++++|+..  .|++++++  +++  .+.|..+.+++.+||.+
T Consensus       174 ~~~~~~~~~~V~~--vPtl~i~~--~~~--~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       174 ENPDLAEKYGVMS--VPKIVINK--GVE--EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             CCHHHHHHhCCcc--CCEEEEec--CCE--EEECCCCHHHHHHHHHh
Confidence            9999999999986  99999984  222  16677888999999864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.66  E-value=6.6e-16  Score=117.51  Aligned_cols=100  Identities=21%  Similarity=0.451  Sum_probs=84.2

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCCeEEEEEeC-----CCchhHHhhCcc
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFA--PWCG---HCKKLAPEWKKAANNLKGKVKLGHVDC-----DSEKSLMSKFNV  230 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~--~~c~---~c~~~~~~~~~~a~~~~~~~~f~~v~~-----~~~~~l~~~~~v  230 (411)
                      .++.|+..+|.+. ...++.++|.||+  +||+   +|+.+.+.+.+++.    .+.++.|||     ..+.+||++|+|
T Consensus         2 g~v~L~~~nF~~~-v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           2 GCVDLDTVTFYKV-IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             CeeECChhhHHHH-HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence            3788999999996 5777889999999  8888   66666666665554    389999999     457889999999


Q ss_pred             c--cccEEEEEcCCC-CCcccccCC-CCHHHHHHHHHHH
Q 015217          231 Q--GFPTILVFGADK-DSPIPYEGA-RTAGAIESFALEQ  265 (411)
Q Consensus       231 ~--~~P~i~~~~~~~-~~~~~y~g~-~~~~~i~~fi~~~  265 (411)
                      +  ++|||.+|+++. ..+..|.|. ++.+.|++|+.++
T Consensus        77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9  999999999773 457899997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.66  E-value=4.9e-16  Score=118.99  Aligned_cols=93  Identities=20%  Similarity=0.341  Sum_probs=81.6

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccc----cHhHHHhcCCCcccEEEEEe
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~~~~  110 (411)
                      ++|. .+..++++++|.||++||++|+.+.+.+   .++++.+.+++.++.+|+++    ...++++|++.++|++++|.
T Consensus         2 ~~~~-~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~   80 (104)
T cd02953           2 AALA-QALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG   80 (104)
T ss_pred             HHHH-HHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            3566 5667899999999999999999999988   67888887789999999986    57899999999999999998


Q ss_pred             --CCCCCcccCCCCCcchhHHHH
Q 015217          111 --PGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       111 --~g~~~~~~~g~~~~~~l~~~~  131 (411)
                        +|+.+.++.|..+.+.+.+++
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHh
Confidence              577789999999999888775

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.66  E-value=1.1e-15  Score=131.25  Aligned_cols=110  Identities=36%  Similarity=0.835  Sum_probs=97.0

Q ss_pred             CCCcEEeCccchHHHHhcC----CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217          159 SNESIELNSSNFDELVLKS----KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~----~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ...+.++++.+|.+.+...    .++++|.||++||++|+.+.|.|.++++.+++.+.|+.+||+.++.++++|+|.++|
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P  108 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP  108 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence            4579999999999976543    479999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccc-cCCCCHHHHHHHHHHHhhhcC
Q 015217          235 TILVFGADKDSPIPY-EGARTAGAIESFALEQLETNV  270 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y-~g~~~~~~i~~fi~~~~~~~~  270 (411)
                      ++++|++|.  .+.| .|..+.+++.+|+.+.+....
T Consensus       109 Tl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~~~~  143 (224)
T PTZ00443        109 TLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFKKAL  143 (224)
T ss_pred             EEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence            999999764  4444 577899999999999986543

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.66  E-value=4.9e-16  Score=120.07  Aligned_cols=101  Identities=19%  Similarity=0.412  Sum_probs=86.8

Q ss_pred             EEeCccchHHHHhc--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          163 IELNSSNFDELVLK--SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       163 ~~l~~~~~~~~~~~--~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..++.++|.+.+..  .+++++|.||++||++|+.+.|.|.++++.+.+ ++.++.||++.++.++++++|.++|++++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            34566777765543  567999999999999999999999999999986 599999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      +++. ....+.|..+.+.|.+|+.+
T Consensus        87 ~~g~-~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 INGQ-VTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECCE-EEEEecCCCCHHHHHHHHhc
Confidence            8664 35666898999999999864

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.65  E-value=1.4e-15  Score=114.75  Aligned_cols=93  Identities=27%  Similarity=0.550  Sum_probs=82.6

Q ss_pred             chHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcc
Q 015217          169 NFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI  247 (411)
Q Consensus       169 ~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~  247 (411)
                      +|.+.+.+. +++++|.||++||++|+.+.+.+.+++..+.+.+.++.||++.+..++++|+|.++|++++|++|. ...
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~   80 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD   80 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence            566666555 679999999999999999999999999999988999999999999999999999999999998554 356


Q ss_pred             cccCCCCHHHHHHHH
Q 015217          248 PYEGARTAGAIESFA  262 (411)
Q Consensus       248 ~y~g~~~~~~i~~fi  262 (411)
                      .+.|..+.+.|..|+
T Consensus        81 ~~~g~~~~~~l~~~l   95 (96)
T cd02956          81 GFQGAQPEEQLRQML   95 (96)
T ss_pred             eecCCCCHHHHHHHh
Confidence            789999999998886

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.65  E-value=3.1e-16  Score=121.75  Aligned_cols=92  Identities=23%  Similarity=0.361  Sum_probs=80.7

Q ss_pred             CCcEEeCccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ..+.+++.++|.+.+...  +++++|+||++||++|+.+.|.++++++.+.+ +.|+.||+++. .++++|+|.++|+++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            346788899999666554  38999999999999999999999999999865 78999999988 999999999999999


Q ss_pred             EEeCCCCCcccCCCCC
Q 015217          108 VFVPGKPPVDYQGARD  123 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~  123 (411)
                      +|++|+.+.++.|..+
T Consensus        82 ~f~~G~~v~~~~G~~~   97 (113)
T cd02957          82 VYKNGELIDNIVGFEE   97 (113)
T ss_pred             EEECCEEEEEEecHHH
Confidence            9999988778777544

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.65  E-value=1.3e-15  Score=116.36  Aligned_cols=99  Identities=53%  Similarity=0.936  Sum_probs=89.7

Q ss_pred             eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEEEcCC
Q 015217          165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD  242 (411)
Q Consensus       165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~  242 (411)
                      |+..+|.+.+ ..+++++|.||++||+.|+.+.+.|.+++..+.+  .+.++.+||+.+..++++|++..+|++++|+++
T Consensus         1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            4567788765 4788999999999999999999999999999988  699999999999999999999999999999887


Q ss_pred             CCCcccccCCCCHHHHHHHHHHH
Q 015217          243 KDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       243 ~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +. ...|.|..+.+.|..||.++
T Consensus        80 ~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        80 KK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             Cc-ceeecCCCCHHHHHHHHHhc
Confidence            76 88999999999999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.2e-15  Score=131.95  Aligned_cols=109  Identities=33%  Similarity=0.657  Sum_probs=99.3

Q ss_pred             CCCCcEEeCccchHHHHhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLKS--KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~--~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ..+.+.++|+.+|...++..  ..|++|+||++||++|+.+.|.+++++..+++++.+++|||+.++.++..|||+++|+
T Consensus        21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence            44559999999999988665  3499999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +++|++|.. .--|.|....+.|..|+.++..
T Consensus       101 V~af~dGqp-VdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118         101 VYAFKDGQP-VDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             EEEeeCCcC-ccccCCCCcHHHHHHHHHHhcC
Confidence            999998874 5678898888999999999874

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.64  E-value=1.8e-15  Score=117.22  Aligned_cols=84  Identities=42%  Similarity=0.888  Sum_probs=74.2

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccc--cHhHHHhcCCCcccE
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANE--HQSLAQEYGIRGFPT  105 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~--~~~~~~~~~i~~~P~  105 (411)
                      .+.+++.++|+..+...+++++|.||++||++|+.+.|.|+++++.+++   .+.++.+||+.  +..+|++|+|+++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            4778999999976666678999999999999999999999999998763   58999999964  568999999999999


Q ss_pred             EEEEeCCCC
Q 015217          106 IKVFVPGKP  114 (411)
Q Consensus       106 ~~~~~~g~~  114 (411)
                      +++|++|..
T Consensus        82 ~~lf~~~~~   90 (114)
T cd02992          82 LRYFPPFSK   90 (114)
T ss_pred             EEEECCCCc
Confidence            999988763

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=8.3e-16  Score=115.84  Aligned_cols=79  Identities=29%  Similarity=0.639  Sum_probs=72.5

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCc
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      ...+++++|+|||+||++|+.+.|.+.+++.++++ +.|++||+++..+++++++|...||+++|++|+...++.|....
T Consensus        18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~   96 (106)
T KOG0907|consen   18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA   96 (106)
T ss_pred             hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence            34568999999999999999999999999999998 99999999999999999999999999999999888888776543

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.64  E-value=1.9e-15  Score=121.72  Aligned_cols=98  Identities=20%  Similarity=0.325  Sum_probs=84.3

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc--HhHHHhcCCCcccEEEEEe-CCCC
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--QSLAQEYGIRGFPTIKVFV-PGKP  114 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~P~~~~~~-~g~~  114 (411)
                      .+++ .+..++++++|+||++||++|+.+.|.+.++++.+.+.+.|+.||++..  ..++++|+|.++|++++|. +|+.
T Consensus        11 ~~~~-~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~   89 (142)
T cd02950          11 TPPE-VALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE   89 (142)
T ss_pred             CCHH-HHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence            4566 5667899999999999999999999999999999987778888877754  5899999999999999995 6777


Q ss_pred             CcccCCCCCcchhHHHHHHHHH
Q 015217          115 PVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       115 ~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +.++.|..+.+.+.+++.+.+.
T Consensus        90 v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          90 EGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc
Confidence            7888999988888888887663

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.63  E-value=1.8e-15  Score=114.15  Aligned_cols=91  Identities=26%  Similarity=0.505  Sum_probs=83.4

Q ss_pred             hHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCC
Q 015217           41 KSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG  120 (411)
Q Consensus        41 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g  120 (411)
                      +..+.+.+++++|+||++||+.|+.+.|.++++++.+.+++.++.+|++++++++.++++.++|++++|++|+.+.++.|
T Consensus         6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g   85 (97)
T cd02949           6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG   85 (97)
T ss_pred             HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence            33556788999999999999999999999999999998889999999999999999999999999999999888889999


Q ss_pred             CCCcchhHHHH
Q 015217          121 ARDVKPIAEFA  131 (411)
Q Consensus       121 ~~~~~~l~~~~  131 (411)
                      ..+.+.+.+|+
T Consensus        86 ~~~~~~~~~~l   96 (97)
T cd02949          86 VKMKSEYREFI   96 (97)
T ss_pred             CccHHHHHHhh
Confidence            99988888775

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.63  E-value=2e-15  Score=114.07  Aligned_cols=84  Identities=27%  Similarity=0.602  Sum_probs=76.7

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCccccccEEEEEcCCCCCcccccCCCC
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                      ..+++++|.||++||++|+.+.|.|.++++.+++ +.++.||++ ..+.++++|+|.++||+++|+++  ...+|.|..+
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~   92 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRT   92 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCC
Confidence            4567999999999999999999999999999975 788999988 78899999999999999999877  4789999999


Q ss_pred             HHHHHHHH
Q 015217          255 AGAIESFA  262 (411)
Q Consensus       255 ~~~i~~fi  262 (411)
                      .+.|.+|+
T Consensus        93 ~~~l~~f~  100 (100)
T cd02999          93 LDSLAAFY  100 (100)
T ss_pred             HHHHHhhC
Confidence            99999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.63  E-value=1.7e-15  Score=117.03  Aligned_cols=90  Identities=19%  Similarity=0.295  Sum_probs=78.9

Q ss_pred             CcEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           31 PVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        31 ~~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      .+..+++ ++|. ..+.++++++|+||++||++|+.+.|.++++++.+++ +.|+.||+++.++++++|+|.++|++++|
T Consensus         5 ~v~~i~~~~~~~-~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f   82 (113)
T cd02989           5 KYREVSDEKEFF-EIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF   82 (113)
T ss_pred             CeEEeCCHHHHH-HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence            4567777 7888 5556788999999999999999999999999998865 89999999999999999999999999999


Q ss_pred             eCCCCCcccCCCC
Q 015217          110 VPGKPPVDYQGAR  122 (411)
Q Consensus       110 ~~g~~~~~~~g~~  122 (411)
                      ++|+.+.++.|..
T Consensus        83 k~G~~v~~~~g~~   95 (113)
T cd02989          83 KNGKTVDRIVGFE   95 (113)
T ss_pred             ECCEEEEEEECcc
Confidence            9998766665543

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.62  E-value=1.7e-15  Score=114.87  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCc
Q 015217          168 SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP  246 (411)
Q Consensus       168 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~  246 (411)
                      +++.+.+.. .+++++|.||++||++|+.+.|.+.+++..+.+.+.|+.||.+.+++++++|+|.++||+++|++|.. .
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~-v   81 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH-M   81 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE-E
Confidence            456665543 56799999999999999999999999999999889999999999999999999999999999998764 4


Q ss_pred             ccccCCCC
Q 015217          247 IPYEGART  254 (411)
Q Consensus       247 ~~y~g~~~  254 (411)
                      .+..|..+
T Consensus        82 ~~~~G~~~   89 (114)
T cd02954          82 KIDLGTGN   89 (114)
T ss_pred             EEEcCCCC
Confidence            44455443

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.62  E-value=5.1e-15  Score=113.47  Aligned_cols=99  Identities=44%  Similarity=0.820  Sum_probs=87.4

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCC--chhHHhhCccccccEEE
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS--EKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~  237 (411)
                      +..++..++.+.+ ..+++++|.||++||++|+.+.+.+.++++.+.  +.+.++.+||+.  +..++++++++++|+++
T Consensus         2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5778888898865 556699999999999999999999999999997  568999999998  88999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHH
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +|+++. ...+|.|..+.+.+.+|+
T Consensus        81 ~~~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCC-eeEEeCCCCCHHHHHhhC
Confidence            998765 477899999999988874

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.61  E-value=4.1e-15  Score=112.41  Aligned_cols=92  Identities=22%  Similarity=0.459  Sum_probs=77.0

Q ss_pred             ccchhHHHhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217           37 PNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP  115 (411)
Q Consensus        37 ~~~f~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~  115 (411)
                      .++|++.+... +++++|.||++||++|+.+.+.++++++.+.+.+.++.+|+++.++++++|++.++|++++|.+|+.+
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence            35667444333 58999999999999999999999999999867899999999999999999999999999999988877


Q ss_pred             cccCCCCCcchhHH
Q 015217          116 VDYQGARDVKPIAE  129 (411)
Q Consensus       116 ~~~~g~~~~~~l~~  129 (411)
                      .++.|. ..+.|.+
T Consensus        82 ~~~~g~-~~~~l~~   94 (97)
T cd02984          82 DRVSGA-DPKELAK   94 (97)
T ss_pred             EEEeCC-CHHHHHH
Confidence            677774 3444443

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.61  E-value=5.2e-15  Score=139.65  Aligned_cols=107  Identities=33%  Similarity=0.583  Sum_probs=93.4

Q ss_pred             CCCCcEEeCccchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-ccHhHHH-hcCCCc
Q 015217           28 SSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-EHQSLAQ-EYGIRG  102 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-~~~~~~~-~~~i~~  102 (411)
                      .+..+..|+.++|++.+.  ..+++++|.||++||++|+.+.|.|.++++.+.+ .+.|+.+||+ .+..+|. +|+|.+
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence            456788999999995542  5788999999999999999999999999999976 5999999999 8888997 599999


Q ss_pred             ccEEEEEeCCCC-CcccCC-CCCcchhHHHHHHH
Q 015217          103 FPTIKVFVPGKP-PVDYQG-ARDVKPIAEFALQQ  134 (411)
Q Consensus       103 ~P~~~~~~~g~~-~~~~~g-~~~~~~l~~~~~~~  134 (411)
                      +||+++|++|.. ...|.| .++.+.|+.|+...
T Consensus       423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            999999988753 678875 79999999999753

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.61  E-value=5e-15  Score=139.79  Aligned_cols=106  Identities=33%  Similarity=0.549  Sum_probs=91.5

Q ss_pred             CCCCcEEeCccchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccH-hHH-HhcCCCc
Q 015217           28 SSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQ-SLA-QEYGIRG  102 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~-~~~-~~~~i~~  102 (411)
                      .+..+++|+.++|++.+.  ..+++++|.||++||++|+.+.|.|+++++.+.+. +.|+.|||+.+. .++ ++|+|.+
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence            566899999999996552  47889999999999999999999999999999874 899999999764 455 6899999


Q ss_pred             ccEEEEEeCCC-CCcccC-CCCCcchhHHHHHH
Q 015217          103 FPTIKVFVPGK-PPVDYQ-GARDVKPIAEFALQ  133 (411)
Q Consensus       103 ~P~~~~~~~g~-~~~~~~-g~~~~~~l~~~~~~  133 (411)
                      +||+++|++|. ....|. |.++.++|+.|+..
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            99999999885 367897 58999999999864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.61  E-value=5.6e-15  Score=112.42  Aligned_cols=98  Identities=49%  Similarity=0.948  Sum_probs=86.6

Q ss_pred             EeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      .++..++.+.+ .+.++++|.||++||++|+.+.+.|.++++.+  ...+.|+.+|++.+..++++|+|..+|++++|.+
T Consensus         2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            46677888865 44449999999999999999999999999999  4689999999999999999999999999999988


Q ss_pred             CCCCcccccCCCCHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      ++....+|.|..+.+++.+|+
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            755689999999999988774

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PHA02278 thioredoxin-like protein

Probab=99.60  E-value=5e-15  Score=111.72  Aligned_cols=92  Identities=16%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCccccccEEEEEcCCC
Q 015217          168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNVQGFPTILVFGADK  243 (411)
Q Consensus       168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~v~~~P~i~~~~~~~  243 (411)
                      .+|.+.+ ..+++++|.||++||++|+.+.|.+.+++..+..++.|+.+|++.+    +.++++|+|.++||+++|++|.
T Consensus         5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~   83 (103)
T PHA02278          5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ   83 (103)
T ss_pred             HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence            4566644 6778999999999999999999999999988766678899998875    6899999999999999999875


Q ss_pred             CCcccccCCCCHHHHHHH
Q 015217          244 DSPIPYEGARTAGAIESF  261 (411)
Q Consensus       244 ~~~~~y~g~~~~~~i~~f  261 (411)
                      . ..+..|..+.+.+.++
T Consensus        84 ~-v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         84 L-VKKYEDQVTPMQLQEL  100 (103)
T ss_pred             E-EEEEeCCCCHHHHHhh
Confidence            3 5677888888777665

>TIGR01068 thioredoxin thioredoxin

Probab=99.60  E-value=9.5e-15  Score=111.25  Aligned_cols=99  Identities=31%  Similarity=0.630  Sum_probs=87.3

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCC
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS  245 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~  245 (411)
                      +.+++.+.+.+..++++|+||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++..+|++++|+++.. 
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~-   80 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE-   80 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE-
Confidence            4566777766556799999999999999999999999999998889999999999999999999999999999976543 


Q ss_pred             cccccCCCCHHHHHHHHHHH
Q 015217          246 PIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ...+.|..+.+.+.+|+.++
T Consensus        81 ~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        81 VDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             eeeecCCCCHHHHHHHHHhh
Confidence            56778888999999999875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK10996 thioredoxin 2; Provisional

Probab=99.60  E-value=1.3e-14  Score=116.72  Aligned_cols=105  Identities=29%  Similarity=0.620  Sum_probs=93.2

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ...+..++..++.+. .+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.++.++++|+|.++|++++
T Consensus        34 ~~~~i~~~~~~~~~~-i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii  112 (139)
T PRK10996         34 DGEVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI  112 (139)
T ss_pred             CCCCEEcCHHHHHHH-HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence            445777888889885 4668899999999999999999999999999999899999999999999999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          239 FGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |++|. ....+.|..+.+.+.+|+.++
T Consensus       113 ~~~G~-~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        113 FKNGQ-VVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence            98654 466778999999999999875

>PTZ00051 thioredoxin; Provisional

Probab=99.60  E-value=6.1e-15  Score=111.64  Aligned_cols=87  Identities=31%  Similarity=0.620  Sum_probs=76.8

Q ss_pred             EEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           33 VQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        33 ~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      .+++. +++. .++..+++++|+||++||++|+.+.+.+.++++.+.+ +.++.+|+++...++++|++.++|++++|++
T Consensus         3 ~~i~~~~~~~-~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   80 (98)
T PTZ00051          3 HIVTSQAEFE-STLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKN   80 (98)
T ss_pred             EEecCHHHHH-HHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence            44544 4566 6778889999999999999999999999999998754 8999999999999999999999999999999


Q ss_pred             CCCCcccCCC
Q 015217          112 GKPPVDYQGA  121 (411)
Q Consensus       112 g~~~~~~~g~  121 (411)
                      |+.+.++.|.
T Consensus        81 g~~~~~~~G~   90 (98)
T PTZ00051         81 GSVVDTLLGA   90 (98)
T ss_pred             CeEEEEEeCC
Confidence            9888888885

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.59  E-value=9.1e-15  Score=109.79  Aligned_cols=77  Identities=19%  Similarity=0.294  Sum_probs=69.4

Q ss_pred             cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           38 NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        38 ~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      +++++.+.. ++++++|.|+++||++|+.+.|.++++++.+++.+.|+.||+++.+++++.|+|...|++++|.+|+.
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            456645543 58999999999999999999999999999998769999999999999999999999999999998875

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.58  E-value=2.1e-14  Score=108.08  Aligned_cols=98  Identities=13%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .....++..+|.+.+ ..+...+|.||++|  |++|+.+.|.+.++++.+.+++.|+.+|++.++.++.+|+|.++||++
T Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          10 HGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             cCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            457789999999865 77789999999997  999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHH
Q 015217          238 VFGADKDSPIPYEGARTAGAIE  259 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~  259 (411)
                      +|++|.. .....|..+.+++.
T Consensus        89 ~fkdGk~-v~~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRY-VGVLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEE-EEEEeCccCHHHHh
Confidence            9998753 55677877766653

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.57  E-value=3.3e-13  Score=114.86  Aligned_cols=173  Identities=28%  Similarity=0.391  Sum_probs=142.3

Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCC-CCcccCCC-CCcchhHHHHHHHHHHHHHHh
Q 015217           65 ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGA-RDVKPIAEFALQQIKALLKER  142 (411)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~-~~~~~~g~-~~~~~l~~~~~~~~~~~~~~~  142 (411)
                      .....+.++++.+.+.+.|+.+.   ++++++++++.. |++++|+++. ....|.|. .+.+.|.+|+...        
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~--------   74 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN--------   74 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh--------
Confidence            35568899999999889999888   777999999999 9999998854 36889998 8999999999877        


Q ss_pred             hcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch
Q 015217          143 LSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK  222 (411)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~  222 (411)
                                     .-+.+..++..++..+......+++++|..........+...+..+|+.+++++.|+.+|++..+
T Consensus        75 ---------------~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~  139 (184)
T PF13848_consen   75 ---------------SFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP  139 (184)
T ss_dssp             ---------------SSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH
T ss_pred             ---------------ccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH
Confidence                           46889999999999864333344777787665666788888999999999999999999999888


Q ss_pred             hHHhhCccc--cccEEEEEcCCCCC-cccccCCCCHHHHHHHHHH
Q 015217          223 SLMSKFNVQ--GFPTILVFGADKDS-PIPYEGARTAGAIESFALE  264 (411)
Q Consensus       223 ~l~~~~~v~--~~P~i~~~~~~~~~-~~~y~g~~~~~~i~~fi~~  264 (411)
                      .+++.+|+.  .+|+++++...... .+.+.|..+.++|.+|+..
T Consensus       140 ~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  140 RLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             HHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            999999998  89999999744432 2334788999999999863

...

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.57  E-value=3.1e-14  Score=108.88  Aligned_cols=93  Identities=42%  Similarity=0.937  Sum_probs=81.0

Q ss_pred             cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217          168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD  244 (411)
Q Consensus       168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~  244 (411)
                      ++|.+ + ..+++++|.||++||++|+.+.|.|.++++.+++   .+.++.+|++....++++|+|.++|++++|+++. 
T Consensus         7 ~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-   83 (104)
T cd03000           7 DSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-   83 (104)
T ss_pred             hhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence            45555 2 3467999999999999999999999999999954   4899999999999999999999999999997543 


Q ss_pred             CcccccCCCCHHHHHHHHHH
Q 015217          245 SPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       245 ~~~~y~g~~~~~~i~~fi~~  264 (411)
                       ...|.|..+.+.|.+|+++
T Consensus        84 -~~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          84 -AYNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             -ceeecCCCCHHHHHHHHHh
Confidence             6779999999999999876

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.56  E-value=2.7e-14  Score=108.78  Aligned_cols=94  Identities=20%  Similarity=0.239  Sum_probs=77.5

Q ss_pred             ccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHhhCccccccEEEEEcCC
Q 015217          167 SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILVFGAD  242 (411)
Q Consensus       167 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~l~~~~~v~~~P~i~~~~~~  242 (411)
                      .++|.+.+... +++++|.||++||++|+.+.|.+.++++.+ ..+.|+.||++.+.   .++++|+|.++|++++|++|
T Consensus         3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G   81 (103)
T cd02985           3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG   81 (103)
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence            45677766544 789999999999999999999999999999 67999999998764   79999999999999999766


Q ss_pred             CCCcccccCCCCHHHHHHHHH
Q 015217          243 KDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       243 ~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      . ...++.| ...+.+.+-+.
T Consensus        82 ~-~v~~~~G-~~~~~l~~~~~  100 (103)
T cd02985          82 E-KIHEEEG-IGPDELIGDVL  100 (103)
T ss_pred             e-EEEEEeC-CCHHHHHHHHH
Confidence            5 3677888 44566666554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.54  E-value=3.2e-14  Score=106.29  Aligned_cols=91  Identities=34%  Similarity=0.688  Sum_probs=80.7

Q ss_pred             chhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCccc
Q 015217           39 NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY  118 (411)
Q Consensus        39 ~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~  118 (411)
                      +|+ ..+..+++++|.||++||++|+.+.+.+.++++. .+++.++.+|+++++++++++++.++|++++|.+|+.+..+
T Consensus         2 ~~~-~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~   79 (93)
T cd02947           2 EFE-ELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV   79 (93)
T ss_pred             chH-HHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence            455 4455569999999999999999999999999988 66799999999999999999999999999999999878888


Q ss_pred             CCCCCcchhHHHH
Q 015217          119 QGARDVKPIAEFA  131 (411)
Q Consensus       119 ~g~~~~~~l~~~~  131 (411)
                      .|..+.+.+.+++
T Consensus        80 ~g~~~~~~l~~~i   92 (93)
T cd02947          80 VGADPKEELEEFL   92 (93)
T ss_pred             ecCCCHHHHHHHh
Confidence            8888877777765

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PLN02309 5'-adenylylsulfate reductase

Probab=99.54  E-value=5.6e-14  Score=132.68  Aligned_cols=107  Identities=28%  Similarity=0.667  Sum_probs=95.2

Q ss_pred             CCCCcEEeCccchHHHHh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC-CchhHHh-hCcccc
Q 015217          158 DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD-SEKSLMS-KFNVQG  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~-~~~~l~~-~~~v~~  232 (411)
                      ....++.++.++|.+.+.  +.+++++|.||++||++|+.+.+.|.+++..+.+. +.|+.+|++ .+..+++ +|+|.+
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence            556889999999998763  46779999999999999999999999999999874 999999999 7788886 699999


Q ss_pred             ccEEEEEcCCCCCcccccC-CCCHHHHHHHHHH
Q 015217          233 FPTILVFGADKDSPIPYEG-ARTAGAIESFALE  264 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi~~  264 (411)
                      +||+++|+++...++.|.| .++.++|..|+..
T Consensus       423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence            9999999888767889985 6999999999875

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.54  E-value=4.2e-14  Score=109.36  Aligned_cols=90  Identities=17%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC--CcccCCCC
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGAR  122 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~--~~~~~g~~  122 (411)
                      +..+..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|.++|++++|++|+.  ..+|.|..
T Consensus        19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~   97 (113)
T cd02975          19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP   97 (113)
T ss_pred             hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence            345667999999999999999999999999886 679999999999999999999999999999987643  23788988


Q ss_pred             CcchhHHHHHHHH
Q 015217          123 DVKPIAEFALQQI  135 (411)
Q Consensus       123 ~~~~l~~~~~~~~  135 (411)
                      +...+.+++...+
T Consensus        98 ~~~el~~~i~~i~  110 (113)
T cd02975          98 AGYEFASLIEDIV  110 (113)
T ss_pred             chHHHHHHHHHHH
Confidence            8889999988764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.54  E-value=5.8e-14  Score=132.59  Aligned_cols=107  Identities=29%  Similarity=0.651  Sum_probs=93.4

Q ss_pred             CCCCcEEeCccchHHHHh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCch-hH-HhhCcccc
Q 015217          158 DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK-SL-MSKFNVQG  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~-~l-~~~~~v~~  232 (411)
                      .+..|+.|+..+|.+.+.  +.+++++|.||++||++|+.+.|.|.++|+.+.+. +.|+.||++.+. .+ +++|+|.+
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence            566899999999999763  46779999999999999999999999999999875 899999998654 34 47899999


Q ss_pred             ccEEEEEcCCCCCccccc-CCCCHHHHHHHHHH
Q 015217          233 FPTILVFGADKDSPIPYE-GARTAGAIESFALE  264 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~-g~~~~~~i~~fi~~  264 (411)
                      +|++++|+++...++.|. |.++.+.|..|+..
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            999999998876688897 58999999999864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.53  E-value=1.4e-13  Score=106.65  Aligned_cols=98  Identities=37%  Similarity=0.807  Sum_probs=81.2

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCC--chhHHhhCccccccE
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDS--EKSLMSKFNVQGFPT  235 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~--~~~l~~~~~v~~~P~  235 (411)
                      ++.+++..+|.+.+.+.+++++|.||++||++|+.+.+.|.+++..+++   .+.|+.+||+.  +..++++|++..+|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            4788999999998877778999999999999999999999999998864   48999999864  568999999999999


Q ss_pred             EEEEcCCCCC---cccccCC-CCHHHH
Q 015217          236 ILVFGADKDS---PIPYEGA-RTAGAI  258 (411)
Q Consensus       236 i~~~~~~~~~---~~~y~g~-~~~~~i  258 (411)
                      +++|+++..+   ...|.|. ...+++
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            9999776532   2456665 444444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.53  E-value=1.1e-13  Score=105.30  Aligned_cols=95  Identities=24%  Similarity=0.473  Sum_probs=79.0

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD  244 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~  244 (411)
                      +.+++.+. .+.+++++|.||++||++|+.+.+.+.+++..+.+ .+.|+.+|++ +.+++++|+|+.+|++++|++|..
T Consensus         6 ~~~~~~~~-i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~   83 (102)
T cd02948           6 NQEEWEEL-LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL   83 (102)
T ss_pred             CHHHHHHH-HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence            45667775 46788999999999999999999999999999986 4889999988 778999999999999999987653


Q ss_pred             CcccccCCCCHHHHHHHHHH
Q 015217          245 SPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       245 ~~~~y~g~~~~~~i~~fi~~  264 (411)
                       ..+..| .+.+.+.++|.+
T Consensus        84 -~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          84 -VAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             -EEEEec-CChHHHHHHHhh
Confidence             445555 477888887753

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.52  E-value=1.2e-13  Score=111.59  Aligned_cols=92  Identities=23%  Similarity=0.495  Sum_probs=80.2

Q ss_pred             CCCcEEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCcccc----
Q 015217          159 SNESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQG----  232 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~----  232 (411)
                      ...+..++.++|.+.+... .++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.||++.+++++++|+|..    
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v  106 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS  106 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence            4678899999999876544 46999999999999999999999999999985 59999999999999999999988    


Q ss_pred             --ccEEEEEcCCCCCcccccC
Q 015217          233 --FPTILVFGADKDSPIPYEG  251 (411)
Q Consensus       233 --~P~i~~~~~~~~~~~~y~g  251 (411)
                        +||+++|++|.. ..++.|
T Consensus       107 ~~~PT~ilf~~Gk~-v~r~~G  126 (152)
T cd02962         107 KQLPTIILFQGGKE-VARRPY  126 (152)
T ss_pred             CCCCEEEEEECCEE-EEEEec
Confidence              999999987653 555665

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.52  E-value=5.1e-14  Score=110.05  Aligned_cols=99  Identities=14%  Similarity=0.190  Sum_probs=78.6

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----------hHHHhc
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----------SLAQEY   98 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----------~~~~~~   98 (411)
                      +.+..++.+++. ..+.+++.++|+|+++||++|+.+.|.+.++++.  .++.++.+|.+.+.           ++.++|
T Consensus         6 ~~~~~it~~~~~-~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         6 KGLEVTTVVRAL-EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ccceecCHHHHH-HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            345678888888 5567788999999999999999999999999998  34567777777432           566776


Q ss_pred             C----CCcccEEEEEeCCCCCcccCC-CCCcchhHHHH
Q 015217           99 G----IRGFPTIKVFVPGKPPVDYQG-ARDVKPIAEFA  131 (411)
Q Consensus        99 ~----i~~~P~~~~~~~g~~~~~~~g-~~~~~~l~~~~  131 (411)
                      +    +.++|++++|++|+.+.+..| ..+.++|.+++
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence            5    456999999999998888878 44577777665

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.52  E-value=1.2e-13  Score=105.74  Aligned_cols=93  Identities=27%  Similarity=0.394  Sum_probs=80.1

Q ss_pred             chHHHHhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----chhHHhhCccccccEEEEEcC
Q 015217          169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----EKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       169 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      .+.+. .+.+++++|.||++||++|+.+.+.+   .+++..+++++.++.+|++.    ...++++|++.++|++++|+.
T Consensus         3 ~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~   81 (104)
T cd02953           3 ALAQA-LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP   81 (104)
T ss_pred             HHHHH-HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            45553 56778999999999999999999988   67888888789999999876    578999999999999999986


Q ss_pred             -CCCCcccccCCCCHHHHHHHH
Q 015217          242 -DKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       242 -~~~~~~~y~g~~~~~~i~~fi  262 (411)
                       +++...++.|..+.+++.+++
T Consensus        82 ~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          82 GGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCcccccccCHHHHHHHh
Confidence             566688899999999988875

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.52  E-value=7.3e-14  Score=110.72  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=80.0

Q ss_pred             HHhcCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEecccc-------------HhHHHhcCCCcccE
Q 015217           43 KVLNAN-GVVLVEFYAPWCGHCQALTPIWE---KAATVLKGVATVAALDANEH-------------QSLAQEYGIRGFPT  105 (411)
Q Consensus        43 ~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i~~~P~  105 (411)
                      .+.+++ ++++|.||++||++|+.+.+.+.   .+.+.+.+++.++.+|.+.+             ..++.+|++.++|+
T Consensus         8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt   87 (125)
T cd02951           8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT   87 (125)
T ss_pred             HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence            456778 99999999999999999999884   56666666788899998864             68999999999999


Q ss_pred             EEEEeCC--CCCcccCCCCCcchhHHHHHHHHHH
Q 015217          106 IKVFVPG--KPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus       106 ~~~~~~g--~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                      ++++.++  +.+.++.|..+.+.+..++...+..
T Consensus        88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          88 VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             EEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            9999864  6678899999988888888776543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.52  E-value=7e-14  Score=116.42  Aligned_cols=90  Identities=18%  Similarity=0.277  Sum_probs=77.5

Q ss_pred             CCCcEEeCc-cchhHHHhcCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQLTP-NNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l~~-~~f~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      -..+.+++. ++|...+...+  .+++|+||++||++|+.+.|.|.+++..+. .+.|++||+++. .++.+|+|..+||
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT  138 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA  138 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence            456778888 89996655443  499999999999999999999999999986 589999999987 8999999999999


Q ss_pred             EEEEeCCCCCcccCC
Q 015217          106 IKVFVPGKPPVDYQG  120 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g  120 (411)
                      +++|++|+.+.++.|
T Consensus       139 lllyk~G~~v~~~vG  153 (175)
T cd02987         139 LLVYKGGELIGNFVR  153 (175)
T ss_pred             EEEEECCEEEEEEec
Confidence            999999987555544

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.50  E-value=1.1e-13  Score=107.37  Aligned_cols=89  Identities=24%  Similarity=0.363  Sum_probs=77.2

Q ss_pred             CCcEEeCccchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ..+..+++.+|.+.+.+..  .+++|.||++||++|+.+.+.+++++..+. .+.|+.||++.+ .++++|+|..+|+++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            4578889999998876553  799999999999999999999999999986 489999999888 999999999999999


Q ss_pred             EEcCCCCCcccccC
Q 015217          238 VFGADKDSPIPYEG  251 (411)
Q Consensus       238 ~~~~~~~~~~~y~g  251 (411)
                      +|++|.. ..++.|
T Consensus        82 ~f~~G~~-v~~~~G   94 (113)
T cd02957          82 VYKNGEL-IDNIVG   94 (113)
T ss_pred             EEECCEE-EEEEec
Confidence            9998753 445555

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1e-13  Score=104.56  Aligned_cols=86  Identities=29%  Similarity=0.590  Sum_probs=73.5

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCH
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA  255 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~  255 (411)
                      ..+++++|.||++||++|+.+.|.|.++|.+|.+ +.|..||+++..+++++++|...||+++|++|.+ ...+.|.. .
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~-~~~~vGa~-~   95 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE-VDEVVGAN-K   95 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEE-EEEEecCC-H
Confidence            3468999999999999999999999999999998 9999999999999999999999999999987764 56666653 3


Q ss_pred             HHHHHHHHH
Q 015217          256 GAIESFALE  264 (411)
Q Consensus       256 ~~i~~fi~~  264 (411)
                      ..+.+.+..
T Consensus        96 ~~l~~~i~~  104 (106)
T KOG0907|consen   96 AELEKKIAK  104 (106)
T ss_pred             HHHHHHHHh
Confidence            366555543

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.49  E-value=4.4e-13  Score=108.00  Aligned_cols=101  Identities=17%  Similarity=0.354  Sum_probs=84.4

Q ss_pred             cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEEcCCCCC
Q 015217          168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDS  245 (411)
Q Consensus       168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~~~~~~  245 (411)
                      .++.+. ...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.|+.+..  ..++++|+|.++|++++|..+++.
T Consensus        11 ~~~~~a-~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~   89 (142)
T cd02950          11 TPPEVA-LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE   89 (142)
T ss_pred             CCHHHH-HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence            455553 46678999999999999999999999999999988888888877654  478999999999999999755555


Q ss_pred             cccccCCCCHHHHHHHHHHHhhhc
Q 015217          246 PIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      ...+.|..+.+.+..++.+.+...
T Consensus        90 v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          90 EGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC
Confidence            667889888899999998877544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.48  E-value=3.2e-13  Score=101.77  Aligned_cols=92  Identities=23%  Similarity=0.470  Sum_probs=82.2

Q ss_pred             hHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccc
Q 015217          170 FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY  249 (411)
Q Consensus       170 ~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y  249 (411)
                      +...+.+.+++++++|+++||+.|+.+.+.+.++++.+.+++.+..+|++.++++++++++.++|++++|+++ +...++
T Consensus         5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~   83 (97)
T cd02949           5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVKEI   83 (97)
T ss_pred             HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEEEE
Confidence            4555677888999999999999999999999999999988899999999999999999999999999999865 457788


Q ss_pred             cCCCCHHHHHHHH
Q 015217          250 EGARTAGAIESFA  262 (411)
Q Consensus       250 ~g~~~~~~i~~fi  262 (411)
                      .|..+.+++.+|+
T Consensus        84 ~g~~~~~~~~~~l   96 (97)
T cd02949          84 SGVKMKSEYREFI   96 (97)
T ss_pred             eCCccHHHHHHhh
Confidence            8988888888775

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.47  E-value=9.4e-13  Score=101.71  Aligned_cols=100  Identities=22%  Similarity=0.316  Sum_probs=81.0

Q ss_pred             CCcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          160 NESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       160 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ..+..+++ .+|.+.+ .++.+++|.||++||++|+.+.+.+.++++.+.+ +.|+.||.+....++++|+|..+|++++
T Consensus         4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~   81 (113)
T cd02989           4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVIL   81 (113)
T ss_pred             CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence            34677777 7777754 5567999999999999999999999999999864 8999999999999999999999999999


Q ss_pred             EcCCCCCcccccC--------CCCHHHHHHHH
Q 015217          239 FGADKDSPIPYEG--------ARTAGAIESFA  262 (411)
Q Consensus       239 ~~~~~~~~~~y~g--------~~~~~~i~~fi  262 (411)
                      |++|.. ..++.|        +++.+++..|+
T Consensus        82 fk~G~~-v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          82 FKNGKT-VDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EECCEE-EEEEECccccCCCCCCCHHHHHHHh
Confidence            987753 223333        34556666554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.46  E-value=5.8e-13  Score=105.19  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=78.2

Q ss_pred             ccchHHHHh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE-EEcCCCC
Q 015217          167 SSNFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL-VFGADKD  244 (411)
Q Consensus       167 ~~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~-~~~~~~~  244 (411)
                      ..++.+.+. ..+++++|.||++||++|+.+.|.+.++|+.+.+.+.|+.||+++.++++++|+|++.|+++ +|+++..
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~   90 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHI   90 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeE
Confidence            466777665 34679999999999999999999999999999988999999999999999999999777666 7777653


Q ss_pred             CcccccC--------CCCHHHHHHHHHHH
Q 015217          245 SPIPYEG--------ARTAGAIESFALEQ  265 (411)
Q Consensus       245 ~~~~y~g--------~~~~~~i~~fi~~~  265 (411)
                      ..-+..|        ..+.+++.+-+...
T Consensus        91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         91 MIDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             EEEEecccccccccccCCHHHHHHHHHHH
Confidence            3444456        24445555544443

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.45  E-value=5e-13  Score=102.13  Aligned_cols=87  Identities=20%  Similarity=0.298  Sum_probs=76.7

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCC--cccEEEEEeC--CCCCcccCCCCC
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR--GFPTIKVFVP--GKPPVDYQGARD  123 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~--g~~~~~~~g~~~  123 (411)
                      ++++++.|+++||++|+.+.+.+.++++.+++++.|+.+|+++.+.+++.+|+.  ++|+++++..  |+......|..+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence            789999999999999999999999999999999999999999999999999999  9999999988  544333344458


Q ss_pred             cchhHHHHHHH
Q 015217          124 VKPIAEFALQQ  134 (411)
Q Consensus       124 ~~~l~~~~~~~  134 (411)
                      .+.|.+|+.+.
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            88898888753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.44  E-value=8.9e-13  Score=99.51  Aligned_cols=93  Identities=19%  Similarity=0.419  Sum_probs=76.3

Q ss_pred             cchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCc
Q 015217          168 SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP  246 (411)
Q Consensus       168 ~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~  246 (411)
                      +++.+.+... +++++|.||++||++|+.+.+.+.+++..+...+.++.+|++..+.++++|++..+|++++|++|. ..
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~   81 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT-IV   81 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-EE
Confidence            4566655444 589999999999999999999999999998778999999999999999999999999999998654 34


Q ss_pred             ccccCCCCHHHHHHHH
Q 015217          247 IPYEGARTAGAIESFA  262 (411)
Q Consensus       247 ~~y~g~~~~~~i~~fi  262 (411)
                      .++.| .+.+.|.+.|
T Consensus        82 ~~~~g-~~~~~l~~~~   96 (97)
T cd02984          82 DRVSG-ADPKELAKKV   96 (97)
T ss_pred             EEEeC-CCHHHHHHhh
Confidence            45555 4556666544

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.7e-13  Score=112.51  Aligned_cols=98  Identities=28%  Similarity=0.532  Sum_probs=83.1

Q ss_pred             CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           36 TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        36 ~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++++|+..+. ...+.++|.||++||++|++..|.++.++.+|++ ..|.+||.++.+..+..+||...||+++|.+|..
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k   86 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK   86 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence            4467886653 3557999999999999999999999999999976 6899999999999999999999999999999988


Q ss_pred             CcccCCCCCcchhHHHHHHHH
Q 015217          115 PVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       115 ~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +.++.|. ++..|...+.+++
T Consensus        87 id~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   87 IDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             eeeecCC-CHHHHHHHHHHHh
Confidence            8888875 5555666665554

>PTZ00051 thioredoxin; Provisional

Probab=99.43  E-value=1.1e-12  Score=99.20  Aligned_cols=93  Identities=30%  Similarity=0.550  Sum_probs=76.0

Q ss_pred             cEEeCcc-chHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          162 SIELNSS-NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       162 v~~l~~~-~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      +.++++. ++.+ +.+.++.+++.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+..++++|++.++|++++|+
T Consensus         2 v~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   79 (98)
T PTZ00051          2 VHIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFK   79 (98)
T ss_pred             eEEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence            4455554 4444 56778899999999999999999999999999876 4899999999999999999999999999998


Q ss_pred             CCCCCcccccCCCCHHHH
Q 015217          241 ADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i  258 (411)
                      +|.. ...+.|. ..++|
T Consensus        80 ~g~~-~~~~~G~-~~~~~   95 (98)
T PTZ00051         80 NGSV-VDTLLGA-NDEAL   95 (98)
T ss_pred             CCeE-EEEEeCC-CHHHh
Confidence            6653 5667774 44444

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.43  E-value=9.6e-13  Score=98.92  Aligned_cols=76  Identities=16%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             chHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217          169 NFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD  244 (411)
Q Consensus       169 ~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~  244 (411)
                      ++.+.+.. .+++++|.|+++||++|+.+.|.+.++|..+.+.+.|+.||.++.+++++.|+|...|+.++|++|..
T Consensus         4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            45555544 47899999999999999999999999999998779999999999999999999999999999987763

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.41  E-value=1.2e-12  Score=95.47  Aligned_cols=80  Identities=26%  Similarity=0.433  Sum_probs=70.9

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHH
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF  130 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~  130 (411)
                      .+..||++||++|+.+.+.++++++.+++.+.+..||++++++++++||+.++|++++  +|+  .++.|..+.+.+.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~   77 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA   77 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence            4779999999999999999999999988789999999999999999999999999875  554  478898888888888


Q ss_pred             HHHH
Q 015217          131 ALQQ  134 (411)
Q Consensus       131 ~~~~  134 (411)
                      +.+.
T Consensus        78 l~~~   81 (82)
T TIGR00411        78 IKKR   81 (82)
T ss_pred             HHhh
Confidence            7653

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.41  E-value=1e-12  Score=110.83  Aligned_cols=89  Identities=18%  Similarity=0.270  Sum_probs=76.4

Q ss_pred             CCCcEEeCccchhHHHhcCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           29 SSPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      -..+.+++.++|...+...+  .+++|+||++||++|+.+.|.|.+++..+. .+.|++||+++.   +..|++.++||+
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl  156 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI  156 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence            46688899999997665543  589999999999999999999999999986 589999999853   589999999999


Q ss_pred             EEEeCCCCCcccCCC
Q 015217          107 KVFVPGKPPVDYQGA  121 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~  121 (411)
                      ++|++|+.+.++.|.
T Consensus       157 liyk~G~~v~~ivG~  171 (192)
T cd02988         157 LVYRNGDIVKQFIGL  171 (192)
T ss_pred             EEEECCEEEEEEeCc
Confidence            999999876666653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.39  E-value=6.6e-12  Score=104.58  Aligned_cols=103  Identities=20%  Similarity=0.295  Sum_probs=84.4

Q ss_pred             CCCcEEeCc-cchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIELNS-SNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      -..+..+++ .+|.+.+.+..  .+++|.||++||++|+.+.+.+.++|..+. .+.|+.||++.. .++.+|+|..+||
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT  138 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA  138 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence            466888988 99998776544  389999999999999999999999999986 599999999876 8999999999999


Q ss_pred             EEEEcCCCCCcccccC-------CCCHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEG-------ARTAGAIESFALE  264 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~  264 (411)
                      +++|++|.. ...+.|       .++.+.|..++.+
T Consensus       139 lllyk~G~~-v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         139 LLVYKGGEL-IGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             EEEEECCEE-EEEEechHHhcCCCCCHHHHHHHHHh
Confidence            999998653 222222       4667777777654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.38  E-value=4.1e-12  Score=98.24  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=76.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-CcccccCCCCH
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGARTA  255 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~~~  255 (411)
                      .....+|+|+++||++|+.+.+.+.+++..+ +++.|..+|.+.++.++++|+|.++|++++|++++. ..+.+.|..+.
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~   99 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG   99 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence            4556888899999999999999999999887 679999999999999999999999999999986543 23478898888


Q ss_pred             HHHHHHHHHHh
Q 015217          256 GAIESFALEQL  266 (411)
Q Consensus       256 ~~i~~fi~~~~  266 (411)
                      .++.+|+..-+
T Consensus       100 ~el~~~i~~i~  110 (113)
T cd02975         100 YEFASLIEDIV  110 (113)
T ss_pred             HHHHHHHHHHH
Confidence            89888887653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.37  E-value=1.4e-11  Score=104.42  Aligned_cols=91  Identities=16%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----------------------hHHHhcCCC
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----------------------SLAQEYGIR  101 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----------------------~~~~~~~i~  101 (411)
                      ..++++++|.||++||++|++..|.+.++.+.   .+.++.|+.++++                       .+++.||+.
T Consensus        65 ~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~  141 (185)
T PRK15412         65 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY  141 (185)
T ss_pred             hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence            34689999999999999999999999888652   4666777654322                       355678999


Q ss_pred             cccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217          102 GFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKAL  138 (411)
Q Consensus       102 ~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~  138 (411)
                      ++|+.++++ +|+...++.|..+.+.+.+++...++..
T Consensus       142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~  179 (185)
T PRK15412        142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY  179 (185)
T ss_pred             cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence            999877775 6766788899999999888888877554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.37  E-value=4.4e-11  Score=118.78  Aligned_cols=187  Identities=17%  Similarity=0.225  Sum_probs=151.4

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe-CCCC-CcccCCCCCc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV-PGKP-PVDYQGARDV  124 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~~-~~~~~g~~~~  124 (411)
                      .+++.++.|+.+.|..|.++...+++++. +.++|.+...|...+.+++++|++...|++.++. +|.. -++|.|-...
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G  443 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG  443 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence            45567889999999999999999999885 4678888889999999999999999999999985 4433 5899999999


Q ss_pred             chhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCC-eEEEEEeCCCChhhhhhhHHHHHH
Q 015217          125 KPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKA  203 (411)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~-~~lv~f~~~~c~~c~~~~~~~~~~  203 (411)
                      .++..|+...+.                     ...+-..|+.+.... +..-++ ..+-.|.+++|++|......+.++
T Consensus       444 ~Ef~s~i~~i~~---------------------~~~~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~  501 (555)
T TIGR03143       444 HELNSFILALYN---------------------AAGPGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRI  501 (555)
T ss_pred             HhHHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHH
Confidence            999999988763                     223344565554444 444444 456677899999999999999999


Q ss_pred             HHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       204 a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +.... ++..-.++.+..++++++|+|.++|++++   ++  ...+.|..+.+++..++
T Consensus       502 ~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i---~~--~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       502 ASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV---DD--QQVYFGKKTIEEMLELI  554 (555)
T ss_pred             HHhCC-CceEEEEECcccHHHHHhCCceecCEEEE---CC--EEEEeeCCCHHHHHHhh
Confidence            99865 68888899999999999999999999998   33  35577988888888775

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.36  E-value=2.3e-12  Score=99.09  Aligned_cols=77  Identities=16%  Similarity=0.380  Sum_probs=66.0

Q ss_pred             cchhHHHhc-CCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-------cHhHHHhcCCC-
Q 015217           38 NNFKSKVLN-ANGVVLVEFYA-------PWCGHCQALTPIWEKAATVLKGVATVAALDANE-------HQSLAQEYGIR-  101 (411)
Q Consensus        38 ~~f~~~~~~-~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-------~~~~~~~~~i~-  101 (411)
                      ++|.+.+.. ++++++|.|||       +||++|+.+.|.+++++..+++++.|+.||+++       +.++..+++|. 
T Consensus        10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~   89 (119)
T cd02952          10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT   89 (119)
T ss_pred             HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence            556644433 36899999999       999999999999999999998789999999976       45899999998 


Q ss_pred             cccEEEEEeCCCC
Q 015217          102 GFPTIKVFVPGKP  114 (411)
Q Consensus       102 ~~P~~~~~~~g~~  114 (411)
                      ++||+++|..|+.
T Consensus        90 ~iPT~~~~~~~~~  102 (119)
T cd02952          90 GVPTLLRWKTPQR  102 (119)
T ss_pred             CCCEEEEEcCCce
Confidence            9999999977654

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.35  E-value=6.9e-12  Score=95.75  Aligned_cols=88  Identities=20%  Similarity=0.293  Sum_probs=76.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccc--cccEEEEEcCCCCCcccccCC-CC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ--GFPTILVFGADKDSPIPYEGA-RT  254 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~--~~P~i~~~~~~~~~~~~y~g~-~~  254 (411)
                      ..++++.|+++||++|+.+.+.+.++|+++++++.|+.+|++..+.+++.||+.  ++|++++++.+....+.+.+. .+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence            578999999999999999999999999999999999999999999999999999  999999998743224445544 58


Q ss_pred             HHHHHHHHHHH
Q 015217          255 AGAIESFALEQ  265 (411)
Q Consensus       255 ~~~i~~fi~~~  265 (411)
                      .++|.+|+.+.
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.34  E-value=8.3e-12  Score=119.67  Aligned_cols=90  Identities=21%  Similarity=0.277  Sum_probs=74.0

Q ss_pred             HhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEE----------------------------eccccHhH
Q 015217           44 VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAAL----------------------------DANEHQSL   94 (411)
Q Consensus        44 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~v----------------------------d~~~~~~~   94 (411)
                      .+.++++++|.|||+||++|+...|.++++++.++. .+.++.|                            +++.+..+
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l  131 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL  131 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence            345889999999999999999999999999998873 4544433                            34556689


Q ss_pred             HHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHH
Q 015217           95 AQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        95 ~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      ++.|+|.++|+++++ ++|+.+.++.|..+.+.|..+++.
T Consensus       132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            999999999999777 467767889999999988888873

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.34  E-value=1.7e-11  Score=99.37  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc------------HhHH-Hhc---CCCcccEEEE
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH------------QSLA-QEY---GIRGFPTIKV  108 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~------------~~~~-~~~---~i~~~P~~~~  108 (411)
                      ...++..+|+||++||++|++..|.++++++.++  +.+..|+.+..            .... ..+   ++.++|+.++
T Consensus        47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            3456778999999999999999999999999874  44545555432            2333 345   7899999999


Q ss_pred             EeC-CCC-CcccCCCCCcchhHHHHHH
Q 015217          109 FVP-GKP-PVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       109 ~~~-g~~-~~~~~g~~~~~~l~~~~~~  133 (411)
                      ++. |+. ...+.|..+.+.+.+.+.+
T Consensus       125 ID~~G~~i~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       125 VNVNTRKAYPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             EeCCCCEEEEEeecccCHHHHHHHHHH
Confidence            975 443 3367899998887776654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.34  E-value=8.8e-12  Score=92.90  Aligned_cols=91  Identities=37%  Similarity=0.671  Sum_probs=78.2

Q ss_pred             chHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCccc
Q 015217          169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP  248 (411)
Q Consensus       169 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~  248 (411)
                      ++.+.+ ...++++|.||++||+.|+.+.+.+.++++. .+.+.|+.+|++.+..++++|++.++|++++|..+. ....
T Consensus         2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~   78 (93)
T cd02947           2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR   78 (93)
T ss_pred             chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence            345543 3448899999999999999999999999998 667999999999999999999999999999998765 3677


Q ss_pred             ccCCCCHHHHHHHH
Q 015217          249 YEGARTAGAIESFA  262 (411)
Q Consensus       249 y~g~~~~~~i~~fi  262 (411)
                      +.|..+.+.|.+++
T Consensus        79 ~~g~~~~~~l~~~i   92 (93)
T cd02947          79 VVGADPKEELEEFL   92 (93)
T ss_pred             EecCCCHHHHHHHh
Confidence            78888878888876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.33  E-value=2e-10  Score=101.20  Aligned_cols=197  Identities=22%  Similarity=0.321  Sum_probs=136.2

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhh------hH-HHHHHHHHhcC-CeEEEEEeCCCchhHHhhCcc
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL------AP-EWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNV  230 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~------~~-~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v  230 (411)
                      ...+..|+.++|.+.+ ......+|+|+.+--.. +..      .. .++-+|+.+.. .+.||.||...+..+++++|+
T Consensus        33 kDRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   33 KDRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             S--CEEE-TTTHHHHH-HH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             ccceEEcchhHHHHHH-HhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            3569999999999964 55667778888764211 222      23 33444555544 499999999999999999999


Q ss_pred             ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC---C-ccEEE-------eHHH
Q 015217          231 QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCG---S-AAICF-------YLEM  299 (411)
Q Consensus       231 ~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~---~-~~~~~-------~~~~  299 (411)
                      ...++|.+|+++.  .+.|.|.++++.++.|+...+.     .+|..+++...+..+..   . +-+.+       ..+.
T Consensus       111 ~E~~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~e-----dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~  183 (383)
T PF01216_consen  111 EEEGSIYVFKDGE--VIEYDGERSADTLVEFLLDLLE-----DPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKE  183 (383)
T ss_dssp             -STTEEEEEETTE--EEEE-S--SHHHHHHHHHHHHS-----SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHH
T ss_pred             cccCcEEEEECCc--EEEecCccCHHHHHHHHHHhcc-----cchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHH
Confidence            9999999999876  8999999999999999999985     55888888777654433   2 22332       4589


Q ss_pred             HHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCC-CCCChhHHHHHHHHHccC
Q 015217          300 LLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLK-SAFELEHIVEFVKEAGRG  371 (411)
Q Consensus       300 ~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~-~~~~~~~i~~fi~~~~~g  371 (411)
                      |..+|.+|... +.|+.+-.   +.++++++++   .--+-+|.|--+...... .+.+.++|.+||++...-
T Consensus       184 FeeAAe~F~p~-IkFfAtfd---~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rp  249 (383)
T PF01216_consen  184 FEEAAEHFQPY-IKFFATFD---KKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRP  249 (383)
T ss_dssp             HHHHHHHCTTT-SEEEEE-S---HHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-
T ss_pred             HHHHHHhhcCc-eeEEEEec---chhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchh
Confidence            99999999988 88888876   9999999996   666788887766665444 458999999999998433

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.1e-11  Score=115.93  Aligned_cols=209  Identities=22%  Similarity=0.356  Sum_probs=130.0

Q ss_pred             CCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCC--CchhHHhhCccc
Q 015217          157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCD--SEKSLMSKFNVQ  231 (411)
Q Consensus       157 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~--~~~~l~~~~~v~  231 (411)
                      +...++..|+..+|...+..+++.++|.||++||++|+.+.|.|+++|+....   -+.++.|||.  .+..+|++|+|+
T Consensus        36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~  115 (606)
T KOG1731|consen   36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS  115 (606)
T ss_pred             CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence            34589999999999999888888999999999999999999999999999876   4899999995  466899999999


Q ss_pred             cccEEEEEcCCCCC---cccccCCCCHHHHHHHHHHHhhh------cCCCCCceEeCChhH---HHHhcCC-cc---EEE
Q 015217          232 GFPTILVFGADKDS---PIPYEGARTAGAIESFALEQLET------NVAPPEVTELTSQDV---MEEKCGS-AA---ICF  295 (411)
Q Consensus       232 ~~P~i~~~~~~~~~---~~~y~g~~~~~~i~~fi~~~~~~------~~~~~~v~~l~~~~~---~~~~~~~-~~---~~~  295 (411)
                      .+|++.+|..+...   ...+.|.....++.+.+.+.+..      ++.-|.+..+.+.+.   +....+. ..   +++
T Consensus       116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~  195 (606)
T KOG1731|consen  116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVF  195 (606)
T ss_pred             CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEE
Confidence            99999999655321   23445555566666666554432      223343333444333   3322222 11   222


Q ss_pred             ----eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHc
Q 015217          296 ----YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAG  369 (411)
Q Consensus       296 ----~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~  369 (411)
                          ..--+..+-.....+.+....+-+   ......+++..+..|..++++ ++.....+....+-+...+-|.+++
T Consensus       196 e~~~s~lg~~~~l~~l~~~~v~vr~~~d---~q~~~~~~l~~~~~~~~llfr-nG~~q~l~~~~~s~~~y~~~I~~~l  269 (606)
T KOG1731|consen  196 ETEPSDLGWANLLNDLPSKQVGVRARLD---TQNFPLFGLKPDNFPLALLFR-NGEQQPLWPSSSSRSAYVKKIDDLL  269 (606)
T ss_pred             ecCCcccHHHHHHhhccCCCcceEEEec---chhccccccCCCCchhhhhhc-CCcccccccccccHHHHHHHHHHHh
Confidence                112333333333222233333322   222223445555688888886 3333334444455545555555554

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.32  E-value=1.5e-11  Score=97.39  Aligned_cols=92  Identities=15%  Similarity=0.263  Sum_probs=76.8

Q ss_pred             hcCC-CeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCeEEEEEeCCCc-------------hhHHhhCccccccEEE
Q 015217          175 LKSK-DLWIVEFFAPWCGHCKKLAPEWK---KAANNLKGKVKLGHVDCDSE-------------KSLMSKFNVQGFPTIL  237 (411)
Q Consensus       175 ~~~~-~~~lv~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~f~~v~~~~~-------------~~l~~~~~v~~~P~i~  237 (411)
                      .+.+ ++++|.||++||++|+.+.+.+.   .+...+.+++.+..+|.+.+             ..++.+|++.++|+++
T Consensus        10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~   89 (125)
T cd02951          10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI   89 (125)
T ss_pred             HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence            4556 89999999999999999999884   67777777788888988754             6899999999999999


Q ss_pred             EEcCC-CCCcccccCCCCHHHHHHHHHHHh
Q 015217          238 VFGAD-KDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       238 ~~~~~-~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +|.++ ++...++.|..+.+.+..++....
T Consensus        90 ~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~  119 (125)
T cd02951          90 FLDPEGGKEIARLPGYLPPDEFLAYLEYVQ  119 (125)
T ss_pred             EEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence            99876 566778889888888888877654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.31  E-value=9e-12  Score=96.74  Aligned_cols=92  Identities=17%  Similarity=0.364  Sum_probs=67.8

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-hHHHhcCCCc--ccEEEEEe-CCCCCc--
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-SLAQEYGIRG--FPTIKVFV-PGKPPV--  116 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~--~P~~~~~~-~g~~~~--  116 (411)
                      .+..++++++|.||++||++|+.+.|.+.+..........|+.+|.+.+. .....|++.+  +|+++++. +|+.+.  
T Consensus        14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~   93 (117)
T cd02959          14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEI   93 (117)
T ss_pred             HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhh
Confidence            55678999999999999999999999998876654444456666666554 4567889886  99999996 676644  


Q ss_pred             -ccCCCCCcchhHHHHHHH
Q 015217          117 -DYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       117 -~~~g~~~~~~l~~~~~~~  134 (411)
                       ...|..+.+.+.+.+...
T Consensus        94 ~~~~~~~~~~~f~~~~~~~  112 (117)
T cd02959          94 INKKGNPNYKYFYSSAAQV  112 (117)
T ss_pred             ccCCCCccccccCCCHHHH
Confidence             456666666655555443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.31  E-value=1.4e-11  Score=96.35  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=76.1

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----------hHHhhC
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----------SLMSKF  228 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----------~l~~~~  228 (411)
                      ..+..++..++.+. ..+++..+|+|+++|||+|+.+.|.+.++++.  .+..++.||.+.++           ++.++|
T Consensus         6 ~~~~~it~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         6 KGLEVTTVVRALEA-LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ccceecCHHHHHHH-HHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            45677888888885 46677789999999999999999999999998  34567777766432           455666


Q ss_pred             cc----ccccEEEEEcCCCCCcccccC-CCCHHHHHHHH
Q 015217          229 NV----QGFPTILVFGADKDSPIPYEG-ARTAGAIESFA  262 (411)
Q Consensus       229 ~v----~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi  262 (411)
                      ++    .++|++++|++|.. ..+..| ..+.++|.+|+
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHh
Confidence            64    45999999998764 455667 45688888875

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.31  E-value=4.2e-11  Score=100.77  Aligned_cols=103  Identities=17%  Similarity=0.315  Sum_probs=81.8

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc------------------
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE------------------   90 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~------------------   90 (411)
                      ..+..++++.+. ...-++++++|.||++||++|+...+.+.++++.+.+ .+.++.|+++.                  
T Consensus        44 ~~~~~~~g~~~~-l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~  122 (173)
T PRK03147         44 FVLTDLEGKKIE-LKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPV  122 (173)
T ss_pred             cEeecCCCCEEe-HHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence            344556666665 3334678999999999999999999999999999876 48888888753                  


Q ss_pred             ----cHhHHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHHH
Q 015217           91 ----HQSLAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        91 ----~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                          ...++++||+.++|+++++.. |+....+.|..+.+.+.+++.+
T Consensus       123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence                357889999999999988864 5545578899998888888764

>PTZ00062 glutaredoxin; Provisional

Probab=99.28  E-value=1.2e-10  Score=98.50  Aligned_cols=158  Identities=11%  Similarity=0.119  Sum_probs=105.9

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCC
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS  245 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~  245 (411)
                      +.+++.+.+..+.+..+++|+++||++|+.+.+.+.++++.+. .+.|+.||.+        |+|..+|++++|+++.. 
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~-   74 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQL-   74 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEE-
Confidence            3456666554334778999999999999999999999999996 5999999865        99999999999998764 


Q ss_pred             cccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEEeH---------HHHHHHHHHhhcCccEEEE
Q 015217          246 PIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYL---------EMLLSVAEKFKRGHYSFVW  316 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~f~~  316 (411)
                      .-++.| .+...+..++.++......    .  .....++.+...++++++.         ..-+++-.-+++..+.|..
T Consensus        75 i~r~~G-~~~~~~~~~~~~~~~~~~~----~--~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~  147 (204)
T PTZ00062         75 INSLEG-CNTSTLVSFIRGWAQKGSS----E--DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYET  147 (204)
T ss_pred             EeeeeC-CCHHHHHHHHHHHcCCCCH----H--HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEE
Confidence            556666 4678999999877642211    1  1123455556666655532         2333333334443466666


Q ss_pred             ecCCCchhhHHHh----CCCCCCCCeEEEe
Q 015217          317 AAAGKQPDLENRV----GVGGYGYPALVAL  342 (411)
Q Consensus       317 i~~~~~~~~~~~f----~~~~~~~P~l~v~  342 (411)
                      +|-.+.++..+.+    |-.  .+|.++|=
T Consensus       148 ~DI~~d~~~~~~l~~~sg~~--TvPqVfI~  175 (204)
T PTZ00062        148 YNIFEDPDLREELKVYSNWP--TYPQLYVN  175 (204)
T ss_pred             EEcCCCHHHHHHHHHHhCCC--CCCeEEEC
Confidence            6655555443333    332  47888873

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.25  E-value=5.9e-11  Score=86.42  Aligned_cols=80  Identities=15%  Similarity=0.281  Sum_probs=70.6

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHH
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIES  260 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~  260 (411)
                      .+..|+++||++|+.+.+.+.+++..++..+.+..||.+.+++++++||+..+|++++  ++.   .++.|..+.+.+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l~~   76 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEELVE   76 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHHHH
Confidence            4778999999999999999999999998889999999999999999999999999986  332   47889888999988


Q ss_pred             HHHHH
Q 015217          261 FALEQ  265 (411)
Q Consensus       261 fi~~~  265 (411)
                      ++.+.
T Consensus        77 ~l~~~   81 (82)
T TIGR00411        77 AIKKR   81 (82)
T ss_pred             HHHhh
Confidence            87654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.24  E-value=1.2e-10  Score=98.24  Aligned_cols=102  Identities=16%  Similarity=0.264  Sum_probs=82.1

Q ss_pred             CCCCcEEeCccchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      .-..+..++..+|...+....  .+++|.||++||++|+.+.+.|.++|..+. .+.|+.|+.+.   ...+|++..+||
T Consensus        80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~---~~~~~~i~~lPT  155 (192)
T cd02988          80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ---CIPNYPDKNLPT  155 (192)
T ss_pred             CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH---hHhhCCCCCCCE
Confidence            357789999999998776553  489999999999999999999999999986 59999999764   368999999999


Q ss_pred             EEEEcCCCCCcccccC-------CCCHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEG-------ARTAGAIESFALE  264 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~  264 (411)
                      +++|++|.. ...+.|       .++.++|..++.+
T Consensus       156 lliyk~G~~-v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         156 ILVYRNGDI-VKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEEECCEE-EEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            999998753 333433       4566777766654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.23  E-value=1.2e-11  Score=96.09  Aligned_cols=86  Identities=27%  Similarity=0.427  Sum_probs=64.7

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhCCCeEEEEEecccc--------------------HhHHHhcCCCc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEK---AATVLKGVATVAALDANEH--------------------QSLAQEYGIRG  102 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~~~i~~~~vd~~~~--------------------~~~~~~~~i~~  102 (411)
                      .++++.+++||++||++|+.+.+.+.+   +...+++++.++.++++..                    .++.+.+||++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            468899999999999999999999885   4445555677888877643                    35899999999


Q ss_pred             ccEEEEEe-CCCCCcccCCCCCcchhHHHH
Q 015217          103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~  131 (411)
                      +|+++++. +|+.+.++.|..+++.|.+++
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999996 577677889999999887764

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.20  E-value=1.1e-10  Score=90.94  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=72.2

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEeccccHhHHHh--------cCCCcc
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDANEHQSLAQE--------YGIRGF  103 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~~~~~~~~~--------~~i~~~  103 (411)
                      .+++.+. .+.+++++++|.|+++||+.|+.+.+. +  .+++..+..++.++.+|.++.+++++.        ||+.++
T Consensus         3 ~~~eal~-~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           3 WGEEAFE-KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             CCHHHHH-HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            3455566 677889999999999999999999874 3  467777777889999999988777653        589999


Q ss_pred             cEEEEEeC-CCCCcccCCC-----CCcchhHHHHHHH
Q 015217          104 PTIKVFVP-GKPPVDYQGA-----RDVKPIAEFALQQ  134 (411)
Q Consensus       104 P~~~~~~~-g~~~~~~~g~-----~~~~~l~~~~~~~  134 (411)
                      |+++++.. |+.+....+.     .+...+.+++.+.
T Consensus        82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence            99999965 5544333222     3334566666543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.17  E-value=3.6e-10  Score=111.77  Aligned_cols=102  Identities=20%  Similarity=0.377  Sum_probs=79.7

Q ss_pred             cEEeC-ccchhHHH---hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecccc----HhHHHhcCC
Q 015217           32 VVQLT-PNNFKSKV---LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEH----QSLAQEYGI  100 (411)
Q Consensus        32 ~~~l~-~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i  100 (411)
                      .+.++ .+++++.+   ..++++++|+||++||++|+.+++..   .++.+.++ ++.++++|++++    .+++++|++
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v  532 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV  532 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence            44443 34555333   24578999999999999999998875   66777775 478999999853    689999999


Q ss_pred             CcccEEEEEe-CCCC--CcccCCCCCcchhHHHHHHH
Q 015217          101 RGFPTIKVFV-PGKP--PVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       101 ~~~P~~~~~~-~g~~--~~~~~g~~~~~~l~~~~~~~  134 (411)
                      .++|++++|+ +|+.  ..++.|..+.+++.+++++.
T Consensus       533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            9999999997 5665  36788999999998888753

>PHA02125 thioredoxin-like protein

Probab=99.17  E-value=8.9e-11  Score=83.53  Aligned_cols=61  Identities=25%  Similarity=0.513  Sum_probs=51.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA  121 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~  121 (411)
                      +++||++||++|+.+.|.++++.      +.++.||+++.++++++|+|.++|+++   .|+.+.++.|.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~   62 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV   62 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence            78999999999999999997653      467899999999999999999999986   45545567674

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.16  E-value=2.8e-10  Score=87.65  Aligned_cols=77  Identities=18%  Similarity=0.378  Sum_probs=65.1

Q ss_pred             ccchHHHHhcC-CCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------chhHHhhCccc
Q 015217          167 SSNFDELVLKS-KDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-------EKSLMSKFNVQ  231 (411)
Q Consensus       167 ~~~~~~~~~~~-~~~~lv~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-------~~~l~~~~~v~  231 (411)
                      ..+|.+.+... +++++|.|++       +||++|+.+.|.+++++..+.+++.|+.||.+.       +..++.+++|.
T Consensus         9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~   88 (119)
T cd02952           9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT   88 (119)
T ss_pred             HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc
Confidence            34566655443 5799999999       999999999999999999998789999999875       45899999998


Q ss_pred             -cccEEEEEcCCC
Q 015217          232 -GFPTILVFGADK  243 (411)
Q Consensus       232 -~~P~i~~~~~~~  243 (411)
                       ++||+++|+.+.
T Consensus        89 ~~iPT~~~~~~~~  101 (119)
T cd02952          89 TGVPTLLRWKTPQ  101 (119)
T ss_pred             cCCCEEEEEcCCc
Confidence             999999996543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.5e-10  Score=97.17  Aligned_cols=99  Identities=25%  Similarity=0.445  Sum_probs=82.2

Q ss_pred             CccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217          166 NSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD  244 (411)
Q Consensus       166 ~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~  244 (411)
                      ++.+|...+... .+.++|.|++.||++|+.+.|.|..++.+|. ...|..||++.....+..+||+..||+++|+++..
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k   86 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK   86 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence            446677665444 3599999999999999999999999999996 48999999999999999999999999999998764


Q ss_pred             CcccccCCCCHHHHHHHHHHHhh
Q 015217          245 SPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       245 ~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                       .-.+.| .+...|.+-+.++..
T Consensus        87 -id~~qG-Ad~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   87 -IDQIQG-ADASGLEEKVAKYAS  107 (288)
T ss_pred             -eeeecC-CCHHHHHHHHHHHhc
Confidence             566777 456677777777654

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.16  E-value=1.2e-10  Score=82.98  Aligned_cols=72  Identities=22%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCC-CcchhHHH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR-DVKPIAEF  130 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~-~~~~l~~~  130 (411)
                      -|.||++||++|+.+.|.++++++.+...+.+..+|   +.+.+.+||+.++|++++  +|+.+  +.|.. +.+.+.++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~   74 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence            378999999999999999999999998888888887   344578899999999888  67643  66643 33555544

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.11  E-value=7.8e-10  Score=92.72  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=68.5

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec-----------------------cccHhHHHhcCCCc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA-----------------------NEHQSLAQEYGIRG  102 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~~  102 (411)
                      .++++++|+||++||++|+++.|.+.++.+.   ++.+..|+.                       +.+..+.+.|++.+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            4689999999999999999999999888753   344544443                       33446778899999


Q ss_pred             ccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+.+++. +|+...++.|..+.+.+.+++.+.+
T Consensus       138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            99777774 6766777889999999999888765

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.4e-09  Score=84.59  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=74.4

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccc----------------cHhHHHhcCCCcc
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----------------HQSLAQEYGIRGF  103 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~----------------~~~~~~~~~i~~~  103 (411)
                      .+...++..+++|-+++|..|.++...+   .++.+.+.+++.++.++...                ..+|++.|+++++
T Consensus        37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst  116 (182)
T COG2143          37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST  116 (182)
T ss_pred             hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence            5566889999999999999999999977   55777778888998888752                2489999999999


Q ss_pred             cEEEEEeC-CCCCcccCCCCCcchhHHHHH
Q 015217          104 PTIKVFVP-GKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       104 P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      |++++|+. |+.+..-+|...++.+..-+.
T Consensus       117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         117 PTFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             ceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            99999976 455778899999997765554

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.08  E-value=6e-10  Score=88.50  Aligned_cols=79  Identities=15%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-----------------------ccccHhHHHhcCCCcc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-----------------------ANEHQSLAQEYGIRGF  103 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-----------------------~~~~~~~~~~~~i~~~  103 (411)
                      ++++++|+||++||++|+...|.+.++.+.+.  +.++.|+                       ++....+++.|++.++
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            58899999999999999999999999987752  5555554                       3455678889999999


Q ss_pred             cEEEEEe-CCCCCcccCCCCCcchh
Q 015217          104 PTIKVFV-PGKPPVDYQGARDVKPI  127 (411)
Q Consensus       104 P~~~~~~-~g~~~~~~~g~~~~~~l  127 (411)
                      |+.+++. +|+...++.|..+.+.+
T Consensus       102 P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 PETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CeEEEECCCceEEEEEeccCChHhc
Confidence            9777775 67667788888876543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.08  E-value=6.3e-10  Score=89.08  Aligned_cols=68  Identities=21%  Similarity=0.353  Sum_probs=55.0

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEecccc-------------------------Hh
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--------VATVAALDANEH-------------------------QS   93 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~i~~~~vd~~~~-------------------------~~   93 (411)
                      ++++++|+|||+||++|+++.|.+.++.+.+++        ++.++.|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            689999999999999999999999998876543        477777776532                         15


Q ss_pred             HHHhcCCCcccEEEEEeCCCC
Q 015217           94 LAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        94 ~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++++|++.++|+++++...+.
T Consensus       104 l~~~y~v~~iPt~vlId~~G~  124 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGD  124 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCc
Confidence            788899999999999975433

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.08  E-value=8.5e-10  Score=82.73  Aligned_cols=66  Identities=27%  Similarity=0.554  Sum_probs=55.1

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccccH-------------------------hHHHhcCC
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEHQ-------------------------SLAQEYGI  100 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~~-------------------------~~~~~~~i  100 (411)
                      +++++|+||++||++|++..|.+.++.+.++  +++.++.|.++++.                         .+.+.|++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            6899999999999999999999999999999  67888888887542                         67888999


Q ss_pred             CcccEEEEEeCCC
Q 015217          101 RGFPTIKVFVPGK  113 (411)
Q Consensus       101 ~~~P~~~~~~~g~  113 (411)
                      .++|+++++...+
T Consensus        81 ~~iP~~~lld~~G   93 (95)
T PF13905_consen   81 NGIPTLVLLDPDG   93 (95)
T ss_dssp             TSSSEEEEEETTS
T ss_pred             CcCCEEEEECCCC
Confidence            9999999997643

...

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.05  E-value=1.1e-09  Score=87.43  Aligned_cols=68  Identities=24%  Similarity=0.414  Sum_probs=55.0

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecccc------------------------HhHHHhcC
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH------------------------QSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~------------------------~~~~~~~~   99 (411)
                      ++++++|+||++||++|+...|.+.++.+.+.+   ++.++.|+.+..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            678999999999999999999999999888763   455666655532                        35788999


Q ss_pred             CCcccEEEEEeCCCC
Q 015217          100 IRGFPTIKVFVPGKP  114 (411)
Q Consensus       100 i~~~P~~~~~~~g~~  114 (411)
                      +.++|++++++.++.
T Consensus        97 v~~~P~~~lid~~G~  111 (131)
T cd03009          97 IEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCEEEEECCCCC
Confidence            999999999974433

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.05  E-value=3.8e-09  Score=87.15  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-------------HhHHHhcCC--CcccEEEEEeCCCCC-
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-------------QSLAQEYGI--RGFPTIKVFVPGKPP-  115 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i--~~~P~~~~~~~g~~~-  115 (411)
                      +|.||++||++|+++.|.+.++++.++  +.+..|+.+..             ..+...||+  .++|+.++++..+.+ 
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            888999999999999999999999974  55555555422             236678885  699999999654443 


Q ss_pred             -cccCCCCCcchhHHHHHHHHH
Q 015217          116 -VDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       116 -~~~~g~~~~~~l~~~~~~~~~  136 (411)
                       ..+.|..+.+.+.+.+.+.+.
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh
Confidence             368999999988888877663

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.03  E-value=8.2e-10  Score=85.75  Aligned_cols=84  Identities=19%  Similarity=0.358  Sum_probs=59.3

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-hHHhhCcccc--ccEEEEEcCCCCCcc---
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-SLMSKFNVQG--FPTILVFGADKDSPI---  247 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-~l~~~~~v~~--~P~i~~~~~~~~~~~---  247 (411)
                      ....+++++|.|+++||++|+.+.+.+.+.+........|..++.+.++ ...+.|++.+  +|++++|..+++...   
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~   94 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII   94 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence            4556789999999999999999999999987755444455556655443 4567888876  999999975554332   


Q ss_pred             cccCCCCHHH
Q 015217          248 PYEGARTAGA  257 (411)
Q Consensus       248 ~y~g~~~~~~  257 (411)
                      ...|..+.+.
T Consensus        95 ~~~~~~~~~~  104 (117)
T cd02959          95 NKKGNPNYKY  104 (117)
T ss_pred             cCCCCccccc
Confidence            3444444433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02740 TraF-like TraF-like protein

Probab=99.02  E-value=1.2e-09  Score=97.66  Aligned_cols=86  Identities=19%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-----------cHhHHHhcCCCcccEEEEEeC-CCC
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-----------HQSLAQEYGIRGFPTIKVFVP-GKP  114 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-----------~~~~~~~~~i~~~P~~~~~~~-g~~  114 (411)
                      .++++||+||++||++|+.+.|.+..+++.+.  +.+..|+.+.           +..+++++||.++|+++++++ |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            57899999999999999999999999999885  4454555543           357899999999999999987 444


Q ss_pred             Cc-ccCCCCCcchhHHHHHHH
Q 015217          115 PV-DYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       115 ~~-~~~g~~~~~~l~~~~~~~  134 (411)
                      +. ...|..+.+.|.+.+...
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~  263 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLA  263 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHH
Confidence            33 456888988888887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.02  E-value=1.7e-09  Score=85.32  Aligned_cols=94  Identities=23%  Similarity=0.361  Sum_probs=69.6

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe---------------------cccc
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD---------------------ANEH   91 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd---------------------~~~~   91 (411)
                      ..++++.+. ....++++++|.||++||++|+.+.|.+.++++.+. .+.+ .+|                     ++.+
T Consensus         6 ~~~~g~~~~-~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (123)
T cd03011           6 TTLDGEQFD-LESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSV-ALRSGDDGAVARFMQKKGYGFPVINDPD   82 (123)
T ss_pred             ecCCCCEee-HHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEE-EccCCCHHHHHHHHHHcCCCccEEECCC
Confidence            345555555 333456899999999999999999999999887742 1222 111                     2345


Q ss_pred             HhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHH
Q 015217           92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAE  129 (411)
Q Consensus        92 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~  129 (411)
                      .+++++|++.++|+++++.+++...++.|..+.+.|.+
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            67999999999999999987666667888888877654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.01  E-value=2.7e-09  Score=82.84  Aligned_cols=93  Identities=17%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeC--CCCC
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVP--GKPP  115 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~--g~~~  115 (411)
                      ....++++++|+|+++||+.|+.+... |  ..+.+.+..+..+..+|.+  +..+++..|++.++|+++++..  |+.+
T Consensus        12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l   91 (114)
T cd02958          12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL   91 (114)
T ss_pred             HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence            456679999999999999999999874 4  5677777777888888887  4568999999999999999965  6668


Q ss_pred             cccCCCCCcchhHHHHHHHH
Q 015217          116 VDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       116 ~~~~g~~~~~~l~~~~~~~~  135 (411)
                      .+..|..+++.+...+.+.+
T Consensus        92 ~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          92 KVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             EEEcCCCCHHHHHHHHHHHH
Confidence            89999999999888887654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.00  E-value=1.8e-09  Score=86.36  Aligned_cols=68  Identities=25%  Similarity=0.469  Sum_probs=55.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecccc-------------------------HhHHHhc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH-------------------------QSLAQEY   98 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~-------------------------~~~~~~~   98 (411)
                      ++++++|.||++||++|+...|.+.++.+.+++   ++.+..|+++..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            589999999999999999999999999988875   466666766543                         2456779


Q ss_pred             CCCcccEEEEEeCCCC
Q 015217           99 GIRGFPTIKVFVPGKP  114 (411)
Q Consensus        99 ~i~~~P~~~~~~~g~~  114 (411)
                      ++.++|++++++.++.
T Consensus        96 ~v~~iPt~~lid~~G~  111 (132)
T cd02964          96 KVEGIPTLVVLKPDGD  111 (132)
T ss_pred             CCCCCCEEEEECCCCC
Confidence            9999999999975443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.99  E-value=2.3e-09  Score=83.21  Aligned_cols=85  Identities=31%  Similarity=0.499  Sum_probs=67.9

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEecccc----------------------
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEH----------------------   91 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~~----------------------   91 (411)
                      ++.+.+. .....+++++|.||++||++|+...+.+.++.+.+. ..+.++.|+++..                      
T Consensus         7 ~~g~~~~-~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (116)
T cd02966           7 LDGKPVS-LSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP   85 (116)
T ss_pred             CCCCEee-hHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence            4444455 233348899999999999999999999999999986 3689999999875                      


Q ss_pred             -HhHHHhcCCCcccEEEEEeC-CCCCcccCC
Q 015217           92 -QSLAQEYGIRGFPTIKVFVP-GKPPVDYQG  120 (411)
Q Consensus        92 -~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g  120 (411)
                       ..+++.|++.++|+++++.+ |+.+.+|.|
T Consensus        86 ~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          86 DGELAKAYGVRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence             78899999999999999964 544555544

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.98  E-value=2.1e-09  Score=74.82  Aligned_cols=57  Identities=26%  Similarity=0.445  Sum_probs=51.6

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      -++.|+++||++|+.+.+.+++++... +++.+..+|.++++++++++|+.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            478999999999999999999997753 469999999999999999999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.98  E-value=6.5e-09  Score=86.34  Aligned_cols=80  Identities=14%  Similarity=0.125  Sum_probs=61.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEE------EEEeccc-----------------------------c
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV------AALDANE-----------------------------H   91 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~------~~vd~~~-----------------------------~   91 (411)
                      .+++++|.|||.||++|+..+|.+..+...   ++.+      ..||.++                             .
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~  134 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK  134 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence            599999999999999999999999999643   2333      5555543                             2


Q ss_pred             HhHHHhcCCCcccEE-EEEe-CCCCCcccCCCCCcchhHH
Q 015217           92 QSLAQEYGIRGFPTI-KVFV-PGKPPVDYQGARDVKPIAE  129 (411)
Q Consensus        92 ~~~~~~~~i~~~P~~-~~~~-~g~~~~~~~g~~~~~~l~~  129 (411)
                      ..+...||+.+.|+. ++++ +|+....+.|..+.+.+.+
T Consensus       135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence            245678899999877 5664 4666778899998887766

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.6e-09  Score=87.75  Aligned_cols=99  Identities=17%  Similarity=0.359  Sum_probs=80.9

Q ss_pred             cccccCCCCCcEEe-CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhc
Q 015217           22 SDALYGSSSPVVQL-TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEY   98 (411)
Q Consensus        22 ~~~~~~~~~~~~~l-~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~   98 (411)
                      ....+.++..+.-+ +.+.++.+.. ++...|+|.|++.|.+.|+++.|.+.++..++.. .+.||+||..+-++.+++|
T Consensus       116 ~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf  195 (265)
T KOG0914|consen  116 PEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF  195 (265)
T ss_pred             CccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe
Confidence            34466777778888 4455553332 2445899999999999999999999999999985 6999999999999999999


Q ss_pred             CCC------cccEEEEEeCCCCCcccCC
Q 015217           99 GIR------GFPTIKVFVPGKPPVDYQG  120 (411)
Q Consensus        99 ~i~------~~P~~~~~~~g~~~~~~~g  120 (411)
                      +|.      ..||+++|.+|+++.|.+.
T Consensus       196 ris~s~~srQLPT~ilFq~gkE~~RrP~  223 (265)
T KOG0914|consen  196 RISLSPGSRQLPTYILFQKGKEVSRRPD  223 (265)
T ss_pred             eeccCcccccCCeEEEEccchhhhcCcc
Confidence            885      7799999999988766653

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.97  E-value=4.4e-09  Score=81.82  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...++..+++ ......+..+++|...-  ++.+....-.+.++++.+.+ ++.+++||++.+++++.+|||.++||+++
T Consensus        19 ~~~~~~~~~~-~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~   97 (132)
T PRK11509         19 WTPVSESRLD-DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_pred             CCccccccHH-HHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            3455666777 45566666777666553  77888888899999999985 59999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |++|+.+.+..|..+.+.+.+++.+.+
T Consensus        98 FkdGk~v~~i~G~~~k~~l~~~I~~~L  124 (132)
T PRK11509         98 FTGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_pred             EECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence            999999889999999999999998876

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.94  E-value=1.6e-09  Score=83.96  Aligned_cols=87  Identities=28%  Similarity=0.440  Sum_probs=63.3

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcCCeEEEEEeCCCc--------------------hhHHhhCcccc
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKK---AANNLKGKVKLGHVDCDSE--------------------KSLMSKFNVQG  232 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~---~a~~~~~~~~f~~v~~~~~--------------------~~l~~~~~v~~  232 (411)
                      .++++.+++|+++||++|+.+.+.+..   +...++.++.+..++++..                    ..+++++||.+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            356789999999999999999998874   5555655677887776643                    35889999999


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +|+++++..+++....+.|..+.+++.+++
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            999999975555456788999998887764

...

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.89  E-value=7.8e-09  Score=73.59  Aligned_cols=72  Identities=17%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCHHHHHHH
Q 015217          183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIESF  261 (411)
Q Consensus       183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~f  261 (411)
                      |.||++||++|+.+.+.++++++++..++.+..+|   +...+.+||+.++|++++  +|.  .. +.|. .+.+.+.++
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~--~~-~~G~~~~~~~l~~~   74 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE--LV-IMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE--EE-EEeccCCHHHHHHH
Confidence            67899999999999999999999998888888887   344578899999999999  333  22 6774 344666665


Q ss_pred             H
Q 015217          262 A  262 (411)
Q Consensus       262 i  262 (411)
                      +
T Consensus        75 l   75 (76)
T TIGR00412        75 L   75 (76)
T ss_pred             h
Confidence            4

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.88  E-value=8.1e-09  Score=75.71  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=62.7

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcch
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP  126 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  126 (411)
                      .++.-+..|+++||++|....+.+.+++..+. ++.+..+|.+..++++++|||.++|++++  +|+.  .+.|..+.+.
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~--~~~G~~~~~e   85 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL--FGFGRMTLEE   85 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE--EEeCCCCHHH
Confidence            56678999999999999999999999998764 68999999999999999999999999865  6653  3456554443

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.87  E-value=1.5e-07  Score=93.09  Aligned_cols=178  Identities=13%  Similarity=0.134  Sum_probs=133.1

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcch
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP  126 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~  126 (411)
                      .+++-+.++...|..|.++...+++++..- ++|.+...+..           ...|++.+..+|+. -++|.|-....+
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E   85 (517)
T PRK15317         18 ERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE   85 (517)
T ss_pred             CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence            444444444448999999999999888864 56665432211           34799989876644 589999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 015217          127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAAN  205 (411)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~  205 (411)
                      +..|+...+.                     ...+-..|++..... +.. +.+..+-.|.++.|++|......+.+++.
T Consensus        86 f~s~i~~i~~---------------------~~~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~  143 (517)
T PRK15317         86 FTSLVLALLQ---------------------VGGHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAV  143 (517)
T ss_pred             HHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHH
Confidence            9999987763                     233445565554444 333 34567889999999999999999999998


Q ss_pred             HhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       206 ~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      .. .++.+-.+|....++++++|++.++|++++   ++  ...+.|..+.+++.+.+.+.
T Consensus       144 ~~-~~i~~~~id~~~~~~~~~~~~v~~VP~~~i---~~--~~~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        144 LN-PNITHTMIDGALFQDEVEARNIMAVPTVFL---NG--EEFGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             hC-CCceEEEEEchhCHhHHHhcCCcccCEEEE---CC--cEEEecCCCHHHHHHHHhcc
Confidence            64 479999999999999999999999999986   22  34578888888888777653

>TIGR02740 TraF-like TraF-like protein

Probab=98.86  E-value=1.8e-08  Score=90.07  Aligned_cols=87  Identities=15%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------chhHHhhCccccccEEEEEcC-CCCC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-----------EKSLMSKFNVQGFPTILVFGA-DKDS  245 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-----------~~~l~~~~~v~~~P~i~~~~~-~~~~  245 (411)
                      +++.+|.||++||++|+...|.+.++++.+.  +.+..|+.+.           +..++++|||..+|+++++.. ++..
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v  243 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF  243 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence            5689999999999999999999999999986  4454455443           356899999999999999987 3432


Q ss_pred             cccccCCCCHHHHHHHHHHHh
Q 015217          246 PIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      .....|..+.+.|.+.+....
T Consensus       244 ~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       244 TPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             EEEEeCCCCHHHHHHHHHHHh
Confidence            334568889999988887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=1.8e-08  Score=106.63  Aligned_cols=92  Identities=22%  Similarity=0.353  Sum_probs=76.4

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEec---------------------------cccHhHHHhc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDA---------------------------NEHQSLAQEY   98 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~---------------------------~~~~~~~~~~   98 (411)
                      ++++++|+|||+||++|+...|.++++.+.++++ +.++.|.+                           +.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            6899999999999999999999999999999864 66666632                           2234678899


Q ss_pred             CCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217           99 GIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKAL  138 (411)
Q Consensus        99 ~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~~~  138 (411)
                      ++.++|+++++ ++|+.+.++.|....+.+.+++...+.-.
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~  539 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY  539 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence            99999999999 46777778899888888888888776543

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.85  E-value=1.5e-08  Score=96.56  Aligned_cols=100  Identities=21%  Similarity=0.380  Sum_probs=77.2

Q ss_pred             EEeCcc-chhHHHhcCCC--eEEEEEECCCChhhhhhhHHHH-H--HHHHhCCCeEEEEEecccc----HhHHHhcCCCc
Q 015217           33 VQLTPN-NFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWE-K--AATVLKGVATVAALDANEH----QSLAQEYGIRG  102 (411)
Q Consensus        33 ~~l~~~-~f~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~-~--~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~  102 (411)
                      +.++.. +.+ ....+++  +++++|||+||-.||.+++..- +  +...+. ++...++|.+++    .++.++||+-+
T Consensus       457 q~~s~~~~L~-~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G  534 (569)
T COG4232         457 QPISPLAELD-QALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFG  534 (569)
T ss_pred             hccCCHHHHH-HHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence            566665 556 4444455  9999999999999999998553 3  333333 578889999854    47889999999


Q ss_pred             ccEEEEEe-CCCCCcccCCCCCcchhHHHHHHH
Q 015217          103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      .|++++|+ +|++.....|..+.+.+.+++++.
T Consensus       535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            99999998 566666689999999999998764

>smart00594 UAS UAS domain

Probab=98.85  E-value=1.9e-08  Score=78.95  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeCC
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVPG  112 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~g  112 (411)
                      ++..+....++|+++|+|+++||..|+.+....   .++.+.++.++.+..+|.+  +..+++.+|++.++|+++++...
T Consensus        17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~   96 (122)
T smart00594       17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR   96 (122)
T ss_pred             HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence            333334566788999999999999999998854   5577777777888777776  45679999999999999999653


Q ss_pred             C------CCcccCCCCCcchhHHHH
Q 015217          113 K------PPVDYQGARDVKPIAEFA  131 (411)
Q Consensus       113 ~------~~~~~~g~~~~~~l~~~~  131 (411)
                      .      .+.+..|..+++.++.++
T Consensus        97 ~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       97 TGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             CCceeEEEeccccCCCCHHHHHHhh
Confidence            2      266889999999888765

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.85  E-value=1.2e-08  Score=78.22  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             eHHHHHHHHHH---hhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCC-CccccCCCCCChhHHHHHHHHHccC
Q 015217          296 YLEMLLSVAEK---FKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKK-GVYTPLKSAFELEHIVEFVKEAGRG  371 (411)
Q Consensus       296 ~~~~~~~~a~~---~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~-~~~~~~~~~~~~~~i~~fi~~~~~g  371 (411)
                      +...++.+|++   |+++ +.|+++|.++....++.||++..+.|++++.+..+ .+|..+.+.++.++|++|+.++++|
T Consensus        32 ~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G  110 (111)
T cd03072          32 LKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG  110 (111)
T ss_pred             HHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence            45789999999   9998 99999999888789999999987899999998754 4775577899999999999999998


Q ss_pred             C
Q 015217          372 G  372 (411)
Q Consensus       372 ~  372 (411)
                      +
T Consensus       111 k  111 (111)
T cd03072         111 K  111 (111)
T ss_pred             C
Confidence            5

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PHA02125 thioredoxin-like protein

Probab=98.85  E-value=1.3e-08  Score=72.41  Aligned_cols=50  Identities=30%  Similarity=0.588  Sum_probs=45.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ++.|+++||++|+.+.+.+.+++      +.++.||.+...+++++|+|.++|+++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence            78999999999999999997653      468889999999999999999999987

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.84  E-value=3.4e-08  Score=77.01  Aligned_cols=71  Identities=13%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCCCchhHHh--------hCccccccEEEEEcCC
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMS--------KFNVQGFPTILVFGAD  242 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~l~~--------~~~v~~~P~i~~~~~~  242 (411)
                      ..+.+++++|.|+++||+.|+.+.+ .|  .+++..+..++.++.+|.+..+++++        .||+.++|+++++..+
T Consensus        11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~   90 (124)
T cd02955          11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD   90 (124)
T ss_pred             HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            4677889999999999999999976 44  46777777789999999988777665        3588999999999876


Q ss_pred             CC
Q 015217          243 KD  244 (411)
Q Consensus       243 ~~  244 (411)
                      ++
T Consensus        91 G~   92 (124)
T cd02955          91 LK   92 (124)
T ss_pred             CC
Confidence            64

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.83  E-value=1.5e-08  Score=70.36  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      .++.|+++||++|+.+.+.+.+++... .++.+..+|.+.++++++++|+.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            478899999999999999999998764 469999999999999999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.83  E-value=1.7e-09  Score=90.30  Aligned_cols=107  Identities=30%  Similarity=0.480  Sum_probs=93.8

Q ss_pred             cccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCc
Q 015217           24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRG  102 (411)
Q Consensus        24 ~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~  102 (411)
                      .....+..+..++.++... .  ..+-|+++|++|||+.|+...++|...+.--.+ .+.++.||...++.+.-+|-+..
T Consensus        18 ~~~~r~s~~~~~~eenw~~-~--l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta   94 (248)
T KOG0913|consen   18 VTPRRSSKLTRIDEENWKE-L--LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA   94 (248)
T ss_pred             cCccccceeEEecccchhh-h--hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe
Confidence            3444556888999999994 3  367899999999999999999999999987666 68999999999999999999999


Q ss_pred             ccEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          103 FPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       103 ~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      .|+++-..+|. ..+|.|.++..+++.|+...
T Consensus        95 LptIYHvkDGe-FrrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen   95 LPTIYHVKDGE-FRRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             cceEEEeeccc-cccccCcccchhHHHHHHhh
Confidence            99999989985 69999999999999998754

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.82  E-value=9.7e-09  Score=79.83  Aligned_cols=60  Identities=25%  Similarity=0.455  Sum_probs=45.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE---eccccHhHHHhcCCCcccEE
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL---DANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v---d~~~~~~~~~~~~i~~~P~~  106 (411)
                      ++++++|.||++||++|+...|.+.++.+.+.+++.++.+   +.++..++++++++.++|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence            4789999999999999999999999999888766665555   22233456666666666654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.82  E-value=5.5e-08  Score=75.71  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=87.1

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCC--CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAP--WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~--~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ....++..++..++ ......+++|-.+  .++.+....-++.++++.|.+ ++.|+.||.+.++.++.+|||.++||++
T Consensus        18 g~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl   96 (132)
T PRK11509         18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_pred             CCCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            35566677888864 5566666666643  467778888899999999985 5999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      +|++|.. .-...|..+.+.+.++|.+.+..
T Consensus        97 ~FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         97 VFTGGNY-RGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             EEECCEE-EEEEeCcCCHHHHHHHHHHHhcC
Confidence            9998764 56778989999999999988753

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.81  E-value=3.5e-08  Score=97.77  Aligned_cols=104  Identities=21%  Similarity=0.392  Sum_probs=80.0

Q ss_pred             CcEEeC-ccchHHHHh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----chhHHhhCc
Q 015217          161 ESIELN-SSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----EKSLMSKFN  229 (411)
Q Consensus       161 ~v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----~~~l~~~~~  229 (411)
                      ....++ .+++.+.+.   ..+++++|.||++||++|+.+.+..   .++.+.++ ++.+..+|.+.    +.+++++|+
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~  531 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYN  531 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcC
Confidence            455554 345555443   2357999999999999999998864   67777776 58888999875    357899999


Q ss_pred             cccccEEEEEcCCCCC--cccccCCCCHHHHHHHHHHH
Q 015217          230 VQGFPTILVFGADKDS--PIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +.++|++++|+.+++.  ..++.|..+.+++.+++.+.
T Consensus       532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            9999999999755543  35778999999999888764

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.80  E-value=1.4e-08  Score=73.71  Aligned_cols=68  Identities=25%  Similarity=0.421  Sum_probs=53.9

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      .+.+++++++|+|+++||++|+.+...+   ..+.+.+.+++.++.+|.++........+ .++|+++++.+
T Consensus        12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp   82 (82)
T PF13899_consen   12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP   82 (82)
T ss_dssp             HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred             HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence            5567899999999999999999999977   55666566789999999986665433222 67999999863

...

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.79  E-value=3.6e-08  Score=94.94  Aligned_cols=90  Identities=23%  Similarity=0.350  Sum_probs=73.7

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEE----------------------------eCCCchhHH
Q 015217          175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHV----------------------------DCDSEKSLM  225 (411)
Q Consensus       175 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v----------------------------~~~~~~~l~  225 (411)
                      ....++++|.||++||++|+...|.+.++++.+.. .+.+..|                            .++.+..++
T Consensus        53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la  132 (521)
T PRK14018         53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA  132 (521)
T ss_pred             ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence            34678999999999999999999999999999874 3555444                            334456788


Q ss_pred             hhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       226 ~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      +.|+|..+|+++++..++.....+.|..+.+.|..+|..
T Consensus       133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            999999999998887666656778899999999999873

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.79  E-value=2.7e-08  Score=77.43  Aligned_cols=79  Identities=19%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC-CCCCccc
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP-GKPPVDY  118 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~  118 (411)
                      .+.+++++++|.||+.||++|+.+....   .++.+....++..+.++.+....-....| .++|+++|+.. |+.+.+.
T Consensus        18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i   96 (130)
T cd02960          18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADI   96 (130)
T ss_pred             HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccc
Confidence            5567899999999999999999999965   44566665555555666542211111234 68999999955 5555555


Q ss_pred             CCCC
Q 015217          119 QGAR  122 (411)
Q Consensus       119 ~g~~  122 (411)
                      .|..
T Consensus        97 ~Gy~  100 (130)
T cd02960          97 TGRY  100 (130)
T ss_pred             cccc
Confidence            5533

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.78  E-value=5.7e-08  Score=78.82  Aligned_cols=85  Identities=18%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc------------hhHH-hhC---ccccccEEEEEcC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE------------KSLM-SKF---NVQGFPTILVFGA  241 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~------------~~l~-~~~---~v~~~P~i~~~~~  241 (411)
                      .+..+|.||++||++|+...|.+.+++++++  +.+..|+.+..            .... ..|   ++..+|+.+++..
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            4556999999999999999999999999985  34444444321            2233 345   7889999999976


Q ss_pred             CCCC-cccccCCCCHHHHHHHHHH
Q 015217          242 DKDS-PIPYEGARTAGAIESFALE  264 (411)
Q Consensus       242 ~~~~-~~~y~g~~~~~~i~~fi~~  264 (411)
                      ++.. ...+.|..+.+++.+.+.+
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHH
Confidence            5442 3357899998888877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.77  E-value=6.6e-08  Score=81.23  Aligned_cols=88  Identities=20%  Similarity=0.397  Sum_probs=74.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC----------------------chhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS----------------------EKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~----------------------~~~l~~~~~v~~~  233 (411)
                      .+++++|.||++||+.|+...+.+.++++++.+. +.+..|+++.                      +..+++.|++..+
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            4578999999999999999999999999999874 8888888653                      3467899999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      |+++++..++.....+.|..+.+++.+++.+
T Consensus       140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence            9999998777656678899999999888764

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.76  E-value=3.8e-08  Score=77.95  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=59.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---------------------------ccHhHHHhc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQEY   98 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---------------------------~~~~~~~~~   98 (411)
                      ++++++|.||++||++|.+..|.+.++.+.+++ .+.++.|+.+                           ....+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            679999999999999999999999999999985 5777777541                           122567788


Q ss_pred             CCCcccEEEEEe-CCCCCcccCCC
Q 015217           99 GIRGFPTIKVFV-PGKPPVDYQGA  121 (411)
Q Consensus        99 ~i~~~P~~~~~~-~g~~~~~~~g~  121 (411)
                      ++.++|+.++++ +|+....+.|+
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEecC
Confidence            999999999995 46555555553

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.76  E-value=6.6e-07  Score=88.45  Aligned_cols=178  Identities=13%  Similarity=0.189  Sum_probs=133.5

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcch
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP  126 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~  126 (411)
                      +.+.++.|.. .|..|.++...+++++..- ++|.+...+.+.          ...|++.++.+|+. -++|.|-....+
T Consensus        19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E   86 (515)
T TIGR03140        19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE   86 (515)
T ss_pred             CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence            4445555555 7999999999888888764 566664444321          34599988876653 589999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 015217          127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAAN  205 (411)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~  205 (411)
                      +..|+...+.                     ...+-..|+++.... +.. ..+..+-.|.++.|++|......+.+++.
T Consensus        87 f~s~i~~i~~---------------------~~~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~  144 (515)
T TIGR03140        87 FTSLVLAILQ---------------------VGGHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMAL  144 (515)
T ss_pred             HHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999988763                     233345666655554 333 34567889999999999999999999998


Q ss_pred             HhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       206 ~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ... ++..-.+|....++++++|++.++|++++   ++  ...+.|..+.+.+.+.+.+.
T Consensus       145 ~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i---~~--~~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       145 LNP-NISHTMIDGALFQDEVEALGIQGVPAVFL---NG--EEFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             hCC-CceEEEEEchhCHHHHHhcCCcccCEEEE---CC--cEEEecCCCHHHHHHHHhhc
Confidence            855 68888899999999999999999999987   23  34577888888877666544

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.75  E-value=5.4e-08  Score=84.53  Aligned_cols=102  Identities=13%  Similarity=0.043  Sum_probs=72.8

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c----HhHH-HhcC
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H----QSLA-QEYG   99 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~----~~~~-~~~~   99 (411)
                      ..++++.+. ...-++++++|.||++||+.|+...|.+.++.+.+++ .+.++.|+|+.       .    .+++ ++++
T Consensus        85 ~d~~G~~vs-Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g  163 (236)
T PLN02399         85 KDIDGKDVA-LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK  163 (236)
T ss_pred             ECCCCCEEe-HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcC
Confidence            344555444 2223579999999999999999999999999999986 48888888741       1    2332 2332


Q ss_pred             C----------------------------------CcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          100 I----------------------------------RGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       100 i----------------------------------~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +                                  .+.|+.++++ +|+.+.+|.|..+.+.+.+.+.+.+
T Consensus       164 ~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        164 AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence            1                                  2247777774 4666889999998888888877665

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.75  E-value=7.5e-08  Score=72.09  Aligned_cols=66  Identities=29%  Similarity=0.633  Sum_probs=53.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCch-------------------------hHHhhCcc
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEK-------------------------SLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~-------------------------~l~~~~~v  230 (411)
                      +++++|.||++||++|+...+.+.++.+.+.  +++.+..|+.+.+.                         .+.+.|++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            4689999999999999999999999999999  67999998877532                         37777888


Q ss_pred             ccccEEEEEcCCC
Q 015217          231 QGFPTILVFGADK  243 (411)
Q Consensus       231 ~~~P~i~~~~~~~  243 (411)
                      ..+|+++++..++
T Consensus        81 ~~iP~~~lld~~G   93 (95)
T PF13905_consen   81 NGIPTLVLLDPDG   93 (95)
T ss_dssp             TSSSEEEEEETTS
T ss_pred             CcCCEEEEECCCC
Confidence            8889988887654

...

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.71  E-value=1e-07  Score=81.50  Aligned_cols=104  Identities=11%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-----------ccHhHHHhcC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLAQEYG   99 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-----------~~~~~~~~~~   99 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+|+           +..+++++++
T Consensus        24 l~d~~G~~vs-L~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~  102 (199)
T PTZ00056         24 VKTLEGTTVP-MSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK  102 (199)
T ss_pred             EECCCCCEEe-HHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence            3344554444 2223588999999999999999999999999999986 5888899874           1234555555


Q ss_pred             CC------------------------------------ccc---EEEEE-eCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217          100 IR------------------------------------GFP---TIKVF-VPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       100 i~------------------------------------~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +.                                    ++|   +.+++ ++|+.+.++.|..+.+.+.+.+.+.+.
T Consensus       103 ~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        103 IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            41                                    112   34444 456667788888888888888877664

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.71  E-value=9.3e-08  Score=70.08  Aligned_cols=75  Identities=12%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      ++.-+..|+++||++|....+.+.+++..+. ++.+..+|.+..++++++|||.++|++++  + +  ...+.|..+.++
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--d-G--~~~~~G~~~~~e   85 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--N-G--ELFGFGRMTLEE   85 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--C-C--EEEEeCCCCHHH
Confidence            4567889999999999999999999998865 69999999999999999999999999975  2 3  244567655555


Q ss_pred             H
Q 015217          258 I  258 (411)
Q Consensus       258 i  258 (411)
                      +
T Consensus        86 ~   86 (89)
T cd03026          86 I   86 (89)
T ss_pred             H
Confidence            4

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.70  E-value=2.7e-07  Score=78.45  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-------------c-----cccHhHHHhcCCCcccEEE
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-------------A-----NEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-------------~-----~~~~~~~~~~~i~~~P~~~  107 (411)
                      .++++++|+||++||++|+...|.+.++.+....++.++..|             .     ....++++.|++.+.|+.+
T Consensus        72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            367899999999999999999999999887654344433311             0     0134678899999999988


Q ss_pred             EEeCCCCCcccCCCC
Q 015217          108 VFVPGKPPVDYQGAR  122 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~  122 (411)
                      +++..+. +++.|..
T Consensus       152 lID~~G~-I~~~g~~  165 (189)
T TIGR02661       152 LLDQDGK-IRAKGLT  165 (189)
T ss_pred             EECCCCe-EEEccCC
Confidence            8765433 4455543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.69  E-value=1.2e-07  Score=75.93  Aligned_cols=67  Identities=25%  Similarity=0.405  Sum_probs=54.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--------CeEEEEEeCCCc-------------------------hh
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSE-------------------------KS  223 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~-------------------------~~  223 (411)
                      .+++++|.|||+||++|+...|.+.++.+.+.+        .+.+..|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            468999999999999999999999998876653        367777765532                         24


Q ss_pred             HHhhCccccccEEEEEcCCC
Q 015217          224 LMSKFNVQGFPTILVFGADK  243 (411)
Q Consensus       224 l~~~~~v~~~P~i~~~~~~~  243 (411)
                      ++++|++.++|+.+++..++
T Consensus       104 l~~~y~v~~iPt~vlId~~G  123 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDG  123 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCC
Confidence            77788999999999998665

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.69  E-value=7.5e-08  Score=76.37  Aligned_cols=79  Identities=18%  Similarity=0.355  Sum_probs=61.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-----------------------CCCchhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-----------------------CDSEKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-----------------------~~~~~~l~~~~~v~~~  233 (411)
                      .+++++|.||++||++|+...+.+.++++.++  +.+..|+                       ++....+++.|++..+
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            36789999999999999999999999988863  5555444                       3445568888999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHH
Q 015217          234 PTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      |+.+++..++.....+.|..+.+.
T Consensus       102 P~~~~ld~~G~v~~~~~G~~~~~~  125 (127)
T cd03010         102 PETFLIDGDGIIRYKHVGPLTPEV  125 (127)
T ss_pred             CeEEEECCCceEEEEEeccCChHh
Confidence            988888766655667788777654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.69  E-value=2.3e-07  Score=72.01  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=76.0

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCC--CchhHHhhCccccccEEEEEcC-CCCCcc
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQGFPTILVFGA-DKDSPI  247 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~~P~i~~~~~-~~~~~~  247 (411)
                      ....+++.+|+|+++||++|+.+.. .|  .++.+.++.++.+..+|.+  +...++..|++.++|+++++.. ++....
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~   92 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK   92 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence            3456789999999999999999976 45  6777777777778777775  3457889999999999999987 566677


Q ss_pred             cccCCCCHHHHHHHHHHHh
Q 015217          248 PYEGARTAGAIESFALEQL  266 (411)
Q Consensus       248 ~y~g~~~~~~i~~fi~~~~  266 (411)
                      +..|..+.+.+...+.+.+
T Consensus        93 ~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          93 VWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             EEcCCCCHHHHHHHHHHHH
Confidence            7889999999888887764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.68  E-value=9.5e-08  Score=77.81  Aligned_cols=88  Identities=23%  Similarity=0.379  Sum_probs=66.5

Q ss_pred             eCccchhHHHhcCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc---------------------
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANEH---------------------   91 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~---------------------   91 (411)
                      .+.+.+. ...-++++++|.||++ ||++|+...|.+.++.+.+++ .+.++.|..+.+                     
T Consensus        16 ~~g~~~~-l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~   94 (146)
T PF08534_consen   16 LDGKPVS-LSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD   94 (146)
T ss_dssp             TTSEEEE-GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred             CCCCEec-HHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence            5555555 3335789999999999 999999999999999988665 477777766433                     


Q ss_pred             HhHHHhcCCC---------cccEEEEEeC-CCCCcccCCCCC
Q 015217           92 QSLAQEYGIR---------GFPTIKVFVP-GKPPVDYQGARD  123 (411)
Q Consensus        92 ~~~~~~~~i~---------~~P~~~~~~~-g~~~~~~~g~~~  123 (411)
                      ..+.++|++.         ++|+++++.. |+....+.|..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            3788899988         9999888865 544555555555

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.68  E-value=1.2e-07  Score=75.59  Aligned_cols=68  Identities=24%  Similarity=0.543  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCc------------------------hhHHhhCc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE------------------------KSLMSKFN  229 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~------------------------~~l~~~~~  229 (411)
                      .+++++|.||++||++|+...+.+.++.+.+++   .+.+..|+.+..                        ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            457899999999999999999999999988864   366666665533                        35778899


Q ss_pred             cccccEEEEEcCCCC
Q 015217          230 VQGFPTILVFGADKD  244 (411)
Q Consensus       230 v~~~P~i~~~~~~~~  244 (411)
                      +..+|+++++..+++
T Consensus        97 v~~~P~~~lid~~G~  111 (131)
T cd03009          97 IEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCEEEEECCCCC
Confidence            999999999976653

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.66  E-value=1.5e-07  Score=78.84  Aligned_cols=87  Identities=17%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC-----------------------CCchhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-----------------------DSEKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-----------------------~~~~~l~~~~~v~~~  233 (411)
                      .+++++|.||++||++|+...+.+.++++.   .+.+..|+.                       +....+.+.|++.++
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~  138 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence            567999999999999999999999888764   244444442                       333456778899999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |+.+++..++.....+.|..+.+++.+++.+.+
T Consensus       139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            988888766655667789999999999988875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.64  E-value=2.7e-07  Score=78.17  Aligned_cols=88  Identities=14%  Similarity=0.236  Sum_probs=68.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----------------------hHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----------------------SLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----------------------~l~~~~~v~~~  233 (411)
                      ..++++|.||++||++|+...|.+.++++.   .+.+..|+.+++.                       .+...||+..+
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            467899999999999999999999888653   4666667644322                       24457889999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      |+.+++..++.....+.|..+.+.+.+.+...+.
T Consensus       144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            9999987667667788899999888888877653

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.63  E-value=2e-07  Score=74.41  Aligned_cols=67  Identities=27%  Similarity=0.508  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCc-------------------------hhHHhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE-------------------------KSLMSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~-------------------------~~l~~~~  228 (411)
                      .+++++|.||++||++|+...+.+.++++.+++   .+.+..|+.+.+                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            468999999999999999999999999998876   366666665543                         2456679


Q ss_pred             ccccccEEEEEcCCC
Q 015217          229 NVQGFPTILVFGADK  243 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~  243 (411)
                      ++..+|+++++..++
T Consensus        96 ~v~~iPt~~lid~~G  110 (132)
T cd02964          96 KVEGIPTLVVLKPDG  110 (132)
T ss_pred             CCCCCCEEEEECCCC
Confidence            999999999997655

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.63  E-value=1.6e-07  Score=72.77  Aligned_cols=74  Identities=27%  Similarity=0.543  Sum_probs=62.5

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-----------------------hhHHhhCccccc
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE-----------------------KSLMSKFNVQGF  233 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~-----------------------~~l~~~~~v~~~  233 (411)
                      ++++++.|+++||+.|+...+.+.++.+.+.. .+.++.|+++..                       ..+.+.|++..+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL   98 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence            67999999999999999999999999999973 589999998875                       678999999999


Q ss_pred             cEEEEEcCCCCCcccccC
Q 015217          234 PTILVFGADKDSPIPYEG  251 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g  251 (411)
                      |+++++.+++.....|.|
T Consensus        99 P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          99 PTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             ceEEEECCCCcEEEEecC
Confidence            999999766644444433

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.60  E-value=6.8e-07  Score=67.12  Aligned_cols=94  Identities=24%  Similarity=0.418  Sum_probs=74.9

Q ss_pred             EeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC
Q 015217          164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK  243 (411)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~  243 (411)
                      .+++.+..+.+.....+++|.|+.+++.   .....|.++|..++..+.|+.+.   +..+++++++.. |++++|++..
T Consensus         3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~   75 (97)
T cd02981           3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE   75 (97)
T ss_pred             ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc
Confidence            4444443333456788889999998774   68899999999999889999866   677888888765 9999998766


Q ss_pred             CCcccccCCCCHHHHHHHHHH
Q 015217          244 DSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       244 ~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      +....|.|..+.++|.+||..
T Consensus        76 ~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          76 EEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             cCCccCCCCCCHHHHHHHHHh
Confidence            667889999999999999865

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PLN02412 probable glutathione peroxidase

Probab=98.60  E-value=2.3e-07  Score=77.09  Aligned_cols=89  Identities=16%  Similarity=0.090  Sum_probs=66.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c-Hh----HHHhcC--------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H-QS----LAQEYG--------------   99 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~-~~----~~~~~~--------------   99 (411)
                      ++++++|.||++||+.|++..|.+.++.+.+++ .+.++.|+++.       . .+    ++++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            579999999999999999999999999999986 58888888741       1 11    123332              


Q ss_pred             --------------------CCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          100 --------------------IRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       100 --------------------i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                          +.+.|+.+++ ++|+.+.++.|..+.+.+...+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l  164 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL  164 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                                2234666666 44666778889998888888877665

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.59  E-value=2.4e-07  Score=70.94  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=62.3

Q ss_pred             eHHHHHHHHHHhh-cCccEEEEecCCCchhhHHHhCCCCCC--CCeEEEeecCCCccccCCCCC-ChhHHHHHHHHHc
Q 015217          296 YLEMLLSVAEKFK-RGHYSFVWAAAGKQPDLENRVGVGGYG--YPALVALNVKKGVYTPLKSAF-ELEHIVEFVKEAG  369 (411)
Q Consensus       296 ~~~~~~~~a~~~~-~~~~~f~~i~~~~~~~~~~~f~~~~~~--~P~l~v~~~~~~~~~~~~~~~-~~~~i~~fi~~~~  369 (411)
                      +...++.+|++|+ ++ +.|+++|..+....++.||++..+  .|++++++..+.+|. +++++ |.++|.+|+.+++
T Consensus        36 ~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~-~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          36 WRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYV-MEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             HHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccC-CCcccCCHHHHHHHHHHhC
Confidence            4578999999999 68 999999998777799999999867  999999986556774 67888 9999999999873

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.1e-07  Score=78.29  Aligned_cols=85  Identities=24%  Similarity=0.531  Sum_probs=69.4

Q ss_pred             CCcEEeCccc-hHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccc-----
Q 015217          160 NESIELNSSN-FDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQ-----  231 (411)
Q Consensus       160 ~~v~~l~~~~-~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~-----  231 (411)
                      ..+..++..+ +.+.+.++ ...|+|-|++.|.+.|.+..|.|.+++..|.. .++||.||....++.+++|+|+     
T Consensus       124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s  203 (265)
T KOG0914|consen  124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS  203 (265)
T ss_pred             hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence            4456664433 33333333 44899999999999999999999999999988 5999999999999999999986     


Q ss_pred             -cccEEEEEcCCCC
Q 015217          232 -GFPTILVFGADKD  244 (411)
Q Consensus       232 -~~P~i~~~~~~~~  244 (411)
                       ..||+++|.+|.+
T Consensus       204 rQLPT~ilFq~gkE  217 (265)
T KOG0914|consen  204 RQLPTYILFQKGKE  217 (265)
T ss_pred             ccCCeEEEEccchh
Confidence             4799999987764

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.59  E-value=2.8e-07  Score=71.78  Aligned_cols=80  Identities=15%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             HHHhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCccc
Q 015217          172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP  248 (411)
Q Consensus       172 ~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~  248 (411)
                      +...+.+++++|.|+++||++|+.+...+   .++.+..+.++....++.+....-....| ..+|+++++..+++...+
T Consensus        17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~   95 (130)
T cd02960          17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRAD   95 (130)
T ss_pred             HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccc
Confidence            33456788999999999999999998865   56666666566666666543221122244 568999999777655555


Q ss_pred             ccCC
Q 015217          249 YEGA  252 (411)
Q Consensus       249 y~g~  252 (411)
                      ..|.
T Consensus        96 i~Gy   99 (130)
T cd02960          96 ITGR   99 (130)
T ss_pred             cccc
Confidence            5554

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.58  E-value=4.1e-07  Score=71.66  Aligned_cols=81  Identities=19%  Similarity=0.330  Sum_probs=62.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------CCCchhHHhhCccccccE
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD---------------------CDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~---------------------~~~~~~l~~~~~v~~~P~  235 (411)
                      ..++++|.||++||+.|+...+.+.++++.+.  +....++                     ++.+..+++.|++.++|+
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~   96 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA   96 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence            34789999999999999999999998887742  1111111                     134557999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIES  260 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~  260 (411)
                      ++++..++ ....+.|..+.+.|.+
T Consensus        97 ~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          97 IVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             EEEEcCCC-eEEEEeccCCHHHHHh
Confidence            99998766 5667788888877653

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.57  E-value=3.7e-07  Score=70.87  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=34.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV  216 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v  216 (411)
                      ..++++|.||++||++|+...+.+.++++.+.+.+.+..+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v   59 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA   59 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence            3678999999999999999999999999888776666655

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.53  E-value=3.4e-06  Score=84.18  Aligned_cols=187  Identities=13%  Similarity=0.161  Sum_probs=131.5

Q ss_pred             hHHHHhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc-CCCCCcc
Q 015217          170 FDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG-ADKDSPI  247 (411)
Q Consensus       170 ~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~-~~~~~~~  247 (411)
                      +...+.+-. .+.++.|.++.|..|.++...+++++ .+.+++.+...+..++..++++|++...|++.+++ ++....+
T Consensus       357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i  435 (555)
T TIGR03143       357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL  435 (555)
T ss_pred             HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence            444443333 45677888888999999999999999 55678988888888889999999999999999995 4433459


Q ss_pred             cccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE-------eHHHHHHHHHHhhcC--ccEEEEec
Q 015217          248 PYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-------YLEMLLSVAEKFKRG--HYSFVWAA  318 (411)
Q Consensus       248 ~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~--~~~f~~i~  318 (411)
                      +|.|-..-.++..|+...+......+.+.+-+ .+.+..+.++..+-+       +++...++++.+...  .+..-.++
T Consensus       436 ~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~-~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~  514 (555)
T TIGR03143       436 KFHGVPSGHELNSFILALYNAAGPGQPLGEEL-LEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMID  514 (555)
T ss_pred             EEEecCccHhHHHHHHHHHHhcCCCCCCCHHH-HHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEE
Confidence            99998888888888887766544444331111 123333333332222       444444444443322  38888899


Q ss_pred             CCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHH
Q 015217          319 AGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFV  365 (411)
Q Consensus       319 ~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi  365 (411)
                      ..+.++++++|++..  .|++++=   ++.  .+.|..+.++|.++|
T Consensus       515 ~~~~~~~~~~~~v~~--vP~~~i~---~~~--~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       515 VSHFPDLKDEYGIMS--VPAIVVD---DQQ--VYFGKKTIEEMLELI  554 (555)
T ss_pred             CcccHHHHHhCCcee--cCEEEEC---CEE--EEeeCCCHHHHHHhh
Confidence            999999999999986  9999983   222  356777889988876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>smart00594 UAS UAS domain

Probab=98.52  E-value=1.2e-06  Score=68.70  Aligned_cols=98  Identities=9%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC--chhHHhhCccccccEEEEE
Q 015217          165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~~~  239 (411)
                      -+-++..+...+..+..+|+|+++||+.|+.+....   .++.+.++.++.+..+|.++  ...++..|++.++|+++++
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l   93 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV   93 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence            333444444455677999999999999999987753   66777777777777777553  4468999999999999999


Q ss_pred             cCCCC-----CcccccCCCCHHHHHHHH
Q 015217          240 GADKD-----SPIPYEGARTAGAIESFA  262 (411)
Q Consensus       240 ~~~~~-----~~~~y~g~~~~~~i~~fi  262 (411)
                      ...+.     ...+..|..+.+++..++
T Consensus        94 ~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       94 DPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             ecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            65541     245678989998888764

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.50  E-value=1.3e-06  Score=73.25  Aligned_cols=69  Identities=22%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-----------------------------cHhHH
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-----------------------------HQSLA   95 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-----------------------------~~~~~   95 (411)
                      .+++++||+||++||+.|....+.+.++.+.+++ ++.++.|.++.                             ...++
T Consensus        23 ~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          23 ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            3688999999999999999999999999999974 68888887753                             12567


Q ss_pred             HhcCCCcccEEEEEeCCCC
Q 015217           96 QEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        96 ~~~~i~~~P~~~~~~~g~~  114 (411)
                      +.|++.+.|+++++..++.
T Consensus       103 ~~~~v~~~P~~~lid~~G~  121 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGK  121 (171)
T ss_pred             HHcCCCcCCcEEEECCCCe
Confidence            7899999999999965433

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.48  E-value=1.1e-06  Score=72.74  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------------chhHHhhCcc--ccccEEEEEcCCCCCc
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-------------EKSLMSKFNV--QGFPTILVFGADKDSP  246 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-------------~~~l~~~~~v--~~~P~i~~~~~~~~~~  246 (411)
                      +|.||++||++|+...|.+.++++++.  +.+..|+.+.             ...+...||+  ..+|+.+++..++...
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            778999999999999999999999985  5555555442             2236678885  6899999997766543


Q ss_pred             -ccccCCCCHHHHHHHHHHHhh
Q 015217          247 -IPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       247 -~~y~g~~~~~~i~~fi~~~~~  267 (411)
                       ..+.|..+.+.+.+.+.+.+.
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh
Confidence             368999999998888877653

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.47  E-value=8.4e-07  Score=68.96  Aligned_cols=73  Identities=38%  Similarity=0.727  Sum_probs=64.2

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcC--CCcccEEEEEeCCCCCcccCC
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYG--IRGFPTIKVFVPGKPPVDYQG  120 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g  120 (411)
                      ++++++.||++||++|+.+.|.+.++++.+.+.+.+..+|.. ..+.+...++  +..+|++.++.++.......+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            789999999999999999999999999999877899999997 7899999999  999999988888765444444

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.46  E-value=5.5e-07  Score=73.78  Aligned_cols=42  Identities=21%  Similarity=0.144  Sum_probs=37.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      ++++++|.||++||+ |+...|.+.++.+.+++ .+.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            589999999999999 99999999999999975 5888888763

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.44  E-value=9.9e-07  Score=93.61  Aligned_cols=93  Identities=16%  Similarity=0.314  Sum_probs=76.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeC---------------------------CCchhHHhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDC---------------------------DSEKSLMSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~---------------------------~~~~~l~~~~  228 (411)
                      ..++++|.||++||++|+...|.+.+++++|+++ +.+..|++                           +.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4689999999999999999999999999999875 66666642                           2234577889


Q ss_pred             ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      ++..+|+++++..+++...++.|....+.+.+++...+..+
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~  539 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY  539 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence            99999999999766665677889888899999998887643

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.44  E-value=1e-06  Score=72.23  Aligned_cols=98  Identities=19%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-----------ccHhHHHh-cCC-
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLAQE-YGI-  100 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-----------~~~~~~~~-~~i-  100 (411)
                      ++++.+. ...-++++++|.||++||++|+..+|.+.++.+.+++ .+.+..|+|+           ...+++++ +++ 
T Consensus        10 ~~G~~~~-l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~   88 (153)
T TIGR02540        10 ARGRTVS-LEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT   88 (153)
T ss_pred             CCCCEec-HHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC
Confidence            3444444 2223578999999999999999999999999999976 6888888862           11234432 332 


Q ss_pred             -------------------------CcccE----EEEE-eCCCCCcccCCCCCcchhHHHHHH
Q 015217          101 -------------------------RGFPT----IKVF-VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       101 -------------------------~~~P~----~~~~-~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                                               .+.|+    .+++ ++|+...+|.|..+.+.+...+.+
T Consensus        89 fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~  151 (153)
T TIGR02540        89 FPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA  151 (153)
T ss_pred             CCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence                                     12564    4444 456667788888887777666654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.41  E-value=6e-07  Score=71.28  Aligned_cols=67  Identities=28%  Similarity=0.568  Sum_probs=54.7

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEecccc-------------------------HhHHHhc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV---ATVAALDANEH-------------------------QSLAQEY   98 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---i~~~~vd~~~~-------------------------~~~~~~~   98 (411)
                      .++.+.++|.+.||++|+.|-|.+.+..+..+..   +.++-|.-|++                         .+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            5799999999999999999999999999888764   55555544432                         2789999


Q ss_pred             CCCcccEEEEEeCCC
Q 015217           99 GIRGFPTIKVFVPGK  113 (411)
Q Consensus        99 ~i~~~P~~~~~~~g~  113 (411)
                      ++.+.|++++....+
T Consensus       112 ~v~~iP~l~i~~~dG  126 (157)
T KOG2501|consen  112 EVKGIPALVILKPDG  126 (157)
T ss_pred             ccCcCceeEEecCCC
Confidence            999999999986543

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.3e-06  Score=72.98  Aligned_cols=172  Identities=17%  Similarity=0.274  Sum_probs=112.6

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcch
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP  126 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  126 (411)
                      +++..++.||++||..|.++...+..+++.. .+..+++++.+..++++..+.+...|++.++..|..+.+..|......
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~   94 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL   94 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence            7889999999999999999999999999988 668999999999999999999999999999988877777766654443


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCcc---chHHHHhcC-CCeEEEEEeC-----CCChhhhhhh
Q 015217          127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSS---NFDELVLKS-KDLWIVEFFA-----PWCGHCKKLA  197 (411)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~~~~~~~-~~~~lv~f~~-----~~c~~c~~~~  197 (411)
                      ...+ ........ ...           ..+....+.+....   ...+.+... +...+++|-.     |.|+..+.+.
T Consensus        95 ~~~~-~~~~~~~~-~~~-----------~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v  161 (227)
T KOG0911|consen   95 VSKV-EKLAESGS-ASL-----------GMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV  161 (227)
T ss_pred             HHHH-HHhhhhcc-ccc-----------CCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence            2222 22211110 000           00111111111100   122222222 2234555653     5787777776


Q ss_pred             HHHHHHHHHhcCCeEEEEEeCCCchhHHhhCc----cccccEEEE
Q 015217          198 PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN----VQGFPTILV  238 (411)
Q Consensus       198 ~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~----v~~~P~i~~  238 (411)
                      ..+...      .+.|+..|.-++.++.+...    ...+|.+++
T Consensus       162 ~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI  200 (227)
T KOG0911|consen  162 GILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV  200 (227)
T ss_pred             HHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeE
Confidence            666543      25588888888888776543    346787776

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.40  E-value=1.3e-06  Score=59.62  Aligned_cols=60  Identities=45%  Similarity=0.914  Sum_probs=52.5

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHH---hcCCCcccEEEEEeCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ---EYGIRGFPTIKVFVPG  112 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g  112 (411)
                      ++.||++||++|++..+.+.++ ....+++.+..++++.......   .+++..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            5789999999999999999998 5555679999999998877665   8899999999998876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.38  E-value=1.6e-07  Score=78.61  Aligned_cols=102  Identities=30%  Similarity=0.548  Sum_probs=90.0

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .+.++.++.+++...+   ...|++.|+++||+.|+.+.+.|...|.--.+ .+.++.||.+.++.|.-+|-+...|+|+
T Consensus        23 ~s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY   99 (248)
T KOG0913|consen   23 SSKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY   99 (248)
T ss_pred             cceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence            3478899999998864   56799999999999999999999998877666 5999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      -.++|.  .-+|.|+++..++.+|+...
T Consensus       100 HvkDGe--FrrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen  100 HVKDGE--FRRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             Eeeccc--cccccCcccchhHHHHHHhh
Confidence            998766  88999999999999998554

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.38  E-value=1.1e-06  Score=63.65  Aligned_cols=66  Identities=33%  Similarity=0.555  Sum_probs=52.1

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      ..+.+++++|.|+++||+.|+.+...+   .++.+.+..++.+..+|.+......+ +...++|+++++.
T Consensus        13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld   81 (82)
T PF13899_consen   13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD   81 (82)
T ss_dssp             HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred             HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence            456689999999999999999999887   56666677789999999876665432 2225699999985

...

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.35  E-value=2.5e-06  Score=67.46  Aligned_cols=75  Identities=12%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC---------------------------CchhHHhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD---------------------------SEKSLMSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~---------------------------~~~~l~~~~  228 (411)
                      ..++++|.||+.||+.|....+.+.++.+++.+ .+.+..|+.+                           ....+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            457999999999999999999999999999986 4777666541                           122356667


Q ss_pred             ccccccEEEEEcCCCCCcccccC
Q 015217          229 NVQGFPTILVFGADKDSPIPYEG  251 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~y~g  251 (411)
                      ++..+|+.+++..++.....+.|
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEec
Confidence            88888888888665543444444

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.35  E-value=1e-05  Score=63.94  Aligned_cols=111  Identities=23%  Similarity=0.316  Sum_probs=83.6

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCC--C-hhh-hhhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHhhCccc--c
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPW--C-GHC-KKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQ--G  232 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c-~~c-~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~l~~~~~v~--~  232 (411)
                      +.+++|++.+..+..=..+..-+|.|...-  | +.+ ......+.++|+.|+++ +.|+.+|.+....+.+.||+.  .
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~   81 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG   81 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence            458888887765532233556666665421  1 112 56788999999999999 999999999988899999995  4


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcC
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV  270 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~  270 (411)
                      +|+++++.........+.|+++.++|.+|+...+....
T Consensus        82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence            89999997654323337799999999999999887554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.33  E-value=2.7e-06  Score=81.49  Aligned_cols=103  Identities=22%  Similarity=0.353  Sum_probs=77.8

Q ss_pred             EEeCcc-chHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHH-HHHHHhcC-CeEEEEEeCCCc----hhHHhhCcccccc
Q 015217          163 IELNSS-NFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWK-KAANNLKG-KVKLGHVDCDSE----KSLMSKFNVQGFP  234 (411)
Q Consensus       163 ~~l~~~-~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~-~~a~~~~~-~~~f~~v~~~~~----~~l~~~~~v~~~P  234 (411)
                      ..++.. ++++.+.+. ++++++.||++||-.|+.+.+.-- +....++- .+..-.+|.+.+    .++.++||+-+.|
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P  536 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP  536 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence            556666 666654333 239999999999999999987542 33333322 477888887654    3688999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++++|..+++++....|.++.+.+.+++++.
T Consensus       537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         537 TYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            9999986666677789999999999998764

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.31  E-value=2.1e-06  Score=60.65  Aligned_cols=68  Identities=19%  Similarity=0.404  Sum_probs=50.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCCCCcccCCCCCcchh
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI  127 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l  127 (411)
                      +..|+++||++|+...+.+.+      ..+.+..+|++++++    +++.+++.++|++++.  |+.   ..| .+++.|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i   69 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL   69 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence            578999999999999888765      247888899987654    5677999999998773  432   444 355666


Q ss_pred             HHHH
Q 015217          128 AEFA  131 (411)
Q Consensus       128 ~~~~  131 (411)
                      .+++
T Consensus        70 ~~~i   73 (74)
T TIGR02196        70 DQLL   73 (74)
T ss_pred             HHHh
Confidence            6554

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.30  E-value=3e-06  Score=60.26  Aligned_cols=73  Identities=25%  Similarity=0.573  Sum_probs=55.5

Q ss_pred             EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCC-CCCcchhHHHH
Q 015217           53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG-ARDVKPIAEFA  131 (411)
Q Consensus        53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g-~~~~~~l~~~~  131 (411)
                      |.+++++|++|..+...+.+++..+ + +.+-.+|..+.+++ .+||+..+|++++  +|+  ..+.| ..+.+.+..|+
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l   75 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL   75 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence            3447888999999999999999988 4 66777777666666 9999999999865  665  57888 77777777776


Q ss_pred             H
Q 015217          132 L  132 (411)
Q Consensus       132 ~  132 (411)
                      +
T Consensus        76 ~   76 (76)
T PF13192_consen   76 E   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            3

...

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.21  E-value=5.1e-06  Score=65.41  Aligned_cols=67  Identities=24%  Similarity=0.509  Sum_probs=56.0

Q ss_pred             CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------cHhHHHhcCCC--
Q 015217           47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIR--  101 (411)
Q Consensus        47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------~~~~~~~~~i~--  101 (411)
                      .+++++|.||+. ||++|+...+.+.++...++. ++.++.|..+.                     +.++++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            679999999999 999999999999999998885 58888887753                     23678888888  


Q ss_pred             ----cccEEEEEeCCC
Q 015217          102 ----GFPTIKVFVPGK  113 (411)
Q Consensus       102 ----~~P~~~~~~~g~  113 (411)
                          ..|+++++..++
T Consensus       104 ~~~~~~p~~~lid~~g  119 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDG  119 (124)
T ss_dssp             TTSEESEEEEEEETTS
T ss_pred             cCCceEeEEEEECCCC
Confidence                888888887654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.21  E-value=7e-06  Score=66.19  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------cHhHHHhcCCCcc
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIRGF  103 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------~~~~~~~~~i~~~  103 (411)
                      ++++++|.|| +.||+.|....+.+.++.+.+.+ ++.++.|..+.                     +..+++.||+...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            4889999999 58999999999999999988864 46776665542                     2367888888887


Q ss_pred             ---------cEEEEEeC-CCCCcccCCCCCcchhHH
Q 015217          104 ---------PTIKVFVP-GKPPVDYQGARDVKPIAE  129 (411)
Q Consensus       104 ---------P~~~~~~~-g~~~~~~~g~~~~~~l~~  129 (411)
                               |+.++++. |+....+.|......+.+
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence                     88888864 666777777776555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.20  E-value=5.7e-05  Score=57.09  Aligned_cols=105  Identities=21%  Similarity=0.419  Sum_probs=79.3

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH-hcC--CeEEEEEeCC-----CchhHHhhCccc
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN-LKG--KVKLGHVDCD-----SEKSLMSKFNVQ  231 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~-~~~--~~~f~~v~~~-----~~~~l~~~~~v~  231 (411)
                      ...+.|++-+|.+. +...+.++|.|-... |+ -+....|.++|++ ...  .+-++.|-..     .+.+|+++|++.
T Consensus         4 ~G~v~LD~~tFdKv-i~kf~~~LVKFD~ay-Py-GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~   80 (126)
T PF07912_consen    4 KGCVPLDELTFDKV-IPKFKYVLVKFDVAY-PY-GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID   80 (126)
T ss_dssp             TTSEEESTTHHHHH-GGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred             Cceeeccceehhhe-eccCceEEEEEeccC-CC-cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence            45789999999996 566789999997643 21 5677889999944 322  5888888643     467899999994


Q ss_pred             --cccEEEEEcCCCCCcccc--cCCCCHHHHHHHHHHHhh
Q 015217          232 --GFPTILVFGADKDSPIPY--EGARTAGAIESFALEQLE  267 (411)
Q Consensus       232 --~~P~i~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~~  267 (411)
                        .+|.+.+|..+.+.++.|  .|+.+.++|.+|+..+..
T Consensus        81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence              689999999888889999  889999999999998854

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.20  E-value=2.4e-05  Score=60.01  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH---hcCCeEEEEEeCCCchhHHhhCcccc--ccEE
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN---LKGKVKLGHVDCDSEKSLMSKFNVQG--FPTI  236 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~---~~~~~~f~~v~~~~~~~l~~~~~v~~--~P~i  236 (411)
                      |.+++.++.... .....+..++|+.+  ..-..+...+.++|+.   +++++.|+.+|.+......+.||++.  +|.+
T Consensus         1 ~~e~t~e~~~~~-~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i   77 (111)
T cd03072           1 VREITFENAEEL-TEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI   77 (111)
T ss_pred             CcccccccHHHH-hcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence            356777788764 45554444455543  2236788999999999   99999999999988777999999986  8999


Q ss_pred             EEEcCCCCCccc-ccCCCCHHHHHHHHHHHhh
Q 015217          237 LVFGADKDSPIP-YEGARTAGAIESFALEQLE  267 (411)
Q Consensus       237 ~~~~~~~~~~~~-y~g~~~~~~i~~fi~~~~~  267 (411)
                      .+....+...+. +.+..+.++|..|+...+.
T Consensus        78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            998654422344 5678899999999988653

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.1e-05  Score=61.62  Aligned_cols=86  Identities=16%  Similarity=0.290  Sum_probs=68.4

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----------------chhHHhhCcccccc
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----------------EKSLMSKFNVQGFP  234 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----------------~~~l~~~~~v~~~P  234 (411)
                      +...++..++.|.++.|.+|..+....   .++-..+.+++.++.++...                .++|++.|+++++|
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP  117 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP  117 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence            445577899999999999999998876   55666777788888877442                34799999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIE  259 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~  259 (411)
                      ++++|...++......|-+..++..
T Consensus       118 tfvFfdk~Gk~Il~lPGY~ppe~Fl  142 (182)
T COG2143         118 TFVFFDKTGKTILELPGYMPPEQFL  142 (182)
T ss_pred             eEEEEcCCCCEEEecCCCCCHHHHH
Confidence            9999988776566778887776654

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.15  E-value=1e-05  Score=62.39  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=71.1

Q ss_pred             HHhcCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCCcccEEEEEe--CCC-
Q 015217           43 KVLNANGVVLVEFYAP----WCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKVFV--PGK-  113 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~--~g~-  113 (411)
                      ....+.|+++|++|++    ||..|+... .=.++.+.+..++.+...|++.  ..+++..+++.++|++.++.  +++ 
T Consensus        12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~   90 (116)
T cd02991          12 DAKQELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM   90 (116)
T ss_pred             HHHhhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence            4466889999999999    788885533 2245666666778888888874  45799999999999999983  232 


Q ss_pred             -CCcccCCCCCcchhHHHHHHHH
Q 015217          114 -PPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       114 -~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                       .+.+..|..+++++...+...+
T Consensus        91 ~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          91 TIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHH
Confidence             2668899999999999988765

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.14  E-value=2e-05  Score=67.02  Aligned_cols=86  Identities=23%  Similarity=0.238  Sum_probs=60.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-------------C-----CCchhHHhhCccccccEEEE
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-------------C-----DSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-------------~-----~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ..++++|+||++||+.|+...|.+.++.+....++.+...+             .     ....++.+.|++..+|+.++
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l  152 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL  152 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence            45789999999999999999999999887654344433311             0     11345778899999999999


Q ss_pred             EcCCCCCcccccCCC-CHHHHHHHHHH
Q 015217          239 FGADKDSPIPYEGAR-TAGAIESFALE  264 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~-~~~~i~~fi~~  264 (411)
                      +..++  .+.+.|.. ..+.+.+.+..
T Consensus       153 ID~~G--~I~~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       153 LDQDG--KIRAKGLTNTREHLESLLEA  177 (189)
T ss_pred             ECCCC--eEEEccCCCCHHHHHHHHHH
Confidence            87666  45566653 44566555543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.13  E-value=1.7e-05  Score=64.47  Aligned_cols=78  Identities=26%  Similarity=0.473  Sum_probs=60.7

Q ss_pred             CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC---------------------chhHHhhCccc--
Q 015217          177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS---------------------EKSLMSKFNVQ--  231 (411)
Q Consensus       177 ~~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~---------------------~~~l~~~~~v~--  231 (411)
                      ..++++|.||+. ||++|+...+.+.++++.+..+ +.+..|..+.                     +..+.+.|++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            467899999999 9999999999999999987764 7777666443                     33588888988  


Q ss_pred             -------cccEEEEEcCCCCCcccccCCCC
Q 015217          232 -------GFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       232 -------~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                             .+|+++++..++.......|...
T Consensus       107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                   89999999877754444455444

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=6.2e-05  Score=66.16  Aligned_cols=108  Identities=20%  Similarity=0.292  Sum_probs=82.7

Q ss_pred             CCCCCcEEeCccchhHHHhc--CCCeEEEEEECCC----ChhhhhhhHHHHHHHHHhCC--------CeEEEEEeccccH
Q 015217           27 GSSSPVVQLTPNNFKSKVLN--ANGVVLVEFYAPW----CGHCQALTPIWEKAATVLKG--------VATVAALDANEHQ   92 (411)
Q Consensus        27 ~~~~~~~~l~~~~f~~~~~~--~~~~~~v~f~~~~----C~~C~~~~~~~~~~~~~~~~--------~i~~~~vd~~~~~   92 (411)
                      ..+..|+.++++.|.+.+..  ++...+|+|+|..    |.-|+.+..++.-++..+..        ++-|.+||.++.+
T Consensus        37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p  116 (331)
T KOG2603|consen   37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP  116 (331)
T ss_pred             cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence            67788999999999954433  3346889999874    99999999999999987751        5899999999999


Q ss_pred             hHHHhcCCCcccEEEEEeCCCCCc----cc---CCCCCcchhHHHHHHH
Q 015217           93 SLAQEYGIRGFPTIKVFVPGKPPV----DY---QGARDVKPIAEFALQQ  134 (411)
Q Consensus        93 ~~~~~~~i~~~P~~~~~~~g~~~~----~~---~g~~~~~~l~~~~~~~  134 (411)
                      +..+.++++..|++++|.+.+.-.    .+   .-...++++.+|+++.
T Consensus       117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~  165 (331)
T KOG2603|consen  117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR  165 (331)
T ss_pred             HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence            999999999999999996533211    11   1122366677777654

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.11  E-value=9.4e-06  Score=57.87  Aligned_cols=56  Identities=27%  Similarity=0.503  Sum_probs=42.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHh-----cCCCcccEEEEEeCCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE-----YGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~-----~~i~~~P~~~~~~~g~~  114 (411)
                      ++.||++||++|+++.+.+.+..      +.+..+|+++++.....     +++.++|++ ++.+|..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~   62 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF   62 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence            67899999999999999886653      34556888877655544     389999997 5666643

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.10  E-value=2.6e-05  Score=65.91  Aligned_cols=101  Identities=11%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             EeCccchhHHHhcCCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c-H---hH-HHhc-
Q 015217           34 QLTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H-Q---SL-AQEY-   98 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~-~---~~-~~~~-   98 (411)
                      .++++.+. ...-++++ +++.+|++||++|+..+|.+.++.+.+++ .+.++.|+|+.       + .   .+ .+++ 
T Consensus        27 d~~G~~vs-Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~  105 (183)
T PTZ00256         27 DIDGQLVQ-LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN  105 (183)
T ss_pred             cCCCCEEe-HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC
Confidence            34454444 22225665 45667999999999999999999999986 58888888641       0 1   11 1122 


Q ss_pred             -----------------------------------CCCcccE---EEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           99 -----------------------------------GIRGFPT---IKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        99 -----------------------------------~i~~~P~---~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                                         ++.++|+   .+++ ++|+.+.+|.|..+.+.+.+.+.+.+
T Consensus       106 ~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll  181 (183)
T PTZ00256        106 VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL  181 (183)
T ss_pred             CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence                                               2335673   3444 45666778888888887777776654

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.09  E-value=2e-05  Score=67.93  Aligned_cols=82  Identities=15%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------CchhHHhhCccccccEEEEEcCCC-CC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------SEKSLMSKFNVQGFPTILVFGADK-DS  245 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------~~~~l~~~~~v~~~P~i~~~~~~~-~~  245 (411)
                      ++..+++||.+.|+.|+.+.+++..+++.++  +.+..|+.|           .+..+++++||..+|+++++..+. ..
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~  197 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW  197 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence            5678999999999999999999999999996  444444444           357899999999999999997665 32


Q ss_pred             cccccCCCCHHHHHHH
Q 015217          246 PIPYEGARTAGAIESF  261 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~f  261 (411)
                      ...-.|..+.++|.+-
T Consensus       198 ~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  198 YPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEeeecCCHHHHHHh
Confidence            3333577888887653

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.09  E-value=5e-06  Score=67.64  Aligned_cols=93  Identities=19%  Similarity=0.278  Sum_probs=77.8

Q ss_pred             CCcEEeC-ccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           30 SPVVQLT-PNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        30 ~~~~~l~-~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ....++. ..+|- ....+...+++.||-+.-..|+-+...++.+++.+-+ ..|++||+.+.|-++.+++|.-.|++.+
T Consensus        66 G~y~ev~~Ekdf~-~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   66 GEYEEVASEKDFF-EEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             ceEEEeccHHHHH-HHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            3345555 55666 4456788999999999999999999999999998876 5999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCc
Q 015217          109 FVPGKPPVDYQGARDV  124 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~  124 (411)
                      |.+|....++.|..+.
T Consensus       144 ~k~g~~~D~iVGF~dL  159 (211)
T KOG1672|consen  144 FKNGKTVDYVVGFTDL  159 (211)
T ss_pred             EEcCEEEEEEeeHhhc
Confidence            9999876666664433

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.09  E-value=1.7e-05  Score=68.42  Aligned_cols=82  Identities=21%  Similarity=0.284  Sum_probs=65.6

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-----------ccHhHHHhcCCCcccEEEEEeCCC-C
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-----------EHQSLAQEYGIRGFPTIKVFVPGK-P  114 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i~~~P~~~~~~~g~-~  114 (411)
                      .++..|++||.+.|+.|+.+.|.+..+++.+.  +.+..|+.|           .+..+++++||..+|+++++..++ .
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            57899999999999999999999999999984  444445554           357899999999999999997654 2


Q ss_pred             -CcccCCCCCcchhHHH
Q 015217          115 -PVDYQGARDVKPIAEF  130 (411)
Q Consensus       115 -~~~~~g~~~~~~l~~~  130 (411)
                       ...-.|..+.++|.+-
T Consensus       197 ~~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEEeeecCCHHHHHHh
Confidence             3344688888877654

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.07  E-value=3e-05  Score=55.09  Aligned_cols=70  Identities=20%  Similarity=0.491  Sum_probs=54.0

Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccC-CCCHHHHHHHH
Q 015217          185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEG-ARTAGAIESFA  262 (411)
Q Consensus       185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi  262 (411)
                      +++++|+.|..+...+.+++..++  +.+-.++....+.+ .+||+.++|++++   ++  ...+.| -.+.+.+.+|+
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l   75 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELL   75 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHh
Confidence            367789999999999999999984  66677776555555 9999999999977   33  577889 56778888776

...

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.05  E-value=9.9e-05  Score=55.79  Aligned_cols=96  Identities=11%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             cEEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..+++ +++..+ .. .+...+|.|+...-   ......|.++|..++..+.|+...   +..+.+.+++. .|+++++
T Consensus         2 v~~i~~~~~~e~~-~~~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~   73 (102)
T cd03066           2 VEIINSERELQAF-ENIEDDIKLIGYFKSED---SEHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY   73 (102)
T ss_pred             ceEcCCHHHHHHH-hcccCCeEEEEEECCCC---CHHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence            345544 446665 45 56677777776533   367889999999999999998744   66778888876 5999999


Q ss_pred             cCCCCCcccc-cCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPY-EGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y-~g~~~~~~i~~fi~~~  265 (411)
                      +...+....| .|..+.+.|.+||..+
T Consensus        74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          74 EPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            7644556779 7788999999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.05  E-value=3.5e-05  Score=67.13  Aligned_cols=90  Identities=13%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------c----hhHH-hhCcc-------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E----KSLM-SKFNV-------------  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~----~~l~-~~~~v-------------  230 (411)
                      ..++++|.||++||++|....+.+.++.+++.++ +.+..|+++.       +    ...+ +++++             
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            3579999999999999999999999999999874 8888888641       1    1222 23332             


Q ss_pred             ---------------------ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          231 ---------------------QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       231 ---------------------~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                                           ...|+.+++..+++...+|.|..+.++|...|.+.+
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence                                 113667777766666777888888888887776654

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.05  E-value=5.7e-05  Score=63.15  Aligned_cols=91  Identities=14%  Similarity=0.285  Sum_probs=69.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-----------------------------chhHHh
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-----------------------------EKSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-----------------------------~~~l~~  226 (411)
                      ..++++++||++||+.|....+.+.++...+.+ ++.|..|+.+.                             +..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            467899999999999999999999999999985 58888887643                             123567


Q ss_pred             hCccccccEEEEEcCCCCCcccccC-----------CCCHHHHHHHHHHHhhhc
Q 015217          227 KFNVQGFPTILVFGADKDSPIPYEG-----------ARTAGAIESFALEQLETN  269 (411)
Q Consensus       227 ~~~v~~~P~i~~~~~~~~~~~~y~g-----------~~~~~~i~~fi~~~~~~~  269 (411)
                      .|++...|+++++..++.  +.|.+           ..+...+.+-|...+...
T Consensus       104 ~~~v~~~P~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  155 (171)
T cd02969         104 AYGAACTPDFFLFDPDGK--LVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK  155 (171)
T ss_pred             HcCCCcCCcEEEECCCCe--EEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence            888999999999976663  34443           234567777777766543

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.03  E-value=5e-05  Score=67.42  Aligned_cols=105  Identities=19%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CCCcEEeCc-cchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIELNS-SNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      -..+.+++. +.|.+.+....  ..++|+||.+.++.|..+...+..+|..|.. ++|..|..+..+ +..+|....+|+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt  201 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT  201 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence            345788865 77888664443  3789999999999999999999999999885 999998866544 678899999999


Q ss_pred             EEEEcCCCCCcccc------cC-CCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPY------EG-ARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y------~g-~~~~~~i~~fi~~~~  266 (411)
                      |++|++|.- ...+      -| .++..+|..|+.++-
T Consensus       202 llvYk~G~l-~~~~V~l~~~~g~df~~~dlE~~L~~~G  238 (265)
T PF02114_consen  202 LLVYKNGDL-IGNFVGLTDLLGDDFFTEDLEAFLIEYG  238 (265)
T ss_dssp             EEEEETTEE-EEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred             EEEEECCEE-EEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence            999997642 1111      12 467788888887764

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.03  E-value=3.3e-05  Score=64.23  Aligned_cols=42  Identities=17%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEecc
Q 015217           47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~   89 (411)
                      ++++++|.||+.| |++|....+.+.++.+.+. ++.++.|.++
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D   85 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISAD   85 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCC
Confidence            5789999999999 9999999999999999884 5677767664

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.03  E-value=1.7e-05  Score=63.17  Aligned_cols=68  Identities=25%  Similarity=0.541  Sum_probs=55.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---eEEEEEeCCCc-------------------------hhHHhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSE-------------------------KSLMSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~-------------------------~~l~~~~  228 (411)
                      .++.+.++|.+.||++|+.+.|.+.+........   +.+..|+.+.+                         .+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            4589999999999999999999988888887775   66676765542                         3478899


Q ss_pred             ccccccEEEEEcCCCC
Q 015217          229 NVQGFPTILVFGADKD  244 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~  244 (411)
                      +|...|++++....+.
T Consensus       112 ~v~~iP~l~i~~~dG~  127 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGT  127 (157)
T ss_pred             ccCcCceeEEecCCCC
Confidence            9999999999976653

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.02  E-value=3.1e-05  Score=62.66  Aligned_cols=82  Identities=17%  Similarity=0.352  Sum_probs=56.8

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEeccccHhHHHhc--------C
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDANEHQSLAQEY--------G   99 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~~~~~~~~~~--------~   99 (411)
                      .-...+++.+. .+..++++++|.++.+||..|..+..+ +  .++++.+..++.-++||-++.+++-..|        |
T Consensus        21 ~W~~w~~ea~~-~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~   99 (163)
T PF03190_consen   21 NWQPWGEEALE-KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSG   99 (163)
T ss_dssp             --B-SSHHHHH-HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred             CcccCCHHHHH-HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcC
Confidence            34456666777 778899999999999999999988873 3  5688888888888999999999888887        7


Q ss_pred             CCcccEEEEEeCCC
Q 015217          100 IRGFPTIKVFVPGK  113 (411)
Q Consensus       100 i~~~P~~~~~~~g~  113 (411)
                      ..|+|+.+++.+..
T Consensus       100 ~gGwPl~vfltPdg  113 (163)
T PF03190_consen  100 SGGWPLTVFLTPDG  113 (163)
T ss_dssp             ---SSEEEEE-TTS
T ss_pred             CCCCCceEEECCCC
Confidence            88999988886543

; PDB: 3IRA_A.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.02  E-value=2.6e-05  Score=52.94  Aligned_cols=60  Identities=38%  Similarity=0.800  Sum_probs=50.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh---hCccccccEEEEEcCC
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS---KFNVQGFPTILVFGAD  242 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~---~~~v~~~P~i~~~~~~  242 (411)
                      ++.|+.+||+.|....+.+.++ ......+.+..++++.......   .+++..+|+++++..+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 5555679999999988776655   7889999999998765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.01  E-value=4e-05  Score=65.53  Aligned_cols=43  Identities=12%  Similarity=0.165  Sum_probs=38.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..++++|.||++||++|+...+.+.++.+++.++ +.+..|+++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~   81 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS   81 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence            3579999999999999999999999999999874 888888763

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.01  E-value=3.9e-05  Score=64.30  Aligned_cols=86  Identities=15%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| +.||+.|....+.+.++.+.+.. ++.++.|.++.                            ...+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            5789999999 89999999999999999999864 46666665542                            225667


Q ss_pred             hcCCC------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHH
Q 015217           97 EYGIR------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFAL  132 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~  132 (411)
                      +||+.      ..|+.++++. |+....+.+.    .+.+++.+.+.
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~  154 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD  154 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            77876      5678888864 5444444332    23344555554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.01  E-value=3.9e-05  Score=59.33  Aligned_cols=67  Identities=33%  Similarity=0.692  Sum_probs=59.5

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCc--cccccEEEEEcCCCC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFN--VQGFPTILVFGADKD  244 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~--v~~~P~i~~~~~~~~  244 (411)
                      .++.++.||++||++|+...+.+.++++.+...+.+..++.. ....+...|+  +..+|+++++.++..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  101 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE  101 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence            668888889999999999999999999999988889999986 7888999999  899999998876654

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.00  E-value=1.4e-05  Score=57.98  Aligned_cols=58  Identities=29%  Similarity=0.433  Sum_probs=44.4

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----hHHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+++||++|+++.+.+.+..  .++.+.+..+|.+.+.     .+.+.+|+..+|++++  +|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            57899999999999999999877  3444677777776443     3666779999999743  554

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.99  E-value=8.8e-05  Score=56.25  Aligned_cols=89  Identities=27%  Similarity=0.494  Sum_probs=66.7

Q ss_pred             cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC------
Q 015217          168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA------  241 (411)
Q Consensus       168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~------  241 (411)
                      +++..+ ....+..+|.|+...-   ......|.++|..++..+.|+...   +..+.+.+++  .|++++|++      
T Consensus         9 ~~l~~f-~~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~k   79 (104)
T cd03069           9 AEFEKF-LSDDDASVVGFFEDED---SKLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSNK   79 (104)
T ss_pred             HHHHHH-hccCCcEEEEEEcCCC---chHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhcc
Confidence            345554 4556667777776532   357899999999999889998744   6678889998  588999943      


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      -.+....|.|..+.+.|.+||..+
T Consensus        80 ~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          80 FEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cCcccccccCcCCHHHHHHHHHhh
Confidence            234456799999999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.97  E-value=2.3e-05  Score=69.57  Aligned_cols=89  Identities=17%  Similarity=0.321  Sum_probs=65.5

Q ss_pred             CCcEEeCc-cchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           30 SPVVQLTP-NNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        30 ~~~~~l~~-~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ..+.+++. +.|...+..  ++..|||+||.+.++.|+.+...|..+|..++. +.|++|....-+ ++..|.+...|+|
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPtl  202 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPTL  202 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCEE
Confidence            45678864 677744433  245799999999999999999999999999875 799999987665 7889999999999


Q ss_pred             EEEeCCCCCcccCC
Q 015217          107 KVFVPGKPPVDYQG  120 (411)
Q Consensus       107 ~~~~~g~~~~~~~g  120 (411)
                      ++|++|..+.++.|
T Consensus       203 lvYk~G~l~~~~V~  216 (265)
T PF02114_consen  203 LVYKNGDLIGNFVG  216 (265)
T ss_dssp             EEEETTEEEEEECT
T ss_pred             EEEECCEEEEeEEe
Confidence            99999876444433

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.96  E-value=3.6e-05  Score=54.18  Aligned_cols=68  Identities=16%  Similarity=0.448  Sum_probs=51.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      +.+|+++||++|+...+.+.+      ..+.+..+|.+.++.    +++.+++.++|++++.   +.   ...| .+.+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~---~~---~~~g-~~~~~   68 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG---HK---IIVG-FDPEK   68 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC---CE---EEee-CCHHH
Confidence            568999999999999888865      247788888876543    5667999999999884   21   1445 57778


Q ss_pred             HHHHH
Q 015217          258 IESFA  262 (411)
Q Consensus       258 i~~fi  262 (411)
                      |.+++
T Consensus        69 i~~~i   73 (74)
T TIGR02196        69 LDQLL   73 (74)
T ss_pred             HHHHh
Confidence            87775

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00017  Score=63.49  Aligned_cols=113  Identities=23%  Similarity=0.378  Sum_probs=88.6

Q ss_pred             CCCCcEEeCccchHHHHhcCCC--eEEEEEeCC----CChhhhhhhHHHHHHHHHhcC--------CeEEEEEeCCCchh
Q 015217          158 DSNESIELNSSNFDELVLKSKD--LWIVEFFAP----WCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSEKS  223 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~~~----~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~~~  223 (411)
                      +...|+.+++..+..++.....  ..+|+|.+.    .|+-|+...+.|.-+|..++.        ++-|+.||.++.+.
T Consensus        38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~  117 (331)
T KOG2603|consen   38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ  117 (331)
T ss_pred             CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence            5678999999999998764433  677788763    699999999999999998864        58899999999999


Q ss_pred             HHhhCccccccEEEEEcCCCCC---cccccC---CCCHHHHHHHHHHHhhhcC
Q 015217          224 LMSKFNVQGFPTILVFGADKDS---PIPYEG---ARTAGAIESFALEQLETNV  270 (411)
Q Consensus       224 l~~~~~v~~~P~i~~~~~~~~~---~~~y~g---~~~~~~i~~fi~~~~~~~~  270 (411)
                      +.+.++++++|++++|.+....   ...+.+   ...++++.+|+.+...-+.
T Consensus       118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v  170 (331)
T KOG2603|consen  118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV  170 (331)
T ss_pred             HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence            9999999999999999543321   111211   2348999999988876444

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.91  E-value=6.2e-05  Score=61.26  Aligned_cols=45  Identities=18%  Similarity=0.232  Sum_probs=35.7

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccH
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQ   92 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~   92 (411)
                      ++.+++.|++.||+.|+...+.+.++.+.+.+ .+.++.|..+...
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~   69 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE   69 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence            34555555699999999999999999999864 5888888877544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.91  E-value=8e-05  Score=61.09  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc--------------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE--------------------   90 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~--------------------   90 (411)
                      ..++.+.+. ...-++++++|.||+. ||+.|....+.+.++.+.+.+ ++.++.|..+.                    
T Consensus        16 ~~~~G~~~~-l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D   94 (154)
T PRK09437         16 PDQDGEQVS-LTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSD   94 (154)
T ss_pred             eCCCCCEEe-HHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence            344444444 2223578999999976 688899999999999888865 47777776642                    


Q ss_pred             -cHhHHHhcCCCcc------------cEEEEEe-CCCCCcccCCCCCcch
Q 015217           91 -HQSLAQEYGIRGF------------PTIKVFV-PGKPPVDYQGARDVKP  126 (411)
Q Consensus        91 -~~~~~~~~~i~~~------------P~~~~~~-~g~~~~~~~g~~~~~~  126 (411)
                       ...+.++||+...            |+.++++ +|+....|.|....+.
T Consensus        95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~  144 (154)
T PRK09437         95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH  144 (154)
T ss_pred             CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence             2356777787653            5556664 5665667777655444

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.89  E-value=0.00017  Score=53.92  Aligned_cols=93  Identities=23%  Similarity=0.350  Sum_probs=71.5

Q ss_pred             EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCC-
Q 015217           34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPG-  112 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-  112 (411)
                      .++..+..+.+...+++++|-|+.++|.   .....+.++|..+++.+.|+.+.   +.++.+++++.. |++++|++. 
T Consensus         3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~   75 (97)
T cd02981           3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE   75 (97)
T ss_pred             ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc
Confidence            3444333324567889999999999887   56778999999998888998877   567778887754 888888764 


Q ss_pred             CCCcccCCCCCcchhHHHHHH
Q 015217          113 KPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      .....|.|..+.+.|.+|+..
T Consensus        76 ~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          76 EEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             cCCccCCCCCCHHHHHHHHHh
Confidence            446789999988999999863

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.89  E-value=0.00011  Score=53.69  Aligned_cols=73  Identities=19%  Similarity=0.346  Sum_probs=58.6

Q ss_pred             eHHHHHHHHHHhhcC-ccEEEEecCCCch----hhHHHhCCCCCCCCeEEEeecCCCc--cccCCCC---CChhHHHHHH
Q 015217          296 YLEMLLSVAEKFKRG-HYSFVWAAAGKQP----DLENRVGVGGYGYPALVALNVKKGV--YTPLKSA---FELEHIVEFV  365 (411)
Q Consensus       296 ~~~~~~~~a~~~~~~-~~~f~~i~~~~~~----~~~~~f~~~~~~~P~l~v~~~~~~~--~~~~~~~---~~~~~i~~fi  365 (411)
                      ++++++++|+.+.+. .+.|+|||.++.|    -+-+.|+++- .-|.+.+++...+.  |...++.   -+.++|++||
T Consensus        38 Fl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl-~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~Wi  116 (120)
T cd03074          38 FLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL-FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWI  116 (120)
T ss_pred             HHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc-CCCceeeEecccccceeEecccccccCcHHHHHHHH
Confidence            789999999999976 4999999999886    4667888875 47999999977543  4334333   7899999999


Q ss_pred             HHHc
Q 015217          366 KEAG  369 (411)
Q Consensus       366 ~~~~  369 (411)
                      ++++
T Consensus       117 edVL  120 (120)
T cd03074         117 EDVL  120 (120)
T ss_pred             HhhC
Confidence            9875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.89  E-value=0.00012  Score=63.11  Aligned_cols=39  Identities=15%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             CCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEE
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAAL   86 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~v   86 (411)
                      +++.+|.|+...|+||..+++.+   ..+.+.+++++.+..+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~   78 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY   78 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence            56789999999999999999876   7888888765555443

>TIGR03137 AhpC peroxiredoxin

Probab=97.87  E-value=8.1e-05  Score=63.11  Aligned_cols=68  Identities=16%  Similarity=0.129  Sum_probs=51.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~   99 (411)
                      ++++++|.|| +.||+.|....+.+.++.+.+.+ .+.++.|.++.                         ...+++.||
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            5789999999 99999999999999999888864 45555555442                         236788889


Q ss_pred             CC------cccEEEEEe-CCCC
Q 015217          100 IR------GFPTIKVFV-PGKP  114 (411)
Q Consensus       100 i~------~~P~~~~~~-~g~~  114 (411)
                      +.      ..|+.+++. +|+.
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I  131 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVI  131 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEE
Confidence            86      458888886 4544

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.86  E-value=0.00029  Score=53.35  Aligned_cols=102  Identities=27%  Similarity=0.394  Sum_probs=75.0

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHH-HHhC--CCeEEEEEecc-----ccHhHHHhcCC-
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAA-TVLK--GVATVAALDAN-----EHQSLAQEYGI-  100 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~-~~~~--~~i~~~~vd~~-----~~~~~~~~~~i-  100 (411)
                      .....|+.-+|+ +++.+.+.++|.|=...  +-=+-+..+.+++ +...  +.+.++.|-+.     ++.+|+++|++ 
T Consensus         4 ~G~v~LD~~tFd-Kvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~   80 (126)
T PF07912_consen    4 KGCVPLDELTFD-KVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID   80 (126)
T ss_dssp             TTSEEESTTHHH-HHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred             Cceeeccceehh-heeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence            346789999999 78888999999996443  3334556777777 4433  47899988775     56799999999 


Q ss_pred             -CcccEEEEEeCC-CCCccc--CCCCCcchhHHHHHHH
Q 015217          101 -RGFPTIKVFVPG-KPPVDY--QGARDVKPIAEFALQQ  134 (411)
Q Consensus       101 -~~~P~~~~~~~g-~~~~~~--~g~~~~~~l~~~~~~~  134 (411)
                       ..+|.+.+|..+ ....+|  .|..+.++|..|+.++
T Consensus        81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen   81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred             cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence             578999999854 448888  8899999999999864

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PLN02412 probable glutathione peroxidase

Probab=97.86  E-value=0.00013  Score=60.63  Aligned_cols=43  Identities=14%  Similarity=0.216  Sum_probs=38.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..++++|.||++||+.|+...+.+.++.++|+++ +.+..|+++
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            3578999999999999999999999999999974 888888764

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.86  E-value=0.00016  Score=55.33  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             EeCccchhHHHhcCCCeEEEEE---ECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEeccccHhHHHhcCCCc----ccE
Q 015217           34 QLTPNNFKSKVLNANGVVLVEF---YAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEHQSLAQEYGIRG----FPT  105 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f---~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~----~P~  105 (411)
                      +++.++.. ... ..+..++++   |+..-..-..+...+.++|+.++ +++.|+.+|.++.....+.+|+..    .|+
T Consensus         3 ~~~~en~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~   80 (111)
T cd03073           3 HRTKDNRA-QFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPV   80 (111)
T ss_pred             eeccchHH-Hhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence            45666666 332 333333332   23344555678899999999999 799999999998888899999984    999


Q ss_pred             EEEEeCCCCCcccCCCC-CcchhHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGAR-DVKPIAEFALQQ  134 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~-~~~~l~~~~~~~  134 (411)
                      +++...+.......+.. +.++|.+|+.+.
T Consensus        81 ~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          81 VAIRTAKGKKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             EEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence            99987433223346677 888999998754

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.85  E-value=9.5e-05  Score=61.98  Aligned_cols=55  Identities=16%  Similarity=0.091  Sum_probs=42.4

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      ..++++.+. ...-+++++||.|||+||+.|++ .+.|+++.+.+++ .+.+..+.|+
T Consensus        11 ~~~~G~~v~-Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         11 TTIDGEVTT-LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             ECCCCCEEe-HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            344544444 22235899999999999999974 8899999999975 5888899885

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.83  E-value=9.3e-05  Score=65.01  Aligned_cols=87  Identities=18%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-----------HhHHHhcCCCcccEEEEEeCCCC-
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-----------QSLAQEYGIRGFPTIKVFVPGKP-  114 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-----------~~~~~~~~i~~~P~~~~~~~g~~-  114 (411)
                      .++..+|+||.+.|+.|+++.|.+..+++.+.  +.+..|+.|..           ...++++|+..+|++++...+.. 
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~  226 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK  226 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence            46699999999999999999999999999875  45555555432           46889999999999999976533 


Q ss_pred             -CcccCCCCCcchhHHHHHHHH
Q 015217          115 -PVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       115 -~~~~~g~~~~~~l~~~~~~~~  135 (411)
                       .-.-.|..+.++|.+-+....
T Consensus       227 ~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       227 MSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EEEEeeccCCHHHHHHHHHHHH
Confidence             223468999999988877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.82  E-value=7.9e-05  Score=54.23  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcC--CCcccEEEEEeCCCCCcccCCCCCc
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYG--IRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      -++.|+.+||++|++....++++...+ ..+.+..+|.+.+    .++.+..+  ...+|++++  +|+.+.      ..
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~   72 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC   72 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence            478999999999999999999998765 3578888888764    24555555  478999754  665422      33


Q ss_pred             chhHHHHHHH
Q 015217          125 KPIAEFALQQ  134 (411)
Q Consensus       125 ~~l~~~~~~~  134 (411)
                      +++.+++.++
T Consensus        73 ~~~~~~~~~~   82 (85)
T PRK11200         73 TDFEAYVKEN   82 (85)
T ss_pred             HHHHHHHHHh
Confidence            5566666544

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.81  E-value=5.3e-05  Score=59.62  Aligned_cols=83  Identities=20%  Similarity=0.346  Sum_probs=50.6

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc---CCCcccEEEEEeC
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKVFVP  111 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~  111 (411)
                      ++++..........+..++.|+.+||+.|...-|.+.++++..+ .+.+-.+--+++.++..+|   |...+|++++++.
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence            34443332223456678999999999999999999999999865 5666666667777766654   7889999999965


Q ss_pred             C-CCCccc
Q 015217          112 G-KPPVDY  118 (411)
Q Consensus       112 g-~~~~~~  118 (411)
                      + +.+.++
T Consensus       107 ~~~~lg~w  114 (129)
T PF14595_consen  107 DGKELGRW  114 (129)
T ss_dssp             T--EEEEE
T ss_pred             CCCEeEEE
Confidence            4 444444

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.80  E-value=9.4e-05  Score=61.67  Aligned_cols=81  Identities=12%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEE------EEEeCCC-----------------------------c
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL------GHVDCDS-----------------------------E  221 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f------~~v~~~~-----------------------------~  221 (411)
                      ..++.+|.||+.||++|+.-.|.+.+++..   .+.+      ..||.++                             +
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~  134 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK  134 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence            378999999999999999999999999653   1233      3334332                             3


Q ss_pred             hhHHhhCccccccEE-EEEcCCCCCcccccCCCCHHHHHH
Q 015217          222 KSLMSKFNVQGFPTI-LVFGADKDSPIPYEGARTAGAIES  260 (411)
Q Consensus       222 ~~l~~~~~v~~~P~i-~~~~~~~~~~~~y~g~~~~~~i~~  260 (411)
                      ..+...||+...|+. +++..++.....+.|..+.+++..
T Consensus       135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence            345668888999777 788777776778889988887766

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.77  E-value=0.00011  Score=59.40  Aligned_cols=57  Identities=18%  Similarity=0.261  Sum_probs=45.1

Q ss_pred             CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---HhHHHhcCCCccc
Q 015217           47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFP  104 (411)
Q Consensus        47 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P  104 (411)
                      ++++++|.||+.| |++|+...+.+.++.+.++ ++.++.|+.+..   .++.+++++..+|
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~   85 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT   85 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence            5789999999999 6999999999999999986 578888888743   3445555654555

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.77  E-value=6.3e-05  Score=54.58  Aligned_cols=55  Identities=24%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----hHHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~l~~~~~v~~~P~i~~  238 (411)
                      ++.|+++||++|+...+.+.++.  ....+.+..++.+.+.     .+.+.+|+..+|++++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i   60 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI   60 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            47899999999999999999877  3344677777765433     2666778889999864

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.76  E-value=0.00017  Score=59.07  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDC  218 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~  218 (411)
                      ..++++|.|+++||++|....+.+.++.+.+.+ .+.+..|++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            356789999999999999999999999999986 588888876

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.73  E-value=0.0002  Score=55.02  Aligned_cols=67  Identities=22%  Similarity=0.493  Sum_probs=46.2

Q ss_pred             cCCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-----cH--hHHH--hcCCCcccEEEEE
Q 015217           46 NANGVVLVEFYAP-------WCGHCQALTPIWEKAATVLKGVATVAALDANE-----HQ--SLAQ--EYGIRGFPTIKVF  109 (411)
Q Consensus        46 ~~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-----~~--~~~~--~~~i~~~P~~~~~  109 (411)
                      .++++++|+|+++       ||+.|....|.+.++....+++..++.+.+..     ++  .+-.  ++++.++||++-+
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~   96 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW   96 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence            3568899999865       99999999999999998877777887777642     22  2333  4899999999888


Q ss_pred             eCC
Q 015217          110 VPG  112 (411)
Q Consensus       110 ~~g  112 (411)
                      ..+
T Consensus        97 ~~~   99 (119)
T PF06110_consen   97 ETG   99 (119)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            655

; PDB: 1V9W_A 1WOU_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.73  E-value=0.00032  Score=61.67  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---------chhHHhhCccccccEEEEEcCCCCCccc
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------EKSLMSKFNVQGFPTILVFGADKDSPIP  248 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------~~~l~~~~~v~~~P~i~~~~~~~~~~~~  248 (411)
                      ++..+++||...|++|+.+.|++...++.++=.+..+.+|...         +...++++|+..+|++++...+......
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p  229 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP  229 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence            4478999999999999999999999999997444444444331         2568999999999999999766433322


Q ss_pred             -ccCCCCHHHHHHHHHHHh
Q 015217          249 -YEGARTAGAIESFALEQL  266 (411)
Q Consensus       249 -y~g~~~~~~i~~fi~~~~  266 (411)
                       -.|..+.++|.+-+....
T Consensus       230 v~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       230 LAYGFISQDELKERILNVL  248 (256)
T ss_pred             EeeccCCHHHHHHHHHHHH
Confidence             258889999887766554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.72  E-value=9.7e-05  Score=64.71  Aligned_cols=80  Identities=26%  Similarity=0.446  Sum_probs=58.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE----------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL----------------------------------------   86 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v----------------------------------------   86 (411)
                      .++..++.|+-+.|++|+++++++.++.+.  + +.+..+                                        
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            356789999999999999999998887541  1 222111                                        


Q ss_pred             ----eccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217           87 ----DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        87 ----d~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                          +.+++.++++++||+++|+++ +.+|+.   ..|..+.+.|.+++.+
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~  229 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDE  229 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHH
Confidence                112334889999999999986 666753   4788899999888864

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.72  E-value=0.00018  Score=62.83  Aligned_cols=89  Identities=18%  Similarity=0.096  Sum_probs=67.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---------cHhHHHhcCCCcccEEEEEeCCCC--C
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------HQSLAQEYGIRGFPTIKVFVPGKP--P  115 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~g~~--~  115 (411)
                      .++..|++||.+.|+.|.++.|.+..+++.+.=.+..+.+|-.-         +...++++||..+|++++...+..  .
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~  221 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR  221 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence            46699999999999999999999999999886444445554421         334678999999999999976542  2


Q ss_pred             cccCCCCCcchhHHHHHHHH
Q 015217          116 VDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       116 ~~~~g~~~~~~l~~~~~~~~  135 (411)
                      -.-.|..+.++|.+-+....
T Consensus       222 pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        222 PLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EEeeccCCHHHHHHHHHHHH
Confidence            33468889888887776553

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.72  E-value=0.00023  Score=57.94  Aligned_cols=41  Identities=12%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             CeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           49 GVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        49 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      ++++|.|| ++||+.|....+.+.++.+.+++ ++.++.|..+
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d   71 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD   71 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence            77777777 89999999999999999998864 5777777654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.72  E-value=0.00013  Score=59.61  Aligned_cols=41  Identities=12%  Similarity=0.183  Sum_probs=36.2

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD  219 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~  219 (411)
                      .++++|.||++||+ |....+.+.++.++|++ .+.+..|+++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            57899999999999 99999999999999986 4888888753

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.72  E-value=0.00017  Score=51.26  Aligned_cols=54  Identities=22%  Similarity=0.465  Sum_probs=39.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhh-----CccccccEEEEEcCC
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK-----FNVQGFPTILVFGAD  242 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~-----~~v~~~P~i~~~~~~  242 (411)
                      +++|+++||++|+.+.+.+.++.      +.+..+|.+.+......     +++.++|+++ +.++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g   60 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK-FADG   60 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCC
Confidence            57899999999999999887653      34456777766655555     3888999974 4443

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.71  E-value=0.00022  Score=57.40  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEecc
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLK-GVATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~   89 (411)
                      .+++++|.|| +.||+.|....+.+.++.+.++ +.+.++.|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6889999999 7899999999999999999885 35777777665

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.67  E-value=0.00016  Score=58.37  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEecc
Q 015217           47 ANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKG----VATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~i~~~~vd~~   89 (411)
                      ++++++|.||++||+. |....+.+.++.+.+.+    ++.++.|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            6889999999999998 99999999999998875    3888877764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.64  E-value=0.00054  Score=52.88  Aligned_cols=92  Identities=5%  Similarity=0.003  Sum_probs=66.2

Q ss_pred             HhcCCCeEEEEEeCC----CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEEc---CCCC
Q 015217          174 VLKSKDLWIVEFFAP----WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFG---ADKD  244 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~----~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~---~~~~  244 (411)
                      ..++.+..+|+++++    ||..|+.... =.++.+.++.++.+...|.+..  ..++..+++.++|++.++.   +..+
T Consensus        13 ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~   91 (116)
T cd02991          13 AKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT   91 (116)
T ss_pred             HHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence            456678999999999    7777754421 1455555666777777776543  4688899999999999993   2222


Q ss_pred             CcccccCCCCHHHHHHHHHHHh
Q 015217          245 SPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       245 ~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ...+..|..+++++...+....
T Consensus        92 vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          92 IVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHH
Confidence            3456789999999988877654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.64  E-value=0.00031  Score=50.86  Aligned_cols=93  Identities=24%  Similarity=0.354  Sum_probs=75.2

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCC----ccc-EEEEEe
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIR----GFP-TIKVFV  110 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~----~~P-~~~~~~  110 (411)
                      .+|. .++.....++|.|..+.-..- .....+.++|+..+|.=.++-|||.+  ...+|+++.+.    --| .+.-|.
T Consensus        10 KdfK-KLLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK   87 (112)
T cd03067          10 KDFK-KLLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK   87 (112)
T ss_pred             HHHH-HHHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence            6788 677778888888887765444 44458899999999987888999986  77899999998    444 466778


Q ss_pred             CCCCCcccCCCCCcchhHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      +|..-..|.-..+..+|+.|+.
T Consensus        88 dG~fHkdYdR~~t~kSmv~Flr  109 (112)
T cd03067          88 DGDFHTEYNRQLTFKSMVAFLR  109 (112)
T ss_pred             CCCccccccchhhHHHHHHHhh
Confidence            8988889999999999998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.63  E-value=0.00037  Score=54.70  Aligned_cols=67  Identities=19%  Similarity=0.486  Sum_probs=53.2

Q ss_pred             CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc---------------------hhHHhhCccc--
Q 015217          177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE---------------------KSLMSKFNVQ--  231 (411)
Q Consensus       177 ~~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~---------------------~~l~~~~~v~--  231 (411)
                      .+++.+|.||.. ||+.|....+.+.++...++. .+.+..|+.+..                     ..+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            457899999998 999999999999999999987 488888876543                     2366667776  


Q ss_pred             ----cccEEEEEcCCC
Q 015217          232 ----GFPTILVFGADK  243 (411)
Q Consensus       232 ----~~P~i~~~~~~~  243 (411)
                          .+|+++++..++
T Consensus       104 ~~~~~~p~~~lid~~g  119 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDG  119 (124)
T ss_dssp             TTSEESEEEEEEETTS
T ss_pred             cCCceEeEEEEECCCC
Confidence                677777776655

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.60  E-value=0.00082  Score=51.12  Aligned_cols=97  Identities=19%  Similarity=0.272  Sum_probs=67.2

Q ss_pred             cEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          162 SIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       162 v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      +..+++ +++..++.......+|.|+...-   ......|.++|..++..+.|+...   +..+.+++++.. |.+++|+
T Consensus         2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~---~~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~r   74 (107)
T cd03068           2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEE---DPAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQ   74 (107)
T ss_pred             ceEcCCHHHHHHHHhcCCCEEEEEEECCCC---CHHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEEC
Confidence            344544 44555443332677777776532   257889999999999999998744   567888888875 8888883


Q ss_pred             ------CCCCCcccccCC-CCHHH-HHHHHHHH
Q 015217          241 ------ADKDSPIPYEGA-RTAGA-IESFALEQ  265 (411)
Q Consensus       241 ------~~~~~~~~y~g~-~~~~~-i~~fi~~~  265 (411)
                            .-.+....|.|. .+..+ |.+|++.|
T Consensus        75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence                  333446788887 67656 99998754

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.60  E-value=0.0005  Score=60.12  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=67.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---------chhHHhhCccccccEEEEEcCCCCCccc
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------EKSLMSKFNVQGFPTILVFGADKDSPIP  248 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------~~~l~~~~~v~~~P~i~~~~~~~~~~~~  248 (411)
                      +...+++||.+.|++|+.+.|++...++.++=.+..+.+|...         +...++++|+..+|++++...+......
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p  222 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP  222 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence            3467999999999999999999999999997555555555321         3457789999999999999766533322


Q ss_pred             -ccCCCCHHHHHHHHHHHh
Q 015217          249 -YEGARTAGAIESFALEQL  266 (411)
Q Consensus       249 -y~g~~~~~~i~~fi~~~~  266 (411)
                       -.|..+.++|.+-+....
T Consensus       223 v~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        223 LSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EeeccCCHHHHHHHHHHHH
Confidence             257888888877665543

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.59  E-value=0.00032  Score=56.39  Aligned_cols=81  Identities=16%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------chhHHhhCccccc-
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------EKSLMSKFNVQGF-  233 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------~~~l~~~~~v~~~-  233 (411)
                      .++++|.|| +.||+.|....+.+.++...+.. .+.+..|..+.                     +..+++.||+... 
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  102 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK  102 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            567888888 58999999999999999988875 46666665443                     2345666666665 


Q ss_pred             --------cEEEEEcCCCCCcccccCCCCHHHH
Q 015217          234 --------PTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       234 --------P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                              |+.+++..++.....+.|....+++
T Consensus       103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~  135 (140)
T cd03017         103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA  135 (140)
T ss_pred             ccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence                    6777776555555556665544443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.57  E-value=0.00077  Score=48.85  Aligned_cols=94  Identities=19%  Similarity=0.329  Sum_probs=70.2

Q ss_pred             cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccc----cccE-EEEEc
Q 015217          168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQ----GFPT-ILVFG  240 (411)
Q Consensus       168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~----~~P~-i~~~~  240 (411)
                      .+|..+ .+..+.++|+|..+.- .-......|.++|....+.-.++.|||.+  .+.||+++.+.    .-|. +.-|+
T Consensus        10 KdfKKL-LRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK   87 (112)
T cd03067          10 KDFKKL-LRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK   87 (112)
T ss_pred             HHHHHH-HhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence            566664 5556667777776542 22455678999999999999999999987  67899999988    4454 44455


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHH
Q 015217          241 ADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      +| .-+..|+-..+..+|++|++.
T Consensus        88 dG-~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          88 DG-DFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             CC-CccccccchhhHHHHHHHhhC
Confidence            54 457888888999999999763

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.54  E-value=0.00031  Score=52.64  Aligned_cols=91  Identities=16%  Similarity=0.247  Sum_probs=64.9

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .....++.++++ ..+......+++|....  ++.+....-.+-++.+.+.+.+..+.+.-..+..+..+||+..+|+++
T Consensus         9 ~g~~~vd~~~ld-~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv   87 (107)
T PF07449_consen    9 HGWPRVDADTLD-AFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV   87 (107)
T ss_dssp             -TEEEE-CCCHH-HHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred             cCCeeechhhHH-HHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence            456788888888 55565666655555433  344444555788888888898888888888889999999999999999


Q ss_pred             EEeCCCCCcccCCC
Q 015217          108 VFVPGKPPVDYQGA  121 (411)
Q Consensus       108 ~~~~g~~~~~~~g~  121 (411)
                      ++++|+.+....|-
T Consensus        88 f~R~g~~lG~i~gi  101 (107)
T PF07449_consen   88 FFRDGRYLGAIEGI  101 (107)
T ss_dssp             EEETTEEEEEEESS
T ss_pred             EEECCEEEEEecCe
Confidence            99999764444443

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.54  E-value=0.00014  Score=62.24  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=53.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE----------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL----------------------------------------   86 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v----------------------------------------   86 (411)
                      .++..++.|+.+.|++|+++++.+.+    ..+++.+..+                                        
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            45789999999999999999998876    1222222111                                        


Q ss_pred             -----eccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHH
Q 015217           87 -----DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF  130 (411)
Q Consensus        87 -----d~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~  130 (411)
                           +.+++..+++++||+++|+++ +.+|..   ..|..+.+.|.++
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~  196 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEAL  196 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhh
Confidence                 112344789999999999986 776653   4677776666654

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.53  E-value=0.00084  Score=56.72  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             CC-eEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          178 KD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       178 ~~-~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      .+ ++++.++++||++|+...|.+.++.+.|+++ +.+..|+++
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            44 4456679999999999999999999999874 888888764

>KOG3414 consensus Component of the U4/U6

Probab=97.52  E-value=0.00065  Score=51.26  Aligned_cols=77  Identities=18%  Similarity=0.351  Sum_probs=66.6

Q ss_pred             cchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           38 NNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        38 ~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ...++.+. ...+.++|.|...|.+.|.++...+.++++...+-..++-+|.++-+.+.+-|++...|++++|-+++-
T Consensus        12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH   89 (142)
T KOG3414|consen   12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH   89 (142)
T ss_pred             HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence            34454443 356799999999999999999999999999999877888999999999999999999999999977654

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK15000 peroxidase; Provisional

Probab=97.51  E-value=0.00068  Score=58.00  Aligned_cols=86  Identities=10%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      +++++++.||+. ||+.|....+.+.+..++++. ++.++.|.++.                            ...+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            578999999995 899999999999999999874 46666665541                            225677


Q ss_pred             hcCCC------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHH
Q 015217           97 EYGIR------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFAL  132 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~  132 (411)
                      .||+.      ..|+.+++.+ |.....+.+.    ++.+++.+.+.
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~  159 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD  159 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            78887      6899888874 5433333333    34445555543

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.50  E-value=0.00019  Score=56.46  Aligned_cols=79  Identities=23%  Similarity=0.448  Sum_probs=48.7

Q ss_pred             eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC---ccccccEEEEEcC
Q 015217          165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF---NVQGFPTILVFGA  241 (411)
Q Consensus       165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~---~v~~~P~i~~~~~  241 (411)
                      ++++..........+..++.|..+|||.|....|.+.++++... .+.+-.+.-+.+.++..+|   |...+|+++++..
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence            44444444323345578888999999999999999999999854 5666666666677777765   5678999999966


Q ss_pred             CCC
Q 015217          242 DKD  244 (411)
Q Consensus       242 ~~~  244 (411)
                      +++
T Consensus       107 ~~~  109 (129)
T PF14595_consen  107 DGK  109 (129)
T ss_dssp             T--
T ss_pred             CCC
Confidence            544

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.50  E-value=0.0008  Score=56.77  Aligned_cols=86  Identities=15%  Similarity=0.098  Sum_probs=60.3

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-------------------------ccHhHHHhcC
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN-------------------------EHQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-------------------------~~~~~~~~~~   99 (411)
                      +++++++.|| +.||+.|....+.+.+..+++.+ ++.+..|..+                         .+..+++.||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            4678999999 99999999999999999998864 4556555543                         2347888999


Q ss_pred             CC----cc--cEEEEEeC-CCCCccc----CCCCCcchhHHHHH
Q 015217          100 IR----GF--PTIKVFVP-GKPPVDY----QGARDVKPIAEFAL  132 (411)
Q Consensus       100 i~----~~--P~~~~~~~-g~~~~~~----~g~~~~~~l~~~~~  132 (411)
                      +.    +.  |+.++++. |+....+    ...++.+++.+.+.
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~  153 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK  153 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            83    56  88888864 4432222    22345666666654

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.47  E-value=0.00068  Score=60.19  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec---------------------------------------
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA---------------------------------------   88 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~---------------------------------------   88 (411)
                      .+.+++.|+-+.|++|+++++.+..+.+.  +++.+..+-.                                       
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            45789999999999999999998876653  3333321110                                       


Q ss_pred             -----------cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217           89 -----------NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        89 -----------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                                 +++.++.+++|++++|++++-+..+.+....|..+++.|.+.+
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l  248 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIM  248 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence                       0122578889999999986655323345678888888777765

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.44  E-value=0.00083  Score=57.67  Aligned_cols=88  Identities=16%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             CCCeEE-EEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---------------------------ccHhHHHh
Q 015217           47 ANGVVL-VEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQE   97 (411)
Q Consensus        47 ~~~~~~-v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---------------------------~~~~~~~~   97 (411)
                      +++.++ +.|++.||+.|....+.+.+..+.+++ ++.+..|.++                           .+..+++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            456544 468999999999999999999988874 4556665554                           12367888


Q ss_pred             cCCC------cccEEEEEeCCCCCc-c--c--CCCCCcchhHHHHHHH
Q 015217           98 YGIR------GFPTIKVFVPGKPPV-D--Y--QGARDVKPIAEFALQQ  134 (411)
Q Consensus        98 ~~i~------~~P~~~~~~~g~~~~-~--~--~g~~~~~~l~~~~~~~  134 (411)
                      ||+.      .+|+.+++.+++.+. .  |  .+.++.+++.+.+...
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            8884      589988887544321 1  1  3456777777666543

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.00076  Score=50.57  Aligned_cols=65  Identities=18%  Similarity=0.395  Sum_probs=52.4

Q ss_pred             CCCeEEEEEECC--------CChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-------hHHHhcCC-CcccEEEEEe
Q 015217           47 ANGVVLVEFYAP--------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-------SLAQEYGI-RGFPTIKVFV  110 (411)
Q Consensus        47 ~~~~~~v~f~~~--------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i-~~~P~~~~~~  110 (411)
                      +++-++|+|+++        ||+.|.+..|.+.++.+....++.|+.++..+-+       .+-...++ .++||+.=+.
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~  103 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK  103 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence            556699999875        8999999999999999987888999999886432       45556666 8999987776


Q ss_pred             C
Q 015217          111 P  111 (411)
Q Consensus       111 ~  111 (411)
                      .
T Consensus       104 ~  104 (128)
T KOG3425|consen  104 R  104 (128)
T ss_pred             C
Confidence            4

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.42  E-value=0.0019  Score=48.72  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=64.7

Q ss_pred             ceEeCChhHHHHhcC-CccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEee
Q 015217          275 VTELTSQDVMEEKCG-SAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALN  343 (411)
Q Consensus       275 v~~l~~~~~~~~~~~-~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~  343 (411)
                      +..+++.+.++.+.. ...+++          ..+.|..+|..+|+. +.|+...+   ..+...+++.   .|.+++++
T Consensus         2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d-~~F~~~~~---~~~~~~~~~~---~~~i~l~~   74 (102)
T cd03066           2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPY-IKFFATFD---SKVAKKLGLK---MNEVDFYE   74 (102)
T ss_pred             ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcC-CEEEEECc---HHHHHHcCCC---CCcEEEeC
Confidence            355666666676665 444333          347999999999988 89987776   6777888765   78899987


Q ss_pred             cCCCccccC-CCCCChhHHHHHHHHH
Q 015217          344 VKKGVYTPL-KSAFELEHIVEFVKEA  368 (411)
Q Consensus       344 ~~~~~~~~~-~~~~~~~~i~~fi~~~  368 (411)
                      ........| .|.++.+.|.+||...
T Consensus        75 ~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          75 PFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            545555668 7889999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.36  E-value=0.0019  Score=53.26  Aligned_cols=81  Identities=25%  Similarity=0.379  Sum_probs=61.4

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEeccc--c-------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDANE--H-------------------------------   91 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~i~~~~vd~~~--~-------------------------------   91 (411)
                      ..+++|+.|+...|++|+.+++.+.++.+.+  .+++.+...+.-.  .                               
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4678999999999999999999999999998  6777776664410  0                               


Q ss_pred             -----------------------------------HhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217           92 -----------------------------------QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        92 -----------------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                                                         .+.++++||.++|++++  +|+.   +.|..+.+.+.++|.
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id  161 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELID  161 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHc
Confidence                                               05567789999999877  6654   477888888877765

...

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.36  E-value=0.001  Score=51.08  Aligned_cols=66  Identities=20%  Similarity=0.434  Sum_probs=46.2

Q ss_pred             CCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHh--hCccccccEEEEEc
Q 015217          177 SKDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMS--KFNVQGFPTILVFG  240 (411)
Q Consensus       177 ~~~~~lv~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~l~~--~~~v~~~P~i~~~~  240 (411)
                      +.++.+|+|++       +|||.|....|.+.++-........+..|.....+       ....  ++++..+||++-+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~   97 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE   97 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence            45688888885       59999999999999998887777888888765432       2444  58999999999986


Q ss_pred             CC
Q 015217          241 AD  242 (411)
Q Consensus       241 ~~  242 (411)
                      .+
T Consensus        98 ~~   99 (119)
T PF06110_consen   98 TG   99 (119)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

; PDB: 1V9W_A 1WOU_A.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.35  E-value=0.001  Score=44.63  Aligned_cols=51  Identities=20%  Similarity=0.430  Sum_probs=38.8

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEE
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKV  108 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  108 (411)
                      ++.|+.+||++|+.....|.+      .++.+..+|.+.+++    +.+..|...+|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            578999999999999888832      236778888886643    444459999999765

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.33  E-value=0.00083  Score=46.92  Aligned_cols=51  Identities=20%  Similarity=0.415  Sum_probs=37.4

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHh----cCCCcccEEEE
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE----YGIRGFPTIKV  108 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~----~~i~~~P~~~~  108 (411)
                      ++.|+++||++|.++...+.+.      .+.+..+|.+.+....+.    .+..++|++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            5789999999999988777652      356667777765544333    37889999865

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.31  E-value=0.0015  Score=53.31  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=28.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLK   78 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~   78 (411)
                      ..++.++.|+.++|++|+.+.+.+.++...+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            46789999999999999999999999877654

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.30  E-value=0.011  Score=58.80  Aligned_cols=166  Identities=13%  Similarity=0.113  Sum_probs=106.1

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                      .+.+++|.. .|+.|.++...+++++..- +++.+...+   ..        ...|++.+.+++....++|.|-..-.++
T Consensus        20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~~i~~~~~~---~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef   86 (517)
T PRK15317         20 PIELVASLD-DSEKSAELKELLEEIASLS-DKITVEEDS---LD--------VRKPSFSITRPGEDTGVRFAGIPMGHEF   86 (517)
T ss_pred             CEEEEEEeC-CCchHHHHHHHHHHHHHhC-CceEEEEcc---CC--------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence            344555555 7999999999999998774 566664422   11        2469999987666667999998888899


Q ss_pred             HHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccE-EE------eHH----HHHHHHHHhhcCccEEEEecCCCchhhHH
Q 015217          259 ESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAI-CF------YLE----MLLSVAEKFKRGHYSFVWAAAGKQPDLEN  327 (411)
Q Consensus       259 ~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~------~~~----~~~~~a~~~~~~~~~f~~i~~~~~~~~~~  327 (411)
                      ..|+...+.-....+.+.+-+ .+.+..+..+..+ .|      +++    .+.++|....  .+.+-.+|...++++++
T Consensus        87 ~s~i~~i~~~~~~~~~l~~~~-~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~  163 (517)
T PRK15317         87 TSLVLALLQVGGHPPKLDQEV-IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVE  163 (517)
T ss_pred             HHHHHHHHHhcCCCCCCCHHH-HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHH
Confidence            999887765443333331111 1223333333322 22      444    4444544333  48888999999999999


Q ss_pred             HhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHH
Q 015217          328 RVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE  367 (411)
Q Consensus       328 ~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~  367 (411)
                      ++++..  .|++++ +  +..  .+.|..+.+++.+.+..
T Consensus       164 ~~~v~~--VP~~~i-~--~~~--~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        164 ARNIMA--VPTVFL-N--GEE--FGQGRMTLEEILAKLDT  196 (517)
T ss_pred             hcCCcc--cCEEEE-C--CcE--EEecCCCHHHHHHHHhc
Confidence            999986  999987 2  222  35566666666655543

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.29  E-value=0.0012  Score=53.61  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchh
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKS  223 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~  223 (411)
                      +..++++|++.||+.|+...+.+.++.+.+.. .+.+..|+.+....
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~   70 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK   70 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence            44555555699999999999999999999975 48888888765543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.29  E-value=0.0009  Score=48.61  Aligned_cols=76  Identities=25%  Similarity=0.375  Sum_probs=55.0

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCc--cccccEEEEEcCCCCCcccccCCCC
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFN--VQGFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~--v~~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                      .++.|+.+||+.|+...+.+.+++..+ ..+.+..+|.+.+    .++.+..+  +..+|+|++   +++    +-|  .
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi---~g~----~ig--g   71 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV---DQK----HIG--G   71 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE---CCE----EEc--C
Confidence            478899999999999999999999765 3577777777654    24555555  478999875   221    123  3


Q ss_pred             HHHHHHHHHHHh
Q 015217          255 AGAIESFALEQL  266 (411)
Q Consensus       255 ~~~i~~fi~~~~  266 (411)
                      .+++.++...++
T Consensus        72 ~~~~~~~~~~~~   83 (85)
T PRK11200         72 CTDFEAYVKENL   83 (85)
T ss_pred             HHHHHHHHHHhc
Confidence            578888887765

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.28  E-value=0.00064  Score=48.84  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCC--CCCcccCCCCCcchhHH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPG--KPPVDYQGARDVKPIAE  129 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g--~~~~~~~g~~~~~~l~~  129 (411)
                      +++|+.++|.-|..+...+..+....  .+.+-.||++.++++..+|+. .+|.+.+-..+  .......+..+.+.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~   78 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA   78 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence            78999999999999999888866543  488999999999999999995 79996552211  11344556788888888


Q ss_pred             HHH
Q 015217          130 FAL  132 (411)
Q Consensus       130 ~~~  132 (411)
                      |++
T Consensus        79 ~L~   81 (81)
T PF05768_consen   79 WLE   81 (81)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            764

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0031  Score=53.23  Aligned_cols=80  Identities=14%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR  253 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~  253 (411)
                      +....+..++.|++.||..|+.+..++..++..+ ..+.|...+.+..++++..+.+...|..+.+..+.. ..+..|..
T Consensus        13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~-v~~l~~~~   90 (227)
T KOG0911|consen   13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK-VDRLSGAD   90 (227)
T ss_pred             HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh-hhhhhccC
Confidence            3446678899999999999999999999999999 679999999999999999999999999999865442 44555544


Q ss_pred             CH
Q 015217          254 TA  255 (411)
Q Consensus       254 ~~  255 (411)
                      ..
T Consensus        91 ~~   92 (227)
T KOG0911|consen   91 PP   92 (227)
T ss_pred             cH
Confidence            43

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.27  E-value=0.00078  Score=49.04  Aligned_cols=73  Identities=21%  Similarity=0.224  Sum_probs=50.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcCC--CcccEEEEEeCCCCCcccCCCCCcc
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGI--RGFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i--~~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      ++.|+.+||++|.+....|.++..... .+.+..+|.+.+    .++.+..|-  ..+|++++  +|+.+      ...+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------gG~~   72 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------GGCT   72 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------cCHH
Confidence            688999999999999999988875543 366777777643    356666664  78999754  55431      2335


Q ss_pred             hhHHHHHH
Q 015217          126 PIAEFALQ  133 (411)
Q Consensus       126 ~l~~~~~~  133 (411)
                      +|.++..+
T Consensus        73 dl~~~~~~   80 (86)
T TIGR02183        73 DFEQLVKE   80 (86)
T ss_pred             HHHHHHHh
Confidence            66666654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.26  E-value=0.0016  Score=52.84  Aligned_cols=106  Identities=15%  Similarity=0.226  Sum_probs=66.5

Q ss_pred             CCcEEeCc--cchHHHHhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCCCchhHHhhC------
Q 015217          160 NESIELNS--SNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMSKF------  228 (411)
Q Consensus       160 ~~v~~l~~--~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~l~~~~------  228 (411)
                      .+|....-  +.+.. ..+.+++.+|.++.+||..|+.+.. .|  .++|..+..++.-+.||.++.+++...|      
T Consensus        18 ~~V~W~~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~   96 (163)
T PF03190_consen   18 NPVNWQPWGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQA   96 (163)
T ss_dssp             SSS--B-SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHH
Confidence            44444443  44554 4777899999999999999999976 55  7888888888888999999999988887      


Q ss_pred             --ccccccEEEEEcCCCCCcc---ccc------CCCCHHHHHHHHHHHhh
Q 015217          229 --NVQGFPTILVFGADKDSPI---PYE------GARTAGAIESFALEQLE  267 (411)
Q Consensus       229 --~v~~~P~i~~~~~~~~~~~---~y~------g~~~~~~i~~fi~~~~~  267 (411)
                        |..+.|+.+++.+.+. ++   .|-      |.....++..-|.+.|.
T Consensus        97 ~~~~gGwPl~vfltPdg~-p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~  145 (163)
T PF03190_consen   97 MSGSGGWPLTVFLTPDGK-PFFGGTYFPPEDRYGRPGFLQLLERIAELWK  145 (163)
T ss_dssp             HHS---SSEEEEE-TTS--EEEEESS--SS-BTTB--HHHHHHHHHHHHH
T ss_pred             hcCCCCCCceEEECCCCC-eeeeeeecCCCCCCCCccHHHHHHHHHHHHH
Confidence              6778999999977653 22   222      22345567777766664

; PDB: 3IRA_A.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.25  E-value=0.0023  Score=53.55  Aligned_cols=87  Identities=10%  Similarity=0.109  Sum_probs=58.5

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE----------------------------KSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~----------------------------~~l~~~  227 (411)
                      .+.++|.|| +.||+.|....+.+.++++.|.+ .+.+..|+++..                            ..+++.
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  108 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD  108 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence            478888998 79999999999999999999975 466666655432                            234555


Q ss_pred             Cccc------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHHH
Q 015217          228 FNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFALE  264 (411)
Q Consensus       228 ~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~  264 (411)
                      ||+.      ..|+.+++..++.....+.+    ..+.+++.+.|..
T Consensus       109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~  155 (173)
T cd03015         109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA  155 (173)
T ss_pred             hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            6664      35678888766644444422    2345566666644

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.21  E-value=0.00097  Score=47.99  Aligned_cols=56  Identities=25%  Similarity=0.463  Sum_probs=41.2

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----hHHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+++||++|+.+.+.+.++..    .+.+..++.+.+.     .+.+..|...+|+++  .+|+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence            588999999999999999888765    3456666665442     355567889999963  3554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR03137 AhpC peroxiredoxin

Probab=97.18  E-value=0.0029  Score=53.64  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHhhCcc
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------------EKSLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------------~~~l~~~~~v  230 (411)
                      .++++|.|| +.||+.|....+.+.++...|.+ .+.+..|+++.                         +..+++.||+
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv  110 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV  110 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence            568899999 99999999999999999998865 35555555432                         2356677777


Q ss_pred             c------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 015217          231 Q------GFPTILVFGADKDSPIPYEG----ARTAGAIESFAL  263 (411)
Q Consensus       231 ~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~  263 (411)
                      .      ..|+.+++..++.....+.+    ....+++.+.|.
T Consensus       111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            5      34888888655533332211    235666666653

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.18  E-value=0.0035  Score=52.10  Aligned_cols=42  Identities=14%  Similarity=0.282  Sum_probs=35.5

Q ss_pred             CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 015217          178 KDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDS  220 (411)
Q Consensus       178 ~~~~lv~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~  220 (411)
                      .++++|.||+.| |++|....+.+.++++.+. .+.+..|+.+.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~   86 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL   86 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence            568999999999 9999999999999999984 57777776554

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.15  E-value=0.0014  Score=46.79  Aligned_cols=59  Identities=19%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---HhHHHhcCCCcccEEEEEeCCC
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      +.+.-++.|+.+||++|++....|.+.      .+.+..+|++++   ..+.+..|...+|++++  +|+
T Consensus         5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~   66 (79)
T TIGR02190         5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK   66 (79)
T ss_pred             CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence            455668899999999999999888642      356666777655   34555678899999754  554

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.14  E-value=0.0015  Score=45.66  Aligned_cols=51  Identities=16%  Similarity=0.298  Sum_probs=39.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc---CCCcccEEEE
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKV  108 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~  108 (411)
                      +..|+.++|++|++....|++      ..+.+..+|+++++.....+   |...+|++++
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~   54 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA   54 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence            467899999999999988874      35677888888777555544   8889999754

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.13  E-value=0.0054  Score=53.08  Aligned_cols=68  Identities=15%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217           47 ANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE   97 (411)
Q Consensus        47 ~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~   97 (411)
                      .++. +|+.|++.||+.|....+.+.++...+.. ++.++.|.++.                           +..+++.
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            3554 57899999999999999999999999864 46666666653                           2357788


Q ss_pred             cCCC-------cccEEEEEeC-CCC
Q 015217           98 YGIR-------GFPTIKVFVP-GKP  114 (411)
Q Consensus        98 ~~i~-------~~P~~~~~~~-g~~  114 (411)
                      ||+.       ..|+++++.. |+.
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~I  131 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTI  131 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEE
Confidence            8873       5799888875 443

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.12  E-value=0.003  Score=47.12  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=56.7

Q ss_pred             ccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCC-cccEEEEE
Q 015217           37 PNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIR-GFPTIKVF  109 (411)
Q Consensus        37 ~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~-~~P~~~~~  109 (411)
                      .++++ .+++.  .++++|+=+++.|+-.......+++......+.+.++.+|.-+.+    .+++++||. ..|.++++
T Consensus         7 ~eql~-~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili   85 (105)
T PF11009_consen    7 EEQLE-EILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI   85 (105)
T ss_dssp             HHHHH-HHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred             HHHHH-HHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence            35666 44444  789999999999999999999999999988877899999998765    678999997 56999999


Q ss_pred             eCCCC
Q 015217          110 VPGKP  114 (411)
Q Consensus       110 ~~g~~  114 (411)
                      ++|+.
T Consensus        86 ~~g~~   90 (105)
T PF11009_consen   86 KNGKV   90 (105)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            99975

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.12  E-value=0.0026  Score=45.70  Aligned_cols=79  Identities=15%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC-CCcccccCCCCHHHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK-DSPIPYEGARTAGAIES  260 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~-~~~~~y~g~~~~~~i~~  260 (411)
                      +++|..+.|.-|......+..+.....  +.+-.||.++++.+..+|+. .+|.+.+-.... .......+.++.+.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~   78 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA   78 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence            688999999999999999988765544  88899999999999999996 589766522111 11334456788999988


Q ss_pred             HHH
Q 015217          261 FAL  263 (411)
Q Consensus       261 fi~  263 (411)
                      |+.
T Consensus        79 ~L~   81 (81)
T PF05768_consen   79 WLE   81 (81)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            863

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.12  E-value=0.004  Score=47.12  Aligned_cols=85  Identities=15%  Similarity=0.293  Sum_probs=60.1

Q ss_pred             eEeCChhHHHHhcCCccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecC
Q 015217          276 TELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK  345 (411)
Q Consensus       276 ~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~  345 (411)
                      .++++.+.++.+.....+++          ..+.|..+|..+|+. +.|+....   ..++..+++    .|.+++|+|.
T Consensus         3 ~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d-~~F~~~~~---~~~~~~~~~----~~~ivl~~p~   74 (104)
T cd03069           3 VELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRES-FRFAHTSD---KQLLEKYGY----GEGVVLFRPP   74 (104)
T ss_pred             cccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhc-CEEEEECh---HHHHHhcCC----CCceEEEech
Confidence            34555555555444333222          347899999999988 89988776   677788876    4678888652


Q ss_pred             ------CCccccCCCCCChhHHHHHHHHH
Q 015217          346 ------KGVYTPLKSAFELEHIVEFVKEA  368 (411)
Q Consensus       346 ------~~~~~~~~~~~~~~~i~~fi~~~  368 (411)
                            ......|+|.++.+.|.+||...
T Consensus        75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence                  24445689999999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.09  E-value=0.0016  Score=48.90  Aligned_cols=83  Identities=13%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCC--CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAP--WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~--~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .....++..++..++ ..+...+++|..+  .++.+....-++-++.+.|.+.+..+.+.-..+..+..+||+...|+++
T Consensus         9 ~g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv   87 (107)
T PF07449_consen    9 HGWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV   87 (107)
T ss_dssp             -TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred             cCCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence            467888999999975 4455555555543  2455566666899999999999988888867788999999999999999


Q ss_pred             EEcCCC
Q 015217          238 VFGADK  243 (411)
Q Consensus       238 ~~~~~~  243 (411)
                      +++++.
T Consensus        88 f~R~g~   93 (107)
T PF07449_consen   88 FFRDGR   93 (107)
T ss_dssp             EEETTE
T ss_pred             EEECCE
Confidence            999865

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.07  E-value=0.001  Score=54.45  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=68.8

Q ss_pred             CCcEEeC-ccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          160 NESIELN-SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       160 ~~v~~l~-~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ....++. ..+|.+... ...-+++.||-+.-..|+-+-..++.+|+.+-+ ..|..||....+-++.+++|.-+|++.+
T Consensus        66 G~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   66 GEYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             ceEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            3445555 567777543 445578899999888999999999999999775 8999999999999999999999999999


Q ss_pred             EcCCC
Q 015217          239 FGADK  243 (411)
Q Consensus       239 ~~~~~  243 (411)
                      |+++.
T Consensus       144 ~k~g~  148 (211)
T KOG1672|consen  144 FKNGK  148 (211)
T ss_pred             EEcCE
Confidence            98876

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.06  E-value=0.0037  Score=52.42  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=33.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEE
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA   84 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~   84 (411)
                      .+++.++.|+...|++|+.+++.+.++.+.+++++.+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            57899999999999999999999999998887665553

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.04  E-value=0.0026  Score=51.22  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=37.5

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcCC----eEEEEEeCCC
Q 015217          177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKGK----VKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~~~----~~f~~v~~~~  220 (411)
                      ..++++|.|+++||++ |....+.+.++...+..+    +.+..|+.+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            4578999999999998 999999999999999763    8888887653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.02  E-value=0.005  Score=54.57  Aligned_cols=86  Identities=10%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      +++++++.|| +.||+.|....+.+.+..+.+++ ++.++.|.+|.                            +.++++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            5667777777 89999999999999999998864 35555555442                            236788


Q ss_pred             hcCCC-----cccEEEEEe-CCCCCccc----CCCCCcchhHHHHH
Q 015217           97 EYGIR-----GFPTIKVFV-PGKPPVDY----QGARDVKPIAEFAL  132 (411)
Q Consensus        97 ~~~i~-----~~P~~~~~~-~g~~~~~~----~g~~~~~~l~~~~~  132 (411)
                      .||+.     ..|+.++++ +|+....+    ...++.+++.+.+.
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~  222 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD  222 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            89985     479988886 45432222    23345555555543

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.01  E-value=0.006  Score=46.97  Aligned_cols=74  Identities=24%  Similarity=0.407  Sum_probs=59.8

Q ss_pred             chhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE-EEEEeCCC
Q 015217           39 NFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT-IKVFVPGK  113 (411)
Q Consensus        39 ~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~-~~~~~~g~  113 (411)
                      ..++.+. +.++.++|.|...|-+.|.++...+.++++..+.-..++.+|.++-+.+.+-|.+. -|. ++||-.++
T Consensus        10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk   85 (133)
T PF02966_consen   10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK   85 (133)
T ss_dssp             HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred             hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence            3444443 46889999999999999999999999999999988899999999999999999999 674 66663443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>KOG3414 consensus Component of the U4/U6

Probab=97.01  E-value=0.0053  Score=46.49  Aligned_cols=67  Identities=19%  Similarity=0.336  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK  243 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~  243 (411)
                      ..+.+++-|..+|.+.|-.+-..+..++....+-..++-++.++-+++.+-|++...|++++|-++.
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k   88 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK   88 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence            4568999999999999999999999999999998888999999999999999999999999986554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.98  E-value=0.036  Score=55.08  Aligned_cols=168  Identities=17%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                      .+.++.|.. .|+.|.++...+++++..- +++.+...+.+          ....|++.+..++....++|.|-..-.++
T Consensus        20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g~Ef   87 (515)
T TIGR03140        20 PVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGGHEF   87 (515)
T ss_pred             CEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCcHHH
Confidence            344555655 6899999999999988764 56766443311          13469999987665557999998888888


Q ss_pred             HHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccE-EE------eHHH----HHHHHHHhhcCccEEEEecCCCchhhHH
Q 015217          259 ESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAI-CF------YLEM----LLSVAEKFKRGHYSFVWAAAGKQPDLEN  327 (411)
Q Consensus       259 ~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~------~~~~----~~~~a~~~~~~~~~f~~i~~~~~~~~~~  327 (411)
                      ..|+...+......+.+.+-+ .+.+..+..+..+ .|      +++.    +.++|....  .+..-.+|...++++++
T Consensus        88 ~s~i~~i~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~  164 (515)
T TIGR03140        88 TSLVLAILQVGGHGPKLDEGI-IDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVE  164 (515)
T ss_pred             HHHHHHHHHhcCCCCCCCHHH-HHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHH
Confidence            888887665443333331111 1223333333322 22      4444    444444433  47788899999999999


Q ss_pred             HhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHH
Q 015217          328 RVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEA  368 (411)
Q Consensus       328 ~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~  368 (411)
                      ++++..  .|.+++-   +..  .+.|..+.+++.+.+...
T Consensus       165 ~~~v~~--VP~~~i~---~~~--~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       165 ALGIQG--VPAVFLN---GEE--FHNGRMDLAELLEKLEET  198 (515)
T ss_pred             hcCCcc--cCEEEEC---CcE--EEecCCCHHHHHHHHhhc
Confidence            999986  9999872   222  255666666665555433

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.0045  Score=46.52  Aligned_cols=64  Identities=20%  Similarity=0.397  Sum_probs=51.0

Q ss_pred             CCeEEEEEeC--------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHhhCcc-ccccEEEEEcC
Q 015217          178 KDLWIVEFFA--------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMSKFNV-QGFPTILVFGA  241 (411)
Q Consensus       178 ~~~~lv~f~~--------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~l~~~~~v-~~~P~i~~~~~  241 (411)
                      ++..+|+|++        +|||.|....|.+.++-+....++.|.+|+..+-+       .+....++ ..+||++=+++
T Consensus        25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence            4457888885        59999999999999999988889999999876533       34555666 78899988764

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.94  E-value=0.0028  Score=43.93  Aligned_cols=54  Identities=22%  Similarity=0.347  Sum_probs=39.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+++||++|+.....+.+..      +.+..+|.+.+.+    +.+..+...+|++++  +|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            57899999999999998887664      5666778876553    344457788898643  554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.92  E-value=0.0025  Score=45.81  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=39.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-h----hHHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE-K----SLMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~-~----~l~~~~~v~~~P~i~~  238 (411)
                      ++.|+++||+.|+.+.+.+.++..    .+.+..++.+.+ .    .+.+..|..++|++++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~   59 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI   59 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            578999999999999999988765    355666665544 1    3555668889998754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK13189 peroxiredoxin; Provisional

Probab=96.91  E-value=0.009  Score=52.03  Aligned_cols=86  Identities=14%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             CCC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217           47 ANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE   97 (411)
Q Consensus        47 ~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~   97 (411)
                      +++ .+|+.|++.||+.|....+.+.+.++.++. ++.++.|.++.                           +..+++.
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            455 556688899999999999999999998864 45565555541                           2367888


Q ss_pred             cCCC-------cccEEEEEeC-CCCCccc----CCCCCcchhHHHHH
Q 015217           98 YGIR-------GFPTIKVFVP-GKPPVDY----QGARDVKPIAEFAL  132 (411)
Q Consensus        98 ~~i~-------~~P~~~~~~~-g~~~~~~----~g~~~~~~l~~~~~  132 (411)
                      ||+.       ..|+.++++. |......    ...++.+++.+.+.
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~  160 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVK  160 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            8875       4688888864 4331121    23344555555554

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.90  E-value=0.0035  Score=42.02  Aligned_cols=51  Identities=24%  Similarity=0.434  Sum_probs=39.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~  238 (411)
                      +++|+.++|+.|+.....+.+      ..+.+..+|.+.++.    +.+..|...+|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            578999999999999998853      237777888777644    333348899999886

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.86  E-value=0.0048  Score=43.26  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=40.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+.+||+.|++....|++      ..+.+..+|+++++.    +.+..+-..+|++++  +|+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~   60 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK   60 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            678999999999999988875      236677778876653    555667788999744  454

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.86  E-value=0.0038  Score=43.44  Aligned_cols=51  Identities=16%  Similarity=0.408  Sum_probs=37.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC----ccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF----NVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~----~v~~~P~i~~  238 (411)
                      +++|+++||++|..+...+.+.      .+.+..++.+.+....+.+    ++..+|++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            5789999999999988887762      3566667776555444433    6778999876

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.84  E-value=0.0068  Score=52.47  Aligned_cols=87  Identities=14%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217           47 ANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE   97 (411)
Q Consensus        47 ~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~   97 (411)
                      ++++ +|+.|+++||+.|....+.+.+.+..++. ++.++.+.+|.                           +.++++.
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            4554 55588999999999999999999999864 46666666652                           2356777


Q ss_pred             cCCC-------cccEEEEEeC-CCCCcc--c--CCCCCcchhHHHHHH
Q 015217           98 YGIR-------GFPTIKVFVP-GKPPVD--Y--QGARDVKPIAEFALQ  133 (411)
Q Consensus        98 ~~i~-------~~P~~~~~~~-g~~~~~--~--~g~~~~~~l~~~~~~  133 (411)
                      ||+.       ..|+.+++.. |.....  |  .-.++.+++.+.+..
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a  159 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA  159 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            8863       3688888864 433222  2  123455566655543

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.82  E-value=0.0035  Score=45.61  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCcc--ccccEEEEEcCCCCCcccccCCCCH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNV--QGFPTILVFGADKDSPIPYEGARTA  255 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~v--~~~P~i~~~~~~~~~~~~y~g~~~~  255 (411)
                      ++.|+.+||++|......+.++...+. .+.+..+|.+.+    .++.+..|-  ..+|+|++   +++    +-|  ..
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi---~g~----~ig--G~   71 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV---DEK----HVG--GC   71 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE---CCE----Eec--CH
Confidence            678999999999999999998875543 356666666542    346666663  68899865   221    223  35


Q ss_pred             HHHHHHHHHHh
Q 015217          256 GAIESFALEQL  266 (411)
Q Consensus       256 ~~i~~fi~~~~  266 (411)
                      ++|.++..++.
T Consensus        72 ~dl~~~~~~~~   82 (86)
T TIGR02183        72 TDFEQLVKENF   82 (86)
T ss_pred             HHHHHHHHhcc
Confidence            78888877654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=96.81  E-value=0.0073  Score=48.37  Aligned_cols=44  Identities=14%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      .+++++|.|| +.||+.|....+.+.++..+++. .+.+..|+.+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4678888888 78999999999999999999854 57787777654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.79  E-value=0.0058  Score=42.99  Aligned_cols=54  Identities=19%  Similarity=0.313  Sum_probs=39.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHH----HhcCCC-cccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA----QEYGIR-GFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~----~~~~i~-~~P~~~~~~~g~  113 (411)
                      ++.|+.++|++|.+....|.+.      ++.+-.+|++.+++..    +..|.. .+|++++  +|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCE
Confidence            5789999999999999888752      4667777887665433    345766 8998643  554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=96.78  E-value=0.011  Score=50.64  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.||+ .||+.|....+.+.++.+.+.. ++.++.|+++.                            ..++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            47788889995 7799999999999999998875 56777666652                            235788


Q ss_pred             hcCCC------cccEEEEEeCCC
Q 015217           97 EYGIR------GFPTIKVFVPGK  113 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~g~  113 (411)
                      .||+.      .+|+.+++++.+
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G  137 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKG  137 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCC
Confidence            88885      368888887543

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.78  E-value=0.009  Score=48.85  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      ..++++|.||+. ||+.|....+.+.++.+.+.+ .+.+..|+.+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~   74 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK   74 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            356788889975 788899999999999988876 47777776554

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.78  E-value=0.0064  Score=43.56  Aligned_cols=70  Identities=11%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH---HHhcCCCcccEEEEEeCCCCCcccCCCCCcchhH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL---AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA  128 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~---~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~  128 (411)
                      ++.|+.+||++|.+....|.+      ..+.|-.+|++++++.   .+..|...+|++++  ++...    +..+++.|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~~----~Gf~~~~l~   70 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLSW----SGFRPDMIN   70 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEEE----ecCCHHHHH
Confidence            678999999999999888854      3478888899877653   34457789999854  33222    244566666


Q ss_pred             HHHHH
Q 015217          129 EFALQ  133 (411)
Q Consensus       129 ~~~~~  133 (411)
                      +++..
T Consensus        71 ~~~~~   75 (81)
T PRK10329         71 RLHPA   75 (81)
T ss_pred             HHHHh
Confidence            55543

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=96.78  E-value=0.0058  Score=49.61  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=34.5

Q ss_pred             CeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          179 DLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       179 ~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      ++++|.|| +.||+.|....+.+.++.+.+.. .+.+..|+.+.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~   72 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS   72 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence            66677776 89999999999999999999975 47777777554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.75  E-value=0.0077  Score=52.81  Aligned_cols=81  Identities=23%  Similarity=0.368  Sum_probs=56.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD---------------------------------------  217 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~---------------------------------------  217 (411)
                      +.+..++.|..+.||+|+.+.+.+.++.+   ..+.+..+.                                       
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            34678999999999999999988776643   112222211                                       


Q ss_pred             -C----CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          218 -C----DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       218 -~----~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                       |    ..+..+++++||+++|+++ +.+|.    ...|..+.+.|.+++.+.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence             1    1134588899999999999 44433    347888899999888653

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.74  E-value=0.0042  Score=44.30  Aligned_cols=54  Identities=19%  Similarity=0.367  Sum_probs=38.8

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH----HHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL----AQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+.+||++|.+....|.+.      .+.+-.+|++.+++.    .+..|...+|++++  +|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV   58 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            4679999999999999988753      355666777766543    34457889999744  554

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=96.73  E-value=0.013  Score=50.32  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      .+++.|++.||+.|....+.+.++.+.+++ ++.++.|.++
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D   68 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD   68 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            566789999999999999999999999874 4677777665

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.64  E-value=0.0047  Score=46.19  Aligned_cols=56  Identities=18%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---h----HHHhcCCCcccEEEEEeCCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---S----LAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~----~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      -++.|..+||++|.+....|.+..      +.+..+|++.++   +    +.+..|...+|.++  .+|+.
T Consensus         9 ~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~   71 (99)
T TIGR02189         9 AVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKL   71 (99)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEE
Confidence            377899999999999998776542      444456665442   2    33334678999974  35543

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.62  E-value=0.0067  Score=43.27  Aligned_cols=54  Identities=19%  Similarity=0.347  Sum_probs=40.1

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---hhHHhhCccccccEEEE
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE---KSLMSKFNVQGFPTILV  238 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~~l~~~~~v~~~P~i~~  238 (411)
                      ...+++|+.+||++|+.....+.+.      .+.+-.++++.+   ..+.+..|...+|.+++
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i   63 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI   63 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence            4457889999999999999999742      355666776654   34555668889998865

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK15000 peroxidase; Provisional

Probab=96.60  E-value=0.016  Score=49.57  Aligned_cols=44  Identities=16%  Similarity=0.201  Sum_probs=35.4

Q ss_pred             CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          177 SKDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      ..+.++++||. .||+.|....+.|.+.+.+|.. .+.+..|+++.
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~   78 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS   78 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            35688999998 5999999999999999999975 36666666553

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.59  E-value=0.017  Score=43.88  Aligned_cols=86  Identities=17%  Similarity=0.228  Sum_probs=60.0

Q ss_pred             ceEeCChhHHHHhcCCc-c-EEE---------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEee
Q 015217          275 VTELTSQDVMEEKCGSA-A-ICF---------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALN  343 (411)
Q Consensus       275 v~~l~~~~~~~~~~~~~-~-~~~---------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~  343 (411)
                      +.++++.+.++.+.... . .++         ..+.|..+|..+|+. +.|+....   ..+...+++.   .|.+++++
T Consensus         2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd-~~F~~t~~---~~~~~~~~~~---~~~vvl~r   74 (107)
T cd03068           2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLRED-YKFHHTFD---SEIFKSLKVS---PGQLVVFQ   74 (107)
T ss_pred             ceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccC-CEEEEECh---HHHHHhcCCC---CCceEEEC
Confidence            35566666666654333 2 222         347899999999998 99988776   6788888875   67888886


Q ss_pred             cCC------CccccCCCC-CChhH-HHHHHHH
Q 015217          344 VKK------GVYTPLKSA-FELEH-IVEFVKE  367 (411)
Q Consensus       344 ~~~------~~~~~~~~~-~~~~~-i~~fi~~  367 (411)
                      |..      .+...|.+. .+.++ |.+||..
T Consensus        75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            543      333567766 67766 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK13190 putative peroxiredoxin; Provisional

Probab=96.58  E-value=0.015  Score=49.88  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=56.2

Q ss_pred             CCeE-EEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHhhC
Q 015217          178 KDLW-IVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKF  228 (411)
Q Consensus       178 ~~~~-lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~l~~~~  228 (411)
                      .+.+ ++.|+++||+.|..-.+.+.++..+|.. .+.+..|+++.                           +..+++.|
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y  106 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY  106 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence            3434 4467899999999999999998888865 35555555442                           33466667


Q ss_pred             ccc------cccEEEEEcCCCCCcccc----cCCCCHHHHHHHHHH
Q 015217          229 NVQ------GFPTILVFGADKDSPIPY----EGARTAGAIESFALE  264 (411)
Q Consensus       229 ~v~------~~P~i~~~~~~~~~~~~y----~g~~~~~~i~~fi~~  264 (411)
                      |+.      .+|+.+++..++......    .+..+.+++.+.+..
T Consensus       107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~  152 (202)
T PRK13190        107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA  152 (202)
T ss_pred             CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            763      368888886655322111    234577777766644

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.58  E-value=0.0079  Score=44.44  Aligned_cols=59  Identities=31%  Similarity=0.438  Sum_probs=44.2

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--c------------------------------cHhHHHhcC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--E------------------------------HQSLAQEYG   99 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~------------------------------~~~~~~~~~   99 (411)
                      ++.|+.+.|++|..+.+.+.++.....+++.+......  .                              +...+.++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998666666655544331  1                              124567789


Q ss_pred             CCcccEEEEEe
Q 015217          100 IRGFPTIKVFV  110 (411)
Q Consensus       100 i~~~P~~~~~~  110 (411)
                      +.++|++++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999987743

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.55  E-value=0.0092  Score=48.06  Aligned_cols=44  Identities=14%  Similarity=0.263  Sum_probs=37.1

Q ss_pred             CCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc
Q 015217          177 SKDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE  221 (411)
Q Consensus       177 ~~~~~lv~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~  221 (411)
                      ..+++++.||+.| |++|+...+.+.++.+.+. .+.+..|+.+..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~   69 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLP   69 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCH
Confidence            3568999999988 6999999999999999986 588888887653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=96.54  E-value=0.024  Score=47.86  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC-------------------------CchhHHhhCcc
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD-------------------------SEKSLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~-------------------------~~~~l~~~~~v  230 (411)
                      .+.++++|| +.||+.|....+.|.+...+|.. .+.+.-|+.+                         .+..+++.||+
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            457888888 99999999999999999999864 3545544433                         24457777887


Q ss_pred             c----cc--cEEEEEcCCCCCccccc----CCCCHHHHHHHH
Q 015217          231 Q----GF--PTILVFGADKDSPIPYE----GARTAGAIESFA  262 (411)
Q Consensus       231 ~----~~--P~i~~~~~~~~~~~~y~----g~~~~~~i~~fi  262 (411)
                      .    +.  |+.+++..++.....+.    ...+.+++.+.+
T Consensus       111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l  152 (187)
T PRK10382        111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI  152 (187)
T ss_pred             CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence            2    44  88888865553222221    124666766665

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=96.53  E-value=0.022  Score=41.86  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             ccEEEEecCCCchh-hHHHhCCCCCCCCeEEEee-cCCCccccCCCCCChhHHHHHHHHHc
Q 015217          311 HYSFVWAAAGKQPD-LENRVGVGGYGYPALVALN-VKKGVYTPLKSAFELEHIVEFVKEAG  369 (411)
Q Consensus       311 ~~~f~~i~~~~~~~-~~~~f~~~~~~~P~l~v~~-~~~~~~~~~~~~~~~~~i~~fi~~~~  369 (411)
                      ++.|+....++..+ +....++.. .-|.+++++ |++++|+.-..++|.+.+.+|+++++
T Consensus        56 p~~f~~a~ede~tdsLRDf~nL~d-~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl  115 (116)
T cd03071          56 PLLFFVAGEDDMTDSLRDYTNLPE-AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL  115 (116)
T ss_pred             ceeeeeeccchHHHHHHHhcCCCc-cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence            56666665555544 555667764 789999998 45566655557799999999999986

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.52  E-value=0.0073  Score=41.76  Aligned_cols=51  Identities=18%  Similarity=0.307  Sum_probs=37.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL----MSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l----~~~~~v~~~P~i~~  238 (411)
                      ++.|+++||++|+.....+.+..      +.+..+|...+...    .+..+...+|++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~   56 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            57899999999999999988764      56667777665543    33456677897754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.51  E-value=0.0083  Score=41.90  Aligned_cols=66  Identities=9%  Similarity=0.199  Sum_probs=45.7

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC---ccccccEEEEEcCCCCCcccccCCCCHHHHH
Q 015217          183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF---NVQGFPTILVFGADKDSPIPYEGARTAGAIE  259 (411)
Q Consensus       183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~---~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~  259 (411)
                      .+|..++|+.|+.....+.+      ..+.|..+|.+.++.....+   |...+|.+++ . +.    ..-|.++.+.|.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~-~-g~----~~~~G~~~~~~~   69 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA-D-GD----LSWSGFRPDKLK   69 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE-C-CC----cEEeccCHHHHH
Confidence            57888999999999998875      24677778887776555544   7778998766 2 21    133456666654


Q ss_pred             H
Q 015217          260 S  260 (411)
Q Consensus       260 ~  260 (411)
                      +
T Consensus        70 ~   70 (72)
T TIGR02194        70 A   70 (72)
T ss_pred             h
Confidence            4

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.50  E-value=0.0097  Score=41.54  Aligned_cols=54  Identities=15%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh---HHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS---LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+.+||+.|.+....|.+.      ++.+..+|++.+..   +.+..|...+|.+++  +|+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~   59 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCE
Confidence            6889999999999998888742      35666677765542   333458889999743  554

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.0084  Score=42.82  Aligned_cols=51  Identities=16%  Similarity=0.401  Sum_probs=37.2

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----hHHHhc-CCCcccEEEE
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEY-GIRGFPTIKV  108 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----~~~~~~-~i~~~P~~~~  108 (411)
                      ++.|..++|++|.+....|.      +..+.+..++.+.+.     +..++- |.+.+|.+++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            67899999999999988887      234566666665443     344454 7899999765

>PHA03050 glutaredoxin; Provisional

Probab=96.40  E-value=0.0065  Score=46.20  Aligned_cols=58  Identities=21%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---c----HhHHHhcCCCcccEEEEEeCCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---H----QSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---~----~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++.|..+|||+|++....|.+.....+   .+..+|+++   .    ..+.+.-|.+.+|++++  +|+.
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~   79 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTS   79 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEE
Confidence            788999999999999988877653221   344455553   2    24555568889999754  5543

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.34  E-value=0.042  Score=39.32  Aligned_cols=73  Identities=8%  Similarity=0.099  Sum_probs=52.2

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH---hhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM---SKFNVQGFPTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~---~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      .+.+|..+||++|......+.+      ..+.|-.+|.+.+++..   +..|...+|.+++   ++.    .-+.++.+.
T Consensus         2 ~v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i---~~~----~~~Gf~~~~   68 (81)
T PRK10329          2 RITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA---GDL----SWSGFRPDM   68 (81)
T ss_pred             EEEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE---CCE----EEecCCHHH
Confidence            3678999999999999988864      24778888888766533   3346678998865   221    123578888


Q ss_pred             HHHHHHHHh
Q 015217          258 IESFALEQL  266 (411)
Q Consensus       258 i~~fi~~~~  266 (411)
                      |.+.+..+.
T Consensus        69 l~~~~~~~~   77 (81)
T PRK10329         69 INRLHPAPH   77 (81)
T ss_pred             HHHHHHhhh
Confidence            888877654

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.31  E-value=0.013  Score=50.17  Aligned_cols=76  Identities=25%  Similarity=0.374  Sum_probs=50.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD---------------------------------------  217 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~---------------------------------------  217 (411)
                      +.+..++.|+.+.|++|+.+.+.+.+    ..+.+.+..+.                                       
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            35688999999999999999987765    12222222211                                       


Q ss_pred             ------CCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          218 ------CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       218 ------~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                            .+.+..+++++|+.++|+++ +.++.    ...|..+.+.|.++
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~  196 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEAL  196 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhh
Confidence                  11233588889999999997 55433    25677777777665

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=96.27  E-value=0.025  Score=50.31  Aligned_cols=82  Identities=20%  Similarity=0.329  Sum_probs=54.5

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe----------------CC----------------------
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD----------------CD----------------------  219 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~----------------~~----------------------  219 (411)
                      .+..++.|..+.|++|+++++.+..+.+.  +++.+..+-                |.                      
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            45778899999999999998887665443  222222221                00                      


Q ss_pred             ------------CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          220 ------------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       220 ------------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                                  .+..+.+++|++++|++++-..++ ......|....++|.+.+
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l  248 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIM  248 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence                        012367789999999999875433 244567887888877664

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.23  E-value=0.019  Score=42.90  Aligned_cols=77  Identities=13%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             ccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch----hHHhhCcccc-ccEEEEEc
Q 015217          167 SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK----SLMSKFNVQG-FPTILVFG  240 (411)
Q Consensus       167 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~----~l~~~~~v~~-~P~i~~~~  240 (411)
                      .+++.+++..+ +++++++=.++.|+-+......|++......+.+.++.++.-+.+    .++++|||.. -|.+++++
T Consensus         7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~   86 (105)
T PF11009_consen    7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK   86 (105)
T ss_dssp             HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE
T ss_pred             HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE
Confidence            45566655443 567777778899999999999999999988877999999876654    5788999984 59999999


Q ss_pred             CCC
Q 015217          241 ADK  243 (411)
Q Consensus       241 ~~~  243 (411)
                      +|.
T Consensus        87 ~g~   89 (105)
T PF11009_consen   87 NGK   89 (105)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            876

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.20  E-value=0.013  Score=43.84  Aligned_cols=51  Identities=20%  Similarity=0.235  Sum_probs=35.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh-------HHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS-------LMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-------l~~~~~v~~~P~i~~  238 (411)
                      ++.|..+|||+|+.....+.+..      +.|..+|.+.++.       +.+..|...+|.|++
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi   67 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV   67 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence            77899999999999999887642      4444555554432       333346778998854

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=96.19  E-value=0.032  Score=47.91  Aligned_cols=41  Identities=24%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      .+++.|+++||+.|....+.+.+++..|.. .+.+..|+++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~   69 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS   69 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            456678899999999999999999999975 36777676554

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.19  E-value=0.012  Score=41.82  Aligned_cols=51  Identities=16%  Similarity=0.414  Sum_probs=37.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhh----CccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK----FNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~----~~v~~~P~i~~  238 (411)
                      ++.|+.++|++|......+.+.      .+.+..+|.+.++...++    .|...+|++++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            3578899999999999999853      355666666666544443    46678998865

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.19  E-value=0.02  Score=40.21  Aligned_cols=51  Identities=20%  Similarity=0.386  Sum_probs=37.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh----hCccc-cccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS----KFNVQ-GFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~----~~~v~-~~P~i~~  238 (411)
                      +++|..++|++|......+.+.      .+.|..++.+.++...+    ..|.. .+|++++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            5789999999999999988762      36666777776554433    35665 7898765

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PHA03050 glutaredoxin; Provisional

Probab=96.14  E-value=0.015  Score=44.24  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=39.8

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---c----hhHHhhCccccccEEEE
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---E----KSLMSKFNVQGFPTILV  238 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---~----~~l~~~~~v~~~P~i~~  238 (411)
                      +.++++  ++.|..+|||+|+.....+.+......   .|..+|.+.   .    ..+.+.-|...+|+|++
T Consensus         9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050          9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             HhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            344443  778999999999999999887643221   344444443   2    23555567788999866

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=96.03  E-value=0.08  Score=40.92  Aligned_cols=69  Identities=17%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             hHHHH-hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE-EEEE
Q 015217          170 FDELV-LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT-ILVF  239 (411)
Q Consensus       170 ~~~~~-~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~-i~~~  239 (411)
                      ..+.+ .+.++.+++-|..+|.+.|-++-+.+.++|...++-..++.||.++-++..+.|.+.. |. +++|
T Consensus        11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~d-P~tvmFF   81 (133)
T PF02966_consen   11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYD-PCTVMFF   81 (133)
T ss_dssp             HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-S-SEEEEEE
T ss_pred             HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCC-CeEEEEE
Confidence            33443 3457799999999999999999999999999999989999999999999999999995 65 5555

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.00  E-value=0.031  Score=39.05  Aligned_cols=51  Identities=12%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~  238 (411)
                      +++|+.++|+.|+.....+.+      ..+.+..+|...++.    +.+..+-..+|.+++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            678999999999999998886      236677777776554    445556677898865

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=95.95  E-value=0.063  Score=47.71  Aligned_cols=85  Identities=11%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      .+.++++|| +.||+.|....+.|.+...+|.. .+.+..|+++.                            +..+++.
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka  177 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS  177 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence            445666666 89999999999999999999865 25555555443                            2346677


Q ss_pred             Cccc-----cccEEEEEcCCCCCcccc----cCCCCHHHHHHHH
Q 015217          228 FNVQ-----GFPTILVFGADKDSPIPY----EGARTAGAIESFA  262 (411)
Q Consensus       228 ~~v~-----~~P~i~~~~~~~~~~~~y----~g~~~~~~i~~fi  262 (411)
                      ||+.     ..|+.+++..++.....+    ....+.+++.+.+
T Consensus       178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l  221 (261)
T PTZ00137        178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLF  221 (261)
T ss_pred             cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence            7764     368888886555322222    1124556665554

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=95.88  E-value=0.032  Score=38.88  Aligned_cols=67  Identities=15%  Similarity=0.333  Sum_probs=44.1

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      .+++|..++|+.|......+.+.      .+.+..++.+.+.   .+.+..|...+|.+++   +++    +-|  ..++
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi---~g~----~ig--g~~~   66 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI---DGE----LIG--GSDD   66 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE---CCE----EEe--CHHH
Confidence            36789999999999999888752      3556666665543   2334457888998854   221    223  2567


Q ss_pred             HHHHH
Q 015217          258 IESFA  262 (411)
Q Consensus       258 i~~fi  262 (411)
                      |.+|+
T Consensus        67 l~~~l   71 (72)
T cd03029          67 LEKYF   71 (72)
T ss_pred             HHHHh
Confidence            76664

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.035  Score=39.60  Aligned_cols=51  Identities=18%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----hHHhhC-ccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKF-NVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~l~~~~-~v~~~P~i~~  238 (411)
                      ++.|..++||+|+.....+.+      ..+.|..++.+...     +..++. |...+|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            677899999999999988883      23555555544333     334444 7889998887

>PRK10638 glutaredoxin 3; Provisional

Probab=95.59  E-value=0.044  Score=39.43  Aligned_cols=54  Identities=9%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|..+||++|++....+.+.      .+.+..+|++.++    .+.+..|...+|++++  +|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~   61 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ   61 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            6788999999999999888753      3556667776554    3445567888998744  554

>PRK13189 peroxiredoxin; Provisional

Probab=95.58  E-value=0.084  Score=45.99  Aligned_cols=41  Identities=12%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      .++++|+++||+.|....+.|.+++.+|.. .+.+..|+++.
T Consensus        38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~   79 (222)
T PRK13189         38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ   79 (222)
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            455577799999999999999999999975 36666665553

>PRK13599 putative peroxiredoxin; Provisional

Probab=95.52  E-value=0.09  Score=45.52  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      .+++.|.++||+.|..-.+.|.++..+|.. .+.+.-++++.
T Consensus        31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~   72 (215)
T PRK13599         31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ   72 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            456788899999999999999999999965 36666666554

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=95.51  E-value=0.052  Score=39.92  Aligned_cols=59  Identities=34%  Similarity=0.546  Sum_probs=44.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--C------------------------------chhHHhhCc
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--S------------------------------EKSLMSKFN  229 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--~------------------------------~~~l~~~~~  229 (411)
                      +..|++..|+.|..+.+.+.++.....+++.+......  .                              +.....++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            46799999999999999999998777776666654332  1                              123566789


Q ss_pred             cccccEEEEEc
Q 015217          230 VQGFPTILVFG  240 (411)
Q Consensus       230 v~~~P~i~~~~  240 (411)
                      +.++|++++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999999843

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=95.39  E-value=0.043  Score=46.07  Aligned_cols=42  Identities=10%  Similarity=0.204  Sum_probs=35.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~  219 (411)
                      ..++++|.|+++||+.|.+ .+.+.++.++|++ .+.+..+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            3579999999999999975 8899999999986 4888888774

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=95.38  E-value=0.29  Score=41.07  Aligned_cols=82  Identities=18%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             CCcEEeCc-cchHHHHhcCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEE
Q 015217          160 NESIELNS-SNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       160 ~~v~~l~~-~~~~~~~~~~~~--~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      ..|.++++ ++|.+.+....+  ..+|..|.+.-+.|..+...+.-+|..|. .++|..+-. ++.....+|....+|++
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckiks-s~~gas~~F~~n~lP~L  215 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKS-SNTGASDRFSLNVLPTL  215 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeee-ccccchhhhcccCCceE
Confidence            35777755 778877655533  67889999999999999999999999987 588988873 34556788999999999


Q ss_pred             EEEcCCC
Q 015217          237 LVFGADK  243 (411)
Q Consensus       237 ~~~~~~~  243 (411)
                      .+|++|.
T Consensus       216 liYkgGe  222 (273)
T KOG3171|consen  216 LIYKGGE  222 (273)
T ss_pred             EEeeCCc
Confidence            9998765

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=95.37  E-value=0.083  Score=39.29  Aligned_cols=48  Identities=19%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217           58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      +||++|.+....|.+..      +.+..+|.+++++    +.+..|-..+|++++  +|+
T Consensus        25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~   76 (97)
T TIGR00365        25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGE   76 (97)
T ss_pred             CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence            89999999998887642      4566778766554    334457779999754  554

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=95.31  E-value=0.076  Score=44.42  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=24.3

Q ss_pred             EEECCCChhhhhhhHHHHHHHHHhCCCeEE
Q 015217           54 EFYAPWCGHCQALTPIWEKAATVLKGVATV   83 (411)
Q Consensus        54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~   83 (411)
                      +|+-|.|+.|-...|.|.++...+++++.+
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~   31 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF   31 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence            699999999999999999999999986544

>PRK13191 putative peroxiredoxin; Provisional

Probab=95.19  E-value=0.14  Score=44.27  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=32.3

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      .+++.|.++||+.|....+.|.+++.+|.. .+.+..++++.
T Consensus        36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds   77 (215)
T PRK13191         36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS   77 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            444577899999999999999999999965 36666666554

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.14  E-value=0.068  Score=39.13  Aligned_cols=48  Identities=23%  Similarity=0.451  Sum_probs=33.9

Q ss_pred             CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217           58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      +||++|.+....|.+..      +.+..+|++.+++    +.+..|-..+|++++  +|+
T Consensus        21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~   72 (90)
T cd03028          21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE   72 (90)
T ss_pred             CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence            79999999988887653      5666677765553    444457889999743  554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=94.94  E-value=0.14  Score=38.02  Aligned_cols=45  Identities=20%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217          188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV  238 (411)
Q Consensus       188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~  238 (411)
                      +|||+|......+.+..      +.|..+|...++.    +.+..|...+|.+++
T Consensus        25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365        25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            89999999999987743      5566677765554    334456678898875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10638 glutaredoxin 3; Provisional

Probab=94.90  E-value=0.083  Score=37.98  Aligned_cols=51  Identities=12%  Similarity=0.335  Sum_probs=37.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~  238 (411)
                      +++|..++|++|+.....+.+.      .+.+..+|++.+..    +.+..|...+|++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            6688899999999999988863      35566677765553    344456778998855

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=94.90  E-value=0.27  Score=42.54  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             cccCCCCCcEEeCccchhH--HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE
Q 015217           24 ALYGSSSPVVQLTPNNFKS--KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL   86 (411)
Q Consensus        24 ~~~~~~~~~~~l~~~~f~~--~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v   86 (411)
                      +...++..+..++++....  .....++|.++.|.+-.||+-..-...++++++.+.+...|..|
T Consensus        76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V  140 (237)
T PF00837_consen   76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV  140 (237)
T ss_pred             CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence            3456778899999877221  22467899999999999999999999999999999875445433

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=94.81  E-value=0.013  Score=51.98  Aligned_cols=128  Identities=22%  Similarity=0.351  Sum_probs=88.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-ccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      +..++-+.||++||+..+...|.+.-....+.. +....++ ....+++..+||+.+.|++.+..... ..+|.|.++..
T Consensus        75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~-~~~~~~~r~l~  152 (319)
T KOG2640|consen   75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC-PASYRGERDLA  152 (319)
T ss_pred             cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecccc-chhhcccccHH
Confidence            356899999999999999999998887777762 3333332 23557889999999999988877654 68999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 015217          126 PIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAAN  205 (411)
Q Consensus       126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~  205 (411)
                      .|++|..+.+.                        ....++.       .+...-....+|.+||++.....|...-+..
T Consensus       153 sLv~fy~~i~~------------------------~~v~ie~-------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~  201 (319)
T KOG2640|consen  153 SLVNFYTEITP------------------------MSVLIEI-------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTW  201 (319)
T ss_pred             HHHHHHHhhcc------------------------chhcccc-------cCcccceeeeEeccccCcccccCcCCCcchh
Confidence            99999876541                        1111111       1111245677888888776666665544444


Q ss_pred             Hh
Q 015217          206 NL  207 (411)
Q Consensus       206 ~~  207 (411)
                      ..
T Consensus       202 ~r  203 (319)
T KOG2640|consen  202 AR  203 (319)
T ss_pred             cc
Confidence            43

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=94.78  E-value=0.24  Score=42.38  Aligned_cols=42  Identities=7%  Similarity=0.181  Sum_probs=32.8

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 015217          178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD  219 (411)
Q Consensus       178 ~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~  219 (411)
                      .+.++|+||. .||+.|......+.+++++|.. .+.+..|+++
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d   79 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD   79 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4577788885 7899998888899999999876 4666666655

>PRK10824 glutaredoxin-4; Provisional

Probab=94.77  E-value=0.11  Score=39.89  Aligned_cols=57  Identities=18%  Similarity=0.321  Sum_probs=36.6

Q ss_pred             HhcCCCeEEEEEeC-----CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH----hhCccccccEEEE
Q 015217          174 VLKSKDLWIVEFFA-----PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM----SKFNVQGFPTILV  238 (411)
Q Consensus       174 ~~~~~~~~lv~f~~-----~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~----~~~~v~~~P~i~~  238 (411)
                      ++++++  +|.|..     ++||+|+.....+....      +.+..+|.+.+..+.    +.-|...+|.|++
T Consensus        11 ~I~~~~--Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         11 QIAENP--ILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             HHhcCC--EEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            344444  444565     59999999999988763      334445555554433    3346678998887

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=94.69  E-value=0.52  Score=39.20  Aligned_cols=104  Identities=15%  Similarity=0.282  Sum_probs=75.0

Q ss_pred             CCCCcEEeCccchHHHHhcCC-C-eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLKSK-D-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~-~-~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      .-..|..++..++.+.+.... . -++|..|...-+.|.-+...+..+|..|.. ++|+.+-.+..   ...|.-...||
T Consensus        89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPT  164 (240)
T KOG3170|consen   89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPT  164 (240)
T ss_pred             cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCe
Confidence            456799999999988875543 3 567788999999999999999999999985 78877643322   33466677899


Q ss_pred             EEEEcCCCCC-----cccccC-CCCHHHHHHHHHHH
Q 015217          236 ILVFGADKDS-----PIPYEG-ARTAGAIESFALEQ  265 (411)
Q Consensus       236 i~~~~~~~~~-----~~~y~g-~~~~~~i~~fi~~~  265 (411)
                      |++|..|.-.     +..+-| ..+.+++..++.+.
T Consensus       165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence            9999765421     222333 24677777777665

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=94.00  E-value=0.22  Score=41.33  Aligned_cols=87  Identities=17%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             CCcEEeCccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ..|..+++.+|-+.+..  ++-.|+|..|..+-+-|.-+...++.++..++. +.|+++=.+..-   .-|-=...||++
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI---pNYPe~nlPTl~  166 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI---PNYPESNLPTLL  166 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc---CCCcccCCCeEE
Confidence            45778998888877743  445789999999999999999999999999986 566666433211   112234679999


Q ss_pred             EEeCCCCCcccCC
Q 015217          108 VFVPGKPPVDYQG  120 (411)
Q Consensus       108 ~~~~g~~~~~~~g  120 (411)
                      +|..|.....+-|
T Consensus       167 VY~~G~lk~q~ig  179 (240)
T KOG3170|consen  167 VYHHGALKKQMIG  179 (240)
T ss_pred             EeecchHHhheeh
Confidence            9988865444433

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=93.90  E-value=0.18  Score=36.90  Aligned_cols=45  Identities=27%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217          188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV  238 (411)
Q Consensus       188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~  238 (411)
                      +||++|+.....+.+..      +.|..+|...+..    +.+..|-..+|.|++
T Consensus        21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi   69 (90)
T cd03028          21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV   69 (90)
T ss_pred             CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            69999999998887643      5566667665554    344456778998855

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10824 glutaredoxin-4; Provisional

Probab=93.81  E-value=0.21  Score=38.30  Aligned_cols=48  Identities=19%  Similarity=0.325  Sum_probs=31.9

Q ss_pred             CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH----HHhcCCCcccEEEEEeCCC
Q 015217           58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL----AQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~  113 (411)
                      |||++|++....|....      +.+..+|.+.++++    -+.-|-..+|.+++  +|+
T Consensus        28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~   79 (115)
T PRK10824         28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGE   79 (115)
T ss_pred             CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            69999999998887753      33444566655443    33347789999655  554

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=93.79  E-value=0.14  Score=49.15  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh---HHHh---------cCCCcccEEEE
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS---LAQE---------YGIRGFPTIKV  108 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~---~~~~---------~~i~~~P~~~~  108 (411)
                      ++.|+.+||++|.+....|.+.      +|.+..+|+++++.   +.++         .|.+.+|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            7899999999999998887763      36777788886653   2222         36788999755

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=92.98  E-value=0.43  Score=35.82  Aligned_cols=54  Identities=19%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-h----HHhhCccccccEEEE
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-S----LMSKFNVQGFPTILV  238 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-~----l~~~~~v~~~P~i~~  238 (411)
                      .+|.|..+||++|..+...|..    +.....+..+|-..+. +    +.+--|-+.+|.+++
T Consensus        15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen   15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            3677999999999998888887    4445666666654332 2    333334557898887

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=92.84  E-value=0.23  Score=41.54  Aligned_cols=36  Identities=22%  Similarity=0.517  Sum_probs=27.8

Q ss_pred             EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 015217          184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD  219 (411)
Q Consensus       184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~  219 (411)
                      +|..|.|+.|-...+.+.++...+..++.+-.+-..
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~   37 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGG   37 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEcc
Confidence            689999999999999999999999998777666443

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=0.49  Score=35.48  Aligned_cols=57  Identities=25%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-hHHHh----cCCCcccEEEEEeCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-SLAQE----YGIRGFPTIKVFVPGK  113 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-~~~~~----~~i~~~P~~~~~~~g~  113 (411)
                      -+|.|..+||+.|.++...|.+    +.-...++.+|-+.+. ++.+.    -|-+.+|.+++  +|+
T Consensus        15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk   76 (104)
T KOG1752|consen   15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK   76 (104)
T ss_pred             CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence            4567899999999997777766    4444566666666443 33333    34668999655  554

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=92.48  E-value=0.43  Score=39.02  Aligned_cols=44  Identities=30%  Similarity=0.447  Sum_probs=36.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~~  220 (411)
                      +.++.++.|++..|++|..+.+.+.++.+.+  .+++.|...+...
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~   56 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL   56 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence            3468899999999999999999999999999  7788888877643

...

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=92.48  E-value=2.3  Score=36.87  Aligned_cols=59  Identities=10%  Similarity=0.161  Sum_probs=47.4

Q ss_pred             CCCCCcEEeCccc---hHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217          157 SDSNESIELNSSN---FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV  216 (411)
Q Consensus       157 ~~~~~v~~l~~~~---~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v  216 (411)
                      ..+++++.++...   +.++ .+.+.|.++.|.+-.||+-..-...|++++++|.+.+.|..|
T Consensus        79 APns~vv~l~g~~~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V  140 (237)
T PF00837_consen   79 APNSPVVTLDGQRSCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV  140 (237)
T ss_pred             CCCCceEeeCCCcceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence            3568889998877   4443 456789999999999999999999999999999986555544

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=92.46  E-value=0.5  Score=39.68  Aligned_cols=86  Identities=14%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             CcEEeC-ccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           31 PVVQLT-PNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        31 ~~~~l~-~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .|.+++ .++|...+.+.  ....+|+.|-++-+.|..+...+.-+|..++- +.|.++-.+ +-....+|...++|++.
T Consensus       139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss-~~gas~~F~~n~lP~Ll  216 (273)
T KOG3171|consen  139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSS-NTGASDRFSLNVLPTLL  216 (273)
T ss_pred             eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeec-cccchhhhcccCCceEE
Confidence            456665 46787555333  34789999999999999999999999998864 677777655 23346788899999999


Q ss_pred             EEeCCCCCccc
Q 015217          108 VFVPGKPPVDY  118 (411)
Q Consensus       108 ~~~~g~~~~~~  118 (411)
                      +|.+|..+-+|
T Consensus       217 iYkgGeLIgNF  227 (273)
T KOG3171|consen  217 IYKGGELIGNF  227 (273)
T ss_pred             EeeCCchhHHH
Confidence            99998765444

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=92.38  E-value=0.36  Score=38.98  Aligned_cols=38  Identities=45%  Similarity=0.641  Sum_probs=30.6

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV  216 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v  216 (411)
                      .++.++.|+..+|++|+.+.+.+.++...+. ++.+...
T Consensus         5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~   42 (154)
T cd03023           5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK   42 (154)
T ss_pred             CCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence            4678999999999999999999999887764 4544443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=91.51  E-value=2.8  Score=30.86  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      +.+.++.|..+. ..|..+...++++|..- +++.+-..+...           ..|++.+..++....++|.|-..-.+
T Consensus        19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhE   85 (94)
T cd02974          19 NPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHE   85 (94)
T ss_pred             CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchh
Confidence            445566676655 88999999998888764 466664432111           46999998776444699999877788


Q ss_pred             HHHHHHH
Q 015217          258 IESFALE  264 (411)
Q Consensus       258 i~~fi~~  264 (411)
                      +..|+..
T Consensus        86 f~Slila   92 (94)
T cd02974          86 FTSLVLA   92 (94)
T ss_pred             HHHHHHH
Confidence            8888754

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.28  E-value=1.2  Score=44.64  Aligned_cols=86  Identities=19%  Similarity=0.302  Sum_probs=66.2

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhHHHhc------
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEY------   98 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~~~~~------   98 (411)
                      .+.....++++.|. .....++|+++-...+||.-|.-+..+=   .++++.++..+.-++||-++-|.+-+.|      
T Consensus        24 nPV~W~pW~~eAf~-~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~  102 (667)
T COG1331          24 NPVDWYPWGEEAFA-KAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA  102 (667)
T ss_pred             CCccccccCHHHHH-HHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence            34556678889999 7888999999999999999998877732   6788888888888899988777554444      


Q ss_pred             --CCCcccEEEEE-eCCCC
Q 015217           99 --GIRGFPTIKVF-VPGKP  114 (411)
Q Consensus        99 --~i~~~P~~~~~-~~g~~  114 (411)
                        |--|+|.-+|+ ++|++
T Consensus       103 ~tG~GGWPLtVfLTPd~kP  121 (667)
T COG1331         103 ITGQGGWPLTVFLTPDGKP  121 (667)
T ss_pred             hccCCCCceeEEECCCCce
Confidence              34589976666 45554

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=91.19  E-value=4.6  Score=35.30  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCCC------eEEEEEecccc--------------------------Hh
Q 015217           47 ANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKGV------ATVAALDANEH--------------------------QS   93 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~------i~~~~vd~~~~--------------------------~~   93 (411)
                      .++.++++|.=+.||. |=.....+.++...++.+      =.|..+|-.++                          ++
T Consensus       138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~  217 (280)
T KOG2792|consen  138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ  217 (280)
T ss_pred             ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence            5889999999999986 766666666666666531      15667776433                          26


Q ss_pred             HHHhcCCCccc-------------EEEEE--e-CCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           94 LAQEYGIRGFP-------------TIKVF--V-PGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        94 ~~~~~~i~~~P-------------~~~~~--~-~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +|++|.|..-+             ++++|  . +|+-+.-|.-..+.+++.+-+.+++.
T Consensus       218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~  276 (280)
T KOG2792|consen  218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA  276 (280)
T ss_pred             HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence            78888776444             34444  3 34433444447788888888877764

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=90.89  E-value=0.11  Score=46.18  Aligned_cols=86  Identities=21%  Similarity=0.442  Sum_probs=68.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC-CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHH
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAG  256 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~  256 (411)
                      ...+-+.||+.||+..+...+.|.-....|.. +....++- ...+++..+||+.+.|++.+....-  +..|.|..+..
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~--~~~~~~~r~l~  152 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC--PASYRGERDLA  152 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecccc--chhhcccccHH
Confidence            44778899999999999999999888877763 33333331 2345688899999999999987655  88999999999


Q ss_pred             HHHHHHHHHh
Q 015217          257 AIESFALEQL  266 (411)
Q Consensus       257 ~i~~fi~~~~  266 (411)
                      +|++|..+.+
T Consensus       153 sLv~fy~~i~  162 (319)
T KOG2640|consen  153 SLVNFYTEIT  162 (319)
T ss_pred             HHHHHHHhhc
Confidence            9999988776

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=90.56  E-value=3  Score=30.69  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVK  125 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~  125 (411)
                      ++.+.++.|.... ..|......++.++..- ++|.+...+...           ..|++.+..+|+. -++|.|-....
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh   84 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH   84 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence            4556677777766 99999988888888764 566664433221           4699999877633 58999998888


Q ss_pred             hhHHHHHH
Q 015217          126 PIAEFALQ  133 (411)
Q Consensus       126 ~l~~~~~~  133 (411)
                      ++..++..
T Consensus        85 Ef~Slila   92 (94)
T cd02974          85 EFTSLVLA   92 (94)
T ss_pred             hHHHHHHH
Confidence            88888754

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=90.56  E-value=2  Score=36.17  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKG   79 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~   79 (411)
                      .+.+|+...|+.|....+.+.++.+.+.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~   29 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYPD   29 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence            36789999999999999999999998844

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=90.52  E-value=0.51  Score=39.32  Aligned_cols=41  Identities=29%  Similarity=0.472  Sum_probs=35.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD  217 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~  217 (411)
                      ..++.++.|+...||+|+.+.+.+..+.+++.+++.+..+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence            45788999999999999999999999999987777776544

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=90.46  E-value=0.63  Score=44.67  Aligned_cols=51  Identities=12%  Similarity=0.321  Sum_probs=38.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh---HHhh---------CccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS---LMSK---------FNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~---l~~~---------~~v~~~P~i~~  238 (411)
                      ++.|..+|||+|+.....+.+.      .+.|..+|.+.++.   +.++         .|...+|+|++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999999888863      36777788776553   2222         36678899876

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=89.68  E-value=3.4  Score=35.51  Aligned_cols=71  Identities=15%  Similarity=0.115  Sum_probs=46.6

Q ss_pred             ccchhHHHhcCCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC-C---C--eEEEEEecc-ccHhHHHhcCC-CcccEEE
Q 015217           37 PNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLK-G---V--ATVAALDAN-EHQSLAQEYGI-RGFPTIK  107 (411)
Q Consensus        37 ~~~f~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-~---~--i~~~~vd~~-~~~~~~~~~~i-~~~P~~~  107 (411)
                      ++.|. ...-++++++|.|.=+.|+. |-.....+.++.+.+. +   +  +.++.+|-+ +.++..++|.. ...|.+.
T Consensus        57 G~~~~-~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~  135 (207)
T COG1999          57 GKPFT-LKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI  135 (207)
T ss_pred             CCEee-ccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence            34455 33337999999999888875 7777777777777776 2   3  455555555 34678888887 5555444


Q ss_pred             E
Q 015217          108 V  108 (411)
Q Consensus       108 ~  108 (411)
                      .
T Consensus       136 ~  136 (207)
T COG1999         136 G  136 (207)
T ss_pred             e
Confidence            3

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=89.13  E-value=1  Score=36.70  Aligned_cols=58  Identities=19%  Similarity=0.286  Sum_probs=41.5

Q ss_pred             CCCeEEEEEECCCChhhhhh-hHHHHHHHHHhCC-Ce-EEEEEeccc---cHhHHHhcCC-Cccc
Q 015217           47 ANGVVLVEFYAPWCGHCQAL-TPIWEKAATVLKG-VA-TVAALDANE---HQSLAQEYGI-RGFP  104 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~-~i-~~~~vd~~~---~~~~~~~~~i-~~~P  104 (411)
                      .+..+++.|.+.||+.|-.. .+.+.+...++.. .+ .++.|.++.   ..++++++++ ..+|
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~   93 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR   93 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence            34566666667799999998 9999998888864 34 477777663   4457778877 2444

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=88.70  E-value=2.2  Score=29.51  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHh-CCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVL-KGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      .+..|-+..-+..++....+.++-+.+ .+.+.+-.||..+++++++.++|-..|+++=
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk   61 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK   61 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence            455566666688888888888877665 4578999999999999999999999999753

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=88.10  E-value=1.9  Score=35.87  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=36.1

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCC-hhhhhhhHHHHHHHHHhCC---CeEEEEEecc
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWC-GHCQALTPIWEKAATVLKG---VATVAALDAN   89 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C-~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~   89 (411)
                      ..+-+++.+. ...-++++++|.|.-..| ..|-.....+.++.+.+..   ++.++.|.+|
T Consensus        37 L~d~~G~~~~-~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD   97 (174)
T PF02630_consen   37 LTDQDGKTVT-LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD   97 (174)
T ss_dssp             EEETTSSEEE-GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred             EEcCCCCEec-HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence            3344445555 333468999999999999 5688777778777776652   4555444444

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.87  E-value=3.6  Score=36.29  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             CeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 015217           49 GVVLVEFYAPWCGHCQALTPIWEKAATVL   77 (411)
Q Consensus        49 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~   77 (411)
                      ++.++.|....|++|++..+.+.+.....
T Consensus        85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~  113 (244)
T COG1651          85 PVTVVEFFDYTCPYCKEAFPELKKKYIDD  113 (244)
T ss_pred             CceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence            67889999999999988888777744443

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=87.76  E-value=2  Score=34.63  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             EEEEECC------CChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCC----CcccEEEEEeCCC
Q 015217           52 LVEFYAP------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGI----RGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i----~~~P~~~~~~~g~  113 (411)
                      +|.|+++      +|++|.+....|+..      .|.+-.+|.+.+++    +.+..+-    ..+|.+++  +|+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~   69 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR   69 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence            4667777      899999888877654      36677788876553    4444454    68898654  453

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=86.58  E-value=10  Score=30.03  Aligned_cols=91  Identities=9%  Similarity=0.044  Sum_probs=65.7

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccH------------------hHHHhcCCCcc
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQ------------------SLAQEYGIRGF  103 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~------------------~~~~~~~i~~~  103 (411)
                      ....|+.+|+.+++.-..+..+-...   +.+.+.++.++.+..-|.....                  ...+.++...+
T Consensus        18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f   97 (136)
T cd02990          18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL   97 (136)
T ss_pred             hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence            45688999999999876555554433   5566666777777777776542                  24556789999


Q ss_pred             cEEEEEeCCC----CCcccCCCCCcchhHHHHHHHH
Q 015217          104 PTIKVFVPGK----PPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       104 P~~~~~~~g~----~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+.+.....    .+.+..|..++++++.-+...+
T Consensus        98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v  133 (136)
T cd02990          98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM  133 (136)
T ss_pred             CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence            9988885432    2567789999999988887654

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=86.04  E-value=3.2  Score=33.70  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=41.3

Q ss_pred             cCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---ccHhHHHhcCCC
Q 015217           46 NANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDAN---EHQSLAQEYGIR  101 (411)
Q Consensus        46 ~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---~~~~~~~~~~i~  101 (411)
                      -.+++++++||.. +++-|-...-.+.....+++. +..+..|-.|   ....+++++++.
T Consensus        28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~   88 (157)
T COG1225          28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT   88 (157)
T ss_pred             hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            3577888888864 689999999999998888876 5666666655   345677777765

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=84.50  E-value=15  Score=27.52  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             EEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHH----hhCccc-ccc
Q 015217          163 IELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLM----SKFNVQ-GFP  234 (411)
Q Consensus       163 ~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~----~~~~v~-~~P  234 (411)
                      ..++.++..+..... +...++.|.....+.-.++.+.++++|+.+..  ++.|.-||-+.-+-+.    +.|+|. .-|
T Consensus         4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P   83 (120)
T cd03074           4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP   83 (120)
T ss_pred             hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence            445566666654333 46888999988888889999999999999976  5999999887766443    345654 238


Q ss_pred             EEEEEcCCCCCcccc--cCC---CCHHHHHHHHHHH
Q 015217          235 TILVFGADKDSPIPY--EGA---RTAGAIESFALEQ  265 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y--~g~---~~~~~i~~fi~~~  265 (411)
                      .|=+..-.....+-+  .+.   .+++.+.+||...
T Consensus        84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             ceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence            888875433333333  232   5788999998653

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=84.46  E-value=6.8  Score=30.76  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=49.6

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCC----cccEEEEEeCCCCCcccCCCCCcc
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR----GFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~----~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      .-++.|++|.|+=|..+...++      ...+.+-.+..++-..+-+++||.    +--|.++  +|.   -.+|....+
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~   94 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE   94 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence            4578899999999987665554      124667777777777777888875    2233333  453   346778888


Q ss_pred             hhHHHHHH
Q 015217          126 PIAEFALQ  133 (411)
Q Consensus       126 ~l~~~~~~  133 (411)
                      +|..++.+
T Consensus        95 aI~~ll~~  102 (149)
T COG3019          95 AIARLLAE  102 (149)
T ss_pred             HHHHHHhC
Confidence            88877764

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=83.97  E-value=4.3  Score=29.22  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             CeEEEEEECCCChhhhhhhHHHHHHHH-HhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217           49 GVVLVEFYAPWCGHCQALTPIWEKAAT-VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        49 ~~~~v~f~~~~C~~C~~~~~~~~~~~~-~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      .+++=.|.+..-+.+++....+.++-+ .+.|.+.+-.||..+++++++.++|-..|+++=..++ ...+.-|..+..
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~~   79 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSDR   79 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccch
Confidence            456777788888888888888888765 4456788889999999999999999999997644333 356667776543

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=83.80  E-value=4.1  Score=30.25  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHH-HhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAAT-VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~-~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      +..+++-.|.+..-+..++....+.++-+ .+.+.+.+-.||..+++++++.++|-..|+++=.-+. ...+.-|..+..
T Consensus         4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd~   82 (103)
T PRK09301          4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSDR   82 (103)
T ss_pred             CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-CcceeecccccH
Confidence            34678888888888899888888888765 4456788889999999999999999999997644333 356777777644

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.78  E-value=1.2  Score=30.62  Aligned_cols=55  Identities=18%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc--------------H--hHHHhcCCCcccEEEEEeCCCC
Q 015217           53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--------------Q--SLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~--------------~--~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++|++..|+.|..+..+++++.-.+      -.|++...              +  +-.+..|.-|+|++ +..+|+.
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~v~y------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~d~~v   75 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLNVDY------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTDDGKV   75 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcCCCc------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeCCCcE
Confidence            7899999999999888887764333      23343321              1  23566788899996 4566654

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=82.79  E-value=2  Score=37.01  Aligned_cols=40  Identities=20%  Similarity=0.509  Sum_probs=33.0

Q ss_pred             CeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeC
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDC  218 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~  218 (411)
                      ++-+|.|++-.|++|..+.+.+   ..+.+.+.+.+.+..+..
T Consensus        38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            4669999999999999999876   788888887777766543

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=82.10  E-value=7.9  Score=26.78  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=43.8

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNL-KGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~-~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      .+.+|-+...+.+......+.++-+.+ .+.+.+-.||...++.+++.++|-.+|+++=
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk   61 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK   61 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence            355666655566666666666665554 4579999999999999999999999999764

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=80.75  E-value=6  Score=31.87  Aligned_cols=51  Identities=16%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             EEEEeCC------CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCcc----ccccEEEE
Q 015217          182 IVEFFAP------WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNV----QGFPTILV  238 (411)
Q Consensus       182 lv~f~~~------~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v----~~~P~i~~  238 (411)
                      +|+|.++      +|++|+.....+...      .+.|-.+|.+.+..    +.+..+.    ..+|.|++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            5667777      899999999888754      36677788776554    4444454    56898876

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		3e-36
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		2e-19
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		7e-32
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		6e-30
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		4e-27
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		5e-24
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-11
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		3e-23
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		5e-18
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		1e-21
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		7e-12
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		2e-20
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		3e-20
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		2e-18
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		1e-19
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		6e-16
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-19
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-19
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		4e-18
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		7e-16
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		6e-18
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		3e-16
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		6e-18
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		6e-16
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		4e-17
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		8e-17
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		3e-11
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		5e-16
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		3e-10
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		8e-16
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		1e-15
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		5e-10
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		1e-15
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		4e-11
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		2e-15
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		2e-09
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		2e-15
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		2e-09
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		2e-15
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		6e-10
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		2e-15
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		4e-10
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		2e-15
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		7e-10
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		2e-15
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		1e-09
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		2e-15
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		7e-10
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		3e-15
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		9e-10
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		3e-15
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		2e-10
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		4e-15
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		1e-09
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		4e-15
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		1e-09
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		4e-15
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		7e-10
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		5e-15
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		6e-10
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		6e-15
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		1e-09
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		7e-15
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		7e-10
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		1e-14
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		6e-10
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		1e-14
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		4e-09
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		1e-14
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		9e-09
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		2e-14
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		4e-12
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		2e-14
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		9e-09
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		2e-14
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		7e-09
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		3e-14
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		9e-09
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		3e-14
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		5e-09
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-14
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		9e-14
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		5e-09
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		1e-13
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		5e-08
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		2e-13
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		1e-11
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		8e-13
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		1e-07
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		1e-12
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		4e-08
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		1e-12
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		5e-07
2o7k_A	107	S. Aureus Thioredoxin Length = 107		1e-12
2o7k_A	107	S. Aureus Thioredoxin Length = 107		1e-07
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		2e-12
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		2e-08
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		2e-12
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		6e-12
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		3e-12
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		1e-07
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-11
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-06
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-11
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		5e-11
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		2e-11
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		3e-09
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		2e-11
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		5e-11
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		4e-11
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		2e-06
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		4e-11
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		2e-06
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		5e-11
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		1e-10
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		8e-08
3tco_A	109	Crystallographic And Spectroscopic Characterization		2e-10
3tco_A	109	Crystallographic And Spectroscopic Characterization		2e-08
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		2e-10
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		3e-06
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		2e-10
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		5e-10
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		5e-10
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		6e-10
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		2e-05
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		9e-10
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		1e-07
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		9e-10
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		6e-06
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		1e-09
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		6e-06
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		2e-09
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		3e-08
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		2e-09
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		3e-08
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		2e-09
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		2e-06
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		3e-09
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		1e-06
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		6e-09
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		6e-09
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		1e-06
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		1e-08
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		1e-06
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		2e-08
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		1e-07
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		4e-08
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		1e-05
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		4e-08
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		1e-05
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		4e-08
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		5e-08
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		6e-08
1thx_A	115	Thioredoxin-2 Length = 115		7e-08
1thx_A	115	Thioredoxin-2 Length = 115		2e-06
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		1e-07
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		5e-06
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		1e-07
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		1e-05
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		1e-07
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		3e-06
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		2e-07
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		1e-04
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		2e-07
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-07
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		2e-07
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		3e-07
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		2e-06
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		3e-07
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		3e-06
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		3e-07
3hz4_A	140	Crystal Structure Of Thioredoxin From Methanosarcin		5e-07
3hz4_A	140	Crystal Structure Of Thioredoxin From Methanosarcin		6e-04
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		1e-06
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		1e-04
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		1e-06
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		1e-06
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-06
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-06
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		3e-06
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		2e-04
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		5e-06
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		2e-04
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		8e-06
3gnj_A	111	The Crystal Structure Of A Thioredoxin-Related Prot		8e-06
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		9e-06
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		1e-05
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		9e-05
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		1e-05
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		2e-05
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		1e-05
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		2e-05
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		1e-05
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		2e-05
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		7e-05
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		2e-05
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		2e-05
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-05
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		7e-05
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		4e-05
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		9e-05
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		4e-05
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		9e-05
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		4e-05
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		4e-05
3ul3_B	128	Structural Insights Into Thioredoxin-2: A Component		5e-05
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		7e-05
3qcp_A	470	Qsox From Trypanosoma Brucei Length = 470		7e-05
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		7e-05
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-04
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		1e-04
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		1e-04
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-04
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		1e-04
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		2e-04
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		3e-04
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		2e-04
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		3e-04
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		2e-04
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		3e-04
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		5e-04
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		6e-04
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		8e-04

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 124/240 (51%), Gaps = 27/240 (11%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDA 88
           V+ L   NF + V + +  VL+EFYAPWCGHC+   P +EK A +LK       VA +DA
Sbjct: 17  VLVLNDANFDNFVADKD-TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKAT 148
                LA  + + G+PTIK+   G+  VDY+G+R                 +E +  K  
Sbjct: 76  TSASVLASRFDVSGYPTIKILKKGQA-VDYEGSR----------------TQEEIVAKVR 118
Query: 149 XXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK 208
                        ++ L   NFDE+V    D+ +VEF+APWCGHCKKLAPE++KAA  L 
Sbjct: 119 EVSQPDWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELS 177
Query: 209 GK---VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
            +   + L  VD  +E  L  +F+V G+PT+ +F   K  P  Y G R    I  + +EQ
Sbjct: 178 KRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFR--KGRPYDYNGPREKYGIVDYMIEQ 235

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHV 216
           N  + LN +NFD  V   KD  ++EF+APWCGHCK+ APE++K AN LK K   + +  +
Sbjct: 15  NGVLVLNDANFDNFVA-DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 217 DCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN-VAPPEV 275
           D  S   L S+F+V G+PTI +    K   + YEG+RT   I +   E  + +   PPEV
Sbjct: 74  DATSASVLASRFDVSGYPTIKILK--KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEV 131
Query: 276 TELTSQDVMEEKCGSAAICF 295
           T + +++  +E    A I  
Sbjct: 132 TLVLTKENFDEVVNDADIIL 151

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score =  134 bits (338), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 25  LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
           LY SS  V++LTP+NF  +V+ ++G+ LVEFYAPWCGHCQ LTP W+KAAT LK V  V 
Sbjct: 12  LYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG 71
Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDVKPIAEFALQQIKA 137
           A++A++HQSL  +YG++GFPTIK+F   K  P DYQG R  + I + AL  +++
Sbjct: 72  AVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ IEL  SNF+  V++S  LW+VEF+APWCGHC++L PEWKKAA  LK  VK+G V+ D
Sbjct: 17  DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD 76
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLET 268
             +SL  ++ VQGFPTI +FGA+K+ P  Y+G RT  AI   AL  L +
Sbjct: 77  KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL----KGKVKLGHVDC 218
           IEL   +FD+ VL S+D+W+VEF+APWCGHCK L PEW  AA+ +    KGKVKL  VD 
Sbjct: 10  IELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA 69
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTE 277
              + L S++ ++GFPTI +F    +SP+ Y+G RT   I S AL+    N  PPE+ E
Sbjct: 70  TVNQVLASRYGIRGFPTIKIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLE 127

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 114/260 (43%), Gaps = 30/260 (11%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           +S V  L P NF +   +     LV+F+APW    +AL P   KA+T+L G   V  LD 
Sbjct: 439 NSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDC 495
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKAT 148
             H+ L   Y I+ +PT  VF       +Y+G    + I EF          E L   + 
Sbjct: 496 TIHEGLCNMYNIQAYPTTVVFNQSSIH-EYEGHHSAEQILEFI---------EDLRNPSV 545
Query: 149 XXXXXXXXXXXNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANN 206
                         + L  S F+ELV + K  ++W+V+F++PW    + L PEWK+ A  
Sbjct: 546 --------------VSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMART 591
Query: 207 LKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
           L G + +G VDC    S  ++ NVQ +P I  +         Y  +      ++++L   
Sbjct: 592 LTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYH-SYNGWNRDAYSLRSW 650
Query: 267 ETNVAPPEVTELTSQDVMEE 286
                P    +LT Q   E+
Sbjct: 651 GLGFLPQASIDLTPQTFNEK 670

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E I L    FD  V  S +LW V F++P   H   LAP W++ A  + G +++G V+C  
Sbjct: 117 EIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGD 175
Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTS 280
           ++ L     V  +P++ +F +   + + Y G R+  ++ +FA++ + +      VTEL++
Sbjct: 176 DRMLCRMKGVNSYPSLFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRST-----VTELST 229

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 19/136 (13%)
Query: 25  LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
            Y S   + +LTP +F   + N N   LVEFYAPWCGHC+ L+  + KAA  L GV  VA
Sbjct: 12  FYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVA 71
Query: 85  AL--DANEHQSLAQEYGIRGFPTIKVFVPGK----PPVD-------------YQGARDVK 125
           A+  D N++++L  +Y + GFPT+ VF P K     P+D             Y GAR + 
Sbjct: 72  AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131
Query: 126 PIAEFALQQIKALLKE 141
           PI +F+L +I++ +K+
Sbjct: 132 PIVDFSLSRIRSYVKK 147

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--SE 221
           EL   +FD+ +  +    +VEF+APWCGHCKKL+  ++KAA  L G V++  V+CD    
Sbjct: 21  ELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80
Query: 222 KSLMSKFNVQGFPTILVF---GADKDSPIP-------------YEGARTAGAIESFALEQ 265
           K+L +K++V GFPT++VF     D   PI              Y GART   I  F+L +
Sbjct: 81  KALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140
Query: 266 LETNV 270
           + + V
Sbjct: 141 IRSYV 145

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 52/313 (16%)
Query: 30  SPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           S V++LT +NF+S++ +    G++LVEF+APWCGH + L P +E AAT LKG+  +A +D
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
              + +   +YG+ G+PT+K+F  G+    Y G R    I     +Q         +G A
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ---------AGPA 111
Query: 148 TXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL 207
                         S+ L +    +  +  KD  IV FF            E+ KAA+NL
Sbjct: 112 --------------SVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS---EFLKAASNL 154
Query: 208 KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-----KDSPIPY-EGARTAGAIESF 261
           +   +  H + +   SL+++++  G   IL   +      +D  + Y E   T+G I+ F
Sbjct: 155 RDNYRFAHTNVE---SLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKF 211
Query: 262 ALEQLETNVAPPEVTE------------LTSQDVMEEKCGSAAICFYLEMLLSVAEKFKR 309
             E +      P +TE            +   DV  EK    +  ++   ++ VA+KF  
Sbjct: 212 IQENIFGIC--PHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGS-NYWRNRVMMVAKKFLD 268
Query: 310 GHYSFVWAAAGKQ 322
             +   +A A ++
Sbjct: 269 AGHKLNFAVASRK 281

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSL 224
           + NFDE+V       ++EF+APWCGHCK L P++K+    L     + +  +D  +   +
Sbjct: 359 AENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDV 417
Query: 225 MSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAIESFALEQLETNVAPPEVTE 277
            S + V+GFPTI    A+K  +P  YEG R      S+ L++  TN  PP + E
Sbjct: 418 PSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY-LQREATN--PPVIQE 468

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSE 221
           ++L + +F+E + +S DL + EFFAPWCGHCK +APE+ KAA  L  K + L  +DC   
Sbjct: 17  VKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN 75
Query: 222 KSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQLETNVA 271
           + L  + N+ GFP++ +F  +D ++ I YEG RTA AI  F ++Q +  VA
Sbjct: 76  QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVA 126

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA---TV 83
           GSS   + LT +NF   V NA+ ++LVEFYAPWCGHC+ L P +EKAA  L   +    +
Sbjct: 4   GSSGVTLSLTKDNFDDVVNNAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 62
Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
           A +DA E   LA+ + + G+PT+K+F  G+ P DY G R+   I ++ ++Q
Sbjct: 63  AKVDATEQTDLAKRFDVSGYPTLKIFRKGR-PFDYNGPREKYGIVDYMIEQ 112

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDC 218
           ++ L   NFD++V  + D+ +VEF+APWCGHCKKLAPE++KAA  L  +   + L  VD 
Sbjct: 9   TLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 67
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
             +  L  +F+V G+PT+ +F   K  P  Y G R    I  + +EQ
Sbjct: 68  TEQTDLAKRFDVSGYPTLKIF--RKGRPFDYNGPREKYGIVDYMIEQ 112

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV----LKGVAT 82
           GSS  V+ LT NNF   +  A G+  ++FYAPWCGHC+ L P WE+ +      L GV  
Sbjct: 4   GSSGTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK- 60
Query: 83  VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
           +A +D    +++  +Y +RG+PT+ +F  GK   ++ G RD+  +  F L Q K
Sbjct: 61  IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAK 114

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKAANNLKGKVKLGHVDC 218
           + L  +NFD+ +  ++ +  ++F+APWCGHCK LAP W    KK    L G VK+  VDC
Sbjct: 10  LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 66
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
            +E+++ SK++V+G+PT+L+F   K     + G R   ++  F L Q
Sbjct: 67  TAERNICSKYSVRGYPTLLLFRGGKKVS-EHSGGRDLDSLHRFVLSQ 112

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 30  SPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           S V++LT +NF+S++ +    G++LVEF+APWCGHC+ L P +E AAT LKG+  +A +D
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
              + +   +YG+ G+PT+K+F  G+    Y G R    I     +Q
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ 107

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 160 NESIELNSSNFDELV--LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217
           ++ +EL   NF+  +    S  L +VEFFAPWCGHCK+LAPE++ AA  LKG V L  VD
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 218 CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
           C +  +  +K+ V G+PT+ +F  D +    Y+G RTA  I S   +Q
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKKQ 107

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV----LKGVATVAALD 87
           V+ LT NNF   +  A G+  ++FYAPWCGHC+ L P WE+ +      L GV  +A +D
Sbjct: 2   VLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK-IAEVD 58
Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
               +++  +Y +RG+PT+ +F  GK   ++ G RD+  +  F L Q K
Sbjct: 59  CTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAK 107

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKAANNLKGKVKLGHVDC 218
           + L  +NFD+ +  ++ +  ++F+APWCGHCK LAP W    KK    L G VK+  VDC
Sbjct: 3   LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 59
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
            +E+++ SK++V+G+PT+L+F   K     + G R   ++  F L Q
Sbjct: 60  TAERNICSKYSVRGYPTLLLFRGGKKVS-EHSGGRDLDSLHRFVLSQ 105

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 6/101 (5%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDA 88
           V+ L  +NF ++ L A+  +LVEFYAPWCGHC+AL P + KAA  LK   +   +A +DA
Sbjct: 9   VLVLRKSNF-AEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGK--PPVDYQGARDVKPI 127
            E   LAQ+YG+RG+PTIK F  G    P +Y   R+   I
Sbjct: 68  TEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDI 108

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE 221
           L  SNF E +   K L +VEF+APWCGHCK LAPE+ KAA  LK    +++L  VD   E
Sbjct: 12  LRKSNFAEALAAHKYL-LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 222 KSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAI 258
             L  ++ V+G+PTI  F   D  SP  Y   R A  I
Sbjct: 71  SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDI 108

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV----LKGVATVAA 85
           S V+ LT NNF   +  A G+  ++FYAPWCGHC+ L P WE+ +      L GV  +A 
Sbjct: 5   STVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK-IAE 61
Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
           +D    +++  +Y +RG+PT+ +F  GK   ++ G RD+  +  F L Q
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ 110

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKAANNLKGKVKLGHVDC 218
           + L  +NFD+ +  ++ +  ++F+APWCGHCK LAP W    KK    L G VK+  VDC
Sbjct: 8   LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 64
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
            +E+++ SK++V+G+PT+L+F   K     + G R   ++  F L Q
Sbjct: 65  TAERNICSKYSVRGYPTLLLFRGGKKVS-EHSGGRDLDSLHRFVLSQ 110

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSE 221
           LN  NFD  V   KD  ++EF+APWCGHCK+ APE++K A+ LK     + +  +D  S 
Sbjct: 22  LNDGNFDNFVA-DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN-VAPPEVT 276
             L SKF+V G+PTI +    K   + Y+G+RT   I +   E  + +   PPEVT
Sbjct: 81  SMLASKFDVSGYPTIKILK--KGQAVDYDGSRTQEEIVAKVREVSQPDWTPPPEVT 134

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 62/102 (60%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCGHC+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCGHCK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 11  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
           +++   A +YGIRG PT+ +F  G+      GA         +  Q+K  L   L+G A
Sbjct: 71  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA--------LSKGQLKEFLDANLAGSA 121

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D   
Sbjct: 15  IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 74
Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF--------ALEQ----LETNV 270
               K+ ++G PT+L+F  + +      GA + G ++ F        A+E     L   V
Sbjct: 75  GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLAGSAMESTVMVLRNMV 133
Query: 271 APPEVTELTSQDVMEEKCG 289
            P ++ +    +V EE CG
Sbjct: 134 DPKDIDDDLEGEVTEE-CG 151

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           SI+L    F+E VL+ K  W+V+F+APWCG C+  APE++  A  +KGKV+ G VDC + 
Sbjct: 5   SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY 64
Query: 222 KSLMSKFNVQGFPTILVFGADK------DSPIPYEGARTAGAIESFALEQLETNV 270
                K  ++ +P++ ++  ++      +  I    A+T  A+    LE L++ V
Sbjct: 65  PQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQV 119

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI E+ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP  ++ A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA--TVA 84
           GSS PV  +    F + V++    VL+EFYAPWCGHC+ L PI+       KG     +A
Sbjct: 4   GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63
Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPG---KPPVDYQGA-RDVKPIAEFALQQI--KAL 138
            +DA  +     +Y + GFPTI  F P    K P+ ++G  RD++ +++F  +    ++ 
Sbjct: 64  KMDATANDITNDQYKVEGFPTI-YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSR 122
Query: 139 LKERLSGKAT 148
            KE LSG ++
Sbjct: 123 TKEELSGPSS 132

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL--GHVDCDSEKSLMS 226
            FD +V+  K   ++EF+APWCGHCK+L P +       KG+  L    +D  +      
Sbjct: 16  TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 227 KFNVQGFPTI-LVFGADKDSPIPYEGA 252
           ++ V+GFPTI      DK +PI +EG 
Sbjct: 76  QYKVEGFPTIYFAPSGDKKNPIKFEGG 102

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 62/102 (60%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F++ VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +F+  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG C+ +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A++ +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A   +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D   
Sbjct: 5   IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
               K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 65  GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI +  A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP     A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G       GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEF 102

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + D      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGDVAATKVGALSKGQLKEF----LDANLA 108

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 61
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 62  DQNPGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEF 103

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 3   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 62
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 63  QNPGTAPKYGIRGTPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 109

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEF 102

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVF 239
                  K+ ++G PT+L+F
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF 81

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT  +F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
              A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 64  PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 61/102 (59%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ +T ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I +   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           +++   A +YGIRG PT+ +F  G+      GA
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKCF----LDANLA 108

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           +++   A +YGIRG PT+ +F  G+      GA
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D   
Sbjct: 5   IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
               K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 65  GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKCF----LDCNLA 108

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIR  PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++  PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRSIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ +  I ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG CK +A    + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK-----AATVLKGVA 81
           GS  PV  +   N+   VL+    VL+EFYAPWCGHC+AL P +E+     A +  K   
Sbjct: 4   GSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRV 63
Query: 82  TVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIK 136
            +A +DA  +    +   I+GFPTIK++  G    PV Y G+R V+ + +F  +  K
Sbjct: 64  VIAKVDATANDVPDE---IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKK-----AANNLKGKVKLGHVDCDSE 221
           + N++E+VL      ++EF+APWCGHCK LAP++++     A +  K +V +  VD  + 
Sbjct: 14  AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN 73
Query: 222 KSLMSKFNVQGFPTILVFGAD-KDSPIPYEGARTAGAIESFALEQ 265
                   +QGFPTI ++ A  K  P+ Y G+RT   +  F  E 
Sbjct: 74  D---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WC  C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WC  CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKGVATVAALD 87
           S  ++ LT ++F + VL A+G +LV+F+A WCG  C+ + PI ++ A   +G  TVA L+
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLN 60
Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
            +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 103

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKGKVKLGHVDC 218
           ++ I L   +FD  VLK+    +V+F+A WCG  CK +AP   + A+  +GK+ +  ++ 
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNI 61
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
           D       K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  DQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 109

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG  + + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG  K +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG  + + PI ++ A   +G  TVA L+ 
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 81  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 122

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WCG  K +AP   + A+  +GK+ +  ++ D
Sbjct: 22  DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNID 81
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 82  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 128

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E I L    FD  V  S +LW V F++P C HC  LAP W++ A  + G +++G V+C  
Sbjct: 98  EIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD 156
Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTS 280
           ++ L     V  +P++ +F +   + + Y G R+  ++ +FA++ + +      VTEL++
Sbjct: 157 DRMLCRMKGVNSYPSLFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRST-----VTELST 210

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATV 83
           S +  L   N   ++LN   V LV FYA WC   Q L PI+E+A+ V+K           
Sbjct: 5   SEITSLDTENI-DEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPG-KPPVDYQGARDVKPIAEFALQQIKALLKE 141
           A +D ++H  +AQ Y I  +PT+K+F  G     +Y+G R VK +A++  QQ    ++E
Sbjct: 64  ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQE 122

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK------GKVKL 213
           +E   L++ N DE +L + D+ +V F+A WC   + L P +++A++ +K       +V  
Sbjct: 5   SEITSLDTENIDE-ILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 214 GHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
             VDCD    +  ++ +  +PT+ +F         Y G R+  A+  +  +Q
Sbjct: 64  ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WC   + + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  VLK+    +V+F+A WC   K +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           GSS PV  L   NF+    +    V VEFYAPWCGHC+ L PIW+K     K    +   
Sbjct: 4   GSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 63
Query: 87  DANEHQSLAQEYGIRGFPTIKVF--VPGKPPVDYQGARDVKPIAEF 130
             +   +  +   +  FPT+K F     +  +DY G R +    +F
Sbjct: 64  KMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 109

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           L   NF+++    K    VEF+APWCGHCK+LAP W K     K    +     DS  + 
Sbjct: 12  LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 225 MSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAIESF 261
           +    V  FPT+  F A  D + I Y G RT    + F
Sbjct: 72  VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 109

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           GS   +V++T  +F SKV   +GV LV+F+A WCG C+ + P+ E+ A   +G A +  L
Sbjct: 1   GSHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKL 58
Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKP 114
           D +E+ S A +Y +   PT+ VF  G+P
Sbjct: 59  DVDENPSTAAKYEVMSIPTLIVFKDGQP 86

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++  ++FD  V     + +V+F+A WCG CK +AP  ++ A + +GK  +  +D D   
Sbjct: 7   VKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 223 SLMSKFNVQGFPTILVF 239
           S  +K+ V   PT++VF
Sbjct: 65  STAAKYEVMSIPTLIVF 81

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 59/102 (57%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + ++ A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +++   A +Y  RG PT+ +F  G+      GA     + EF
Sbjct: 61  DQNPGTAPKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEF 102

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
           ++ I L   +FD  ++K+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ D
Sbjct: 2   DKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
                  K+  +G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 62  QNPGTAPKYIERGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH--------------CQALTPIWEKAA 74
           S  ++ LT ++F + VL A+G +LV+F+A WCG               C+ + PI ++ A
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 75  TVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
              +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 62  DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 117

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGH--------------CKKLAPEWKKAAN 205
           ++ I L   +FD  VLK+    +V+F+A WCG               CK +AP   + A+
Sbjct: 3   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
             +GK+ +  ++ D       K+ ++G PT+L+F
Sbjct: 63  EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 96

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           GS   +V++T  +F SKV   +GV LV+F+A WCG C+ + P+ E+ A   +G A +  L
Sbjct: 1   GSHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKL 58
Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKP 114
           D +E+ S A +Y +   PT+ VF  G+P
Sbjct: 59  DVDENPSTAAKYEVMSIPTLIVFKDGQP 86

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++  ++FD  V     + +V+F+A WCG CK +AP  ++ A + +GK  +  +D D   
Sbjct: 7   VKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 223 SLMSKFNVQGFPTILVF 239
           S  +K+ V   PT++VF
Sbjct: 65  STAAKYEVMSIPTLIVF 81

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V+++T  NF+ +VL ++  VLV+F+APWCG C+ + PI E+ A   +G   V  ++ +E+
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62
Query: 92  QSLAQEYGIRGFPTIKVFVPGK 113
            + A +YGIR  PT+ +F  G+
Sbjct: 63  PNTAAQYGIRSIPTLLLFKNGQ 84

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           IE+   NF++ VLKS    +V+F+APWCG C+ +AP  ++ A   +GKVK+  V+ D   
Sbjct: 4   IEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
           +  +++ ++  PT+L+F
Sbjct: 64  NTAAQYGIRSIPTLLLF 80

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
           PV  L   NF+    +    V VEFYAPWCGHC+ L PIW+K     K    +     + 
Sbjct: 250 PVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS 309
Query: 91  HQSLAQEYGIRGFPTIKVF--VPGKPPVDYQGARDVKPIAEF 130
             +  +   +  FPT+K F     +  +DY G R +    +F
Sbjct: 310 TANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 351

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           L   NF+++    K    VEF+APWCGHCK+LAP W K     K    +     DS  + 
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 225 MSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAIESF 261
           +    V  FPT+  F A  D + I Y G RT    + F
Sbjct: 314 VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 351

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  +V++T  +F SKV   +GV LV+F+A WCG C+ + P+ E+ A   +G A +  LD 
Sbjct: 2   SHAIVKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDV 59
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           +E+ S A +Y +   PT+ VF  G+P
Sbjct: 60  DENPSTAAKYEVMSIPTLIVFKDGQP 85

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++  ++FD  V     + +V+F+A WCG CK +AP  ++ A + +GK  +  +D D   
Sbjct: 6   VKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
           S  +K+ V   PT++VF
Sbjct: 64  STAAKYEVMSIPTLIVF 80

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           GS   +V++T  +F SKV   +GV LV+F+A WCG  + + P+ E+ A   +G A +  L
Sbjct: 1   GSHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKL 58
Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKP 114
           D +E+ S A +Y +   PT+ VF  G+P
Sbjct: 59  DVDENPSTAAKYEVMSIPTLIVFKDGQP 86

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++  ++FD  V     + +V+F+A WCG  K +AP  ++ A + +GK  +  +D D   
Sbjct: 7   VKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 223 SLMSKFNVQGFPTILVF 239
           S  +K+ V   PT++VF
Sbjct: 65  STAAKYEVMSIPTLIVF 81

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT--VAA 85
           +  PV  +   NF   V N N  VL+EFYAPWCGHC+ L P +++    L       +A 
Sbjct: 25  NDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAK 84
Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKP---PVDYQGARDVKPIAEFALQQIKALLKER 142
           +DA  +  +   Y +RGFPTI  F P      P  Y+G R+   +++F    I  L +E 
Sbjct: 85  MDATAND-VPSPYEVRGFPTI-YFSPANKKLNPKKYEGGRE---LSDF----ISYLQREA 135
Query: 143 LSGKAT 148
            SG ++
Sbjct: 136 TSGPSS 141

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLM 225
           + NFDE+V       ++EF+APWCGHCK L P++K+    L     +     D +   + 
Sbjct: 34  AENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP 93
Query: 226 SKFNVQGFPTILVFGADKD-SPIPYEGAR 253
           S + V+GFPTI    A+K  +P  YEG R
Sbjct: 94  SPYEVRGFPTIYFSPANKKLNPKKYEGGR 122

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 38  NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE 97
           + FK+ VL ++  VLV+F+APWCG C+ + P+ ++ A   K       L+ +E  ++A E
Sbjct: 9   DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 98  YGIRGFPTIKVFVPGK 113
           YGIR  PTI VF  GK
Sbjct: 69  YGIRSIPTIMVFKGGK 84

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E+  +N   F  +VL+S    +V+F+APWCG C+ +AP   + A   K K+K   ++ D 
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
Query: 221 EKSLMSKFNVQGFPTILVFGADK 243
             ++ S++ ++  PTI+VF   K
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGK 84

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---V 80
           ALY  S P+  L  +  +  VL +     VEF+A WCGHC A  P W   A  +K     
Sbjct: 6   ALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPA 65
Query: 81  ATVAALDANE--HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
             +AALD  E  + ++ +++ I GFPT++ F          G+  V P+A   +Q ++  
Sbjct: 66  LYLAALDCAEETNSAVCRDFNIPGFPTVRFFX----AFTXNGSGAVFPVAGADVQTLRER 121
Query: 139 LKERL 143
           L + L
Sbjct: 122 LIDAL 126

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDC--DSEKSLMSKF 228
           VL S+  W VEFFA WCGHC   AP W   A ++K     + L  +DC  ++  ++   F
Sbjct: 26  VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 229 NVQGFPTILVFGA 241
           N+ GFPT+  F A
Sbjct: 86  NIPGFPTVRFFXA 98

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           S  +++T  +F + VL++N  VLV+F+A WCG C+ + P+ E+ AT      TVA LD +
Sbjct: 12  SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 71
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
            +   A+ + +   PT+ +F  G+P     GA+
Sbjct: 72  TNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 104

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           +I++  ++F   VL S    +V+F+A WCG CK +AP  ++ A      + +  +D D+ 
Sbjct: 14  TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 73
Query: 222 KSLMSKFNVQGFPTILVF 239
                 F V   PT+++F
Sbjct: 74  PETARNFQVVSIPTLILF 91

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           S  +++T  +F + VL++N  VLV+F+A WCG C+ + P+ E+ AT      TVA LD +
Sbjct: 7   SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 66
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
            +   A+ + +   PT+ +F  G+P     GA+
Sbjct: 67  TNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           +I++  ++F   VL S    +V+F+A WCG CK +AP  ++ A      + +  +D D+ 
Sbjct: 9   TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 68
Query: 222 KSLMSKFNVQGFPTILVF 239
                 F V   PT+++F
Sbjct: 69  PETARNFQVVSIPTLILF 86

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDC--D 219
           L++ +    VL S   W VEFFA WCGH    AP WK+ AN++K     + L  +DC  +
Sbjct: 17  LDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEE 76
Query: 220 SEKSLMSKFNVQGFPTILVFGA 241
           +  ++  +FN+ GFPT+  F A
Sbjct: 77  TNSAVCREFNIAGFPTVRFFQA 98

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           VV+     F  +V  A  + LV+F+APWCG C+ ++PI E+ A    G   V  ++ +EH
Sbjct: 35  VVEADEKGFAQEVAGAP-LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEH 93
Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
             LA  YG+R  PT+ +F  G P   + GA
Sbjct: 94  PGLAARYGVRSVPTLVLFRRGAPVATWVGA 123

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +E +   F + V     L +V+FFAPWCG C+ ++P  ++ A +  G++K+  V+ D   
Sbjct: 36  VEADEKGFAQEV-AGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP 94
Query: 223 SLMSKFNVQGFPTILVF 239
            L +++ V+  PT+++F
Sbjct: 95  GLAARYGVRSVPTLVLF 111

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           LT  NF  +V+  N +VLV+ +A WC  C    PI++K A   KG A    L+ +E+Q +
Sbjct: 9   LTEENF-DEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI 67
Query: 95  AQEYGIRGFPTIKVFVPGKPPVDYQGARD 123
           A +Y +   PT  +FV G+      GA D
Sbjct: 68  ADKYSVLNIPTTLIFVNGQLVDSLVGAVD 96

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           ++ L   NFDE V+++  L +V+ +A WC  C    P +KK A   KGK   G ++ D  
Sbjct: 6   TLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN 64
Query: 222 KSLMSKFNVQGFPTILVF 239
           + +  K++V   PT L+F
Sbjct: 65  QKIADKYSVLNIPTTLIF 82

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           S   +V++T  +F SKV   +GV LV+F+A  CG C+ + P+ E+ A   +G A +  LD
Sbjct: 1   SHMAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLD 58
Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKP 114
            +E+ S A +Y +   PT+ VF  G+P
Sbjct: 59  VDENPSTAAKYEVMSIPTLIVFKDGQP 85

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++  ++FD  V     + +V+F+A  CG CK +AP  ++ A + +GK  +  +D D   
Sbjct: 6   VKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
           S  +K+ V   PT++VF
Sbjct: 64  STAAKYEVMSIPTLIVF 80

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           L  +  D+L L      +V+F+APWCG C+++AP+++ AA  L G+V+L  +D  +  ++
Sbjct: 57  LARAERDDLPL------LVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAV 110
Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
             +  +QG P  ++F   +      E AR AGA
Sbjct: 111 AGRHRIQGIPAFILFHKGR------ELARAAGA 137

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
           ++N S++ E VL+S+   +V+F+APWCG CK +AP   + A    GK+ +  ++ D    
Sbjct: 4   DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 224 LMSKFNVQGFPTILVF--GADKDSPI 247
           + +++N++  PT+L F  G  K+S I
Sbjct: 64  IATQYNIRSIPTVLFFKNGERKESII 89

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
           ++N S++ E VL+S+   +V+F+APWCG CK +AP   + A    GK+ +  ++ D    
Sbjct: 3   DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 224 LMSKFNVQGFPTILVF--GADKDSPI 247
           + +++N++  PT+L F  G  K+S I
Sbjct: 63  IATQYNIRSIPTVLFFKNGERKESII 88

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           S  +++T  +F + VL++N  VLV+F+A WCG  + + P+ E+ AT      TVA LD +
Sbjct: 9   SATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVD 68
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
            +   A+ + +   PT+ +F  G+P     GA+
Sbjct: 69  TNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 101

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           +I++  ++F   VL S    +V+F+A WCG  K +AP  ++ A      + +  +D D+ 
Sbjct: 11  TIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTN 70
Query: 222 KSLMSKFNVQGFPTILVF 239
                 F V   PT+++F
Sbjct: 71  PETARNFQVVSIPTLILF 88

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           GS++  +Q  P+ F+ +V+N+   V+V+F+A WCG C+ L P  EK      G   +A +
Sbjct: 11  GSTTFNIQDGPD-FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKV 69
Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           D ++H  LA EY +   PT+     G     + G +D   +  F
Sbjct: 70  DIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAF 113

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           +  +F + V+ S+   +V+F A WCG CK L P  +K      GKV +  VD D    L 
Sbjct: 19  DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLA 78
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
            ++ V   PT+L    + D    + G +    +E+F
Sbjct: 79  IEYEVSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAF 113

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           LT  NF+ + +  +G VLV+F+A WCG C+ + P+ E+ A       TVA L+ +E+   
Sbjct: 5   LTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95  AQEYGIRGFPTIKVFVPGKP 114
             ++GI   PT+ +F  G+P
Sbjct: 64  TSQFGIMSIPTLILFKGGRP 83

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           ++ L  +NF + +     + +V+F+A WCG C+ +AP  ++ A     KV +  ++ D  
Sbjct: 2   TMTLTDANFQQAIQGDGPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
               S+F +   PT+++F
Sbjct: 61  PETTSQFGIMSIPTLILF 78

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           LT  NF+ + +  +G VLV+F+A WCG C+ + P+ E+ A       TVA L+ +E+   
Sbjct: 5   LTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95  AQEYGIRGFPTIKVFVPGKP 114
             ++GI   PT+ +F  G+P
Sbjct: 64  TSQFGIMSIPTLILFKGGEP 83

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           ++ L  +NF + +     + +V+F+A WCG C+ +AP  ++ A     KV +  ++ D  
Sbjct: 2   TMTLTDANFQQAIQGDGPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
               S+F +   PT+++F
Sbjct: 61  PETTSQFGIMSIPTLILF 78

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           +++T  NF  + L  + +VLV+F+A WC  C+ + PI E+ A   +G   VA LD +E+ 
Sbjct: 5   IEVTDQNF-DETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
Query: 93  SLAQEYGIRGFPTIKVFVPGKP 114
             A  Y +   PT+ +F  G+P
Sbjct: 64  KTAXRYRVXSIPTVILFKDGQP 85

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           IE+   NFDE  L    L +V+F+A WC  C+ +AP  ++ A   +GK+ +  +D D   
Sbjct: 5   IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
               ++ V   PT+++F
Sbjct: 64  KTAXRYRVXSIPTVILF 80

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           +++T  NF  + L  + +VLV+F+A WC  C+ + PI E+ A   +G   VA LD +E+ 
Sbjct: 4   IEVTDQNF-DETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 93  SLAQEYGIRGFPTIKVFVPGKP 114
             A  Y +   PT+ +F  G+P
Sbjct: 63  KTAXRYRVXSIPTVILFKDGQP 84

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           IE+   NFDE  L    L +V+F+A WC  C+ +AP  ++ A   +GK+ +  +D D   
Sbjct: 4   IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 223 SLMSKFNVQGFPTILVF 239
               ++ V   PT+++F
Sbjct: 63  KTAXRYRVXSIPTVILF 79

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 32  VVQLTPNNFKSKVLN-----------ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV 80
           V+ LT   F +KV N            +   +V+FYA WCG C+ + PI ++ A    G 
Sbjct: 11  VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ 70
Query: 81  ATVAALDANEHQSLAQEYGIRGFPTIKVFVP--GKPPVDYQGARD----VKPIAEFALQQ 134
             +  +D  + Q LA  +GIR  P+I +F+P  GKP +  QGA       K I EF L++
Sbjct: 71  IVIYKVDTEKEQELAGAFGIRSIPSI-LFIPMEGKPEM-AQGAMPKASFKKAIDEFLLKK 128

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           IV+F+A WCG CK +AP   + A    G++ +  VD + E+ L   F ++  P+IL    
Sbjct: 42  IVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF--- 98
Query: 242 DKDSPIPYEG 251
                IP EG
Sbjct: 99  -----IPMEG 103

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           +V+ T  +F ++   + GVVL +F+APWCG C+ + P+ E+    +     +  +D +E+
Sbjct: 3   IVKATDQSFSAE--TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 92  QSLAQEYGIRGFPTIKVFVPGK 113
           Q  A +YG+   PT+ V   G+
Sbjct: 61  QETAGKYGVMSIPTLLVLKDGE 82

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           S+ + + +F+APWCG CK +AP  ++    +  K+K+  +D D  +    K+ V   PT+
Sbjct: 16  SEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 237 LVF 239
           LV 
Sbjct: 76  LVL 78

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
           ++N S++ E VL+S+   +V+F+APWCG  K +AP   + A    GK+ +  ++ D    
Sbjct: 4   DVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 224 LMSKFNVQGFPTILVF--GADKDSPI 247
           + +++N++  PT+L F  G  K+S I
Sbjct: 64  IATQYNIRSIPTVLFFKNGERKESII 89

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           LT  NF+ + +  +  VLV+F+A WCG C+ + P+ E+ A       TVA L+ +E+   
Sbjct: 5   LTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95  AQEYGIRGFPTIKVFVPGKP 114
             ++GI   PT+ +F  G+P
Sbjct: 64  TSQFGIMSIPTLILFKGGRP 83

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           ++ L  +NF + +   K + +V+F+A WCG C+ +AP  ++ A     KV +  ++ D  
Sbjct: 2   TMTLTDANFQQAIQGDKPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
               S+F +   PT+++F
Sbjct: 61  PETTSQFGIMSIPTLILF 78

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           LT  NF+ + +  +  VLV+F+A WCG C+ + P+ E+ A       TVA L+ +E+   
Sbjct: 5   LTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95  AQEYGIRGFPTIKVFVPGKP 114
             ++GI   PT+ +F  G+P
Sbjct: 64  TSQFGIMSIPTLILFKGGEP 83

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           ++ L  +NF + +   K + +V+F+A WCG C+ +AP  ++ A     KV +  ++ D  
Sbjct: 2   TMTLTDANFQQAIQGDKPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
               S+F +   PT+++F
Sbjct: 61  PETTSQFGIMSIPTLILF 78

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
           PV  L   NF  + +  N +V+V+F+A WC  C  L P+ E+ A     VA    L+  E
Sbjct: 7   PVKHLNSKNF-DEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVA-FGKLNTEE 64
Query: 91  HQSLAQEYGIRGFPTIKVFVPGK 113
            Q +A  YGI   PTI  F  G+
Sbjct: 65  SQDIAMRYGIMSLPTIMFFKNGE 87

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           LNS NFDE + K+K + +V+F+A WC  C  LAP  ++ AN+   +V  G ++ +  + +
Sbjct: 11  LNSKNFDEFITKNK-IVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEESQDI 68
Query: 225 MSKFNVQGFPTILVF 239
             ++ +   PTI+ F
Sbjct: 69  AMRYGIMSLPTIMFF 83

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           +V+ T  +F ++   + GVVL +F+APWCG  + + P+ E+    +     +  +D +E+
Sbjct: 3   IVKATDQSFSAE--TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 92  QSLAQEYGIRGFPTIKVFVPGK 113
           Q  A +YG+   PT+ V   G+
Sbjct: 61  QETAGKYGVMSIPTLLVLKDGE 82

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           S+ + + +F+APWCG  K +AP  ++    +  K+K+  +D D  +    K+ V   PT+
Sbjct: 16  SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 237 LVF 239
           LV 
Sbjct: 76  LVL 78

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           +V+ T  +F ++   + GVVL +F+APWCG  + + P+ E+    +     +  +D +E+
Sbjct: 3   IVKATDQSFSAE--TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 92  QSLAQEYGIRGFPTIKVFVPGK 113
           Q  A +YG+   PT+ V   G+
Sbjct: 61  QETAGKYGVMSIPTLLVLKDGE 82

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           S+ + + +F+APWCG  K +AP  ++    +  K+K+  +D D  +    K+ V   PT+
Sbjct: 16  SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 237 LVF 239
           LV 
Sbjct: 76  LVL 78

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S   + ++ ++F   VL A+G+VLV+F+A WCG C+ + P   +      G  TVA ++ 
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGK 113
           +++      Y +R  PT+ +   GK
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDGK 85

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
            ++ ++ S+FD+ VLK+  L +V+F+A WCG CK + P   +      GKV +  V+ D 
Sbjct: 3   HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD 62
Query: 221 EKSLMSKFNVQGFPTILV 238
                + + V+  PT+++
Sbjct: 63  NPETPNAYQVRSIPTLML 80

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E I   +   D+L L+     +++F+APWCG C+  AP + + A    GKV+   V+ ++
Sbjct: 39  EVINATAETLDKL-LQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 221 EKSLMSKFNVQGFPTILVF 239
           E +L ++F ++  PTI ++
Sbjct: 98  EPALSTRFRIRSIPTIXLY 116

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  V+ +T   F+S+VL A   VLV F+A WCG CQ ++P+   AA        V  L+ 
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65
Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVD 117
           + + +  ++Y + G P ++  V G+  +D
Sbjct: 66  DPNPTTVKKYKVEGVPALR-LVKGEQILD 93

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I +  + F+  VLK++   +V F+A WCG C+ ++P    AAN    ++K+  ++ D   
Sbjct: 10  ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
Query: 223 SLMSKFNVQGFPTILVFGADK--DSPIPYEGARTAGAIESFALEQLETN 269
           + + K+ V+G P + +   ++  DS    EG  +   + SF    L  N
Sbjct: 70  TTVKKYKVEGVPALRLVKGEQILDST---EGVISKDKLLSFLDTHLNNN 115

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110
           VL  F++    HC  LTPI E  A    G   +A LD +  Q +A ++G+R  PT+ +F 
Sbjct: 29  VLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQ 88
Query: 111 PGKPPVDYQG 120
            G+P   +QG
Sbjct: 89  NGQPVDGFQG 98

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           + +N SN  +++ +S    ++ +F +    HC +L P  +  A    G+  L  +DCD+E
Sbjct: 10  VNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAE 69
Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIP-YEGARTAGAIESFALEQLETNVAPPEVTELTS 280
           + + ++F ++  PT+ +F      P+  ++G +   AI +        +   P   EL +
Sbjct: 70  QMIAAQFGLRAIPTVYLF--QNGQPVDGFQGPQPEEAIRAL------LDXVLPREEELXA 121
Query: 281 QDVME 285
           Q  M+
Sbjct: 122 QQAMQ 126

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 28  SSSPVVQLTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           S   +V +  +N +  +  +    VL  F++    HC  LTP+ E  A    G   +A L
Sbjct: 5   SVQNIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKL 64
Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG 120
           D +  Q +A ++G+R  PT+ +F  G+P   +QG
Sbjct: 65  DCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQG 98

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           + +N SN  + + +S    ++ +F +    HC +L P  +  A    G+  L  +DCD+E
Sbjct: 10  VNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAE 69
Query: 222 KSLMSKFNVQGFPTILVFGADK-----DSPIPYEGAR 253
           + + ++F ++  PT+ +F   +       P P E  R
Sbjct: 70  QXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIR 106

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 34  QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS 93
            +T ++F+  VL  +  VLV+F+A WCG C+ + P  E  A        +  L+ +E+  
Sbjct: 9   HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG 68
Query: 94  LAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
            A +YG+   PT+ V+  G+      GA+
Sbjct: 69  TAAKYGVMSIPTLNVYQGGEVAKTIVGAK 97

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
            +   +F++ VLK+    +V+F+A WCG C+++AP  +  A     K+++  ++ D    
Sbjct: 9   HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG 68
Query: 224 LMSKFNVQGFPTILVF 239
             +K+ V   PT+ V+
Sbjct: 69  TAAKYGVMSIPTLNVY 84

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 38  NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT-VAALDANEHQSLAQ 96
           + FK +V   + VV+++F+A WCG C+ + P++EK +    G       +D +E   +AQ
Sbjct: 24  DQFK-QVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQ 82
Query: 97  EYGIRGFPTIKVFVPGK 113
           E GIR  PT   F  G+
Sbjct: 83  EVGIRAMPTFVFFKNGQ 99

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 168 SNFDEL--VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSL 224
           S++D+   V     + +++F+A WCG CK + P ++K ++   G KV    VD D +  +
Sbjct: 21  SSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQI 80
Query: 225 MSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAI 258
             +  ++  PT + F  G   D+ +  + ++   AI
Sbjct: 81  AQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAI 116

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 52  LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111
           +V+FYA WCG C+ + PI E+ +    G   +  ++ ++   LA+++GI+G PTI  FVP
Sbjct: 55  IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI-WFVP 113
Query: 112 --GKPPVD 117
             G+P V+
Sbjct: 114 MKGEPQVN 121

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           IV+F+A WCG CK +AP  ++ +    GK+ +  V+ D E  L   F +QG PTI
Sbjct: 55  IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 44/75 (58%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           L+ S+F   V +  D  I+ F   WC  CKK+ P +++ A+ ++G ++  ++D +  +  
Sbjct: 4   LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 225 MSKFNVQGFPTILVF 239
           M++ N++  P++ +F
Sbjct: 64  MAELNIRTLPSLALF 78

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V+ L   NF S  L ++ + +V+F+A WC  C  L PI E+ A     V     L+++E+
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVG-FGKLNSDEN 58
Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
             +A  YG+   PT+  F  G+P  +  GA    P  E  + +IK LL E
Sbjct: 59  PDIAARYGVMSLPTVIFFKDGEPVDEIIGA---VPREEIEI-RIKNLLGE 104

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I L+S NFD   L S ++ +V+F+A WC  C  LAP  ++ A +   +V  G ++ D   
Sbjct: 2   IHLDSKNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENP 59
Query: 223 SLMSKFNVQGFPTILVF 239
            + +++ V   PT++ F
Sbjct: 60  DIAARYGVMSLPTVIFF 76

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAA 85
           GSS  V  +T  N++  +    G  ++EFYAPWC  CQ L P WE  A   + +   +A 
Sbjct: 4   GSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAK 60
Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +D  E   L+  + I   PTI     G+    YQG R  K    F
Sbjct: 61  VDVTEQPGLSGRFIINALPTIYHCKDGE-FRRYQGPRTKKDFINF 104

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKS 223
           +   N+ EL+   +  W++EF+APWC  C+ L PEW+  A   +  +V +  VD   +  
Sbjct: 12  ITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG 68
Query: 224 LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAP 272
           L  +F +   PTI  +         Y+G RT     +F  ++   ++ P
Sbjct: 69  LSGRFIINALPTI--YHCKDGEFRRYQGPRTKKDFINFISDKEWKSIEP 115

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 166 NSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           N   FD  + K+K+   + I++F A WCG C+ +AP + + A    G V L  VD D  K
Sbjct: 21  NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELK 79
Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGAR 253
            +  K+NV+  PT L    GA+ D  +   GAR
Sbjct: 80  EVAEKYNVEAMPTFLFIKDGAEADKVV---GAR 109

>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei Length = 140

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           +L GSS  +++     +  +V ++   V+V FY+P C +C+A  P +E+ A      A  
Sbjct: 2   SLNGSS--IIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVF 59
Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
             ++   +   A++YG++G PT K F  G+P
Sbjct: 60  GRINIATNPWTAEKYGVQGTPTFKFFCHGRP 90

>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei Length = 140

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           IE     + + V  SK   +V F++P C +CK   P +++ A         G ++  +  
Sbjct: 9   IEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNP 68
Query: 223 SLMSKFNVQGFPTILVF 239
               K+ VQG PT   F
Sbjct: 69  WTAEKYGVQGTPTFKFF 85

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLE-VDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           + Q +A +YGIRG PT+ +F  G+      GA     + EF
Sbjct: 61  DAQDVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 101

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
           L +V+F A WCG CK + P +   +      + L  VD D  + +  K+ ++G PT+L+F
Sbjct: 22  LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVAPKYGIRGIPTLLLF 80

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 52  LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111
           +V+FYA WCG C+ + PI E+ +    G   +  ++ ++   LA+++GI+  PTI  FVP
Sbjct: 55  IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI-WFVP 113
Query: 112 --GKPPVD 117
             G+P V+
Sbjct: 114 MKGEPQVN 121

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           IV+F+A WCG CK +AP  ++ +    GK+ +  V+ D E  L   F +Q  PTI
Sbjct: 55  IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 44  VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF 103
           +++ N +V+V+F+A WCG C+ + P +E+ +     +  +  +D +E   + ++  I   
Sbjct: 22  IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFI-KVDVDEVSEVTEKENITSM 80
Query: 104 PTIKVFVPGKPPVDYQGARD 123
           PT KV+  G       GA D
Sbjct: 81  PTFKVYKNGSSVDTLLGAND 100

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I  + + FD ++ ++ +L IV+FFA WCG CK++AP +++ +     K+    VD D   
Sbjct: 12  IVTSQAEFDSIISQN-ELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVS 69
Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFA 262
            +  K N+   PT  V+  G+  D+ +    +     IE +A
Sbjct: 70  EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV-------LKGVAT 82
           S VV+LT   F S V++    V V +Y PW  H  A   +W+  +         L  VA 
Sbjct: 15  SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVA- 73
Query: 83  VAALDANEHQSLAQEYGIRGFPTIKVF--VPGKPPVDYQGARDVKPIAEFALQ 133
            A +D  ++  + +   + GFPT++ +  +  + P +Y G R +  +  F  Q
Sbjct: 74  -ARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVK-----LGHVD 217
           +EL    FD +V+  +    V ++ PW  H       W   + +   K          +D
Sbjct: 18  VELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARID 77
Query: 218 CDSEKSLMSKFNVQGFPTILVFG-ADKDSPIPYEGARTAGAIESFALE 264
            +    ++ +  V GFPT+  +   DK  P  Y G R    ++SF  +
Sbjct: 78  GEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 27  GSSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
           GS S +++L  +     +L  + N +V+V+F+A WCG C+ + P++++ +   K  A   
Sbjct: 1   GSMSKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFV 58
Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
            +D ++ +  A++Y I   PT      G+   D  GA
Sbjct: 59  KVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGA 95

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237
           L +V+FFA WCG CK +AP +K+ +   K       VD D  +    K+N+   PT +
Sbjct: 26  LVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPTFI 81

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 29  SSPVVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           S P+V    T     +++  A G+VLV+F+A WCG CQ L  I    A   K V T   +
Sbjct: 2   SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDV-TFIKV 60
Query: 87  DANEHQSLAQEYGIRGFPTI 106
           D +++ + A  YG+   P +
Sbjct: 61  DVDKNGNAADAYGVSSIPAL 80

>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein From Desulfitobacterium Hafniense Dcb Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           L+++ F++L+       +V F    C  C+K+ P  ++   N +      +VD + EK+L
Sbjct: 9   LDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTL 68
Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
             +F+++G P IL F   KD    Y+G + AG +E   +EQ   +V
Sbjct: 69  FQRFSLKGVPQILYF---KDG--EYKG-KXAGDVEDDEVEQXIADV 108

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 167 SSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           +++ ++L+ ++K  L +V+FFA WCG C+ +AP+ +  A  +  +V+   VD D  +   
Sbjct: 7   AADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQNEEAA 65
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGA 252
           +K++V   PT  VF  D      + GA
Sbjct: 66  AKYSVTAMPT-FVFIKDGKEVDRFSGA 91

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
           +V+++F+A WCG C+ ++P   + +T       V  +D +E + +A EY I   PT    
Sbjct: 22  LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL 81
Query: 110 VPGKPPVDYQGAR 122
             G    ++ GA 
Sbjct: 82  KNGVKVEEFAGAN 94

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231
           +L   S  L +++FFA WCG CK ++P+  + +      V +  VD D  + +  ++N+ 
Sbjct: 14  QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 232 GFPTIL 237
             PT +
Sbjct: 74  SMPTFV 79

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 32  VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
           V QL + + + S + + + +V+V+F+A WCG C+ + P+ EK A      A    LD +E
Sbjct: 9   VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSD-AAFYKLDVDE 67
Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
              +AQ+  +   PT+  +  GK      GA 
Sbjct: 68  VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 99

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           ++S +D  +     L +V+FFA WCG CK +AP  +K A           +D D    + 
Sbjct: 14  SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 72
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
            K  V   PT++ +   K      E  R  GA  +   + + +NV
Sbjct: 73  QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 111

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 32  VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
           V QL + + + S + + + +V+V+F+A WCG C+ + P+ EK A      A    LD +E
Sbjct: 2   VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSD-AAFYKLDVDE 60
Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
              +AQ+  +   PT+  +  GK      GA 
Sbjct: 61  VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 92

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           ++S +D  +     L +V+FFA WCG CK +AP  +K A           +D D    + 
Sbjct: 7   SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 65
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
            K  V   PT++ +   K      E  R  GA  +   + + +NV
Sbjct: 66  QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 104

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 170 FDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS 226
           FD  +   KD   L I++F A WCG C+ +AP + + A    G + L  VD D  K +  
Sbjct: 17  FDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVDELKDVAE 75
Query: 227 KFNVQGFPTIL 237
            +NV+  PT L
Sbjct: 76  AYNVEAMPTFL 86

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
           +V+++F+A WCG C+ ++P   + +T       V  +D +E + +A EY I   PT    
Sbjct: 27  LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL 86
Query: 110 VPGKPPVDYQGAR 122
             G    ++ GA 
Sbjct: 87  KNGVKVEEFAGAN 99

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231
           +L   S  L +++FFA WCG CK ++P+  + +      V +  VD D  + +  ++N+ 
Sbjct: 19  QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 78
Query: 232 GFPTIL 237
             PT +
Sbjct: 79  SMPTFV 84

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVF 109
           V+++ +  WCG C+A+ P +EK A     V  +  LD N E+++LA+E GIR  PT K+ 
Sbjct: 28  VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAKELGIRVVPTFKIL 86

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVF 109
           V+++ +  WCG C+A+ P +EK A     V  +  LD N E+++LA+E GIR  PT K+ 
Sbjct: 40  VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAKELGIRVVPTFKIL 98

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 46  NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105
           + N +V+V+F+A WCG C+ + P++++ +   K  A    +D ++ +  A++Y I   PT
Sbjct: 31  HKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPT 88
Query: 106 IKVFVPGKPPVDYQGA 121
                 G+   D  GA
Sbjct: 89  FIAIKNGEKVGDVVGA 104

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 160 NESIELNSS-NFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217
           +E IEL    + + L+ + K+ L +V+FFA WCG CK +AP +K+ +   K       VD
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVD 70
Query: 218 CDSEKSLMSKFNVQGFPTIL 237
            D  +    K+N+   PT +
Sbjct: 71  VDKLEETARKYNISAMPTFI 90

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 36  TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
           T + F S +   + +V+V+FYA WCG C+ + P+ EK +      A    LD +E   +A
Sbjct: 7   TASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVA 64
Query: 96  QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           Q+  +   PT+ +F  GK      GA 
Sbjct: 65  QKNEVSAMPTLLLFKNGKEVAKVVGAN 91

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
            +S FD  + + K L +V+F+A WCG CK +AP  +K +     +     +D D    + 
Sbjct: 7   TASEFDSAIAQDK-LVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 64
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
            K  V   PT+L+F   K      E A+  GA
Sbjct: 65  QKNEVSAMPTLLLFKNGK------EVAKVVGA 90

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 36  TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
           T + F S +   + +V+V+FYA WCG C+ + P+ EK +      A    LD +E   +A
Sbjct: 13  TASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVA 70
Query: 96  QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           Q+  +   PT+ +F  GK      GA 
Sbjct: 71  QKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
            +S FD  + + K L +V+F+A WCG CK +AP  +K +     +     +D D    + 
Sbjct: 13  TASEFDSAIAQDK-LVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 70
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
            K  V   PT+L+F   K      E A+  GA
Sbjct: 71  QKNEVSAMPTLLLFKNGK------EVAKVVGA 96

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D N
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVN 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 42  SKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG 99
           +K LN   N +V+++FYA WCG C+ + P  E+ +  +  V  +  +D +E + +AQ+  
Sbjct: 12  TKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL-KVDVDECEDIAQDNQ 70
Query: 100 IRGFPTIKVFVPGKPPVDYQGAR 122
           I   PT      G+      GA 
Sbjct: 71  IACMPTFLFMKNGQKLDSLSGAN 93

>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of Malaria Parasite Protein Secretion Machinery Length = 128

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           ++ N SN    V     + ++ FFA WC  C   + E  K       ++ L  VD D  +
Sbjct: 27  LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE 86
Query: 223 SLMSKFNVQGFPTILVF 239
           SL  KF+V+  PTI++ 
Sbjct: 87  SLARKFSVKSLPTIILL 103

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEK 96

>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei Length = 470

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 181 WIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKL-----GHVDCDSEKSLMSKFNVQG 232
           WIV F+   CG C++ A  + K A  LK   GK  L       V+C SE  L  K+++  
Sbjct: 45  WIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINF 104
Query: 233 FPTILVFGADKDSPIPYEGARTAGAIESFALE--QLETNVAPPEVTELTSQ-----DVME 285
            P +  F   +DS    E   T+ ++E  A E   LE +    EV  L ++     D ++
Sbjct: 105 VPRLFFFYP-RDSCRSNEECGTS-SLEHVAFENSHLEVDELESEVRRLVNKHMVVDDSLK 162
Query: 286 EKCGSAAICFYLEMLLSVAEKFKR 309
           E+C    I  + ++  S  E  KR
Sbjct: 163 ERC----IDMHFKLYTSKEELVKR 182

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEK 96

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DCQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEK 96

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           +K L +++F A WCG C+ +AP +   A      V L  VD D  K +  +F+V+  PT 
Sbjct: 33  AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL-KVDVDELKPIAEQFSVEAMPTF 91
Query: 237 LVF--GADKDSPIPYEGARTAGAIE 259
           L    G  KD        R  GAI+
Sbjct: 92  LFMKEGDVKD--------RVVGAIK 108

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEK 96

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235
           +SK L +V+F A WCG C+ +AP +   A  L   + L  VD D  KS+ S + +Q  PT
Sbjct: 36  ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFL-KVDTDELKSVASDWAIQAMPT 94
Query: 236 IL----------VFGADKD 244
            +          V GA KD
Sbjct: 95  FMFLKEGKILDKVVGAKKD 113

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 32  VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
           V QL + + + S + + + +V+V+F+A WCG  + + P+ EK A      A    LD +E
Sbjct: 10  VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD-AAFYKLDVDE 68
Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
              +AQ+  +   PT+  +  GK      GA 
Sbjct: 69  VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 100

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           ++S +D  +     L +V+FFA WCG  K +AP  +K A           +D D    + 
Sbjct: 15  SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 73
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
            K  V   PT++ +   K      E  R  GA  +   + + +NV
Sbjct: 74  QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 112

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 32  VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
           V QL + + + S + + + +V+V+F+A WCG  + + P+ EK A      A    LD +E
Sbjct: 2   VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD-AAFYKLDVDE 60
Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
              +AQ+  +   PT+  +  GK      GA 
Sbjct: 61  VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 92

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           ++S +D  +     L +V+FFA WCG  K +AP  +K A           +D D    + 
Sbjct: 7   SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 65
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
            K  V   PT++ +   K      E  R  GA  +   + + +NV
Sbjct: 66  QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 104

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DCQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEK 96

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVF 109
           V+++ +  WCG  +A+ P +EK A     V  +  LD N E+++LA+E GIR  PT K+ 
Sbjct: 27  VVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAKELGIRVVPTFKIL 85

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG  + + P +   +     V  +  +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
           + Q +A E  ++  PT + F  G+   ++ GA   K
Sbjct: 61  DSQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEK 96

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 36  TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
           T + F S +   + +V+V+FYA WCG  + + P+ EK +      A    LD +E   +A
Sbjct: 13  TASEFDSAIAQ-DKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVA 70
Query: 96  QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           Q+  +   PT+ +F  GK      GA 
Sbjct: 71  QKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           S+ L +V+F A WC  CK +AP + + A      V    VD D  K++  ++NV+  PT 
Sbjct: 25  SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPTF 83
Query: 237 LVF----------GADKDSPIPYEGARTAGA 257
           +            GADKD  +P   A+ A A
Sbjct: 84  IFLKDGKLVDKTVGADKDG-LPTLVAKHATA 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-84
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-70
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-64
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-54
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-32
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-83
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-47
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-71
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	4e-70
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	3e-46
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-63
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	6e-44
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	4e-12
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	7e-60
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	8e-60
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-38
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-11
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-58
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-31
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	4e-25
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-13
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	5e-57
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	4e-55
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	2e-54
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	1e-53
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	2e-51
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	7e-53
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-41
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-52
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-52
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-39
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	6e-35
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	5e-14
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	8e-51
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	8e-44
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-48
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-47
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-47
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-41
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	1e-47
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-44
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-46
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-44
1mek_A	120	Protein disulfide isomerase; electron transport, r	3e-46
1mek_A	120	Protein disulfide isomerase; electron transport, r	3e-46
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	9e-44
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	1e-43
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	9e-40
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	2e-37
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	3e-39
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-19
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	6e-16
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	4e-34
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	2e-32
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	2e-33
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	5e-33
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	3e-24
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	6e-20
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	3e-24
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	1e-20
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	5e-24
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	7e-20
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	5e-20
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-23
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	1e-20
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-23
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-22
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	4e-23
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	1e-20
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	5e-23
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	4e-19
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	7e-23
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	3e-19
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	8e-23
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	3e-18
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	1e-22
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	2e-18
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-22
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	6e-19
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-22
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	1e-20
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-22
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-18
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-22
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	4e-17
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	3e-22
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	6e-18
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	3e-22
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	1e-18
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	3e-22
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-18
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	3e-22
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-18
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	3e-22
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	4e-18
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	3e-21
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	4e-19
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	3e-21
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	1e-17
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	1e-20
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-17
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	2e-20
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	5e-16
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	2e-20
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	1e-16
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-20
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-16
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	4e-20
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	1e-16
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-20
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	3e-15
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	6e-20
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	1e-16
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	7e-06
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-19
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-15
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	1e-19
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	7e-16
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-19
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-15
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	1e-19
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	2e-15
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	2e-19
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	5e-16
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-19
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	7e-15
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	1e-18
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-14
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-18
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	4e-14
2l57_A	126	Uncharacterized protein; structural genomics, unkn	2e-18
2l57_A	126	Uncharacterized protein; structural genomics, unkn	7e-18
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-18
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-16
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	6e-18
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	5e-16
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	6e-18
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	1e-16
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	7e-18
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	4e-16
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	1e-17
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	4e-14
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	3e-17
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-15
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	6e-17
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	2e-15
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-16
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	9e-14
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	3e-16
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-13
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	4e-16
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	2e-11
2kuc_A	130	Putative disulphide-isomerase; structural genomics	6e-16
2kuc_A	130	Putative disulphide-isomerase; structural genomics	1e-15
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	6e-16
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	8e-14
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	8e-16
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	2e-13
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	8e-16
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	1e-14
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	1e-15
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-11
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-15
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-13
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	3e-15
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-13
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	3e-15
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	3e-13
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	3e-15
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	7e-14
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-15
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	5e-13
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	2e-14
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	2e-14
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	2e-12
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	3e-14
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-12
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	3e-14
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	4e-11
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	3e-14
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	6e-11
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-14
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	1e-12
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	6e-14
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	9e-13
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	4e-13
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	1e-10
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	9e-13
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	2e-10
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-12
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	8e-11
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	3e-12
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	4e-11
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	8e-10
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	8e-11
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	1e-07
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	3e-09
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	6e-09
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	7e-09
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	2e-07
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	2e-08
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	1e-05
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	5e-08
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	2e-07
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	6e-08
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	1e-07
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	8e-07
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	2e-06
2qsi_A	137	Putative hydrogenase expression/formation protein;	2e-06
2qsi_A	137	Putative hydrogenase expression/formation protein;	5e-06
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	3e-06
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	3e-06
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	1e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	7e-06
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-04
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	1e-05
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-05
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	3e-05
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	7e-05
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	1e-04
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	4e-04
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	2e-04
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	5e-04
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	2e-04
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	3e-04
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	3e-04
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	3e-04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	4e-04
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	4e-04
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	5e-04
2lrt_A	152	Uncharacterized protein; structural genomics, thio	6e-04

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  272 bits (695), Expect = 4e-84
 Identities = 86/366 (23%), Positives = 137/366 (37%), Gaps = 57/366 (15%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           A    +S V  L P NF +   +     LV+F+APW    +AL P   KA+T+L G   V
Sbjct: 434 AKESVNSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKV 490

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
             LD   H+ L   Y I+ +PT  VF       +Y+G    + I EF        +    
Sbjct: 491 GTLDCTIHEGLCNMYNIQAYPTTVVFNQSS-IHEYEGHHSAEQILEFIEDLRNPSV---- 545

Query: 144 SGKATGGSSDKSKSDSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWK 201
                              + L  S F+ELV   K  ++W+V+F++PW    + L PEWK
Sbjct: 546 -------------------VSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWK 586

Query: 202 KAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYE----GARTAGA 257
           + A  L G + +G VDC    S  ++ NVQ +P I  +         Y       R A +
Sbjct: 587 RMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYS 646

Query: 258 IESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-------------YLEMLLSVA 304
           + S+ L  L     P    +LT Q   E+                      +      +A
Sbjct: 647 LRSWGLGFL-----PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLA 701

Query: 305 EKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLK---SAFELEHI 361
              K G            P    + G+    YP++     ++   +  +   ++ + + I
Sbjct: 702 RMIK-GKVRAGKVDCQAYPQTCQKAGIK--AYPSVKLYQYERAKKSIWEEQINSRDAKTI 758

Query: 362 VEFVKE 367
              +  
Sbjct: 759 AALIYG 764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  234 bits (598), Expect = 4e-70
 Identities = 64/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 28  SSSPVVQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAA 85
            +  VV LTP+ F   V     + V +V+FY+PW    Q L P W++ A  L G+  V +
Sbjct: 541 RNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGS 600

Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQ----GARDVKPIAEFALQQIKALLK 140
           +D  ++ S   +  ++ +P I+ +         Y       RD   +  + L  +     
Sbjct: 601 VDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP---- 656

Query: 141 ERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW 200
                                SI+L    F+E VL+ K  W+V+F+APW G  +  APE+
Sbjct: 657 -------------------QASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF 697

Query: 201 KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP---YEGARTAGA 257
           +  A  +KGKV+ G VDC +      K  ++ +P++ ++  ++           +R A  
Sbjct: 698 ELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKT 757

Query: 258 IESFALEQLET 268
           I +    +LET
Sbjct: 758 IAALIYGKLET 768

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  219 bits (558), Expect = 2e-64
 Identities = 64/371 (17%), Positives = 127/371 (34%), Gaps = 41/371 (11%)

Query: 13  FSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK 72
           +  ++ +     +Y     ++ L    F + V N+  +  V FY+P   H   L P W +
Sbjct: 99  YESWSYYRYDFGIYDDDPEIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWRE 157

Query: 73  AATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132
            A  + G+  + A++  + + L +  G+  +P++ +F  G   V Y G R  + +  FA+
Sbjct: 158 FAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAM 217

Query: 133 QQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGH 192
           Q +++ +                        EL++ NF   +  +     V +   +C  
Sbjct: 218 QHVRSTV-----------------------TELSTGNFVNAIETAFA-AGVGWLITFCSK 253

Query: 193 CKKLAPEW--KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYE 250
            +         + +  L G V +G VDCD++ SL    +     T   F          +
Sbjct: 254 GEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAY-FPPGATLNDREK 312

Query: 251 GARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYL---------EMLL 301
            +             +E     P+   L++  + +       + F+            L 
Sbjct: 313 SSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELK 372

Query: 302 SVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGV-YTPLKSAFELEH 360
            +    K  H   V       P + + + V     P+L     +    Y        L  
Sbjct: 373 KLKTLLKNEHIQVVRFDCSSAPGICSDLYV---FQPSLAVFKGQGTKEYEIHHGKKILYD 429

Query: 361 IVEFVKEAGRG 371
           I+ F KE+   
Sbjct: 430 ILAFAKESVNS 440

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  190 bits (483), Expect = 6e-54
 Identities = 78/385 (20%), Positives = 143/385 (37%), Gaps = 53/385 (13%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-TVAALDA 88
                L+ N  + ++  A+   LV F+  +  +  A  P  +K  T+LK     V   D 
Sbjct: 335 PDFELLSANQLEDRL--AHHRWLVFFH--FGKNENANDPELKKLKTLLKNEHIQVVRFDC 390

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPG--KPPVDYQGARDVKPIAEFALQQIKALLKERLSGK 146
           +    +  +  +   P++ VF     K    + G + +  I  FA               
Sbjct: 391 SSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAK-------------- 435

Query: 147 ATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN 206
                    +S ++    L   NF       K+ W+V+FFAPW    + L PE +KA+  
Sbjct: 436 ---------ESVNSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTL 483

Query: 207 LKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
           L G++K+G +DC   + L + +N+Q +PT +VF  ++ S   YEG  +A  I  F  +  
Sbjct: 484 LYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF--NQSSIHEYEGHHSAEQILEFIEDLR 541

Query: 267 ETNVAPPEVTELTSQDVMEEKCGSAAI--------CFYLEMLLS----VAEKFKRGHYSF 314
             +V    +T  T  ++++++                  ++L+     +A     G  + 
Sbjct: 542 NPSVV--SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT-GLINV 598

Query: 315 VWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKG 374
                G+      +  V    YP +     K        S          ++  G G   
Sbjct: 599 GSVDCGQYHSFCTQENVQ--RYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP 656

Query: 375 NLPLDGTPSIVKTEPWDGKDGQIIE 399
              +D TP     +   GK   +++
Sbjct: 657 QASIDLTPQTFNEKVLQGKTHWVVD 681

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  127 bits (321), Expect = 4e-32
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
              + LTP  F  KVL      +V+FYAPW G  Q   P +E  A ++KG      +D  
Sbjct: 657 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQ 716

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGK----PPVDYQGARDVKPIAEFALQQIKALLKERLSG 145
            +    Q+ GI+ +P++K++   +       +   +RD K IA     +++ L  +    
Sbjct: 717 AYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRN 776

Query: 146 K 146
           K
Sbjct: 777 K 777

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  253 bits (649), Expect = 3e-83
 Identities = 87/250 (34%), Positives = 125/250 (50%), Gaps = 27/250 (10%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA---TVA 84
             + V+ L   NF + V +    VL+EFYAPWCGHC+   P +EK A +LK       VA
Sbjct: 13  EENGVLVLNDANFDNFVAD-KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA 71

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLS 144
            +DA     LA  + + G+PTIK+   G+  VDY+G+R  + I     +  +        
Sbjct: 72  KIDATSASVLASRFDVSGYPTIKILKKGQ-AVDYEGSRTQEEIVAKVREVSQP------- 123

Query: 145 GKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA 204
                            ++ L   NFDE+V    D+ +VEF+APWCGHCKKLAPE++KAA
Sbjct: 124 ---------DWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAA 173

Query: 205 NNLKGK---VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
             L  +   + L  VD  +E  L  +F+V G+PT+ +F   K  P  Y G R    I  +
Sbjct: 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIF--RKGRPYDYNGPREKYGIVDY 231

Query: 262 ALEQLETNVA 271
            +EQ     +
Sbjct: 232 MIEQSGAAAS 241

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  161 bits (409), Expect = 2e-47
 Identities = 70/236 (29%), Positives = 103/236 (43%), Gaps = 26/236 (11%)

Query: 151 SSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK 210
             D    + N  + LN +NFD  V   KD  ++EF+APWCGHCK+ APE++K AN LK K
Sbjct: 6   EDDLEVKEENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK 64

Query: 211 ---VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267
              + +  +D  S   L S+F+V G+PTI +    K   + YEG+RT   I +   E  +
Sbjct: 65  DPPIPVAKIDATSASVLASRFDVSGYPTIKIL--KKGQAVDYEGSRTQEEIVAKVREVSQ 122

Query: 268 TNVAPPE--VTELTSQDV--MEEKCGSAAICFYL----------EMLLSVAEKFKRGHYS 313
            +  PP      LT ++   +        + FY                 A++  +    
Sbjct: 123 PDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPP 182

Query: 314 FVWAA--AGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE 367
              A   A  + DL  R  V   GYP L     +KG         E   IV+++ E
Sbjct: 183 IPLAKVDATAETDLAKRFDVS--GYPTLKIF--RKGRPYDYNGPREKYGIVDYMIE 234

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  227 bits (581), Expect = 3e-71
 Identities = 79/400 (19%), Positives = 131/400 (32%), Gaps = 64/400 (16%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVAT 82
            S +  L   N    +LN   V LV FYA WC   Q L PI+E+A+ V+K          
Sbjct: 4   GSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62

Query: 83  VAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKE 141
            A +D ++H  +AQ Y I  +PT+K+F  G     +Y+G R VK +A++  QQ       
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQK------ 116

Query: 142 RLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWK 201
                            S+   E+         L      I+ +F             ++
Sbjct: 117 -----------------SDPIQEIRDLAEIT-TLDRSKRNIIGYFE---QKDSDNYRVFE 155

Query: 202 KAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIES 260
           + AN L           D  K         G   I          + Y GA        +
Sbjct: 156 RVANILHDDCAFLSAFGDVSK----PERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYN 211

Query: 261 FALEQLETNVAP--PEVTELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFK 308
           +    ++    P   E+T    +++ EE      +            +   +       K
Sbjct: 212 W----IQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEK 267

Query: 309 RGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKG-VYTPLKSAFELEHIVEFVKE 367
            G  +F+ A   K       +       P +   + +   V+   K       + +FV +
Sbjct: 268 -GTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFD 326

Query: 368 AGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDE 407
               GK +      P     +P D   G+  ++   S  E
Sbjct: 327 L-HSGKLHREFHHGP-----DPTDTAPGEQAQDVASSPPE 360

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  222 bits (566), Expect = 4e-70
 Identities = 80/295 (27%), Positives = 121/295 (41%), Gaps = 42/295 (14%)

Query: 22  SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA 81
               Y S   + +LTP +F   + N N   LVEFYAPWCGHC+ L+  + KAA  L GV 
Sbjct: 9   HHNFYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVV 68

Query: 82  TVAAL--DANEHQSLAQEYGIRGFPTIKVFVPGKP-----------------PVDYQGAR 122
            VAA+  D N++++L  +Y + GFPT+ VF P K                     Y GAR
Sbjct: 69  QVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGAR 128

Query: 123 DVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKS---KD 179
            + PI +F+L +I++ +K+ +        S   KS     +  +  +    V KS     
Sbjct: 129 TLAPIVDFSLSRIRSYVKKFVRIDTL--GSLLRKSPKLSVVLFSKQDKISPVYKSIALDW 186

Query: 180 LWIVEFFAPWCGHCKKLA---PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
           L   +F++      K+L    P ++K     K   K+      S+K             +
Sbjct: 187 LGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKL 235

Query: 237 LVFGADKDSPIPYEGAR-TAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGS 290
           +VF ADKD    YEG       I  F  +        P     + +        +
Sbjct: 236 VVFDADKDKFWEYEGNSINKNDISKFLRDTFSIT---PNEGPFSRRSEYIAYLKT 287

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  160 bits (405), Expect = 3e-46
 Identities = 61/283 (21%), Positives = 102/283 (36%), Gaps = 52/283 (18%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216
                  EL   +FD+ +  +    +VEF+APWCGHCKKL+  ++KAA  L G V++  V
Sbjct: 14  DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAV 73

Query: 217 DCD--SEKSLMSKFNVQGFPTILVFGADK----------------DSPIPYEGARTAGAI 258
           +CD    K+L +K++V GFPT++VF   K                 +   Y GART   I
Sbjct: 74  NCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPI 133

Query: 259 ESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYL---------EMLLSVAEKFKR 309
             F+L ++        V +    D +      +     +          +  S+A  +  
Sbjct: 134 VDFSLSRI-----RSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDW-L 187

Query: 310 GHYSFVW-------AAAGKQPDLENRVGVGGYG-----------YPALVALNVKKGVYTP 351
           G + F               P  E    +  Y               LV  +  K  +  
Sbjct: 188 GKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWE 247

Query: 352 LK-SAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGK 393
            + ++     I +F+++         P       +       K
Sbjct: 248 YEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKK 290

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  203 bits (517), Expect = 1e-63
 Identities = 49/243 (20%), Positives = 92/243 (37%), Gaps = 19/243 (7%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---V 80
           ALY  S P+  L  +  +  VL +     VEF+A WCGHC A  P W   A  +K     
Sbjct: 6   ALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPA 65

Query: 81  ATVAALDA--NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
             +AALD     + ++ +++ I GFPT++ F          G+  V P+A   +Q ++  
Sbjct: 66  LYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXN----GSGAVFPVAGADVQTLRER 121

Query: 139 LKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP 198
           L + L              +     E            +++   + F        +++A 
Sbjct: 122 LIDALESHHDTWPPACPPLEPAXLEE----IDGFFARNNEEYLALIFEXGGSYLAREVAL 177

Query: 199 EWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI 258
           +  +       +V       ++E +++ KF V  FP+  +   +           +    
Sbjct: 178 DLSQHKGVAVRRV------LNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFY 231

Query: 259 ESF 261
            ++
Sbjct: 232 TAY 234

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  152 bits (385), Expect = 6e-44
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 24/232 (10%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKL 213
           S S+    L +      VL S+  W VEFFA WCGHC   AP W   A ++K     + L
Sbjct: 9   SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68

Query: 214 GHVDCDSE--KSLMSKFNVQGFPTILVFGADKDSP---IPYEGARTAGAIESFALEQLET 268
             +DC  E   ++   FN+ GFPT+  F A   +    +          +    ++ LE+
Sbjct: 69  AALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128

Query: 269 NV-----APPEVTELTSQDVMEE----KCGSAAICFYLE---MLLSVAEKFKRGHYSFVW 316
           +      A P +     +++            A+ F      +   VA    +     V 
Sbjct: 129 HHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKGVAVR 188

Query: 317 AAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELE-HIVEFVKE 367
                + ++  + GV    +P+   L  + G  + +    E       +++ 
Sbjct: 189 RVLNTEANVVRKFGVT--DFPSCYLLF-RNGSVSRVPVLMESRSFYTAYLQR 237

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 64.6 bits (157), Expect = 4e-12
 Identities = 13/114 (11%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
              P      + F ++  N    + + F        + +     +   V      V  + 
Sbjct: 139 PLEPAXLEEIDGFFAR--NNEEYLALIFEXGGSYLAREVALDLSQHKGV-----AVRRVL 191

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
                ++ +++G+  FP+  +              + +      LQ++  L +E
Sbjct: 192 NT-EANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTRE 244

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  197 bits (501), Expect = 7e-60
 Identities = 52/370 (14%), Positives = 106/370 (28%), Gaps = 61/370 (16%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT--- 82
           Y     VV LT  NFK  +   +  VL  +Y       +     ++    VL+ VA    
Sbjct: 7   YDGKDRVVSLTEKNFKQVLKKYD--VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLE 64

Query: 83  -----VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137
                   +DA +   LA++ G     ++ V    +  +++ G      + EF L  I+ 
Sbjct: 65  HKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIED 123

Query: 138 LLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLA 197
            ++                         +             + ++ FF        +  
Sbjct: 124 PVEII----------------------NSKLEVQAFERIEDQIKLIGFFK---SEESEYY 158

Query: 198 PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
             +++AA + +  +K        +K +  K +++            +     +   T   
Sbjct: 159 KAFEEAAEHFQPYIKFFAT---FDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEE 215

Query: 258 IESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------YLEMLLSVAEK 306
           +  F  E     +    +      +  E+      I             +LE+L  VA  
Sbjct: 216 LVEFVKEHQRPTL--RRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARD 273

Query: 307 FK-RGHYSFVWAAAGKQPDLENRVGVGGY---GYPALVALNV-----KKGVYTPLKSAFE 357
                  S VW      P L              P +  +NV                  
Sbjct: 274 NTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPT 333

Query: 358 LEHIVEFVKE 367
            E + +++++
Sbjct: 334 AEELEDWIED 343

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  200 bits (510), Expect = 8e-60
 Identities = 79/366 (21%), Positives = 150/366 (40%), Gaps = 55/366 (15%)

Query: 30  SPVVQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           S V++LT +NF+S++ +  + G++LVEF+APWCGH + L P +E AAT LKG+  +A +D
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
              + +   +YG+ G+PT+K+F  G+    Y G R    I     +Q             
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP---------- 110

Query: 148 TGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL 207
                         S+ L +    +  +  KD  IV FF            E+ KAA+NL
Sbjct: 111 -------------ASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS---EFLKAASNL 154

Query: 208 KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA------DKDSPIPYEGARTAGAIESF 261
           +   +  H + +   SL+++++  G   IL   +      +  +    E   T+G I+ F
Sbjct: 155 RDNYRFAHTNVE---SLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKF 211

Query: 262 ALEQLETNVAPPEVTELTSQDVMEEKC-----------GSAAICFYLEMLLSVAEKFK-- 308
             E +      P +TE     +  +              +    ++   ++ VA+KF   
Sbjct: 212 IQENIFGIC--PHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDA 269

Query: 309 --RGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPL-KSAFELEHIVEFV 365
             + +++            +  +       P +     K   +    + + + + +  F+
Sbjct: 270 GHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFL 329

Query: 366 KEAGRG 371
           ++   G
Sbjct: 330 QDYFDG 335

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  144 bits (363), Expect = 1e-38
 Identities = 54/273 (19%), Positives = 95/273 (34%), Gaps = 26/273 (9%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-------GVAT 82
                +T +N     L     +L+ +Y          +  W     ++            
Sbjct: 218 GICPHMTEDNKD---LIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLN 274

Query: 83  VAALDANEHQSLAQEYGIR----GFPTIKVFVPG--KPPVDYQGARDVKPIAEFALQQIK 136
            A            ++G+       P + +      K  +  + +RD K +  F      
Sbjct: 275 FAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFD 334

Query: 137 ALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL 196
                  + K    S    +S+      + + NFDE+V       ++EF+APWCGHCK L
Sbjct: 335 G------NLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNL 388

Query: 197 APEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-KDSPIPYEGAR 253
            P++K+    L     + +  +D      + S + V+GFPTI    A+ K +P  YEG R
Sbjct: 389 EPKYKELGEKLSKDPNIVIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGR 447

Query: 254 TAGAIESFALEQLETNVAPPEVTELTSQDVMEE 286
                 S+   +        E      +   E+
Sbjct: 448 ELSDFISYLQREATNPPVIQEEKPKKKKKAQED 480

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 65.3 bits (158), Expect = 1e-11
 Identities = 45/376 (11%), Positives = 101/376 (26%), Gaps = 61/376 (16%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           +    V L       K ++     +V F+             + KAA+ L+     A  +
Sbjct: 108 AGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAH---SEFLKAASNLRDNYRFAHTN 164

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
                 L  EY   G   I    P      ++         +    +IK  ++E      
Sbjct: 165 VES---LVNEYDDNGEGIILFR-PSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE------ 214

Query: 148 TGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKA 203
                    +       +   N D +  K     ++ ++        K +  W       
Sbjct: 215 ---------NIFGICPHMTEDNKDLIQGKD---LLIAYYDVDYEKNAKGSNYWRNRVMMV 262

Query: 204 ANNLKGKVKL---GHVDCDSEKSLMSKFNVQ----GFPTILVFGADKDS-PIPYEGARTA 255
           A                  +    +S F ++      P + +  A  +   +  E +R  
Sbjct: 263 AKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDG 322

Query: 256 GAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSF- 314
            A+E F  +  + N+     +E   +          A  F   +     +     +  + 
Sbjct: 323 KALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWC 382

Query: 315 --------VWAAAGKQPDLENRVGVGGY--------------GYPAL-VALNVKKGVYTP 351
                    +   G++   +  + +                 G+P +  +   KK     
Sbjct: 383 GHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKK 442

Query: 352 LKSAFELEHIVEFVKE 367
            +   EL   + +++ 
Sbjct: 443 YEGGRELSDFISYLQR 458

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  192 bits (490), Expect = 5e-58
 Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 13/245 (5%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL--DA 88
            V++ T               ++ F              ++ AA   KG      +  D 
Sbjct: 118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDH 177

Query: 89  NEHQSLAQEYGIRG--FPTIKVFVPGKPPVDYQ---GARDVKPIAEFALQQIKALLKERL 143
            ++Q + + +G++    P +++    +    Y+        + I EF  + ++  +K  L
Sbjct: 178 TDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHL 237

Query: 144 SGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKA 203
             +      DK          L   NF+++    K    VEF+APWCGHCK+LAP W K 
Sbjct: 238 MSQELPEDWDKQ-----PVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKL 292

Query: 204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA-DKDSPIPYEGARTAGAIESFA 262
               K    +     DS  + +    V  FPT+  F A    + I Y G RT    + F 
Sbjct: 293 GETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 352

Query: 263 LEQLE 267
               +
Sbjct: 353 ESGGQ 357

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  121 bits (305), Expect = 3e-31
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV-- 83
                PV  L   NF+    +    V VEFYAPWCGHC+ L PIW+K     K    +  
Sbjct: 245 DWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 304

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPG--KPPVDYQGARDVKPIAEFALQQIK 136
           A +D+  ++   +   +  FPT+K F     +  +DY G R +    +F     +
Sbjct: 305 AKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQ 357

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  104 bits (260), Expect = 4e-25
 Identities = 51/379 (13%), Positives = 113/379 (29%), Gaps = 64/379 (16%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
            S     L        ++ ++ V ++ F+             + +AA  +  +      +
Sbjct: 15  GSEFATTLPDGAAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAIDDIPFGITSN 71

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
           ++    +  +Y +     +      +   +++G    + + +F       L+        
Sbjct: 72  SD----VFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLV-------- 119

Query: 148 TGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL 207
                          IE       ++        I+ F              +K AA + 
Sbjct: 120 ---------------IEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 164

Query: 208 KGKVKLGHVDCDSE--KSLMSKFNVQG--FPTILVFGADKDS--PIPYEGARTAGAIESF 261
           KGK+    +D D    + ++  F ++    P + +   +++     P     TA  I  F
Sbjct: 165 KGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEF 224

Query: 262 ALEQLETNVAP-------------PEVTELTS---QDVMEEKCGSAAICFYLE------- 298
               LE  + P               V  L     +DV  ++  +  + FY         
Sbjct: 225 CHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQ 284

Query: 299 ---MLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSA 355
              +   + E +K  H + V A      +    V V  +        +  + V       
Sbjct: 285 LAPIWDKLGETYK-DHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVI-DYNGE 342

Query: 356 FELEHIVEFVKEAGRGGKG 374
             L+   +F++  G+ G G
Sbjct: 343 RTLDGFKKFLESGGQDGAG 361

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 69.7 bits (170), Expect = 3e-13
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 33/248 (13%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
            +  L      E +++S ++ ++ FF          A ++ +AA  +   +  G     S
Sbjct: 18  FATTLPDGAAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAIDD-IPFGIT---S 70

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPP--EVTEL 278
              + SK+ +     +++F    +    +EG  T   +  F    ++ N  P   E TE 
Sbjct: 71  NSDVFSKYQLDK-DGVVLFKKFDEGRNNFEGEVTKENLLDF----IKHNQLPLVIEFTEQ 125

Query: 279 TSQDVMEEKCGSAAICFY----------LEMLLSVAEKFK-RGHYSFVWAAAGKQPDLEN 327
           T+  +   +  +  + F           L    + AE FK +  + F+ +       +  
Sbjct: 126 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILE 185

Query: 328 RVGVGGYGYPALVALNVKKGV--YTPLKSAFELEHIVEFVKEAGRG------GKGNLPLD 379
             G+     PA+  + +++ +  Y P       E I EF      G          LP D
Sbjct: 186 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED 245

Query: 380 GTPSIVKT 387
                VK 
Sbjct: 246 WDKQPVKV 253

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  190 bits (484), Expect = 5e-57
 Identities = 51/370 (13%), Positives = 115/370 (31%), Gaps = 61/370 (16%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHC------QALTPIWEKAATVLK- 78
           Y     V+ +   N+K  V     V+ + ++ P           +    I E AA VL+ 
Sbjct: 9   YDGVDRVINVNAKNYK-NVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED 67

Query: 79  GVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
                  +D+ +  ++A++ G+    +I VF   +  ++Y G      + EF L  ++  
Sbjct: 68  KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDE-VIEYDGEFSADTLVEFLLDVLEDP 126

Query: 139 LKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP 198
           ++                                      ++ ++ +F        +   
Sbjct: 127 VEL----------------------IEGERELQAFENIEDEIKLIGYFK---NKDSEHYK 161

Query: 199 EWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEG-ARTAGA 257
            +K+AA      +         +  +  K  ++    I  + A  + P+       +   
Sbjct: 162 AFKEAAEEFHPYIPFFAT---FDSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEE 217

Query: 258 IESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------YLEMLLSVAEK 306
           I +F  E   + +   ++   +  +  E+      I             +LE+L SVA+ 
Sbjct: 218 IVNFVEEHRRSTL--RKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQD 275

Query: 307 FK-RGHYSFVWAAAGKQPDLENRVGVG---GYGYPALVALNV-----KKGVYTPLKSAFE 357
                  S +W      P L              P +  +NV             +    
Sbjct: 276 NTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPS 335

Query: 358 LEHIVEFVKE 367
            E + +++++
Sbjct: 336 AEELEDWLED 345

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  177 bits (451), Expect = 4e-55
 Identities = 61/126 (48%), Positives = 83/126 (65%)

Query: 146 KATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205
             + G+     S S++ IEL  SNF+  V++S  LW+VEF+APWCGHC++L PEWKKAA 
Sbjct: 3   SGSSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAAT 62

Query: 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
            LK  VK+G V+ D  +SL  ++ VQGFPTI +FGA+K+ P  Y+G RT  AI   AL  
Sbjct: 63  ALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSA 122

Query: 266 LETNVA 271
           L +  +
Sbjct: 123 LRSGPS 128

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  175 bits (446), Expect = 2e-54
 Identities = 62/117 (52%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 22  SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA 81
              LY SS  V++LTP+NF  +V+ ++G+ LVEFYAPWCGHCQ LTP W+KAAT LK V 
Sbjct: 9   VSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVV 68

Query: 82  TVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKPIAEFALQQIKA 137
            V A++A++HQSL  +YG++GFPTIK+F   K  P DYQG R  + I + AL  +++
Sbjct: 69  KVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  173 bits (441), Expect = 1e-53
 Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 5/130 (3%)

Query: 155 SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK----GK 210
           S   S + IEL   +FD+ VL S+D+W+VEF+APWCGHCK L PEW  AA+ +K    GK
Sbjct: 2   SSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGK 61

Query: 211 VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
           VKL  VD    + L S++ ++GFPTI +F    +SP+ Y+G RT   I S AL+    N 
Sbjct: 62  VKLAAVDATVNQVLASRYGIRGFPTIKIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNA 120

Query: 271 APPEVTELTS 280
            PPE+ E   
Sbjct: 121 PPPELLESGP 130

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  167 bits (426), Expect = 2e-51
 Identities = 56/117 (47%), Positives = 71/117 (60%), Gaps = 4/117 (3%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK----G 79
              GSS  V++LT ++F   VL++  V +VEFYAPWCGHC+ L P W  AA+ +K    G
Sbjct: 1   GSSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG 60

Query: 80  VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
              +AA+DA  +Q LA  YGIRGFPTIK+F  G+ PVDY G R    I   AL    
Sbjct: 61  KVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  183 bits (465), Expect = 7e-53
 Identities = 63/356 (17%), Positives = 118/356 (33%), Gaps = 33/356 (9%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---V 80
            LY SS P+  L  ++ +  VL ++    VEF+A WCGH  A  P W++ A  +K     
Sbjct: 6   VLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPA 65

Query: 81  ATVAALDA--NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
             +A LD     + ++ +E+ I GFPT++ F                P A   +Q ++  
Sbjct: 66  LNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGAT----LPGAGANVQTLRMR 121

Query: 139 LKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV---EFFAPWCGHCKK 195
           L + L              +         ++ D    ++K  ++    E    + G    
Sbjct: 122 LIDALESHRDTWPPACPPLE-----PAKLNDIDGFFTRNKADYLALVFEREDSYLGREVT 176

Query: 196 LAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA 255
           L      A       V +  V  ++E  L++KF V  FP+  +   +           + 
Sbjct: 177 LDLSQYHA-------VAVRRVL-NTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESR 228

Query: 256 GAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFV 315
               S+           P  T                +  + +         +   +  +
Sbjct: 229 SFYTSYLRGLPGLTRDAPPTTATPVTADKIA----PTVWKFADRSKIYMADLESALHYIL 284

Query: 316 WAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRG 371
               GK   LE +  V    + A     + K           L  I +++++  + 
Sbjct: 285 RVEVGKFSVLEGQRLVALKKFVA----VLAKYFPGQPLVQNFLHSINDWLQKQQKK 336

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  152 bits (384), Expect = 2e-41
 Identities = 54/253 (21%), Positives = 87/253 (34%), Gaps = 18/253 (7%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKL 213
           S S+    L++ +    VL S   W VEFFA WCGH    AP WK+ AN++K     + L
Sbjct: 9   SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68

Query: 214 GHVDCDSE--KSLMSKFNVQGFPTILVFGA---DKDSPIPYEGARTAGAIESFALEQLET 268
             +DC  E   ++  +FN+ GFPT+  F A   +               +    ++ LE+
Sbjct: 69  AVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128

Query: 269 -------NVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGK 321
                     P E  +L   D    +  +  +    E   S   +      S   A A +
Sbjct: 129 HRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQYHAVAVR 188

Query: 322 QPDLENRVGVGGYG---YPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPL 378
           +        V  +G   +P+   L     V               +++      +   P 
Sbjct: 189 RVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPPT 248

Query: 379 DGTPSIVKTEPWD 391
             TP         
Sbjct: 249 TATPVTADKIAPT 261

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  181 bits (461), Expect = 2e-52
 Identities = 80/416 (19%), Positives = 153/416 (36%), Gaps = 73/416 (17%)

Query: 22  SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-V 80
            +A+    S VV+L  ++F    + ++ +VL EF+APWCGHC+ + P + KAA  L    
Sbjct: 6   QEAVAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 64

Query: 81  ATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIKAL 138
            T+A +D  E+Q L  E+ I GFP++K+F        +DY+G R  + I +F ++Q    
Sbjct: 65  ITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ---- 120

Query: 139 LKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP 198
                       S       ++    L +  F   V+        +F A +     K   
Sbjct: 121 ------------SQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFN 168

Query: 199 EWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI 258
           ++   +                     ++     F   +   +  D P+ Y G +   A 
Sbjct: 169 DYDFVS---------------------AENADDDFKLSIYLPSAMDEPVVYNGKKADIAD 207

Query: 259 ESFALEQLETNVAP--PEVTELTSQDVMEEKCGSAAICF--------YLEMLLSVAEKFK 308
                + L+    P   E+        +E       + +        Y  +   +A+K +
Sbjct: 208 ADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNR 267

Query: 309 RGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGV-------------YTPLKSA 355
            G  +FV   A K       + +    +P     ++ + +                 K  
Sbjct: 268 -GLMNFVSIDARKFGRHAGNLNMKEQ-FPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIV 325

Query: 356 FELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMAE 411
            E + I   VK+  +G       D +P +   E ++ +D  + +    + DE++ +
Sbjct: 326 LESKAIESLVKDFLKG-------DASPIVKSQEIFENQDSSVFQLVGKNHDEIVND 374

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  181 bits (461), Expect = 2e-52
 Identities = 53/275 (19%), Positives = 113/275 (41%), Gaps = 17/275 (6%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
             ++  + F       +G+ L   +       +   P++ + A   +G+    ++DA + 
Sbjct: 223 FGEIDGSVFAQ--YVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKF 280

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK-------PIAEFALQQIKALLKERLS 144
              A    ++    +         + Y   +  +              + I++L+K+ L 
Sbjct: 281 GRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK 340

Query: 145 GKATGGSSDKSKSDSNES--IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKK 202
           G A+     +   ++ +S   +L   N DE+V   K   +V ++APWCGHCK+LAP +++
Sbjct: 341 GDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQE 400

Query: 203 AANNLK---GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA-DKDSPIPYEGARTAGAI 258
            A+        V +  +D       +    ++G+PTI+++    K   + Y+G+R+  ++
Sbjct: 401 LADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSL 458

Query: 259 ESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAI 293
             F  E    +V    + E   +   EE    A +
Sbjct: 459 FDFIKENGHFDVDGKALYEEAQEKAAEEADADAEL 493

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  146 bits (370), Expect = 2e-39
 Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 151 SSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK 210
             +    + +  ++L + +F+E  ++S DL + EFFAPWCGHCK +APE+ KAA  L  K
Sbjct: 5   QQEAVAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK 63

Query: 211 -VKLGHVDCDSEKSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQLET 268
            + L  +DC   + L  + N+ GFP++ +F  +D ++ I YEG RTA AI  F ++Q + 
Sbjct: 64  NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP 123

Query: 269 NVAPPEVTE 277
            VA      
Sbjct: 124 AVAVVADLP 132

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  134 bits (337), Expect = 6e-35
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA---TVAAL 86
           S V QL   N    V +    VLV +YAPWCGHC+ L P +++ A           +A L
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417

Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIKALLKERLS 144
           D  E+    +   I G+PTI ++  GK    V YQG+R +  + +F  +     +  +  
Sbjct: 418 DHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKAL 475

Query: 145 GKATGGSSDKSKSDSNESIELNSSNFDEL 173
            +     + +      E  +   +  DEL
Sbjct: 476 YEEAQEKAAEEADADAELADEEDAIHDEL 504

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 72.6 bits (177), Expect = 5e-14
 Identities = 53/435 (12%), Positives = 124/435 (28%), Gaps = 88/435 (20%)

Query: 16  FARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAAT 75
           F       A+   +     L    F + V+  +G +  +F A +          ++  + 
Sbjct: 116 FMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA 175

Query: 76  VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
                                        +I +      PV Y G +     A+   + +
Sbjct: 176 ENADDDFK--------------------LSIYLPSAMDEPVVYNGKKADIADADVFEKWL 215

Query: 136 KALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKK 195
           +                           E++ S F + V     L +   F       ++
Sbjct: 216 Q-------------------VEALPYFGEIDGSVFAQYV--ESGLPLGYLFYNDEEELEE 254

Query: 196 LAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNV-QGFPTILVFGADKDSPIPY----- 249
             P + + A   +G +    +D           N+ + FP   +    +D          
Sbjct: 255 YKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSE 314

Query: 250 --------EGARTAGAIESFALEQLETNVAPP---------------EVTELTSQDVMEE 286
                   +    + AIES   + L+ + +P                ++      +++ +
Sbjct: 315 EAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVND 374

Query: 287 KCGSAAICFYLE----------MLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGY 336
                 + +Y                +A+ +       + A      +    V +   GY
Sbjct: 375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GY 432

Query: 337 PAL-VALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGK-- 393
           P + +    KK      + +  L+ + +F+KE    G  ++         + +  +    
Sbjct: 433 PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE---NGHFDVDGKALYEEAQEKAAEEADA 489

Query: 394 DGQIIEEDEFSLDEL 408
           D ++ +E++   DEL
Sbjct: 490 DAELADEEDAIHDEL 504

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  166 bits (423), Expect = 8e-51
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 147 ATGGSSDKSKSDSNES--IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA 204
           ++G S D       E+    LN  NFD  V   KD  ++EF+APWCGHCK+ APE++K A
Sbjct: 2   SSGSSGDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIA 60

Query: 205 NNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
           + LK     + +  +D  S   L SKF+V G+PTI +    K   + Y+G+RT   I + 
Sbjct: 61  STLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKIL--KKGQAVDYDGSRTQEEIVAK 118

Query: 262 ALEQLETNVAP-PEVTELTS 280
             E  + +  P PEVT   S
Sbjct: 119 VREVSQPDWTPPPEVTSGPS 138

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  148 bits (376), Expect = 8e-44
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVA 84
             + V  L   NF    +     VL+EFYAPWCGHC+   P +EK A+ LK       VA
Sbjct: 15  EENGVWVLNDGNFD-NFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVA 73

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
            +DA     LA ++ + G+PTIK+   G+  VDY G+R  + I     + 
Sbjct: 74  KIDATSASMLASKFDVSGYPTIKILKKGQ-AVDYDGSRTQEEIVAKVREV 122

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  159 bits (404), Expect = 3e-48
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
               + LTP  F  KVL      +V+FYAPWCG CQ   P +E  A ++KG      +D 
Sbjct: 2   PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDC 61

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP----PVDYQGARDVKPIAEFALQQIKALLKE 141
             +    Q+ GI+ +P++K++   +       +   +RD K IA     +++ L  +
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  157 bits (399), Expect = 2e-47
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
              SI+L    F+E VL+ K  W+V+F+APWCG C+  APE++  A  +KGKV+ G VDC
Sbjct: 2   PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDC 61

Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIP---YEGARTAGAIESFALEQLET 268
            +      K  ++ +P++ ++  ++           +R A  I +    +LET
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 114

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  158 bits (401), Expect = 1e-47
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
              GSS PV  +    F + V++    VL+EFYAPWCGHC+ L PI+       KG   +
Sbjct: 1   GSSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDL 60

Query: 84  --AALDANEHQSLAQEYGIRGFPTIKVFVPGK---PPVDYQGARDVKPIAEFALQQI--K 136
             A +DA  +     +Y + GFPTI     G    P     G RD++ +++F  +    +
Sbjct: 61  VIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120

Query: 137 ALLKERLSGKATG 149
           +  KE LSG ++G
Sbjct: 121 SRTKEELSGPSSG 133

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  141 bits (357), Expect = 3e-41
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDS 220
             +    FD +V+  K   ++EF+APWCGHCK+L P +       KG   + +  +D  +
Sbjct: 10  KVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA 69

Query: 221 EKSLMSKFNVQGFPTILVFGA-DKDSPIPYE-GARTAGAIESFALEQLETNVAPPE 274
                 ++ V+GFPTI    + DK +PI +E G R    +  F  E         E
Sbjct: 70  NDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKE 125

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  157 bits (399), Expect = 1e-47
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAA 85
            S V+ LT NNF   +  A G+  ++FYAPWCGHC+ L P WE+ +           +A 
Sbjct: 4   GSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61

Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
           +D    +++  +Y +RG+PT+ +F  GK   ++ G RD+  +  F L Q
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ 110

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  148 bits (377), Expect = 2e-44
 Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 6/106 (5%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCD 219
           + L  +NFD+ +  ++ +  ++F+APWCGHCK LAP W++ +         VK+  VDC 
Sbjct: 8   LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 65

Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
           +E+++ SK++V+G+PT+L+F   K     + G R   ++  F L Q
Sbjct: 66  AERNICSKYSVRGYPTLLLFRGGKK-VSEHSGGRDLDSLHRFVLSQ 110

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  155 bits (394), Expect = 1e-46
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 155 SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKL 213
           S   S     +   N+ EL+   +  W++EF+APWC  C+ L PEW+  A   +  +V +
Sbjct: 2   SSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNI 58

Query: 214 GHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPP 273
             VD   +  L  +F +   PTI            Y+G RT     +F  ++   ++ P 
Sbjct: 59  AKVDVTEQPGLSGRFIINALPTIYHC--KDGEFRRYQGPRTKKDFINFISDKEWKSIEPV 116

Query: 274 E 274
            
Sbjct: 117 S 117

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  150 bits (380), Expect = 1e-44
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-T 82
              GSS  V  +T  N++  +    G  ++EFYAPWC  CQ L P WE  A   + +   
Sbjct: 1   GSSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVN 57

Query: 83  VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKER 142
           +A +D  E   L+  + I   PTI     G+    YQG R  K    F   +    ++  
Sbjct: 58  IAKVDVTEQPGLSGRFIINALPTIYHCKDGE-FRRYQGPRTKKDFINFISDKEWKSIEP- 115

Query: 143 LSGKATGGSS 152
           +S   +G SS
Sbjct: 116 VSSWFSGPSS 125

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  154 bits (391), Expect = 3e-46
 Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 6/112 (5%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA---TVA 84
               V+ L  +NF  + L A+  +LVEFYAPWCGHC+AL P + KAA  LK       +A
Sbjct: 5   EEDHVLVLRKSNFA-EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQ 134
            +DA E   LAQ+YG+RG+PTIK F  G    P +Y   R+   I  +  ++
Sbjct: 64  KVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  153 bits (390), Expect = 3e-46
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKL 213
            + +  + L  SNF E  L +    +VEF+APWCGHCK LAPE+ KAA  LK    +++L
Sbjct: 4   EEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRL 62

Query: 214 GHVDCDSEKSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQL 266
             VD   E  L  ++ V+G+PTI  F   D  SP  Y   R A  I ++  ++ 
Sbjct: 63  AKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  147 bits (374), Expect = 9e-44
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 154 KSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---- 209
                 +  +EL    FD +V+  +    V ++ PW  H       W   + +       
Sbjct: 9   NDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNH 68

Query: 210 -KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA-DKDSPIPYEGARTAGAIESFALEQ 265
                  +D +    ++ +  V GFPT+  +   DK  P  Y G R    ++SF  + 
Sbjct: 69  LTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  147 bits (373), Expect = 1e-43
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-----TVA 84
           S VV+LT   F S V++    V V +Y PW  H  A   +W+  +              A
Sbjct: 15  SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQ 134
            +D  ++  + +   + GFPT++ +       P +Y G R +  +  F  Q 
Sbjct: 75  RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  137 bits (346), Expect = 9e-40
 Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-- 81
              GS  PV  +   N+   VL+    VL+EFYAPWCGHC+AL P +E+   +       
Sbjct: 1   GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK 60

Query: 82  ---TVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIK 136
               +A +DA  +        I+GFPTIK++  G    PV Y G+R V+ + +F  +  K
Sbjct: 61  DRVVIAKVDATANDV---PDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  131 bits (331), Expect = 2e-37
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 156 KSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA-----NNLKGK 210
                    + + N++E+VL      ++EF+APWCGHCK LAP++++       +  K +
Sbjct: 3   LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR 62

Query: 211 VKLGHVDCDSEKSLMSKFNVQGFPTILVFGA-DKDSPIPYEGARTAGAIESFALEQLETN 269
           V +  VD  +         +QGFPTI ++ A  K  P+ Y G+RT   +  F  E  +  
Sbjct: 63  VVIAKVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK 119

Query: 270 VA 271
            A
Sbjct: 120 AA 121

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score =  139 bits (351), Expect = 3e-39
 Identities = 35/232 (15%), Positives = 64/232 (27%), Gaps = 31/232 (13%)

Query: 42  SKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-----TVAALDANEHQSLAQ 96
            K       + +   A  C  CQ    + ++   V+          +       H+   +
Sbjct: 16  QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75

Query: 97  EYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSK 156
           +YG+   PTI +       + Y G                                    
Sbjct: 76  KYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGI---------------------F 114

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216
             S    +L+    + L +    + I  F    CG+C   A      A      +    +
Sbjct: 115 HVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFA-LANDYITSKVI 173

Query: 217 DCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLET 268
           D    + L  +F V G P I++          + GA+   A   + +   E 
Sbjct: 174 DASENQDLAEQFQVVGVPKIVI----NKGVAEFVGAQPENAFLGYIMAVYEK 221

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 85.9 bits (212), Expect = 2e-19
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 22/211 (10%)

Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA-----NNLKGKVKLGHVDCDSEKSLMS 226
           +   K      +   A  C  C+      K+          + K+KL      + K    
Sbjct: 16  QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75

Query: 227 KFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTE-------LT 279
           K+ V   PTI++ G DKD  I Y G        +        +   P+++E       + 
Sbjct: 76  KYGVDRVPTIVIEG-DKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVV 134

Query: 280 SQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAA--AGKQPDLENRVGVGGYGYP 337
              +      + + C Y      +A  F   +         A +  DL  +  V   G P
Sbjct: 135 DIPIEIWVFVTTS-CGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQV--VGVP 191

Query: 338 ALVALNVKKGVYTPLKSAFELEHIVEFVKEA 368
            +V +N     +     A      + ++   
Sbjct: 192 KIV-INKGVAEFV---GAQPENAFLGYIMAV 218

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 75.5 bits (185), Expect = 6e-16
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 20  NLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG 79
            L + ++  S    QL+    +   +    + +  F    CG+C +   +    A +   
Sbjct: 108 TLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFA-LAND 166

Query: 80  VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL 139
             T   +DA+E+Q LA+++ + G P I   +      ++ GA+       + +   + L 
Sbjct: 167 YITSKVIDASENQDLAEQFQVVGVPKI--VINKG-VAEFVGAQPENAFLGYIMAVYEKLK 223

Query: 140 KERLSG 145
           +E+   
Sbjct: 224 REKEQA 229

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  126 bits (317), Expect = 4e-34
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 32/188 (17%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-------KV 211
           +  ++ L++  F +++ KSK   +V+F   +    K+   E+K+ A N          +V
Sbjct: 4   TKGALPLDTVTFYKVIPKSKF-VLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEV 60

Query: 212 KLGHVDCDSEKSLMSKFNVQ--GFPTILVFGA-DKDSPIPYEGARTAGAIESFALEQLET 268
            +          L  K+ +    +P   +F   D ++P+PY GA   GAI+ +   Q   
Sbjct: 61  GISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVY 120

Query: 269 NVAPPEVTELTS--QDVMEEKCGSAAICF-----------------YLEMLLSVAEKFKR 309
              P  +    +   + +      A                     + E  L +  K   
Sbjct: 121 LGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILD 180

Query: 310 GHYSFVWA 317
               F  +
Sbjct: 181 QGEDFPAS 188

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  121 bits (305), Expect = 2e-32
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 17/217 (7%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-----VAT 82
            +   + L    F  KV+  +  VLV+F   +    +     +++ A          VA 
Sbjct: 3   HTKGALPLDTVTFY-KVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAE 59

Query: 83  VAA--LDANEHQSLAQEYGI--RGFPTIKVFVPG--KPPVDYQGARDVKPIAEFALQQIK 136
           V         +  L+++Y +    +P   +F  G  + PV Y GA  V  I  +   Q  
Sbjct: 60  VGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGV 119

Query: 137 ALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDL--WIVEFFAPWCGHCK 194
            L            + +  ++   E+ +       + +   K+      E +    G   
Sbjct: 120 YLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKIL 179

Query: 195 KLAPEW-KKAANNLKGKVKLGHVDCDSEKSLMSKFNV 230
               ++       +   ++   +    ++ L    N+
Sbjct: 180 DQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNI 216

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  129 bits (324), Expect = 2e-33
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 13/189 (6%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG--- 79
            L+   S VV L+ ++F      A     +V FY   CG C+     + K A  LK    
Sbjct: 17  GLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHG 76

Query: 80  -----VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK--PPVDYQGARDVKPIAEFAL 132
                +AT AA++      L ++Y I   P +  F P       +  G   ++ +A    
Sbjct: 77  KDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENS 136

Query: 133 QQIKALLKERLSGKATG--GSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWC 190
                 L+  +           D  K    +      ++ +ELV +S             
Sbjct: 137 HLEVDELESEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSSTDESGRFVET 196

Query: 191 GHCKKLAPE 199
                    
Sbjct: 197 TELYATDIA 205

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  128 bits (321), Expect = 5e-33
 Identities = 44/276 (15%), Positives = 91/276 (32%), Gaps = 17/276 (6%)

Query: 143 LSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDL-WIVEFFAPWCGHCKKLAPEWK 201
           ++  ATG          +  ++L+  +F  +   +    WIV F+   CG C++ A  + 
Sbjct: 6   VAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFS 65

Query: 202 KAANNLKGK--------VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253
           K A  LK +             V+C SE  L  K+++   P +  F          E   
Sbjct: 66  KFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGT 125

Query: 254 TAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYS 313
           ++    +F    LE +    EV  L ++ ++ +    +     ++M   +    +     
Sbjct: 126 SSLEHVAFENSHLEVDELESEVRRLVNKHMVVD---DSLKERCIDMHFKLYTSKEELVKR 182

Query: 314 FVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGK 373
            V +       +E           A  +           +    L  + +FV        
Sbjct: 183 SVSSTDESGRFVETTELYATDIAGAFFSAMHYDVSLVGTEPRERLTALEDFVLLVKD--- 239

Query: 374 GNLPLDGTPSIVKT-EPWDGKDGQIIEEDEFSLDEL 408
            +LP  G   +V   E    +    +   + ++ + 
Sbjct: 240 -SLPSIGADGVVSALESITAERPFTVASWQDAVVKS 274

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 96.3 bits (240), Expect = 3e-24
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 25  LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
           +  + S +++     +  +V ++   V+V FY+P C +C+A+ P +E+ A      A   
Sbjct: 1   MSLNGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFG 60

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
            ++   +   A++YG++G PT K F  G+P
Sbjct: 61  RINIATNPWTAEKYGVQGTPTFKFFCHGRP 90

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 84.4 bits (209), Expect = 6e-20
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217
           + +  IE     + + V  SK   +V F++P C +CK + P +++ A         G ++
Sbjct: 4   NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRIN 63

Query: 218 CDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETNVAPPEV 275
             +      K+ VQG PT   F  G      +   G      +++   + L+        
Sbjct: 64  IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQV---GQIYPSILKNAVRDMLQHGEECIRK 120

Query: 276 TELTSQDV 283
           +    QD+
Sbjct: 121 STPVGQDI 128

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 95.9 bits (239), Expect = 3e-24
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 10  LTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI 69
           LT  + F ++ L         P +Q   +N  + V   N V+++ F+A WC  C   +  
Sbjct: 7   LTPLNRFDKYYLR---MFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTE 63

Query: 70  WEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
            +K          +  +D ++++SLA+++ ++  PTI +      
Sbjct: 64  MDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTM 108

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 86.3 bits (214), Expect = 1e-20
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           ++ N SN    V     + ++ FFA WC  C   + E  K       ++ L  VD D  +
Sbjct: 27  LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE 86

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
           SL  KF+V+  PTI++                 ++  + + 
Sbjct: 87  SLARKFSVKSLPTIILLKNKTMLARKD---HFVSSNDLIAL 124

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 96.4 bits (240), Expect = 5e-24
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           +  V        ++    +  +LV+F+APWCG C+ + P ++ AA  L G   +A +D  
Sbjct: 46  TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQ 105

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
            H ++A  + I+G P   +F  G+      GAR           ++   ++ +L  +A
Sbjct: 106 AHPAVAGRHRIQGIPAFILFHKGRELARAAGAR--------PASELVGFVRGKLGARA 155

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 84.8 bits (210), Expect = 7e-20
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 140 KERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPE 199
            +RL+     G            +            +     +V+F+APWCG C+++AP+
Sbjct: 28  SDRLAAGPKCGICGAGLITG--KVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQ 85

Query: 200 WKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGA 257
           ++ AA  L G+V+L  +D  +  ++  +  +QG P  ++F  G +        GAR A  
Sbjct: 86  FQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAA---GARPASE 142

Query: 258 IESFALEQL 266
           +  F   +L
Sbjct: 143 LVGFVRGKL 151

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 99.5 bits (248), Expect = 7e-24
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           S   +V +  +N +  +  +    VL  F++    HC  LTPI E  A    G   +A L
Sbjct: 5   SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKL 64

Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           D +  Q +A ++G+R  PT+ +F  G+P   +QG +  + I   
Sbjct: 65  DCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRAL 108

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 88.3 bits (219), Expect = 5e-20
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 18/163 (11%)

Query: 155 SKSDSNESIELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL 213
           S       + +N SN  +++ +S     +  F++    HC +L P  +  A    G+  L
Sbjct: 2   SHMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFIL 61

Query: 214 GHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP-YEGARTAGAIESF----------- 261
             +DCD+E+ + ++F ++  PT+ +F   +  P+  ++G +   AI +            
Sbjct: 62  AKLDCDAEQMIAAQFGLRAIPTVYLFQNGQ--PVDGFQGPQPEEAIRALLDXVLPREEEL 119

Query: 262 ---ALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYLEMLL 301
                 QL       +   L                   E L+
Sbjct: 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI 162

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
             VV+     F  +V  A  + LV+F+APWCG C+ ++PI E+ A    G   V  ++ +
Sbjct: 33  PWVVEADEKGFAQEVAGA-PLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD 91

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137
           EH  LA  YG+R  PT+ +F  G P   + GA   + + E     ++ 
Sbjct: 92  EHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEG 139

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 86.3 bits (214), Expect = 1e-20
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 154 KSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL 213
             K+     +E +   F + V  +  L +V+FFAPWCG C+ ++P  ++ A +  G++K+
Sbjct: 27  ACKTPLPWVVEADEKGFAQEVAGA-PLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKV 85

Query: 214 GHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLE 267
             V+ D    L +++ V+  PT+++F  GA   + +   GA     +E      LE
Sbjct: 86  VKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWV---GASPRRVLEERLRPYLE 138

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 96.1 bits (239), Expect = 3e-23
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 13  FSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK 72
           +  ++ +     +Y     ++ L    F    +N+  +  V FY+P C HC  L P W +
Sbjct: 80  YESWSYYRYDFGIYDDDPEIITLERREF-DAAVNSGELWFVNFYSPGCSHCHDLAPTWRE 138

Query: 73  AATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132
            A  + G+  + A++  + + L +  G+  +P++ +F  G   V Y G R  + +  FA+
Sbjct: 139 FAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAM 198

Query: 133 QQIKALLKE 141
           Q +++ + E
Sbjct: 199 QHVRSTVTE 207

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 149 GGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK 208
                    D  E I L    FD  V  S +LW V F++P C HC  LAP W++ A  + 
Sbjct: 86  YRYDFGIYDDDPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD 144

Query: 209 GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLET 268
           G +++G V+C  ++ L     V  +P++ +F +     + Y G R+  ++ +FA++ +  
Sbjct: 145 GLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAFAMQHV-- 201

Query: 269 NVAPPEVTELTS 280
                 VTEL++
Sbjct: 202 ---RSTVTELST 210

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 92.4 bits (230), Expect = 4e-23
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           + +L  N F+  + +     LV F    C  CQ +TP+ E+     +       +D  E 
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEE 65

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
           ++L Q + ++G P I  F  G+      G  +   + +     I  +L++
Sbjct: 66  KTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQM----IADVLED 111

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
            +L+++ F++L+       +V F    C  C+K+ P  ++   N +      +VD + EK
Sbjct: 7   EKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK 66

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLE 267
           +L  +F+++G P IL F  G  K       G      +E    + LE
Sbjct: 67  TLFQRFSLKGVPQILYFKDGEYKGKMA---GDVEDDEVEQMIADVLE 110

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 92.4 bits (230), Expect = 5e-23
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAA 85
           +  S+        +F+ +V+N+   V+V+F+A WCG C+ L P  EK      G   +A 
Sbjct: 9   HHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAK 68

Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           +D ++H  LA EY +   PT+     G     + G +D   +  F
Sbjct: 69  VDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAF 113

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           +  +F + V+ S+   +V+F A WCG CK L P  +K      GKV +  VD D    L 
Sbjct: 19  DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLA 78

Query: 226 SKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
            ++ V   PT+L    G   D  +   G +    +E+F
Sbjct: 79  IEYEVSAVPTVLAMKNGDVVDKFV---GIKDEDQLEAF 113

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 92.0 bits (229), Expect = 7e-23
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  V+ +T   F+S+VL A   VLV F+A WCG CQ ++P+   AA        V  L+ 
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           + + +  ++Y + G P +++    + 
Sbjct: 66  DPNPTTVKKYKVEGVPALRLVKGEQI 91

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S   I +  + F+  VLK++   +V F+A WCG C+ ++P    AAN    ++K+  ++ 
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65

Query: 219 DSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETN 269
           D   + + K+ V+G P + +       DS     G  +   + SF    L  N
Sbjct: 66  DPNPTTVKKYKVEGVPALRLVKGEQILDSTE---GVISKDKLLSFLDTHLNNN 115

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 91.6 bits (228), Expect = 8e-23
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           +  +  +T ++F+  VL  +  VLV+F+A WCG C+ + P  E  A        +  L+ 
Sbjct: 4   AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNI 63

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           +E+   A +YG+   PT+ V+  G+ 
Sbjct: 64  DENPGTAAKYGVMSIPTLNVYQGGEV 89

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           +     +   +F++ VLK+    +V+F+A WCG C+++AP  +  A     K+++  ++ 
Sbjct: 4   AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNI 63

Query: 219 DSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQL 266
           D      +K+ V   PT+ V+  G    + +   GA+   AI     + +
Sbjct: 64  DENPGTAAKYGVMSIPTLNVYQGGEVAKTIV---GAKPKAAIVRDLEDFI 110

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 90.8 bits (226), Expect = 1e-22
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V  +  +++K  VL +   V+V+F+APWCG C+ + P+ ++ A    G   V  L+ +E 
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
             +A +Y IR  PT+  F  G+ 
Sbjct: 62  PGIATQYNIRSIPTVLFFKNGER 84

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
            ++N S++ E VL+S+   +V+F+APWCG CK +AP   + A    GK+ +  ++ D   
Sbjct: 3   QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
            + +++N++  PT+L F  G  K+S I   GA     +   
Sbjct: 63  GIATQYNIRSIPTVLFFKNGERKESII---GAVPKSTLTDS 100

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 94.1 bits (234), Expect = 2e-22
 Identities = 38/109 (34%), Positives = 62/109 (56%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 11  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137
           +++   A +YGIRG PT+ +F  G+      GA     + EF    +  
Sbjct: 71  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAG 119

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 84.1 bits (208), Expect = 6e-19
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ 
Sbjct: 11  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70

Query: 219 DSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETN------- 269
           D       K+ ++G PT+L+F  G    + +   GA + G ++ F    L  +       
Sbjct: 71  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKV---GALSKGQLKEFLDANLAGSAMESTVM 127

Query: 270 -----VAPPEVTELTSQDVMEEKCG 289
                V P ++ +    +V EE CG
Sbjct: 128 VLRNMVDPKDIDDDLEGEVTEE-CG 151

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
              V+  T      K+L  +  ++++F+APWCG C++  PI+ + A    G      ++ 
Sbjct: 37  DGEVINATAETLD-KLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137
               +L+  + IR  PTI ++  GK      GA    P   +  +Q+  
Sbjct: 96  EAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSR 144

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 7/129 (5%)

Query: 140 KERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPE 199
           +ER+   A  G          E I   +   D+ +L+     +++F+APWCG C+  AP 
Sbjct: 19  EERIDDGAKCGRC-GHSLFDGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPI 76

Query: 200 WKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGA 257
           + + A    GKV+   V+ ++E +L ++F ++  PTI+++  G   D      GA     
Sbjct: 77  FAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLN---GAVPKAP 133

Query: 258 IESFALEQL 266
            +++  EQL
Sbjct: 134 FDNWLDEQL 142

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S   + ++ ++F   VL A+G+VLV+F+A WCG C+ + P   +      G  TVA ++ 
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           +++      Y +R  PT+ +   GK 
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDGKV 86

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S  ++ ++ S+FD+ VLK+  L +V+F+A WCG CK + P   +      GKV +  V+ 
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60

Query: 219 DSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
           D      + + V+  PT+++   G   D  +   GA     ++++
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDGKVIDKKV---GALPKSQLKAW 102

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 90.1 bits (224), Expect = 2e-22
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           S +  +T               +V F+   C HC+ +  + +K       V  ++++D+ 
Sbjct: 2   SAIRDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQV-AISSVDSE 59

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
               L +E G    PT+     GK    + G  + + +       I 
Sbjct: 60  ARPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQAL-YASIH 105

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
            ++ +        +     IV F    C HCK +     K       +V +  VD ++  
Sbjct: 5   RDITTEAGMA-HFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA-PQVAISSVDSEARP 62

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYE--GARTAGAIESFALEQLETN 269
            LM +   +  PT++     +D  +     G      +++     +  +
Sbjct: 63  ELMKELGFERVPTLVFI---RDGKVAKVFSGIMNPRELQAL-YASIHHH 107

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 89.6 bits (223), Expect = 3e-22
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
              +  + FK+ VL ++  VLV+F+APWCG C+ + P+ ++ A   K       L+ +E 
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
            ++A EYGIR  PTI VF  GK 
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKK 85

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E+  +N   F  +VL+S    +V+F+APWCG C+ +AP   + A   K K+K   ++ D 
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 221 EKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
             ++ S++ ++  PTI+VF  G   ++ I   GA     I   
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETII---GAVPKATIVQT 101

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 89.6 bits (223), Expect = 3e-22
 Identities = 34/86 (39%), Positives = 56/86 (65%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           +++   A +YGIRG PT+ +F  G+ 
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEV 86

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 79.6 bits (197), Expect = 1e-18
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 219 DSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETNVA 271
           D       K+ ++G PT+L+F  G    + +   GA + G ++ F    L+ N+A
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKV---GALSKGQLKEF----LDANLA 108

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 90.5 bits (225), Expect = 3e-22
 Identities = 33/86 (38%), Positives = 55/86 (63%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG  + + PI ++ A   +G  TVA L+ 
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           +++   A +YGIRG PT+ +F  G+ 
Sbjct: 81  DQNPGTAPKYGIRGIPTLLLFKNGEV 106

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 151 SSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK 210
                 S S++ I L   +FD  VLK+    +V+F+A WCG  K +AP   + A+  +GK
Sbjct: 13  GLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK 72

Query: 211 VKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQL 266
           + +  ++ D       K+ ++G PT+L+F  G    + +   GA + G ++ F    L
Sbjct: 73  LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV---GALSKGQLKEFLDANL 127

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 90.1 bits (224), Expect = 3e-22
 Identities = 30/86 (34%), Positives = 51/86 (59%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
            S  +++T  +F + VL++N  VLV+F+A WCG C+ + P+ E+ AT      TVA LD 
Sbjct: 11  KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 70

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP 114
           + +   A+ + +   PT+ +F  G+P
Sbjct: 71  DTNPETARNFQVVSIPTLILFKDGQP 96

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 155 SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG 214
           + S+ + +I++  ++F   VL S    +V+F+A WCG CK +AP  ++ A      + + 
Sbjct: 7   TDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVA 66

Query: 215 HVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
            +D D+       F V   PT+++F  G      +   GA+   A+   
Sbjct: 67  KLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIV---GAKGKAALLRE 112

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 89.6 bits (223), Expect = 3e-22
 Identities = 32/83 (38%), Positives = 54/83 (65%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V+++T  NF+ +VL ++  VLV+F+APWCG C+ + PI E+ A   +G   V  ++ +E+
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
            + A +YGIR  PT+ +F  G+ 
Sbjct: 63  PNTAAQYGIRSIPTLLLFKNGQV 85

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           IE+   NF++ VLKS    +V+F+APWCG C+ +AP  ++ A   +GKVK+  V+ D   
Sbjct: 4   IEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
           +  +++ ++  PT+L+F  G   D  +   GA+   A++  
Sbjct: 64  NTAAQYGIRSIPTLLLFKNGQVVDRLV---GAQPKEALKER 101

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
               + LT  NF   V+  N +VLV+ +A WC  C    PI++K A   KG A    L+ 
Sbjct: 3   EDVTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLK 140
           +E+Q +A +Y +   PT  +FV G+      GA D   +       +   LK
Sbjct: 62  DENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLEST----VNKYLK 109

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 81.2 bits (201), Expect = 4e-19
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
            + ++ L   NFDE V+++  L +V+ +A WC  C    P +KK A   KGK   G ++ 
Sbjct: 3   EDVTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61

Query: 219 DSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLE 267
           D  + +  K++V   PT L+F  G   DS +   GA     +ES   + L+
Sbjct: 62  DENQKIADKYSVLNIPTTLIFVNGQLVDSLV---GAVDEDTLESTVNKYLK 109

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 88.3 bits (219), Expect = 3e-21
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           V     N +      +   +V+FYA WCG C+ + PI ++ A    G   +  +D  + Q
Sbjct: 23  VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ 82

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGG 150
            LA  +GIR  P+I        P   QGA   K          K  + E L  K    
Sbjct: 83  ELAGAFGIRSIPSILFIPMEGKPEMAQGAMP-K-------ASFKKAIDEFLLKKEGHH 132

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 77.9 bits (192), Expect = 1e-17
 Identities = 24/85 (28%), Positives = 42/85 (49%)

Query: 155 SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG 214
           +K++    +     N +E   +     IV+F+A WCG CK +AP   + A    G++ + 
Sbjct: 15  TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIY 74

Query: 215 HVDCDSEKSLMSKFNVQGFPTILVF 239
            VD + E+ L   F ++  P+IL  
Sbjct: 75  KVDTEKEQELAGAFGIRSIPSILFI 99

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           +  +++T  NF    L  + +VLV+F+A WC  C+ + PI E+ A   +G   VA LD +
Sbjct: 1   AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVD 59

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKP 114
           E+   A  Y +   PT+ +F  G+P
Sbjct: 60  ENPKTAMRYRVMSIPTVILFKDGQP 84

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 75.4 bits (186), Expect = 4e-17
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           IE+   NFDE  L    L +V+F+A WC  C+ +AP  ++ A   +GK+ +  +D D   
Sbjct: 4   IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP 62

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETNVAPP 273
               ++ V   PT+++F  G   +  +   GA+     ++     +E ++   
Sbjct: 63  KTAMRYRVMSIPTVILFKDGQPVEVLV---GAQPKRNYQAK----IEKHLPAT 108

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 86.0 bits (213), Expect = 2e-20
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-------VATVA 84
           ++ +TP  F+  +    G  ++  Y+  C HC    P   +A+  +          + + 
Sbjct: 18  LIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIG 74

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
             + +  +    + G+ G PT+  +  G+ 
Sbjct: 75  ERELSAARLEMNKAGVEGTPTLVFYKEGRI 104

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVK----- 212
           +    I +    F +L+       I+  ++  C HC +  P+  +A+  +   +      
Sbjct: 14  EDGRLIYITPEEFRQLLQGDA---ILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWG 70

Query: 213 --LGHVDCDSEKSLMSKFNVQGFPTILVF 239
             +G  +  + +  M+K  V+G PT++ +
Sbjct: 71  SLIGERELSAARLEMNKAGVEGTPTLVFY 99

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
            + LT  NF+   +  +G VLV+F+A WCG C+ + P+ E+ A       TVA L+ +E+
Sbjct: 2   TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
                ++GI   PT+ +F  G+P
Sbjct: 61  PETTSQFGIMSIPTLILFKGGRP 83

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           + L  +NF +  ++     +V+F+A WCG C+ +AP  ++ A     KV +  ++ D   
Sbjct: 3   MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLE 267
              S+F +   PT+++F  G      I   G +    +E+   + L+
Sbjct: 62  ETTSQFGIMSIPTLILFKGGRPVKQLI---GYQPKEQLEAQLADVLQ 105

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           +V++T  +F SKV +  GV LV+F+A  CG C+ + P+ E+ A   +G A +  LD +E+
Sbjct: 5   IVKVTDADFDSKVES--GVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDEN 62

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
            S A +Y +   PT+ VF  G+P
Sbjct: 63  PSTAAKYEVMSIPTLIVFKDGQP 85

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++  ++FD  V     L  V+F+A  CG CK +AP  ++ A + +GK  +  +D D   
Sbjct: 6   VKVTDADFDSKVESGVQL--VDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
           S  +K+ V   PT++VF  G   D  +   G +    +   
Sbjct: 64  STAAKYEVMSIPTLIVFKDGQPVDKVV---GFQPKENLAEV 101

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 84.9 bits (210), Expect = 4e-20
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 28  SSSPVVQLTPNNFKSKVLN-----------ANGVVLVEFYAPWCGHCQALTPIWEKAATV 76
             S  + LT   F  K+ +            +   +V+FYA WCG C+ + PI E+ +  
Sbjct: 20  PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKE 79

Query: 77  LKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
             G   +  ++ ++   LA+++GI+  PTI        P    GA
Sbjct: 80  YAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGA 124

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 144 SGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLW-----------IVEFFAPWCGH 192
           +   T   + +++   + +I L  + F + +   ++             IV+F+A WCG 
Sbjct: 6   NKSTTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGP 65

Query: 193 CKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
           CK +AP  ++ +    GK+ +  V+ D E  L   F +Q  PTI   
Sbjct: 66  CKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFV 112

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 83.9 bits (208), Expect = 5e-20
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           +V+ T  +F ++   + GVVL +F+APWCG  + + P+ E+    +     +  +D +E+
Sbjct: 3   IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
           Q  A +YG+   PT+ V   G+ 
Sbjct: 61  QETAGKYGVMSIPTLLVLKDGEV 83

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           ++    +F      S+ + + +F+APWCG  K +AP  ++    +  K+K+  +D D  +
Sbjct: 4   VKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ 61

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETNVAPPE 274
               K+ V   PT+LV   G   ++ +   G +   A++      +  ++    
Sbjct: 62  ETAGKYGVMSIPTLLVLKDGEVVETSV---GFKPKEALQEL----VNKHLLEHH 108

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 87.1 bits (215), Expect = 6e-20
 Identities = 45/224 (20%), Positives = 74/224 (33%), Gaps = 29/224 (12%)

Query: 50  VVLVEFYAP-WCGHCQALTPIWEK-AATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107
           V L+ F     C +C  L  + ++ +    K    +   D  E + LA+ Y I   P   
Sbjct: 24  VKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATT 83

Query: 108 VFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELN 166
           +   GK   V Y G       A F    ++ ++                   S E   L 
Sbjct: 84  ITQDGKDFGVRYFGLPAGHEFAAF----LEDIVDV-----------------SREETNLM 122

Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA----NNLKGKVKLGHVDCDSEK 222
                 +    +D+ I+ F  P C +C        K A       KGK+    V+     
Sbjct: 123 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP 182

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
               ++NV   P I++   + +  + +EGA          L  L
Sbjct: 183 EWADQYNVMAVPKIVIQV-NGEDRVEFEGAYPEKMFLEKLLSAL 225

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 77.8 bits (191), Expect = 1e-16
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 23  DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAAT----VLK 78
           + +   S     L     ++       V ++ F  P C +C     +  K A       K
Sbjct: 109 EDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGK 168

Query: 79  GVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
           G      ++A E+   A +Y +   P I + V G+  V+++GA    P   F L+++ + 
Sbjct: 169 GKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAY---PEKMF-LEKLLSA 224

Query: 139 L 139
           L
Sbjct: 225 L 225

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 45.9 bits (108), Expect = 7e-06
 Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 18/202 (8%)

Query: 182 IVEFFAP-WCGHCKKLAPEWKKAAN-NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
           ++ F     C +C +L    ++ +    K   ++   D    K L  ++ +   P   + 
Sbjct: 26  LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT 85

Query: 240 GADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEK------------ 287
              KD  + Y G        +F  + ++ +     + + T Q +                
Sbjct: 86  QDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPT 145

Query: 288 CG-SAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKK 346
           C                  K  +G        A + P+  ++  V     P +V + V  
Sbjct: 146 CPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNV--MAVPKIV-IQVNG 202

Query: 347 GVYTPLKSAFELEHIVEFVKEA 368
                 + A+  +  +E +  A
Sbjct: 203 EDRVEFEGAYPEKMFLEKLLSA 224

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 83.2 bits (206), Expect = 1e-19
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE 90
           V  ++  +   +V   + VV+++F+A WCG C+ + P++EK +    G       +D +E
Sbjct: 17  VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE 76

Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
              +AQE GIR  PT   F  G+      GA 
Sbjct: 77  QSQIAQEVGIRAMPTFVFFKNGQKIDTVVGAD 108

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE 221
             ++S +  + V     + +++F+A WCG CK + P ++K ++   G KV    VD D +
Sbjct: 18  QVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ 77

Query: 222 KSLMSKFNVQGFPTILVF 239
             +  +  ++  PT + F
Sbjct: 78  SQIAQEVGIRAMPTFVFF 95

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDAN 89
           PV   T +++  +V   +GV+L+               +  +           VA  D  
Sbjct: 21  PVEASTVDDWIKRV--GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 78

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL 139
           + +++   + +R FP   VF  GK      G      +    L  +++++
Sbjct: 79  QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAEL----LTLMRSIV 124

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 73.3 bits (180), Expect = 7e-16
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 164 ELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE 221
            + +S  D+ + +  D + ++                  +          ++   D +  
Sbjct: 21  PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS 80

Query: 222 KSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLETNVAPPEV 275
           +++  +FNV+ FP  LVF  G  + +     G      + +     ++T  A   V
Sbjct: 81  EAIGDRFNVRRFPATLVFTDGKLRGA---LSGIHPWAELLTLMRSIVDTPAAQETV 133

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 82.4 bits (204), Expect = 1e-19
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V+ L   NF S  L ++ + +V+F+A WC  C  L PI E+ A     V     L+++E+
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQV-GFGKLNSDEN 58

Query: 92  QSLAQEYGIRGFPTIKVFVPGKP 114
             +A  YG+   PT+  F  G+P
Sbjct: 59  PDIAARYGVMSLPTVIFFKDGEP 81

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I L+S NFD   L S ++ +V+F+A WC  C  LAP  ++ A +   +V  G ++ D   
Sbjct: 2   IHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENP 59

Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESF 261
            + +++ V   PT++ F  G   D  I   GA     IE  
Sbjct: 60  DIAARYGVMSLPTVIFFKDGEPVDEII---GAVPREEIEIR 97

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 82.9 bits (205), Expect = 1e-19
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCG--------------HCQALTPIWEKAA 74
           S  ++ LT ++F + VL A+G +LV+F+A WCG               C+ + PI ++ A
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61

Query: 75  TVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
              +G  TVA L+ +++   A +YGIRG PT+ +F  G+ 
Sbjct: 62  DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 101

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 23/129 (17%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCG--------------HCKKLAPEWKKAA 204
           S++ I L   +FD  VLK+    +V+F+A WCG               CK +AP   + A
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61

Query: 205 NNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFA 262
           +  +GK+ +  ++ D       K+ ++G PT+L+F  G    + +   GA + G ++ F 
Sbjct: 62  DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV---GALSKGQLKEF- 117

Query: 263 LEQLETNVA 271
              L+ N+A
Sbjct: 118 ---LDANLA 123

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 29  SSPVVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
           S P+V    T     +++  A G+VLV+F+A WCG CQ L  I    A   K V T   +
Sbjct: 2   SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDV-TFIKV 60

Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
           D +++ + A  YG+   P +         +       +       + +IKA +++
Sbjct: 61  DVDKNGNAADAYGVSSIPALFFVKKEGNEIK-----TLDQFVGADVSRIKADIEK 110

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 72.8 bits (179), Expect = 5e-16
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216
           SD               + ++  L +V+FFA WCG C++L       A      V    V
Sbjct: 2   SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKV 60

Query: 217 DCDSEKSLMSKFNVQGFPTILVF 239
           D D   +    + V   P +   
Sbjct: 61  DVDKNGNAADAYGVSSIPALFFV 83

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
            S + + +LT       ++  N  ++++FYA WCG C+ + P   K       V      
Sbjct: 9   SSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDV-RFVKC 67

Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           D +E   +A+E  +   PT  +   G+      GA
Sbjct: 68  DVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGA 102

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 150 GSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG 209
           G      S      +L +      ++K  D  +++F+A WCG CK + P   K       
Sbjct: 2   GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP- 60

Query: 210 KVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
            V+    D D    +  +  V   PT ++ 
Sbjct: 61  DVRFVKCDVDESPDIAKECEVTAMPTFVLG 90

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 48  NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107
           + V +  F +P C HC A   + E+ A  +     V  ++  E+   A EYGI   PTI 
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 108 VFVPGK 113
           +    +
Sbjct: 62  INGDVE 67

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           I  F +P C HC       ++ AN +   V++ +++         ++ +   PTI++ G 
Sbjct: 6   IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65

Query: 242 DKDSPIPYEGARTAGAIESFALEQL 266
            +     + GA T  A+     ++L
Sbjct: 66  VE-----FIGAPTKEALVEAIKKRL 85

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           VV +        +++ + + +  F A WCG C+ +    EK A     V   A +DA+ +
Sbjct: 21  VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTV-KFAKVDADNN 79

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
             +  +  +   PT  +   GK      GA           Q+++ ++K+
Sbjct: 80  SEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGM-----LRQKLRDIIKD 124

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++ S      ++    L +  F A WCG CK +    +K A      VK   VD D+  
Sbjct: 22  VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS 80

Query: 223 SLMSKFNVQGFPTILVF 239
            ++SK  V   PT ++ 
Sbjct: 81  EIVSKCRVLQLPTFIIA 97

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 156 KSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGH 215
           +     + +  +   +    K     I+ F    C +C ++  E    +   +GK  + +
Sbjct: 4   EGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYY 63

Query: 216 VDCDSEKS--LMSKFNVQGFPTILVFGADKDSPIPYEGART----AGAIESFALEQ 265
              + EK+  L  K++    PT +    + +    ++G          + S  +++
Sbjct: 64  ARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE 119

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 78.3 bits (193), Expect = 7e-18
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 7/121 (5%)

Query: 24  ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           +L G      Q        +        ++ F    C +C  +       +   +G   +
Sbjct: 2   SLEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNI 61

Query: 84  AAL--DANEHQSLAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQQIKALLK 140
                +  ++  LA +Y     PT       G     +QG      I       + +L  
Sbjct: 62  YYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETI----LNSLGV 117

Query: 141 E 141
           +
Sbjct: 118 K 118

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 36  TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
           T        +    +VL+      CG C  +             V     +   + Q +A
Sbjct: 7   TIEELA-TYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYV-EKIEILLQDMQEIA 64

Query: 96  QEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
             Y +   PT+ +F  GK  +       ++ +    +Q  +
Sbjct: 65  GRYAVFTGPTVLLFYNGKEILRESRFISLENLERT-IQLFE 104

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
                    ++ + L ++      CG C  +  +      N    V+   +     + + 
Sbjct: 7   TIEELAT-YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIA 64

Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
            ++ V   PT+L+F   K      E  R +  I    LE+ 
Sbjct: 65  GRYAVFTGPTVLLFYNGK------EILRESRFISLENLERT 99

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 29  SSPVVQLTPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
              V ++  + F   V  A +  V+++ +  WCG C+A+ P +EK A     V  +    
Sbjct: 17  VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDC 76

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
             E+++LA+E GIR  PT K+        +  GA+
Sbjct: 77  NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 72.8 bits (179), Expect = 5e-16
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 163 IELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
            E+N   F  +V  + D   +++ F  WCG CK +AP+++K A      + L  +DC+ E
Sbjct: 21  TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLK-LDCNQE 79

Query: 222 -KSLMSKFNVQGFPTILVF 239
            K+L  +  ++  PT  + 
Sbjct: 80  NKTLAKELGIRVVPTFKIL 98

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 78.7 bits (194), Expect = 6e-18
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 27  GSSSPVVQLTPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-TVA 84
           GSS  +          ++  +     +VEF+A W   CQ+  PI+   +           
Sbjct: 4   GSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFG 63

Query: 85  ALDANEHQSLAQEYGI------RGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
            +D   +  ++  Y +      +  PT+ +F  GK  +             +
Sbjct: 64  KVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 115

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 155 SKSDSNESIELNSSNFDELVLKSKDL-WIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVK 212
           S   S      N    DE + + K + WIVEFFA W   C+  AP +   +       + 
Sbjct: 2   SSGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLN 61

Query: 213 LGHVDCDSEKSLMSKFNV------QGFPTILVF 239
            G VD      + +++ V      +  PT+++F
Sbjct: 62  FGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILF 94

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 77.7 bits (192), Expect = 7e-18
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 29  SSPVVQLTPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
              V ++  + F   V  A +  V+++ +  WCG  +A+ P +EK A     V  +    
Sbjct: 4   VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDC 63

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
             E+++LA+E GIR  PT K+        +  GA+
Sbjct: 64  NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 98

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 72.7 bits (179), Expect = 4e-16
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 163 IELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
            E+N   F  +V  + D   +++ F  WCG  K +AP+++K A      + L  +DC+ E
Sbjct: 8   TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLK-LDCNQE 66

Query: 222 -KSLMSKFNVQGFPTILVF 239
            K+L  +  ++  PT  + 
Sbjct: 67  NKTLAKELGIRVVPTFKIL 85

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 17/86 (19%), Positives = 31/86 (36%)

Query: 44  VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF 103
              A  V+++ F       C  L  I  K ++ L  +A +  +D ++     Q + I   
Sbjct: 19  KSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYI 78

Query: 104 PTIKVFVPGKPPVDYQGARDVKPIAE 129
           P+   F  G+      G+ D      
Sbjct: 79  PSTVFFFNGQHMKVDYGSPDHTKFVG 104

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           +    D+ +  + + + ++ F       C +L     K +++L     +  VD D     
Sbjct: 10  SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVY 69

Query: 225 MSKFNVQGFPTILVF 239
              F++   P+ + F
Sbjct: 70  TQYFDISYIPSTVFF 84

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 36  TPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
              +   ++  A+G +V+++F+A WCG C+ ++P   + +T       V  +D +E + +
Sbjct: 7   DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI 66

Query: 95  AQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           A EY I   PT      G    ++ GA
Sbjct: 67  AMEYNISSMPTFVFLKNGVKVEEFAGA 93

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           + ++ D  + K+   L +++FFA WCG CK ++P+  + +      V +  VD D  + +
Sbjct: 7   DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI 66

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
             ++N+   PT +            GA+  
Sbjct: 67  AMEYNISSMPTFVFLKNGVKVEEFAGANAK 96

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 74.6 bits (184), Expect = 6e-17
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 49  GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI-- 106
            V +  F +P C +C     + ++A         V  +D    +  A EYG+   P I  
Sbjct: 2   VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

Query: 107 --KVFVPGKPP 115
              V   G P 
Sbjct: 62  NGVVRFVGAPS 72

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           I  F +P C +C        +A      K+ +  +D   ++    ++ +   P I + G 
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGV 64

Query: 242 DKDSPIPYEGARTAGAIESFALEQLE 267
            +     + GA +   +     +++E
Sbjct: 65  VR-----FVGAPSREELFEAINDEME 85

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 29  SSPVVQLTPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           S  +      + +S +    N +V+V+F+A WCG C+ + P++++ +     +     +D
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVD 70

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
            ++ +  A++Y I   PT      G+   D  GA
Sbjct: 71  VDKLEETARKYNISAMPTFIAIKNGEKVGDVVGA 104

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
              + + L+ + K+ L +V+FFA WCG CK +AP +K+ +   K       VD D  +  
Sbjct: 20  QDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEET 77

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
             K+N+   PT +            GA   
Sbjct: 78  ARKYNISAMPTFIAIKNGEKVGDVVGASIA 107

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V Q    +     +  + +V+V+FYA WCG C+ + P+ EK +           LD +E 
Sbjct: 8   VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQA-DFYKLDVDEL 66

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
             +AQ+  +   PT+ +F  GK      GA
Sbjct: 67  GDVAQKNEVSAMPTLLLFKNGKEVAKVVGA 96

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
            +S FD   +    L +V+F+A WCG CK +AP  +K +     +     +D D    + 
Sbjct: 13  TASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 70

Query: 226 SKFNVQGFPTILVF 239
            K  V   PT+L+F
Sbjct: 71  QKNEVSAMPTLLLF 84

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 16/96 (16%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 31  PVVQLTPN---NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK-AATVLKGVATVAAL 86
           PV+++       + +     + ++++ F+  W   C+AL  ++E  +        +  ++
Sbjct: 1   PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60

Query: 87  DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
           DA+E+  +++ + I   P   +   G    +  GA 
Sbjct: 61  DADENSEISELFEISAVPYFIIIHKGTILKELSGAD 96

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 14/96 (14%)

Query: 163 IELNSS---NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-GKVKLGHVDC 218
           IE+N      +         L ++ F   W   CK L   ++  +N      V    +D 
Sbjct: 3   IEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDA 62

Query: 219 DSEKSLMSKFNVQGFPTILVF----------GADKD 244
           D    +   F +   P  ++           GAD  
Sbjct: 63  DENSEISELFEISAVPYFIIIHKGTILKELSGADPK 98

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 72.9 bits (179), Expect = 6e-16
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 159 SNESIELNSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPE---WKKAANNLKGKVK 212
             + I     +F E + +++    L  V+ F  WCG CK+L+         A+       
Sbjct: 5   QADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFV 64

Query: 213 LGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN 269
              +D +      L  K+ V  +PT+L   +  +      GA  A  +       +E+ 
Sbjct: 65  NLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 28  SSSPVVQLTPNNFKSKVLNA---NGVVLVEFYAPWCGHCQALTPI---WEKAATVLKGVA 81
           + +  +     +F   +  A   + ++ V+ +  WCG C+ L+ +       A       
Sbjct: 4   AQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHF 63

Query: 82  TVAALDA--NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQ-GARDVKPIAEFALQQIKA 137
               +D    E   L ++YG+  +PT+         V    GA D   + +     +++
Sbjct: 64  VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 76.3 bits (187), Expect = 6e-16
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL---KGKVKL 213
                 ++L+  +F++ V +     +V+F         +    +   + +       + +
Sbjct: 13  VTCTGCVDLDELSFEKTVERFPYS-VVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLI 69

Query: 214 GHVDCD-----SEKSLMSKFNVQ--GFPTILVF--GADKDSPIPYEGARTAGAIESF 261
             V          K+L  ++ V    FP+I +F   AD+   +P     T   +++F
Sbjct: 70  ATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAF 126

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 69.7 bits (170), Expect = 8e-14
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 20/126 (15%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG------VA 81
           + +  V L   +F+ K +      +V+F        +     +   +           +A
Sbjct: 14  TCTGCVDLDELSFE-KTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIA 70

Query: 82  TVAALDANEHQS--LAQEYGI--RGFPTIKVFVPG-KPPVDYQGARDVKPIAEFALQQIK 136
           TV   D  E ++  L   Y +  + FP+I +F       V      DV       L  +K
Sbjct: 71  TVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVT------LDNLK 124

Query: 137 ALLKER 142
           A +   
Sbjct: 125 AFVSAN 130

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 72.0 bits (177), Expect = 8e-16
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V  +T       +++ N +V+V+F+A WCG C+ + P +E+ +     +     +D +E 
Sbjct: 10  VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM-VFIKVDVDEV 68

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
             + ++  I   PT KV+  G       GA
Sbjct: 69  SEVTEKENITSMPTFKVYKNGSSVDTLLGA 98

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
           + + FD  ++   +L IV+FFA WCG CK++AP +++ +     K+    VD D    + 
Sbjct: 15  SQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVT 72

Query: 226 SKFNVQGFPTILVF----------GADKD 244
            K N+   PT  V+          GA+  
Sbjct: 73  EKENITSMPTFKVYKNGSSVDTLLGANDS 101

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 72.0 bits (177), Expect = 8e-16
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 36  TPNNFKSKVLNA---NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           +   + +++      +  ++V+F A WCG C+ + P++E  +    G      +D +   
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           ++A+  GI   PT  V+  G    D  GA
Sbjct: 69  AVAEAAGITAMPTFHVYKDGVKADDLVGA 97

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)

Query: 166 NSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           + + +D  + K K+     +V+F A WCG CK +AP ++  +N+  GKV    VD D+  
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68

Query: 223 SLMSKFNVQGFPTILVF----------GADKD 244
           ++     +   PT  V+          GA +D
Sbjct: 69  AVAEAAGITAMPTFHVYKDGVKADDLVGASQD 100

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 5/144 (3%)

Query: 28  SSSPVVQLT-PNNFKSKV-LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAA 85
           + + V ++     F+  + L A  +++V F+APW   C  +  +  + A  L  V +   
Sbjct: 10  AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQV-SFVK 68

Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSG 145
           L+A     ++++Y I   PT   F   +      GA    P     +Q+  +      S 
Sbjct: 69  LEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGA--HAPELTKKVQRHASSGSFLPSA 126

Query: 146 KATGGSSDKSKSDSNESIELNSSN 169
           K    +   S S    +  L   +
Sbjct: 127 KVKVDTDPNSSSVDKLAAALEHHH 150

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 166 NSSNFDELV-LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           ++  F+EL+ LK+K L +V F+APW   C ++     + A  L  +V    ++ +    +
Sbjct: 19  SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEV 77

Query: 225 MSKFNVQGFPTILVF----------GADKDS 245
             K+ +   PT L F          GA    
Sbjct: 78  SEKYEISSVPTFLFFKNSQKIDRLDGAHAPE 108

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 31  PVVQL-TPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
            V  + +  +F+ ++  A + + +V+F    CG C  + P +   +           +D 
Sbjct: 2   GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQA-VFLEVDV 60

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           ++ Q  A    I   PT + F        YQGA
Sbjct: 61  HQCQGTAATNNISATPTFQFFRNKVRIDQYQGA 93

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           +  +F   +  +   L +V+F    CG C ++AP +   +N    +     VD    +  
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGT 66

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
            +  N+   PT   F          GAD  
Sbjct: 67  AATNNISATPTFQFFRNKVRIDQYQGADAV 96

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 28  SSSPVVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAA 85
               V Q+       + L+A G  +V+V+F A WCG  + + P +   +     V     
Sbjct: 9   HHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNV-IFLE 67

Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           +D ++ Q +A E  ++  PT + F  G+   ++ GA
Sbjct: 68  VDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGA 103

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           + + F E +  + D L +V+F A WCG  K + P +   +      V    VD D  + +
Sbjct: 18  SKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDV 76

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
            S+  V+  PT   F          GA+K+
Sbjct: 77  ASECEVKSMPTFQFFKKGQKVGEFSGANKE 106

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 30  SPVVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
           S  ++L      ++V ++     ++++F A WC  C  +   ++          T+  +D
Sbjct: 20  SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN--YYYVTLVDID 77

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGK 113
            + H  L  ++ I+  PT + +    
Sbjct: 78  VDIHPKLNDQHNIKALPTFEFYFNLN 103

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 151 SSDKSKSDSNES---IELNS-SNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAAN 205
           SS +           IEL +  + +++   +++   +++F A WC  C K+   +K   N
Sbjct: 8   SSGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN 67

Query: 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
                V L  +D D    L  + N++  PT   +
Sbjct: 68  --YYYVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 36  TPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           T  + +  +      +++V+F+A WCG C+ + P  E  A  +  V   A +D ++++  
Sbjct: 6   TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEV-EFAKVDVDQNEEA 64

Query: 95  AQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           A +Y +   PT      GK    + GA
Sbjct: 65  AAKYSVTAMPTFVFIKDGKEVDRFSGA 91

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 66.1 bits (162), Expect = 7e-14
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
            +++ ++L+ ++K  L +V+FFA WCG C+ +AP+ +  A  +  +V+   VD D  +  
Sbjct: 6   TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEA 64

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
            +K++V   PT +            GA++ 
Sbjct: 65  AAKYSVTAMPTFVFIKDGKEVDRFSGANET 94

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 32  VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           V Q+       + L+A G  +V+V+F A WCG C+ + P +   +     V     +D +
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVD 60

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           + Q +A E  ++  PT + F  G+   ++ GA
Sbjct: 61  DCQDVASESEVKSMPTFQFFKKGQKVGEFSGA 92

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 63.8 bits (156), Expect = 5e-13
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           + + F E +  + D L +V+F A WCG CK + P +   +      V    VD D  + +
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDV 65

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
            S+  V+  PT   F          GA+K+
Sbjct: 66  ASESEVKSMPTFQFFKKGQKVGEFSGANKE 95

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 38/231 (16%)

Query: 162 SIELNSS-NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           S E+ +     E +    D+ I+  F    G       +++ AAN L+   K  H     
Sbjct: 8   SKEILTLKQVQEFLKDGDDVVILGVFQ---GVGDPGYLQYQDAANTLREDYKFHHT---F 61

Query: 221 EKSLMSKFNVQGFPTILVFGA--------DKDSPIPYEGARTAGAIESFALEQLETNVAP 272
              +     V     +++            +   +  +G+  A AI+ +    +  +  P
Sbjct: 62  STEIAKFLKVSL-GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDY----VVKHALP 116

Query: 273 --PEVTELTSQDVMEEKCGSAAICF-------------YLEMLLSVAEKFKRGHYSFVWA 317
                          ++                     +   +L VA+ F    Y+F  A
Sbjct: 117 LVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPE--YTFAIA 174

Query: 318 AAGKQPDLENRVGVGGYGYPALVALNVKKG-VYTPLKSAFELEHIVEFVKE 367
                      +G+   G     A+  + G  +      F+ + + EFV  
Sbjct: 175 DEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMA 225

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 36  TPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----- 89
           T +     ++ A G  V+++ YA WC  C+           V K +A    L AN     
Sbjct: 18  TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 77

Query: 90  -EHQSLAQEYGIRGFPTIKVFVP-GK--PPVDYQGARDVKPIAEFALQQIK 136
            +  +L +   + G PTI  F   G+  P     G  D +  +   L+  +
Sbjct: 78  AQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAH-LRDRQ 127

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 166 NSSNFDELVLKSKDLWI-VEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSE 221
                ++ ++++K   + ++ +A WC  CK+         +    L   V L   +  + 
Sbjct: 18  TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL-QANVTAN 76

Query: 222 ----KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAP 272
                +L+   NV G PTIL F         +  AR  G +++        +  P
Sbjct: 77  DAQDVALLKHLNVLGLPTILFFDGQGQ---EHPQARVTGFMDAETFSAHLRDRQP 128

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 27  GSSSPVVQL-TPNNFKSKVLNANG---VVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT 82
                V+   T   F + + N      +V+++F A WCG C+ + P++ + A    G   
Sbjct: 3   AEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA-I 61

Query: 83  VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
              +D +E + +A+ Y +   PT      G+      G 
Sbjct: 62  FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGG 100

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 166 NSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
               FD  +   KD   L I++F A WCG C+ +AP + + A    G + L  VD D  K
Sbjct: 13  TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVDELK 71

Query: 223 SLMSKFNVQGFPTILVF----------GADKD 244
            +   +NV+  PT L            G  KD
Sbjct: 72  DVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKD 103

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 38  NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE 97
                +   A  +V+++F A WCG C+ + P++   A           +D +E + +A++
Sbjct: 24  TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA-VFLKVDVDELKPIAEQ 82

Query: 98  YGIRGFPTIKVFVPGKPPVDYQGA 121
           + +   PT      G       GA
Sbjct: 83  FSVEAMPTFLFMKEGDVKDRVVGA 106

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 150 GSSDKSKSDSNESIELNS-SNFDELV---LKSKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205
            +S  + + + E I ++S   +   +     +K L +++F A WCG C+ +AP +   A 
Sbjct: 2   AASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61

Query: 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF----------GADKD 244
                V L  VD D  K +  +F+V+  PT L            GA K+
Sbjct: 62  KFPNAVFL-KVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKE 109

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 18  RFNLSDALYGSSSPVVQLTP----NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKA 73
             +    +      V+        N    K   +  +V+V+F A WCG C+ + P +   
Sbjct: 4   HHHHHLEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADL 63

Query: 74  ATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
           A  L  V     +D +E +S+A ++ I+  PT      GK      GA
Sbjct: 64  AKKLPNV-LFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA 110

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 166 NSSNFDEL---VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
               ++E      +SK L +V+F A WCG C+ +AP +   A  L   V    VD D  K
Sbjct: 23  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELK 81

Query: 223 SLMSKFNVQGFPTILVF----------GADKD 244
           S+ S + +Q  PT +            GA KD
Sbjct: 82  SVASDWAIQAMPTFMFLKEGKILDKVVGAKKD 113

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 23  DALYGSSSPVVQL-TPNNFKSKVLNA---NGVVLVEFYAPWCGHCQALTPIWEKAATVLK 78
           + +      V+     + F +++  A     VV+++F A WCG C+ + P++ + A    
Sbjct: 7   EGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP 66

Query: 79  GVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
           G      +D +E + +A++Y +   PT      G       GAR            ++  
Sbjct: 67  GA-VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARK---------DDLQNT 116

Query: 139 LKERLSGKATGGSS 152
           + + +   A   S+
Sbjct: 117 IVKHVGATAASASA 130

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 166 NSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           N   FD  + K+K+   + I++F A WCG C+ +AP + + A    G V L  VD D  K
Sbjct: 21  NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELK 79

Query: 223 SLMSKFNVQGFPTILVF----------GADKD 244
            +  K+NV+  PT L            GA KD
Sbjct: 80  EVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 111

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           V     +F+ K   +  +++V+F A WC  C+ + PI+ + A     V T   +D +E +
Sbjct: 12  VDTWKEHFE-KGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-TFLKVDVDELK 69

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVD 117
           ++A+E+ +   PT      GK  VD
Sbjct: 70  AVAEEWNVEAMPTFIFLKDGK-LVD 93

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
            +++    +F++    S+ L +V+F A WC  CK +AP + + A      V    VD D 
Sbjct: 10  HTVDTWKEHFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDE 67

Query: 221 EKSLMSKFNVQGFPTILVF----------GADKD 244
            K++  ++NV+  PT +            GADKD
Sbjct: 68  LKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKD 101

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 22  SDALYGSSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKG 79
           S   +G    + +++ N + ++V NA  +  V++  Y      C  +       A     
Sbjct: 5   SSGKFGE---LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE 61

Query: 80  VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL 139
                    N      + Y     PTI V+  G+    + G  +   I    L++++  L
Sbjct: 62  T-KFVKAIVNS---CIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGI-NLKLEELEWKL 116

Query: 140 KE 141
            E
Sbjct: 117 SE 118

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 151 SSDKSKSDSNESIELNSSNFDELVLK-SKDLW-IVEFFAPWCGHCKKLAPEWKKAANNLK 208
            S  S     E  E++ + +   V    KDLW ++  +      C  +       A    
Sbjct: 1   GSSGSSGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF- 59

Query: 209 GKVKLGHVDCDSEKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQL 266
            + K      +   S +  ++    PTI V+  G  +   I            +  LE+L
Sbjct: 60  PETKFVKAIVN---SCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGG----INLKLEEL 112

Query: 267 E 267
           E
Sbjct: 113 E 113

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 28  SSSPVVQL-TPNNFK---SKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           +   V  + T   +    S+      +VL  F A WCG  + + P + + +     +   
Sbjct: 22  AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSL-MF 80

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
             +D +E    +  + I+  PT      G+      GA
Sbjct: 81  LVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGA 118

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 166 NSSNFDELV---LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
               +D+ +    +   + +  F A WCG  +++AP + + + N    +    +D D   
Sbjct: 31  TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELS 89

Query: 223 SLMSKFNVQGFPTILVF----------GADKD 244
              + + ++  PT              GA+K 
Sbjct: 90  DFSASWEIKATPTFFFLRDGQQVDKLVGANKP 121

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           +G    + +++ N + ++V NA  +  V++  Y      C  +       A         
Sbjct: 2   FGE---LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETK-F 57

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
                N      Q Y     PTI V+  G+    + G  +   I    L++++  L E
Sbjct: 58  VKAIVNS---CIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGI-NLKLEELEWKLAE 111

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 163 IELNSSNFDELVLK-SKDLW-IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
            E++ + +   V    +D+W I+  +      C  +       A     + K      + 
Sbjct: 6   REISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVN- 63

Query: 221 EKSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQLE 267
             S +  ++    PTI V+  G  +   I            +  LE+LE
Sbjct: 64  --SCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGG----INLKLEELE 106

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 46/259 (17%)

Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           S+ L +    +  +  KD  IV FF        +   E+ KAA+NL+   +  H    + 
Sbjct: 8   SVPLRTEEEFKKFISDKDASIVGFFD---DSFSEAHSEFLKAASNLRDNYRFAHT---NV 61

Query: 222 KSLMSKFNVQGFPTILVFGA-------DKDSPIPYEGARTAGAIESFALEQLETNVAPPE 274
           +SL+++++  G   I++F         +  +    E   T+G I+ F  E +      P 
Sbjct: 62  ESLVNEYDDNG-EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGIC--PH 118

Query: 275 VTELTSQDVMEEKC-----------GSAAICFYLEMLLSVAEKFK--RGHYSFVWAAAGK 321
           +TE     +  +              +    ++   ++ VA+KF       +F  A+   
Sbjct: 119 MTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKT 178

Query: 322 QPDLENRVGVGGYGYPA-LVALNVKKGVYTPLKSAFEL--EHIVEFVKEAGRGGKGNLPL 378
                +  G+        +VA+   KG    ++  F    + +  F+++           
Sbjct: 179 FSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDY---------F 229

Query: 379 DGT-PSIVKTEP----WDG 392
           DG     +K+EP     DG
Sbjct: 230 DGNLKRYLKSEPIPESNDG 248

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 59.2 bits (143), Expect = 4e-11
 Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 5/107 (4%)

Query: 28  SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG----VATV 83
           +   +   T    +  +               C +C+             K     + + 
Sbjct: 10  NIKDLEVTTVVRAQEALDKKETATFF-IGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
                N+ Q+    YGI   P       G+  V    +   + I +F
Sbjct: 69  EPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDF 115

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 55.4 bits (133), Expect = 8e-10
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 12/116 (10%)

Query: 157 SDSNESIELNSSNFDEL-------VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG 209
           S++ E    N  + +          L  K+          C +C+K A          K 
Sbjct: 1   SNAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA 60

Query: 210 KVKLGHVDCDSE----KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
            +   + +  S+    ++  S++ +   P  +     + + +  + + +A  I+ F
Sbjct: 61  HIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQIN-VRCDSSMSAQEIKDF 115

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 57.8 bits (139), Expect = 8e-11
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 42  SKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR 101
           +  L   G  +  + A WC HCQ    ++  A   +  V                E GI 
Sbjct: 8   AAHLRQIGGTM--YGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGIT 65

Query: 102 GFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
            +PT    + G+    Y G R ++ +A  
Sbjct: 66  SYPTW--IINGR---TYTGVRSLEALAVA 89

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD------SEKSLMSKFNVQGFPT 235
              + A WC HC+     +  A + +       +V+C        +    ++  +  +PT
Sbjct: 16  GTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPT 69

Query: 236 ILVFGADKDSPIPYEGARTAGAIESFALEQLETN 269
            ++ G        Y G R+  A+   +   LE  
Sbjct: 70  WIINGRT------YTGVRSLEALAVASGYPLEEG 97

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 20  NLSDALYGSSSPVVQLTPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLK 78
            L + +   S     L     +  + +  G V +     P C +C     +    A    
Sbjct: 110 ALVEVIMRLSEDESGLEDATKE-ALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAW 168

Query: 79  GVA----TVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
                     A++A E+  +A +YG+   P+  + + G   + + G        +F L  
Sbjct: 169 KQGNPVILSEAVEAYENPDIADKYGVMSVPS--IAINGY--LVFVGV---PYEEDF-LDY 220

Query: 135 IKALLKERLSGKA 147
           +K+  + RL+ K 
Sbjct: 221 VKSAAEGRLTVKG 233

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 27/228 (11%), Positives = 58/228 (25%), Gaps = 35/228 (15%)

Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATV--LKGVATVAALDANEHQSLAQEYGIRGFPTIK 107
           V L +     C     L  ++E+ +       +  +             E+ +   PT+ 
Sbjct: 32  VFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVA 91

Query: 108 VFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS 167
                   V + G    + I       ++ +++                  S +   L  
Sbjct: 92  FLGGE---VRWTGIPAGEEIRAL----VEVIMRL-----------------SEDESGLED 127

Query: 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG----KVKLGHVDCDSEKS 223
           +  + L      + I     P C +C          A          +    V+      
Sbjct: 128 ATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD 187

Query: 224 LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
           +  K+ V   P+I + G        + G         +     E  + 
Sbjct: 188 IADKYGVMSVPSIAINGYLV-----FVGVPYEEDFLDYVKSAAEGRLT 230

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 182 IVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTI 236
           +V F +  C +C+++          +  L+ +  +  V  D+   + L  ++ V G PT 
Sbjct: 23  MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTF 82

Query: 237 LVFGADKDSPIPYEGARTAGAIE 259
           +       +    E  R  G+  
Sbjct: 83  VFL--VPKAGAWEEVGRLFGSRP 103

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 51  VLVEFYAPWCGHCQALTPIWEK-------AATVLKGVATVAALDAN--EHQSLAQEYGIR 101
           V+V F++  C +CQ +              + +L+    VA++  +  E Q LA+ Y + 
Sbjct: 22  VMVYFHSEHCPYCQQM----NTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVP 77

Query: 102 GFPTIKVFVPGKPPVDYQGARDV--KPIAEFA--LQQIKA 137
           G PT  VF+  K     +  R    +P AEF   L+Q+  
Sbjct: 78  GTPTF-VFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCV 116

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 9   ILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTP 68
             +         ++     ++            +  L   G  +  + A WC HCQ    
Sbjct: 160 AFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTM--YGAYWCPHCQDQKE 217

Query: 69  IWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA 128
           ++  A   +  V                E GI  +PT    + G+    Y G R ++ +A
Sbjct: 218 LFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWI--INGR---TYTGVRSLEALA 272

Query: 129 EFA 131
             +
Sbjct: 273 VAS 275

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 18/79 (22%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD------SEKSLMSKFNVQGFPT 235
              + A WC HC+     +  A +      ++ +V+C        +    ++  +  +PT
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFD------QVPYVECSPNGPGTPQAQECTEAGITSYPT 254

Query: 236 ILVFGADKDSPIPYEGART 254
            ++ G        Y G R+
Sbjct: 255 WIINGRT------YTGVRS 267

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRG--FPTIK 107
           ++V  +  WCG C+AL P + ++  + +       ++   E +   +++   G   P I 
Sbjct: 49  LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 108

Query: 108 VFVP-GKPPVDYQGARDVKPIAEFA--LQQIKALLKERLSGKATGGSSDKSKSD 158
              P GK   +            F    +Q+   +KE            K   D
Sbjct: 109 FLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAFRKKHLED 162

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-SLMSKFNVQG--FPTILV 238
           +V     WCG CK L P++ ++    +       V+ + E+      F+  G   P IL 
Sbjct: 50  MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109

Query: 239 FGAD 242
               
Sbjct: 110 LDPS 113

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 9/140 (6%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           YG    +   +   F   +        ++V  Y      C AL       A     V   
Sbjct: 111 YGFVYELE--SGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMV-KF 167

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKER- 142
             + A  +      +     PT+ V+  G+   ++    +     EF    +++ L E  
Sbjct: 168 CKIKA-SNTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLA-EEFFTGDVESFLNEYG 225

Query: 143 -LSGKATGGSSDKSKSDSNE 161
            L  K        +  +  E
Sbjct: 226 LLPEKEMHVLEQTNMEEDME 245

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 163 IELNS-SNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
            EL S   F E + K +     +V  +      C  L       A      VK   +   
Sbjct: 115 YELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKIKAS 173

Query: 220 SEKSLMSKFNVQGFPTILVF 239
                  +F+    PT+LV+
Sbjct: 174 -NTGAGDRFSSDVLPTLLVY 192

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 8/112 (7%)

Query: 38  NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-----VATVAALDANEHQ 92
               +     +   L+ F A WC  C+AL                  V  +   + + + 
Sbjct: 19  KKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNL 78

Query: 93  SLAQEYGI---RGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
            L+Q YG     G P + V              ++    + + Q I     +
Sbjct: 79  ELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAK 130

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 182 IVEFFAPWCGHCKKLA-----PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNV---QGF 233
           ++ F A WC  C+ L       +           VK+   + D    L   +      G 
Sbjct: 33  LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI 92

Query: 234 PTILVFGADK 243
           P ++V  +D 
Sbjct: 93  PAVVVVNSDG 102

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 144 SGKATGGSSDKSKSDSNESIELNSSNFDELVLKS----KDLWIVEFFAPWCGHCKKLA-- 197
           + +      +  ++    +  L   ++ E +  S    K + +    + WC  C K+   
Sbjct: 10  AARRRASGENLQQTRPIAAANLQWESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQ 69

Query: 198 ----PEWKKAAN--------NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244
                E+K  A         +   K           + L +++ V GFP ++   A+  
Sbjct: 70  ILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGK 128

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
            ++ +  D+ +  S  + ++ F            LA    +  N   G++    V  ++E
Sbjct: 19  LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAE 78

Query: 222 KSLMSKFNVQGFPTILVF 239
           + LM++F V   P++ V 
Sbjct: 79  RGLMARFGVAVCPSLAVV 96

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 35  LTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           +        + ++  +V++ F            L  +  +      G    A + A   +
Sbjct: 20  VDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAER 79

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGARD 123
            L   +G+   P++ V  P +        +D
Sbjct: 80  GLMARFGVAVCPSLAVVQPERTLGVIAKIQD 110

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 31/153 (20%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFF--------APWCGHCKKLAPEWKKAANNLK 208
            D    I + + N+  L       + + +            C  C      +   A+ ++
Sbjct: 15  KDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIR 74

Query: 209 -----GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP---------------IP 248
                       VD +    L+    +Q  P ++V+   + +                + 
Sbjct: 75  SQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLV 134

Query: 249 YEGARTAGAIESFALEQLETNVA---PPEVTEL 278
            E A        F  + L  ++       V E 
Sbjct: 135 PENAENTLQFGDFLAKILNISITVPQAFNVQEE 167

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 11/65 (16%), Positives = 22/65 (33%)

Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
           +V + F   +   C  +  +  K A  +K    +  +D  E       Y +    ++  F
Sbjct: 43  LVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102

Query: 110 VPGKP 114
              K 
Sbjct: 103 YRNKH 107

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           +    D+ ++   + L  + F   +   C K+     K A+++K    +  VD       
Sbjct: 28  SGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF 87

Query: 225 MSKFNVQGFPTILVF 239
            + + +    +++ F
Sbjct: 88  NTMYELYDPVSVMFF 102

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 43/139 (30%)

Query: 34  QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTP------------------------- 68
                + ++K        ++ F+   CGHCQ  TP                         
Sbjct: 23  YRYLYDVQAKY------TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKD 76

Query: 69  -IWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG---ARDV 124
             W K     K    +   D+  H      Y I   P +  +V     +D      A+ +
Sbjct: 77  EEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVL--YV-----LDKNKVIIAKRI 129

Query: 125 KPIA-EFALQQIKALLKER 142
                +  L Q +  LK +
Sbjct: 130 GYENLDDFLVQYEKSLKTK 148

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKF 228
           I+ F+   CGHC++  P+        + K +++   + + +     KF
Sbjct: 35  ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKF 82

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 50/137 (36%)

Query: 39  NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL-----KGVATVA--------- 84
             K++        ++ FY P C +C+    ++ +    +       +  +A         
Sbjct: 24  RLKAQY------TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREE 77

Query: 85  --------------ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG---ARDVKPI 127
                           +        Q Y IR  PTI  ++     +D +     +D    
Sbjct: 78  WATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTI--YL-----LDGRKRVILKDTS-- 128

Query: 128 AEFALQQIKALLKERLS 144
               ++Q+   L  +  
Sbjct: 129 ----MEQLIDYLATQAG 141

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 50/134 (37%)

Query: 39  NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL-----KGVATVA--------- 84
            F ++        L+    P C  C  +    + +  +      K +  ++         
Sbjct: 28  QFPAEY------TLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDE 81

Query: 85  --------------ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG---ARDVKPI 127
                           D          Y +R  PT+  ++     +D       +D    
Sbjct: 82  WKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTL--YL-----LDKNKTVLLKDAT-- 132

Query: 128 AEFALQQIKALLKE 141
               LQ+++  L E
Sbjct: 133 ----LQKVEQYLAE 142

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           YG    +   T   F   +        ++V  Y      C AL    E  A     V   
Sbjct: 98  YGFVYELE--TGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMV-KF 154

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
             + A+        +     PT+ V+  G+   ++    +     +F    +++ L E
Sbjct: 155 CKIRASNT-GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAE-DFFAADVESFLNE 210

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 38  NNFKSKVLNANGVVLVEFYAPWCGHCQA----LTPIWEKAATVLKGVATVAALDANEHQS 93
           ++  S   +   + L+ F  P C +C      + P +               +       
Sbjct: 8   HHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPG 67

Query: 94  LAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGK 146
           L     +   PT  +          +G        +F    +  L+ +   G+
Sbjct: 68  LELARPVTFTPTFVLMAGDVESGRLEGYPG----EDFFWPMLARLIGQAEPGQ 116

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKK----LAPEWKKAANNLKGKVK 212
             S+      S + D       +L ++ F  P C +C +    +AP++          V+
Sbjct: 2   RGSHHHHHHGSDDDD-----KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQ 56

Query: 213 LGHVDCDSEKSLMSKFNVQGFPTILVFGADK 243
              +       L     V   PT ++   D 
Sbjct: 57  RLQMRDPLPPGLELARPVTFTPTFVLMAGDV 87

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
           E+    + + +  S  + +   FA      K+L+ + K  A   +G +  G +D  +  +
Sbjct: 10  EIGPETYSDYM--SAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGA 67

Query: 224 LMSKFNV--QGFPTILVFGADKDS--PIPYEGARTAGAIESFALEQLETNVAPPEVTELT 279
                N+    FP   +    K+   P   E   T  AI++F  + +   + P     + 
Sbjct: 68  HAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEP----SIK 123

Query: 280 SQDVMEE 286
           S+ + E+
Sbjct: 124 SEPIPEK 130

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 25/135 (18%)

Query: 273 PEVTELTSQDVMEEKCGSAAICF--------YLEMLLSVAEKFKRGHYSFVWAAAGKQPD 324
            E+   T  D M      A I            + L  +AE  + G  +F    A     
Sbjct: 9   GEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQR-GVINFGTIDAKAFGA 67

Query: 325 LENRVGVGGYGYPALVALNVKKGVYTPL--KSAFELEHIVEFVKEAGRGGKGNLPLDGT- 381
               + +    +PA     V K    P   +     E I  FV +          + G  
Sbjct: 68  HAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDF---------VAGKI 118

Query: 382 PSIVKTEP----WDG 392
              +K+EP     +G
Sbjct: 119 EPSIKSEPIPEKQEG 133

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 21/79 (26%), Gaps = 25/79 (31%)

Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA-----------------------AL 86
             ++ F+ PWC  C A  P   + A     V  V                          
Sbjct: 26  PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLN 85

Query: 87  DANEHQSLAQEYGIRGFPT 105
           DA+    +   Y +   P 
Sbjct: 86  DAD--GVIWARYNVPWQPA 102

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 21/82 (25%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG---------------------HVDCDS 220
           ++ F+ PWC  C   AP   + A        +G                         D+
Sbjct: 28  VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA 87

Query: 221 EKSLMSKFNVQGFPTILVFGAD 242
           +  + +++NV   P  + + AD
Sbjct: 88  DGVIWARYNVPWQPAFVFYRAD 109

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 22/84 (26%)

Query: 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG----------------------HVDC 218
            ++ F+APWC  C+  AP   + A +      +G                          
Sbjct: 28  AVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA 87

Query: 219 DSEKSLMSKFNVQGFPTILVFGAD 242
           D++ S+ + F V   P        
Sbjct: 88  DTDGSVWANFGVTQQPAYAFVDPH 111

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 18/98 (18%)

Query: 164 ELNSSNFDEL---VLKSKDLWIVEFFA--------PWCGHCKKLAPEWKKAANNLKGKVK 212
           E++ S F+E    V +     I  +F          WC  C +  P  ++   ++     
Sbjct: 6   EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 65

Query: 213 LGHVDCDSEKSLM-------SKFNVQGFPTILVFGADK 243
             +     +               V   PT+L +G  +
Sbjct: 66  FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQ 103

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKF---NVQGFPTIL 237
           ++ F+A +    +    +     N      + +  +  D ++S+ ++    +     T  
Sbjct: 36  LLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQF 95

Query: 238 VFGADKDSPI 247
             G  K+S +
Sbjct: 96  HEGLGKESEL 105

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 40  FKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG 99
            + + +     +LV     WC  CQ      + A  +   +  +A +     +   ++  
Sbjct: 47  ERLQRIERRYRLLV-AGEMWCPDCQINLAALDFAQRLQPNI-ELAIISKGRAEDDLRQRL 104

Query: 100 IRGFPTIKVFV 110
                 I + +
Sbjct: 105 ALERIAIPLVL 115

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 39/104 (37%)

Query: 40  FKSKVLNANG-----------VVLVEFYAPWCGHCQALTPI------------------- 69
           + + VL                V   F A WC   +A TP                    
Sbjct: 9   YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68

Query: 70  --------WEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105
                   ++     +  +A     D    + L   + ++  PT
Sbjct: 69  SWDESAEDFKDYYAKMPWLALP-FEDRKGMEFLTTGFDVKSIPT 111

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 51  VLVEFYAPWCGHCQALTP-IW--EKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPT 105
           +++         CQ L   +W  E    +++   +      D+ E Q   Q Y +  FP 
Sbjct: 45  LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 104

Query: 106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSN 160
           + +       +D +  + +    +  +      +   L           S   S+
Sbjct: 105 VSI-------LDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPSS 152

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 147 ATGGSSDKSKSDSN------ESIELNSS-NFDELVLKSK--DLWI-VEFFAPWCGHCKKL 196
            + GSS   K  +         I+L    +F+      +  + W+ +         C+ L
Sbjct: 1   GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL 60

Query: 197 APE-WKKAA--NNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVF 239
             + W   A  N ++       V  DSE  +  +  + +  FP + + 
Sbjct: 61  NRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSIL 108

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 36/121 (29%)

Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVA-ALDANEHQ-------------- 92
           VVL++F         A      +       +G      +LD +EH               
Sbjct: 37  VVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVR 96

Query: 93  -------SLAQEYGIRGFPTIKVFVPGKPPVDYQG---ARDVKPIAEFALQQIKALLKER 142
                  S    Y +   P++  F+     V+      AR      +   + IK LL+  
Sbjct: 97  DANGAYSSYISLYNVTNLPSV--FL-----VNRNNELSARGEN--IKDLDEAIKKLLEGH 147

Query: 143 L 143
            
Sbjct: 148 H 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.97
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.97
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.97
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.96
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.96
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.95
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.93
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.92
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.92
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.91
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.91
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.89
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.89
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.88
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.87
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.87
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.86
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.85
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.84
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.84
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.83
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.83
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.82
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.81
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.81
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.81
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.81
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.81
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.81
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.8
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.8
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.8
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.8
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.79
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.79
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.79
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.79
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.79
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.79
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.78
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.78
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.78
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.78
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.78
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.78
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.78
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.78
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.78
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.77
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.77
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.77
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.77
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.77
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.76
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.76
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.76
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.75
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.75
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.75
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.75
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.75
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.75
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.75
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.75
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.74
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.74
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.74
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.74
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.74
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.74
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.74
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.74
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.74
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.73
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.73
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.73
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.73
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.73
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.73
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.72
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.72
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.72
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.72
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.72
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.71
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.71
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.71
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.71
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.71
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.7
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.7
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.7
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.7
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.7
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.69
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.69
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.69
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.69
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.69
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.69
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.69
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.69
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.69
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.69
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.52
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.69
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.68
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.68
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.68
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.68
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.68
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.68
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.68
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.68
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.68
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.68
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.67
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.67
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.67
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.67
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.67
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.67
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.67
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.67
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.66
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.66
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.66
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.66
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.66
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.65
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.65
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.65
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.65
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.64
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.64
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.64
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.64
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.63
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.62
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.62
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.62
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.62
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.62
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.62
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.61
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.61
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.61
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.61
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.61
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.6
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.6
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.6
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.6
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.6
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.6
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.59
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.59
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.59
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.59
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.59
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.59
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.59
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.59
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.58
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.58
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.58
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.58
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.57
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.57
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.57
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.56
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.56
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.56
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.56
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.55
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.54
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.54
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.54
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.54
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.54
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.53
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.53
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.53
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.29
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.52
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.52
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.52
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.52
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.52
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.27
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.52
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.51
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.5
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.49
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.49
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.49
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.49
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.48
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.48
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.47
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.47
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.47
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.47
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.45
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.44
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.44
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.43
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.43
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.43
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.43
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.43
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.43
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.41
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.4
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.4
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.4
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.4
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.4
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.39
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.38
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.38
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.38
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.36
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.36
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.36
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.36
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.36
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.34
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.34
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.33
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.32
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.32
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.32
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.31
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.31
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.3
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.3
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.28
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.94
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.27
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.27
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.27
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.26
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.25
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.24
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.24
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.24
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.23
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.23
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.23
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.22
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.22
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.21
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.2
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.19
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.19
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.19
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.19
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.18
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.18
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.18
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.18
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.17
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.17
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.16
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.15
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.15
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.14
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.14
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.14
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.13
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.12
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.1
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.1
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.09
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.08
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.08
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.08
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.07
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.07
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.06
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.06
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.06
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.06
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.05
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.05
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.04
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.03
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.02
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.01
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.01
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.56
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.56
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.99
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.99
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.98
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.98
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.98
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.96
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.95
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.94
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.94
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.94
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.94
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.93
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.93
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.92
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.91
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.91
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.91
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.91
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.91
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.89
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.88
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.88
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.88
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.87
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.87
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.87
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.87
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.86
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.86
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.85
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.84
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.84
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.83
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.82
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.82
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.81
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.81
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.8
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.79
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.79
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.78
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.78
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.78
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.76
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.75
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.73
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.72
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.7
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.7
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.69
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.68
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.68
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.67
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.66
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.65
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.65
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.65
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.65
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.61
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.59
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.58
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.58
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.57
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.57
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.55
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.55
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.54
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.54
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.53
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.52
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.51
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.91
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.9
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.48
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.48
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.47
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.47
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.46
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.46
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.46
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.45
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.44
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.42
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.41
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.4
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.4
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.39
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.39
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.39
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.34
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.34
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.3
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.29
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.29
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.28
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.28
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.26
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.26
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.26
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.25
3me7_A	170	Putative uncharacterized protein; electron transfe	98.24
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.24
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.23
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.22
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.22
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.19
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.19
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.18
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.18
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.18
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.17
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.16
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.16
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.15
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.14
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.14
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.13
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.13
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.11
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.08
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.07
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.07
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.06
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.05
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.05
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.04
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.03
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.03
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.02
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.01
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.01
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.0
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.0
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.98
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.97
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.97
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.97
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.96
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.96
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	97.94
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.93
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.92
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.92
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.91
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.91
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.9
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.88
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.87
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.87
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.84
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.84
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.81
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.81
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.81
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.78
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.77
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.75
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.73
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.71
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.7
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.7
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.69
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.69
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.68
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.68
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.65
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	97.64
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	97.63
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.63
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.61
3me7_A	170	Putative uncharacterized protein; electron transfe	97.59
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.58
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	97.57
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.57
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.56
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.54
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.52
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.51
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.48
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.45
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.45
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.45
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.45
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.43
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	97.4
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.39
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.39
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.39
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.38
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.36
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.34
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	97.34
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.31
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.29

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=3e-41  Score=316.98  Aligned_cols=313  Identities=17%  Similarity=0.287  Sum_probs=261.2

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhh------HHHHHHHHHhCC-CeEEEEEeccccHhHHHh
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALT------PIWEKAATVLKG-VATVAALDANEHQSLAQE   97 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~------~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~   97 (411)
                      .+...+.+.+|+.++|+ .++.++++++|.||||||++|+...      |.|++++..+++ .+.+++|||++++++|++
T Consensus         8 ~~~~~~~v~~lt~~~f~-~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~   86 (367)
T 3us3_A            8 EYDGVDRVINVNAKNYK-NVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK   86 (367)
T ss_dssp             CCCCCCCCEECCTTTHH-HHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHH
T ss_pred             CCCCCCccEECCHHHHH-HHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHH
Confidence            45567789999999999 5567789999999999999974333      689999999987 599999999999999999


Q ss_pred             cCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc-cchHHHHhc
Q 015217           98 YGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNFDELVLK  176 (411)
Q Consensus        98 ~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~  176 (411)
                      |+|+++||+++|++|+. ..|.|.++.+.|.+|+.+.+                       .+.+..+++ .++.+++..
T Consensus        87 ~~V~~~PTl~~f~~G~~-~~y~G~~~~~~i~~~i~~~~-----------------------~~~v~~i~~~~~~~~~~~~  142 (367)
T 3us3_A           87 LGLTEEDSIYVFKEDEV-IEYDGEFSADTLVEFLLDVL-----------------------EDPVELIEGERELQAFENI  142 (367)
T ss_dssp             HTCCSTTEEEEEETTEE-EECCSCCSHHHHHHHHHHHH-----------------------SCSEEECCSHHHHHHHHHC
T ss_pred             cCCCcCceEEEEECCcE-EEeCCCCCHHHHHHHHHHhc-----------------------CCCcEEcCCHHHHHHHhcc
Confidence            99999999999998864 69999999999999999875                       467888865 677776532


Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCH
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTA  255 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~  255 (411)
                      .+++++|.|++++|   ....+.|.++|..+++.+.|+.++   +..++++|+++. |+|++|+...+.+..|.|. .+.
T Consensus       143 ~~~~~vv~ff~~~~---~~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~~  215 (367)
T 3us3_A          143 EDEIKLIGYFKNKD---SEHYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPNSE  215 (367)
T ss_dssp             CSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHTCCT-TCEEEECTTCSSCEECSSSSCCH
T ss_pred             CCCcEEEEEECCCC---chHHHHHHHHHHhhcCCcEEEEEC---CHHHHHHcCCCC-CeEEEEcCCCCCCeecCCCCCCH
Confidence            56789999999886   577899999999999999999875   578999999995 9999998866668999995 899


Q ss_pred             HHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC--Ccc--EEE----------eHHHHHHHHHHhhcC-ccEEEEecCC
Q 015217          256 GAIESFALEQLETNVAPPEVTELTSQDVMEEKCG--SAA--ICF----------YLEMLLSVAEKFKRG-HYSFVWAAAG  320 (411)
Q Consensus       256 ~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~~--~~~----------~~~~~~~~a~~~~~~-~~~f~~i~~~  320 (411)
                      ++|.+|+..+.     .|.+.+++.++....+..  ...  ++|          +.+.++.+|++|+++ .+.|+|+|..
T Consensus       216 ~~l~~fi~~~~-----~p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~  290 (367)
T 3us3_A          216 EEIVNFVEEHR-----RSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPD  290 (367)
T ss_dssp             HHHHHHHHHTC-----SCSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGG
T ss_pred             HHHHHHHHHcC-----ccceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCc
Confidence            99999999885     499999999887666553  222  233          457899999999984 4999999998


Q ss_pred             CchhhH----HHhCCCCCCCCeEEEeecCCC--ccccCCC---CCChhHHHHHHHHHccCCCCC
Q 015217          321 KQPDLE----NRVGVGGYGYPALVALNVKKG--VYTPLKS---AFELEHIVEFVKEAGRGGKGN  375 (411)
Q Consensus       321 ~~~~~~----~~f~~~~~~~P~l~v~~~~~~--~~~~~~~---~~~~~~i~~fi~~~~~g~~~~  375 (411)
                      .++..+    +.||+. .++|++++++..++  ++..+++   .+|.++|.+|+++++.|+.++
T Consensus       291 ~~~~~l~~~~~~fgl~-~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~p  353 (367)
T 3us3_A          291 DFPLLVPYWEKTFDID-LSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINT  353 (367)
T ss_dssp             GCTTTHHHHHHHHTCC-TTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSCC
T ss_pred             cchhHHHHHHHhcCCC-CCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcCc
Confidence            777654    469998 47999999997765  3444554   699999999999999996653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=4.9e-40  Score=307.57  Aligned_cols=310  Identities=19%  Similarity=0.280  Sum_probs=259.9

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHH-------HHHHHHHhCC-CeEEEEEeccccHhHHH
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI-------WEKAATVLKG-VATVAALDANEHQSLAQ   96 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-------~~~~~~~~~~-~i~~~~vd~~~~~~~~~   96 (411)
                      .+...+.+.+|++++|+ .++.++++++|.|||+||+ |+.+.|.       |+++++.+++ .+.++.|||++++++|+
T Consensus         6 ~~~~~~~v~~l~~~~f~-~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~   83 (350)
T 1sji_A            6 TYDGKDRVVSLTEKNFK-QVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAK   83 (350)
T ss_dssp             CCCCCCCCEEECHHHHH-HHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHH
T ss_pred             CCCCCCccEECCHHHHH-HHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHH
Confidence            34556779999999999 5667789999999999999 9999998       9999999987 59999999999999999


Q ss_pred             hcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeC-ccchHHHHh
Q 015217           97 EYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELN-SSNFDELVL  175 (411)
Q Consensus        97 ~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~  175 (411)
                      +|+|+++||+++|++|+ ..+|.|.++.+.|.+|+.+.+                       .+.+..++ .+++.+++.
T Consensus        84 ~~~v~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~-----------------------~~~~~~l~~~~~~~~~~~  139 (350)
T 1sji_A           84 KLGFDEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLI-----------------------EDPVEIINSKLEVQAFER  139 (350)
T ss_dssp             HHTCCSTTEEEEEETTE-EEEECSCCCHHHHHHHHHTTS-----------------------SCSEEECCSHHHHHHHHH
T ss_pred             hcCCCccceEEEEECCc-EEEecCCCCHHHHHHHHHHhc-----------------------CCcceeccchHHHHHHhc
Confidence            99999999999999887 689999999999999998663                       56688886 466777643


Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CC
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RT  254 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~  254 (411)
                      ..++.++|.|++++|   ....+.|.++|..+++++.|+.++   ++.+++++++. .|++++|+..++.+..|.|. .+
T Consensus       140 ~~~~~~vv~ff~~~~---~~~~~~~~~~A~~~~~~~~f~~~~---~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~  212 (350)
T 1sji_A          140 IEDQIKLIGFFKSEE---SEYYKAFEEAAEHFQPYIKFFATF---DKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYT  212 (350)
T ss_dssp             CCSSCEEEEECSCTT---SHHHHHHHHHHHHTTTTSEEEEEC---CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCC
T ss_pred             cCCCcEEEEEECCCC---cHHHHHHHHHHHhhccCcEEEEEC---CHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCC
Confidence            155678999999886   556789999999999999999875   67899999999 89999998766668899997 89


Q ss_pred             HHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCc-c---EEE----------eHHHHHHHHHHhhc-CccEEEEecC
Q 015217          255 AGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSA-A---ICF----------YLEMLLSVAEKFKR-GHYSFVWAAA  319 (411)
Q Consensus       255 ~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-~---~~~----------~~~~~~~~a~~~~~-~~~~f~~i~~  319 (411)
                      .++|.+|+..+.     .|.+.+++..+.......+. .   ++|          +.+.++.+|++|++ ..+.|+|+|+
T Consensus       213 ~~~l~~fi~~~~-----~p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~  287 (350)
T 1sji_A          213 EEELVEFVKEHQ-----RPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDP  287 (350)
T ss_dssp             HHHHHHHHHHHC-----CCSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECG
T ss_pred             HHHHHHHHHHcC-----ccchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence            999999999885     48999999987765444322 2   223          35789999999996 3499999999


Q ss_pred             CCchhhH----HHhCCCCCCCCeEEEeecCCC-cccc-CC---CCCChhHHHHHHHHHccCCC
Q 015217          320 GKQPDLE----NRVGVGGYGYPALVALNVKKG-VYTP-LK---SAFELEHIVEFVKEAGRGGK  373 (411)
Q Consensus       320 ~~~~~~~----~~f~~~~~~~P~l~v~~~~~~-~~~~-~~---~~~~~~~i~~fi~~~~~g~~  373 (411)
                      ..++.++    +.||++ ...|++++++..++ +|.. ++   +.++.++|.+|++++++|+.
T Consensus       288 ~~~~~~~~~~~~~~gi~-~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl  349 (350)
T 1sji_A          288 DDFPLLVAYWEKTFKID-LFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI  349 (350)
T ss_dssp             GGCHHHHHHHHHHCCSC-TTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHTSCC
T ss_pred             hhhHHHHHHHHhhcCCC-ccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhcCcc
Confidence            8888877    889998 36899999997554 5643 43   47999999999999999976

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=300.55  Aligned_cols=314  Identities=22%  Similarity=0.297  Sum_probs=235.0

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHh------CCCeEEEEEeccccHhHHHhcCCCcc
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL------KGVATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~------~~~i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      +.+.+|++++|+ .++.++++++|+||++||++|+++.|.|+++++.+      .+++.++.|||+++.++|++|+|+++
T Consensus         5 ~~v~~l~~~~f~-~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            5 SEITSLDTENID-EILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ---CBCCTTTHH-HHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CceEECCHHHHH-HHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            457899999999 56677899999999999999999999999999998      34699999999999999999999999


Q ss_pred             cEEEEEeCCCCCc-ccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc-cchHHHHhcCCCeE
Q 015217          104 PTIKVFVPGKPPV-DYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNFDELVLKSKDLW  181 (411)
Q Consensus       104 P~~~~~~~g~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~  181 (411)
                      |++++|++|+.+. .|.|.++.+.|.+|+.+.+                       .+.+..+++ .++.. + ..+..+
T Consensus        84 Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~-----------------------~~~v~~l~~~~~l~~-l-~~~~~~  138 (382)
T 2r2j_A           84 PTLKLFRNGMMMKREYRGQRSVKALADYIRQQK-----------------------SDPIQEIRDLAEITT-L-DRSKRN  138 (382)
T ss_dssp             SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHH-----------------------SCCCEEC--------------CCE
T ss_pred             CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhc-----------------------cCCceecCCHHHHHH-h-cCCCCE
Confidence            9999999987655 5999999999999999886                       355677754 45655 3 556678


Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCC-CCCcccccCCC-CHHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-KDSPIPYEGAR-TAGAIE  259 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~-~~~~~~y~g~~-~~~~i~  259 (411)
                      +|.|+++++.   ...+.|.++|..+++++.|+...+    .+++++++.+.| ++++..+ ......|.|.+ +.++|.
T Consensus       139 ~v~ff~~~~~---~~~~~f~~~A~~~~~~~~F~~~~~----~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~  210 (382)
T 2r2j_A          139 IIGYFEQKDS---DNYRVFERVANILHDDCAFLSAFG----DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTY  210 (382)
T ss_dssp             EEEEESCSSS---HHHHHHHHHHHHHTTTCEEEEEES----CC--------CE-EEEECSSSSSCCEECCSCTTCHHHHH
T ss_pred             EEEEECCCCC---hhHHHHHHHHHHhhccceEEEEeh----hhHHhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHH
Confidence            8889888764   457789999999999999988775    367889999889 5444432 23468899998 899999


Q ss_pred             HHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE-------------eHHHHHHHHHHhhcCccEEEEecCCCchhhH
Q 015217          260 SFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLE  326 (411)
Q Consensus       260 ~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~  326 (411)
                      +|+..+..     |.+.+++..+....++.+.++++             +.+.+.++|.+++++ +.|+|+|+..+..++
T Consensus       211 ~fi~~~~~-----p~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~-i~f~~id~~~~~~~~  284 (382)
T 2r2j_A          211 NWIQDKCV-----PLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGT-INFLHADCDKFRHPL  284 (382)
T ss_dssp             HHHHHHHS-----CSSEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTT-SEEEEEETTTTHHHH
T ss_pred             HHHHhccc-----CceEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCe-eEEEEEchHHhHHHH
Confidence            99999874     88999999887777777766554             223445556677765 999999999999999


Q ss_pred             HHhCCCCCCCCeEEEeecCCCcc--ccCCCCCChhHHHHHHHHHccCCCCCCC-CCCCCcc
Q 015217          327 NRVGVGGYGYPALVALNVKKGVY--TPLKSAFELEHIVEFVKEAGRGGKGNLP-LDGTPSI  384 (411)
Q Consensus       327 ~~f~~~~~~~P~l~v~~~~~~~~--~~~~~~~~~~~i~~fi~~~~~g~~~~~~-~~~~p~~  384 (411)
                      ..||++..++|++++++.. ..|  ..+++.++.++|.+|+++++.|+++..- .+.+|.-
T Consensus       285 ~~~gl~~~~~P~i~i~~~~-~~y~~~~~~~~~~~~~i~~F~~d~~~Gkl~p~~kse~~P~~  344 (382)
T 2r2j_A          285 LHIQKTPADCPVIAIDSFR-HMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTD  344 (382)
T ss_dssp             HHTTCCGGGCSEEEEECSS-CEEECCCSGGGGSTTHHHHHHHHHHHTTTSSCC--------
T ss_pred             HHcCCCccCCCEEEEEcch-hcCCCCccccccCHHHHHHHHHHHHCCCccccccCCCCCCC
Confidence            9999987779999998753 334  2234567889999999999999996652 2226643

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=3.9e-37  Score=300.63  Aligned_cols=309  Identities=27%  Similarity=0.476  Sum_probs=260.3

Q ss_pred             CcEEeCccchhHHHhcCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           31 PVVQLTPNNFKSKVLNAN---GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .+.+|++++|++ .+.++   ++++|+||++||++|+++.|.|+++++.+++.+.++.|||++++++|++|||.++|+++
T Consensus         2 ~v~~l~~~~f~~-~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~   80 (481)
T 3f8u_A            2 DVLELTDDNFES-RISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLK   80 (481)
T ss_dssp             CCEEECTTTHHH-HTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred             ceEEecHHHHHH-HHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            578999999994 55666   89999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc-cchHHHHhcCCCeEEEEEe
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNFDELVLKSKDLWIVEFF  186 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~lv~f~  186 (411)
                      +|++|+.+.+|.|.++.+.|.+|+.+.+                       .+.+..+++ +++.+ +.+.+..++|.|+
T Consensus        81 ~~~~g~~~~~~~G~~~~~~l~~~~~~~~-----------------------~~~~~~i~~~~~~~~-~~~~~~~~vv~~~  136 (481)
T 3f8u_A           81 IFRDGEEAGAYDGPRTADGIVSHLKKQA-----------------------GPASVPLRTEEEFKK-FISDKDASIVGFF  136 (481)
T ss_dssp             EEETTEEEEECCSCSSHHHHHHHHHHHT-----------------------SCSEEEECSHHHHHH-HTTSSSCEEEEEE
T ss_pred             EEeCCceeeeecCccCHHHHHHHHHhhc-----------------------ccCceecCCHHHHHH-HHhcCCcEEEEEE
Confidence            9999977889999999999999999874                       567888854 55555 4566778888899


Q ss_pred             CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc------CCCCCccccc-CCCCHHHHH
Q 015217          187 APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG------ADKDSPIPYE-GARTAGAIE  259 (411)
Q Consensus       187 ~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~------~~~~~~~~y~-g~~~~~~i~  259 (411)
                      .++|   ......|.++|..+++++.|+.++   +..++++|++...| +++|+      ...+....|. |..+.+.|.
T Consensus       137 ~~~~---~~~~~~f~~~a~~~~~~~~F~~~~---~~~~~~~~~v~~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~  209 (481)
T 3f8u_A          137 DDSF---SEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNGEG-IILFRPSHLTNKFEDKTVAYTEQKMTSGKIK  209 (481)
T ss_dssp             SCTT---CHHHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCSSSEE-EEEECCGGGCBTTBCSEEECCCSSCCHHHHH
T ss_pred             CCCc---cchHHHHHHHHHHhccCceEEEEC---CHHHHHHhCCCCCc-EEEEecccccCccCCcccccCCCCCCHHHHH
Confidence            8776   566889999999999999999864   77899999999754 88887      3344578888 788999999


Q ss_pred             HHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE--------------eHHHHHHHHHHhhcCc--cEEEEecCCCch
Q 015217          260 SFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF--------------YLEMLLSVAEKFKRGH--YSFVWAAAGKQP  323 (411)
Q Consensus       260 ~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~--~~f~~i~~~~~~  323 (411)
                      +||..+..     |.+.+++..+.......+..+++              +...+..+|++|+++.  +.|+++|..+..
T Consensus       210 ~fi~~~~~-----p~v~e~t~~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~  284 (481)
T 3f8u_A          210 KFIQENIF-----GICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFS  284 (481)
T ss_dssp             HHHHHHTT-----TTSCEECTTTHHHHTTSSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTH
T ss_pred             HHHHHhCC-----CCccccChhHHHHhcCCCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHH
Confidence            99999864     89999999776554433333443              2456889999999764  999999998889


Q ss_pred             hhHHHhCCC--CCCCCeEEEeecCCCccccCCCCCChh--HHHHHHHHHccCCCCCCC
Q 015217          324 DLENRVGVG--GYGYPALVALNVKKGVYTPLKSAFELE--HIVEFVKEAGRGGKGNLP  377 (411)
Q Consensus       324 ~~~~~f~~~--~~~~P~l~v~~~~~~~~~~~~~~~~~~--~i~~fi~~~~~g~~~~~~  377 (411)
                      ..++.||++  ....|++++++..+.+| .++++++.+  .|++|+++++.|+....-
T Consensus       285 ~~l~~~gl~~~~~~~P~~~i~~~~~~ky-~~~~~~t~e~~~l~~f~~~~~~g~~~~~~  341 (481)
T 3f8u_A          285 HELSDFGLESTAGEIPVVAIRTAKGEKF-VMQEEFSRDGKALERFLQDYFDGNLKRYL  341 (481)
T ss_dssp             HHHGGGTCCCCTTCSCEEEEECSSSCEE-ECCSCCCTTSHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHcCCCcccCCCcEEEEEcCCCccc-CCCcccCccHHHHHHHHHHHhcCCccccc
Confidence            999999998  34799999998555566 677889999  999999999999886554

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=2.3e-37  Score=319.21  Aligned_cols=306  Identities=27%  Similarity=0.472  Sum_probs=262.5

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..+.+++.++|. ..  .+++++|.||++||++|+.+.|.|.++++.+++++.|+.|||++++.+|+.|||.++|+++++
T Consensus       440 ~~v~~l~~~~~~-~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  516 (780)
T 3apo_A          440 SHVTTLGPQNFP-AS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF  516 (780)
T ss_dssp             SCEEECCTTTSC-TT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCCEecCHHHHH-Hc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcCCeEEEE
Confidence            347789999988 44  789999999999999999999999999999998999999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcC--CCeEEEEEeC
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKS--KDLWIVEFFA  187 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~--~~~~lv~f~~  187 (411)
                      ++|+. .+|.|.++.+.|.+|+.+.+                       .+++..++.++|.+.+...  +..++|.||+
T Consensus       517 ~~g~~-~~~~g~~~~~~l~~fi~~~~-----------------------~~~v~~l~~~~f~~~v~~~~~~~~~lv~F~a  572 (780)
T 3apo_A          517 NQSSI-HEYEGHHSAEQILEFIEDLR-----------------------NPSVVSLTPSTFNELVKQRKHDEVWMVDFYS  572 (780)
T ss_dssp             ETTEE-EEECSCSCHHHHHHHHHHHH-----------------------SCSEEECCHHHHHHHTTTCCTTCCEEEEEEC
T ss_pred             cCCce-eeecCcccHHHHHHHHHhhc-----------------------ccceeecCcccHHHHhhccCCCCeEEEEEEC
Confidence            87764 88999999999999999886                       3679999999999976553  4689999999


Q ss_pred             CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC---CcccccC-CCCHHHHHHHHH
Q 015217          188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD---SPIPYEG-ARTAGAIESFAL  263 (411)
Q Consensus       188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~---~~~~y~g-~~~~~~i~~fi~  263 (411)
                      +||++|+.+.+.|.++|+.+++++.|+.+||+.+..+|++|+|.++|++++|+.+..   .+..|.| .++.++|.+|+.
T Consensus       573 p~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~  652 (780)
T 3apo_A          573 PWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL  652 (780)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHH
T ss_pred             CCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999987653   3677999 899999999998


Q ss_pred             HHhhhcCCCCCceEeCChhHHHHhcC-CccEEE------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhC
Q 015217          264 EQLETNVAPPEVTELTSQDVMEEKCG-SAAICF------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVG  330 (411)
Q Consensus       264 ~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~  330 (411)
                      +..     ++.+.+++..+..+.... +..+++            +.+.+.++|.+|+++ +.|+.+|.+.++.++++||
T Consensus       653 ~~~-----~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~-~~~~~vd~~~~~~~~~~~~  726 (780)
T 3apo_A          653 GFL-----PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK-VRAGKVDCQAYPQTCQKAG  726 (780)
T ss_dssp             TTS-----CCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTTCHHHHHHTT
T ss_pred             hhc-----ccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-ceEEEEECCCCHHHHHhcC
Confidence            875     366888887655444443 333333            347889999999887 9999999999999999999


Q ss_pred             CCCCCCCeEEEeecCCCccccCCC----CCChhHHHHHHHHHccC
Q 015217          331 VGGYGYPALVALNVKKGVYTPLKS----AFELEHIVEFVKEAGRG  371 (411)
Q Consensus       331 ~~~~~~P~l~v~~~~~~~~~~~~~----~~~~~~i~~fi~~~~~g  371 (411)
                      +..  +|++++++ .++....+.|    ..+.+.|.+||...+..
T Consensus       727 v~~--~Pt~~~~~-~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          727 IKA--YPSVKLYQ-YERAKKSIWEEQINSRDAKTIAALIYGKLET  768 (780)
T ss_dssp             CCS--SSEEEEEE-EETTTTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred             CCc--CCEEEEEc-CCCccccccCcccCCcCHHHHHHHHHHHHHH
Confidence            986  99999994 3333223333    68999999999999754

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=100.00  E-value=1.1e-35  Score=263.79  Aligned_cols=220  Identities=39%  Similarity=0.760  Sum_probs=195.4

Q ss_pred             CCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEeccccHhHHHhcCCCcc
Q 015217           27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV---ATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        27 ~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      .....+..+++++|+ .+..++++++|+||++||++|+.+.|.|.++++.+++.   +.++.|||++++++|++|+|.++
T Consensus        12 ~~~~~v~~l~~~~~~-~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   90 (241)
T 3idv_A           12 KEENGVLVLNDANFD-NFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGY   90 (241)
T ss_dssp             EEETTEEEECTTTHH-HHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSS
T ss_pred             ccCCCcEEecccCHH-HHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcC
Confidence            345779999999999 66678999999999999999999999999999999875   99999999999999999999999


Q ss_pred             cEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEE
Q 015217          104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV  183 (411)
Q Consensus       104 P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv  183 (411)
                      |++++|++|+. .+|.|.++.+.+.+|+.+.+...                .......+..++..++.+.+ ..+++++|
T Consensus        91 Pt~~~~~~g~~-~~~~g~~~~~~l~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~v  152 (241)
T 3idv_A           91 PTIKILKKGQA-VDYEGSRTQEEIVAKVREVSQPD----------------WTPPPEVTLVLTKENFDEVV-NDADIILV  152 (241)
T ss_dssp             SEEEEEETTEE-EECCSCSCHHHHHHHHHHHHSTT----------------CCCCCCSSEECCTTTHHHHH-HHCSEEEE
T ss_pred             CEEEEEcCCCc-ccccCcccHHHHHHHHhhccCcc----------------cccccccceeccHHHHHHhh-ccCCeEEE
Confidence            99999998875 57999999999999998765210                11234568889999999865 56679999


Q ss_pred             EEeCCCChhhhhhhHHHHHHHHHhcCC---eEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHH
Q 015217          184 EFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIES  260 (411)
Q Consensus       184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~  260 (411)
                      .||++||++|+.+.+.|.++++.+.++   +.|+.||++.+++++++|+|.++|++++|++|.  .+.|.|..+.++|.+
T Consensus       153 ~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~g~~~~~~l~~  230 (241)
T 3idv_A          153 EFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGR--PYDYNGPREKYGIVD  230 (241)
T ss_dssp             EEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE--EEECCSCCSHHHHHH
T ss_pred             EEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCe--EEEecCCCCHHHHHH
Confidence            999999999999999999999999765   999999999999999999999999999998765  667999999999999


Q ss_pred             HHHHHhh
Q 015217          261 FALEQLE  267 (411)
Q Consensus       261 fi~~~~~  267 (411)
                      |+.++..
T Consensus       231 ~l~~~~~  237 (241)
T 3idv_A          231 YMIEQSG  237 (241)
T ss_dssp             HHHHHTT
T ss_pred             HHHhhhC
Confidence            9999875

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=3.5e-35  Score=288.22  Aligned_cols=306  Identities=23%  Similarity=0.380  Sum_probs=253.8

Q ss_pred             ccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccHhHHHhcCCC
Q 015217           23 DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQSLAQEYGIR  101 (411)
Q Consensus        23 ~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~  101 (411)
                      ...+...+.+..|++++|+ .++.++++++|.||++||++|+.+.|.|+++++.+++. +.++.|||++++.+|++|+|+
T Consensus         7 ~~~~~~~~~v~~l~~~~f~-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~   85 (504)
T 2b5e_A            7 EAVAPEDSAVVKLATDSFN-EYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP   85 (504)
T ss_dssp             CSSCCTTSSCEECCTTTHH-HHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCC
T ss_pred             CCCCCCCCCcEECCHHHHH-HHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCC
Confidence            3456667889999999999 56678999999999999999999999999999999984 999999999999999999999


Q ss_pred             cccEEEEEeCCCC--CcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCC-
Q 015217          102 GFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSK-  178 (411)
Q Consensus       102 ~~P~~~~~~~g~~--~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-  178 (411)
                      ++|++++|++|+.  ..+|.|.++.+.|.+|+.+.+                       .+.+..+++  +..++.... 
T Consensus        86 ~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~-----------------------~~~v~~i~~--~~~~~~~~~~  140 (504)
T 2b5e_A           86 GFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS-----------------------QPAVAVVAD--LPAYLANETF  140 (504)
T ss_dssp             SSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT-----------------------SCSEEECSC--HHHHHHHSCC
T ss_pred             cCCEEEEEeCCccccceeecCCCCHHHHHHHHHHhc-----------------------CCcceeHHH--HHHHHhcCCC
Confidence            9999999999986  889999999999999999875                       567888887  777654444 


Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-C---C
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-R---T  254 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~---~  254 (411)
                      ...+|.|+.+..   ....+.|.++|..+++++.|+.++     ++++++++.    +++|+..+ ....|.|. +   +
T Consensus       141 ~~~~v~~f~~~~---~~~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~----i~l~~~~~-~~~~~~g~~~~~~~  207 (504)
T 2b5e_A          141 VTPVIVQSGKID---ADFNATFYSMANKHFNDYDFVSAE-----NADDDFKLS----IYLPSAMD-EPVVYNGKKADIAD  207 (504)
T ss_dssp             SSCEEEEEESCC---HHHHHHHHHHHHHTTTTCEEEEEE-----CTTSCCEEE----EEETTEEE-EEEECCSCHHHHTS
T ss_pred             ceEEEEEeCCCC---chHHHHHHHHHHHhhcCcEEEEEH-----HHHHhcCCe----EEecCCCC-cccccCCcccccCC
Confidence            145555555443   567889999999999999999887     467788876    77776533 47889998 6   8


Q ss_pred             HHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE-----------eHHHHHHHHHHhhcCccEEEEecCCCch
Q 015217          255 AGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------YLEMLLSVAEKFKRGHYSFVWAAAGKQP  323 (411)
Q Consensus       255 ~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~  323 (411)
                      .+.|.+||..+..     |.+.+++..+.......+..+++           +...++++|++|+++ +.|+|+|+..++
T Consensus       208 ~~~l~~fi~~~~~-----p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~-i~F~~id~~~~~  281 (504)
T 2b5e_A          208 ADVFEKWLQVEAL-----PYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGL-MNFVSIDARKFG  281 (504)
T ss_dssp             HHHHHHHHHHHSS-----CSSCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTT-CEEEEEEHHHHT
T ss_pred             HHHHHHHHHhccc-----CCcccCCHhHHHHHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhcCCe-eEEEEEehhhhH
Confidence            9999999988854     88999998776555544444333           457899999999987 999999998888


Q ss_pred             hhHHHhCCCCCCCCeEEEeecCC-CccccCC--CC-----------CChhHHHHHHHHHccCCCCC
Q 015217          324 DLENRVGVGGYGYPALVALNVKK-GVYTPLK--SA-----------FELEHIVEFVKEAGRGGKGN  375 (411)
Q Consensus       324 ~~~~~f~~~~~~~P~l~v~~~~~-~~~~~~~--~~-----------~~~~~i~~fi~~~~~g~~~~  375 (411)
                      .+++.||+ ..+.|++++++..+ .+| .++  ++           ++.+.|.+|+.+++.|+..+
T Consensus       282 ~~~~~~gl-~~~~P~v~i~~~~~~~ky-~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p  345 (504)
T 2b5e_A          282 RHAGNLNM-KEQFPLFAIHDMTEDLKY-GLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  345 (504)
T ss_dssp             THHHHTTC-CSCSSEEEEEETTTTEEE-ECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHcCC-cccCCEEEEEeCCcCccc-CCCCCccchhhccccccccCHHHHHHHHHHHHcCCCCh
Confidence            99999999 67899999998743 455 444  55           89999999999999998743

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=3.3e-35  Score=303.17  Aligned_cols=331  Identities=23%  Similarity=0.453  Sum_probs=258.2

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      .+..+..+..|+.++|+ ..+.++++++|+||++||++|+.+.|.|+++++.+.+.+.++.|||++++++|++|+|.++|
T Consensus       111 ~~~~~~~v~~l~~~~f~-~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  189 (780)
T 3apo_A          111 IYDDDPEIITLERREFD-AAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYP  189 (780)
T ss_dssp             TTTTCTTEEECCHHHHH-HHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------C
T ss_pred             ccCCCcceeeechHhHH-hhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceee
Confidence            45667789999999999 55588999999999999999999999999999999988999999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHHH------------HHHHHhh-----------cCCCC--C----------
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIK------------ALLKERL-----------SGKAT--G----------  149 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~------------~~~~~~~-----------~~~~~--~----------  149 (411)
                      ++++|++|+.+.+|.|.++.+.|.+|+.+.+.            ..+.+.+           .....  .          
T Consensus       190 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~vi~f~~~~~~~~~~~~~~~l~~~  269 (780)
T 3apo_A          190 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGM  269 (780)
T ss_dssp             EEEEECTTSCCEECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTCEEEEEEECTTSCCCCHHHHHHHHHH
T ss_pred             eEEEEeCCcEeeEecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCCCEEEEEecCcccccCHHHHHHHHHH
Confidence            99999999888999999999999999865431            0111110           00000  0          


Q ss_pred             ------------CC------------------CC----------------------------------------------
Q 015217          150 ------------GS------------------SD----------------------------------------------  153 (411)
Q Consensus       150 ------------~~------------------~~----------------------------------------------  153 (411)
                                  ..                  ++                                              
T Consensus       270 f~~~~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~v~~it~~~f~~~~  349 (780)
T 3apo_A          270 LDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRL  349 (780)
T ss_dssp             TTTTEEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCCCCEECHHHHHHHH
T ss_pred             hhccceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCCcccCCHHHHHHHh
Confidence                        00                  00                                              


Q ss_pred             -------------------------------C-----------------------C------C-C---------------
Q 015217          154 -------------------------------K-----------------------S------K-S---------------  157 (411)
Q Consensus       154 -------------------------------~-----------------------~------~-~---------------  157 (411)
                                                     .                       |      . .               
T Consensus       350 ~~~~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~~p~i~l~~~~~~e~~~~~~g~~~~~~  429 (780)
T 3apo_A          350 AHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKKILYD  429 (780)
T ss_dssp             TTSEEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCCSCEEEEEESSTTSSEEECCSCCCHHH
T ss_pred             ccCCeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhccccCChhhhccCCCcceeeecccHhhHHH
Confidence                                           0                       0      0 0               


Q ss_pred             --------CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCc
Q 015217          158 --------DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN  229 (411)
Q Consensus       158 --------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~  229 (411)
                              ..+.+..++.+++.+.   .+++++|.||++||++|+.+.|.|.++|+.+++++.|+.||++.+..+++.||
T Consensus       430 i~~f~~~~~~~~v~~l~~~~~~~~---~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~  506 (780)
T 3apo_A          430 ILAFAKESVNSHVTTLGPQNFPAS---DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYN  506 (780)
T ss_dssp             HHHHHHHHHTSCEEECCTTTSCTT---CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT
T ss_pred             HHHHhhhccCCCCEecCHHHHHHc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcC
Confidence                    0123445555555442   45689999999999999999999999999999899999999999999999999


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCC----c--cEEE--------
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGS----A--AICF--------  295 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~----~--~~~~--------  295 (411)
                      |.++|++++++++.  ...|.|..+.++|.+|+.+.+.     +.+..++.. .++.+...    .  .+.|        
T Consensus       507 v~~~Pt~~~~~~g~--~~~~~g~~~~~~l~~fi~~~~~-----~~v~~l~~~-~f~~~v~~~~~~~~~lv~F~ap~C~~c  578 (780)
T 3apo_A          507 IQAYPTTVVFNQSS--IHEYEGHHSAEQILEFIEDLRN-----PSVVSLTPS-TFNELVKQRKHDEVWMVDFYSPWSHPS  578 (780)
T ss_dssp             CCSSSEEEEEETTE--EEEECSCSCHHHHHHHHHHHHS-----CSEEECCHH-HHHHHTTTCCTTCCEEEEEECTTCHHH
T ss_pred             CCcCCeEEEEcCCc--eeeecCcccHHHHHHHHHhhcc-----cceeecCcc-cHHHHhhccCCCCeEEEEEECCCCHHH
Confidence            99999999997644  4788999999999999999885     678888864 45554332    2  1222        


Q ss_pred             --eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCC---ccccCCC-CCChhHHHHHHHHHc
Q 015217          296 --YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKG---VYTPLKS-AFELEHIVEFVKEAG  369 (411)
Q Consensus       296 --~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~---~~~~~~~-~~~~~~i~~fi~~~~  369 (411)
                        +.+.|.++|+.|++. +.|+.+|+..+..+++++++..  +|++++++..+.   .+..|.| ..+.++|.+||.+.+
T Consensus       579 ~~~~p~~~~lA~~~~~~-v~~~~vd~~~~~~l~~~~~v~~--~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~  655 (780)
T 3apo_A          579 QVLMPEWKRMARTLTGL-INVGSVDCGQYHSFCTQENVQR--YPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL  655 (780)
T ss_dssp             HHHHHHHHHHHHHHTTT-SEEEEEETTTTHHHHHHTTCCS--SSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTS
T ss_pred             HHhhHHHHHHHHHhhCC-eEEEEEECcchHHHHHHcCCCC--CCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhc
Confidence              348899999999987 9999999999999999999986  999999976443   4667898 899999999999886


Q ss_pred             c
Q 015217          370 R  370 (411)
Q Consensus       370 ~  370 (411)
                      .
T Consensus       656 ~  656 (780)
T 3apo_A          656 P  656 (780)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.97  E-value=2e-30  Score=243.77  Aligned_cols=227  Identities=23%  Similarity=0.439  Sum_probs=191.8

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCc--ccE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--EHQSLAQEYGIRG--FPT  105 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~--~P~  105 (411)
                      ..+.+++.+++........++++|+||++||++|+++.+.|.++++.+++++.|+.+||+  ..+.+|+.|||.+  +|+
T Consensus       117 p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~  196 (361)
T 3uem_A          117 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPA  196 (361)
T ss_dssp             CSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSE
T ss_pred             CcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCcc
Confidence            346788999998444444568899999999999999999999999999999999999999  7899999999988  999


Q ss_pred             EEEEeCCCCCcccC---CCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CC-CCCCcEEeCccchHHHHhcCCC
Q 015217          106 IKVFVPGKPPVDYQ---GARDVKPIAEFALQQIKALLKERLSGKATGGSSDKS--KS-DSNESIELNSSNFDELVLKSKD  179 (411)
Q Consensus       106 ~~~~~~g~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~l~~~~~~~~~~~~~~  179 (411)
                      ++++..|+....|.   |..+.+.|.+|+.+.+        .++..+...+.+  .. ....+..++..+|.+.+...++
T Consensus       197 ~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l--------~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k  268 (361)
T 3uem_A          197 VRLITLEEEMTKYKPESEELTAERITEFCHRFL--------EGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKK  268 (361)
T ss_dssp             EEEEECC--CCEECCSSCCCCHHHHHHHHHHHH--------TTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTC
T ss_pred             EEEEEcCCcccccCCCccccCHHHHHHHHHHHh--------cCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCC
Confidence            99998866566776   7899999999998765        344333333332  11 4567999999999998877889


Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCC--eEEEEEeCCCchhHHhhCccccccEEEEEcCC-CCCcccccCCCCHH
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGK--VKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-KDSPIPYEGARTAG  256 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~--~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~-~~~~~~y~g~~~~~  256 (411)
                      +++|.||++||++|+.+.|.|.++++.+.++  +.++.+|++.+.  +++|+|.++|++++|..+ +....+|.|.++.+
T Consensus       269 ~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~  346 (361)
T 3uem_A          269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLD  346 (361)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSSSCCCEECCSCSSHH
T ss_pred             cEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCCCcceeEecCCCCHH
Confidence            9999999999999999999999999999875  999999998876  789999999999999655 45689999999999


Q ss_pred             HHHHHHHHHh
Q 015217          257 AIESFALEQL  266 (411)
Q Consensus       257 ~i~~fi~~~~  266 (411)
                      .|.+|+.++.
T Consensus       347 ~l~~~l~~~~  356 (361)
T 3uem_A          347 GFKKFLESGG  356 (361)
T ss_dssp             HHHHHHTTTS
T ss_pred             HHHHHHHhcC
Confidence            9999998764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.97  E-value=2.7e-30  Score=226.78  Aligned_cols=196  Identities=21%  Similarity=0.284  Sum_probs=168.2

Q ss_pred             CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCCcccEEEEEeCCCC-CcccCCCC
Q 015217           47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGAR  122 (411)
Q Consensus        47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~  122 (411)
                      ++++++++||++ ||++|+.+.|.|+++++. .+++.++.+||++  ++++|++|||.++|++++|.+|+. ..+|.|..
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~   99 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEEEeccC
Confidence            456788999999 999999999999999865 5689999999999  999999999999999999988866 47899999


Q ss_pred             CcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeE-EEEEeCCCChhhhhhhHHHH
Q 015217          123 DVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLW-IVEFFAPWCGHCKKLAPEWK  201 (411)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~-lv~f~~~~c~~c~~~~~~~~  201 (411)
                      +.+.+.+|+...+...                     .....++...+... ...++++ +|.||++||++|+.+.+.|.
T Consensus       100 ~~~~l~~~l~~~l~~~---------------------~~~~~l~~~~~~~~-~~~~~~~~~v~F~a~wC~~C~~~~p~~~  157 (226)
T 1a8l_A          100 AGHEFAAFLEDIVDVS---------------------REETNLMDETKQAI-RNIDQDVRILVFVTPTCPYCPLAVRMAH  157 (226)
T ss_dssp             CTTHHHHHHHHHHHHH---------------------HTCCCCCHHHHHHH-TTCCSCEEEEEEECSSCTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhc---------------------CCCCCCCHHHHHHH-HhcCCCcEEEEEeCCCCCccHHHHHHHH
Confidence            9999999988765311                     12345677777764 3444555 99999999999999999999


Q ss_pred             HHHHHhc----CCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          202 KAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       202 ~~a~~~~----~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +++..+.    +.+.++.||++.+..++++|+|.++|++++|++|.. ...|.|..+.+.+.+|+.+.+
T Consensus       158 ~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~-~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          158 KFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGED-RVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEE-EEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCce-eEEEcCCCCHHHHHHHHHHhh
Confidence            9999998    579999999999999999999999999999986543 678899999999999998764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.97  E-value=1.1e-29  Score=223.18  Aligned_cols=196  Identities=16%  Similarity=0.222  Sum_probs=166.9

Q ss_pred             cCCCeEEEEEE-----CCCChhhhhhhHHHHHHHHHh--CCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCccc
Q 015217           46 NANGVVLVEFY-----APWCGHCQALTPIWEKAATVL--KGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY  118 (411)
Q Consensus        46 ~~~~~~~v~f~-----~~~C~~C~~~~~~~~~~~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~  118 (411)
                      ...++++|.||     ++||++|+.+.|.|.+++..+  .+++.++.|||+.++++|++|||+++|++++|++|....+|
T Consensus        18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~   97 (229)
T 2ywm_A           18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRY   97 (229)
T ss_dssp             HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEE
T ss_pred             hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCccccee
Confidence            44556666555     899999999999999998888  67899999999999999999999999999999877778899


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhH
Q 015217          119 QGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP  198 (411)
Q Consensus       119 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~  198 (411)
                      .|.++.+.+.+|+.+.+..                     ...+..++...+..........+++.||++||++|+.+.+
T Consensus        98 ~G~~~~~~l~~~~~~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~  156 (229)
T 2ywm_A           98 IGLPAGLEFTTLINGIFHV---------------------SQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAV  156 (229)
T ss_dssp             ESCCCTTHHHHHHHHHHHH---------------------HTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHhc---------------------cCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHH
Confidence            9999999999999876521                     1335667888888754333345588999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          199 EWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       199 ~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      .+.+++..+ +.+.++.||++.++.++++|+|.++|++++  +|.  ..+|.|..+.+.+.+|+.+.+.
T Consensus       157 ~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~--~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          157 MAWDFALAN-DYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG--VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHHHHC-TTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG--TEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE--EEEeeCCCCHHHHHHHHHHHhh
Confidence            999999998 579999999999999999999999999998  333  5669999999999999988764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-28  Score=221.23  Aligned_cols=229  Identities=33%  Similarity=0.578  Sum_probs=184.9

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCc
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--EHQSLAQEYGIRG  102 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~  102 (411)
                      .......+++|+.++|++.+...+++++|+||++||++|+.+.|.|+++++.+.+.+.++.|||+  +++++|++|+|.+
T Consensus        12 ~~~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~   91 (298)
T 3ed3_A           12 FYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNG   91 (298)
T ss_dssp             SCSSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCB
T ss_pred             CCCCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCc
Confidence            45567789999999999655567889999999999999999999999999999988999999998  6889999999999


Q ss_pred             ccEEEEEeCCC-----------------CCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEe
Q 015217          103 FPTIKVFVPGK-----------------PPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIEL  165 (411)
Q Consensus       103 ~P~~~~~~~g~-----------------~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  165 (411)
                      +|++++|.+|+                 ....|.|.++.+.|++|+.+.+                       .+.+..+
T Consensus        92 ~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~-----------------------~~~v~~i  148 (298)
T 3ed3_A           92 FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI-----------------------RSYVKKF  148 (298)
T ss_dssp             SSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC-----------------------CCCEEEC
T ss_pred             cceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc-----------------------ccccEEc
Confidence            99999999886                 2578999999999999998763                       5678888


Q ss_pred             Cc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH--hhCc-----c-------
Q 015217          166 NS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM--SKFN-----V-------  230 (411)
Q Consensus       166 ~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~--~~~~-----v-------  230 (411)
                      ++ +++.+++...+.+.+++|...     ....+.|.++|..|++++.|+.++......+.  ++|+     |       
T Consensus       149 ~~~~~l~~~l~~~~~~~vi~fs~~-----~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~  223 (298)
T 3ed3_A          149 VRIDTLGSLLRKSPKLSVVLFSKQ-----DKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKV  223 (298)
T ss_dssp             SCGGGHHHHHTSCSSEEEEEEESS-----SSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCceEEEEEcCC-----CcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcc
Confidence            55 567776554457777777543     35679999999999999999998833221111  2333     3       


Q ss_pred             ------ccccEEEEEcCCCCCcccccC-CCCHHHHHHHHHHHhhhcCCCCCceEeCChhHH
Q 015217          231 ------QGFPTILVFGADKDSPIPYEG-ARTAGAIESFALEQLETNVAPPEVTELTSQDVM  284 (411)
Q Consensus       231 ------~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~  284 (411)
                            ...|+|++|+...+.++.|.| ..+.++|.+||.+...   ..|.+.+++..+.+
T Consensus       224 ~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~---~~p~~~~ls~~~~~  281 (298)
T 3ed3_A          224 IPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFS---ITPNEGPFSRRSEY  281 (298)
T ss_dssp             HHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHT---CCCSSSTTSHHHHH
T ss_pred             cccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcC---CCCCcCCCchHHHH
Confidence                  568999999887777999996 6899999999996654   34777777775533

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.96  E-value=1.8e-26  Score=216.90  Aligned_cols=306  Identities=14%  Similarity=0.226  Sum_probs=244.0

Q ss_pred             CCCCcEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           28 SSSPVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        28 ~~~~~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      .+..+..+++ ++++ .++..+..++|.|+.+.+..+   ...+.+++..+ +.+.|+.+   .++++|+++++.. |++
T Consensus        15 ~~~~~~~l~~~~~~~-~~~~~~~~~vvgff~~~~~~~---~~~f~~~A~~~-~~~~F~~t---~~~~v~~~~~v~~-~~i   85 (361)
T 3uem_A           15 GSEFATTLPDGAAAE-SLVESSEVAVIGFFKDVESDS---AKQFLQAAEAI-DDIPFGIT---SNSDVFSKYQLDK-DGV   85 (361)
T ss_dssp             CCSSSEECCSHHHHH-HHHHTSSEEEEEECSCTTSHH---HHHHHHHHHHC-SSSCEEEE---CCHHHHHHTTCSS-SEE
T ss_pred             ccccceecCCHHHHH-HHHhcCCcEEEEEEcCCCchH---HHHHHHHHhcC-CCceEEEE---CcHHHHHHhCCCC-CeE
Confidence            4455677755 6666 667788999999998776655   46888999988 56788644   4789999999988 999


Q ss_pred             EEEeC-CCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEE
Q 015217          107 KVFVP-GKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEF  185 (411)
Q Consensus       107 ~~~~~-g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f  185 (411)
                      ++|+. ......|.|..+.+.|.+|+...                       ..+.+.+++.+++...+....++++|+|
T Consensus        86 ~lfk~f~~~~~~~~g~~~~~~i~~fi~~~-----------------------~~p~v~~~~~~~~~~~~~~~~~~~~v~F  142 (361)
T 3uem_A           86 VLFKKFDEGRNNFEGEVTKENLLDFIKHN-----------------------QLPLVIEFTEQTAPKIFGGEIKTHILLF  142 (361)
T ss_dssp             EEEESSTTSEEECCSCCCHHHHHHHHHHH-----------------------SSCSEEECSTTTHHHHHSCSCCEEEEEE
T ss_pred             EEEEecCCCccccCCcCCHHHHHHHHHHc-----------------------CCCcceecCcccHHHHhcCCCCcEEEEE
Confidence            99976 23457889999999999999876                       4678999999999997666667889999


Q ss_pred             eCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--CchhHHhhCcccc--ccEEEEEcCCCCCccccc---CCCCHHHH
Q 015217          186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQG--FPTILVFGADKDSPIPYE---GARTAGAI  258 (411)
Q Consensus       186 ~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~--~P~i~~~~~~~~~~~~y~---g~~~~~~i  258 (411)
                      +++||++|+.+.+.|.++|+.+++++.|+.+||+  ....+++.||+..  +|+++++..++. ...|.   |..+.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~-~~ky~~~~~~~~~~~l  221 (361)
T 3uem_A          143 LPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE-MTKYKPESEELTAERI  221 (361)
T ss_dssp             CCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC---CCEECCSSCCCCHHHH
T ss_pred             EeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCc-ccccCCCccccCHHHH
Confidence            9999999999999999999999999999999999  6889999999987  999999987442 45665   78999999


Q ss_pred             HHHHHHHhhhcCC-------------CCCceEeCChhHHHHhc-CCccEEE------------eHHHHHHHHHHhhcC-c
Q 015217          259 ESFALEQLETNVA-------------PPEVTELTSQDVMEEKC-GSAAICF------------YLEMLLSVAEKFKRG-H  311 (411)
Q Consensus       259 ~~fi~~~~~~~~~-------------~~~v~~l~~~~~~~~~~-~~~~~~~------------~~~~~~~~a~~~~~~-~  311 (411)
                      .+|+...+.....             ...+..++..+...... .++.+++            +.+.|.++|..|+++ .
T Consensus       222 ~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~  301 (361)
T 3uem_A          222 TEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHEN  301 (361)
T ss_dssp             HHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSS
T ss_pred             HHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCc
Confidence            9999998764321             12367777765544443 3333333            448999999999875 5


Q ss_pred             cEEEEecCCCchhhHHHhCCCCCCCCeEEEeecC-CCccccCCCCCChhHHHHHHHHHcc
Q 015217          312 YSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK-KGVYTPLKSAFELEHIVEFVKEAGR  370 (411)
Q Consensus       312 ~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~-~~~~~~~~~~~~~~~i~~fi~~~~~  370 (411)
                      +.|+.+|...+.  +..|++..  +|++++++.. +.....|.|..+.+.|.+||++...
T Consensus       302 v~~~~vd~~~~~--~~~~~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  357 (361)
T 3uem_A          302 IVIAKMDSTANE--VEAVKVHS--FPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQ  357 (361)
T ss_dssp             EEEEEEETTTCB--CSSCCCCS--SSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTTSC
T ss_pred             EEEEEEECCccc--hhhcCCcc--cCeEEEEECCCCcceeEecCCCCHHHHHHHHHhcCC
Confidence            899999987665  67899986  9999999644 4456789999999999999987643

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.95  E-value=2.8e-26  Score=202.41  Aligned_cols=201  Identities=13%  Similarity=0.185  Sum_probs=163.4

Q ss_pred             cchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHh---CCC--eEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           38 NNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVL---KGV--ATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~---~~~--i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      +++.+.+..-+++++|.||++|  |++|+.+.+.+.++++..   +++  +.|+.+|+++++++|++|||.++|++.++ 
T Consensus        15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-   93 (243)
T 2hls_A           15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-   93 (243)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-
Confidence            4555444445689999999999  999999999999999884   444  99999999999999999999999999998 


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCC
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWC  190 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c  190 (411)
                      +|  ..+|.|..+...+..|+...+...      +               ....++...+........+.+++.||++||
T Consensus        94 ~g--~~~~~G~~~~~~l~~fv~~~l~~~------~---------------~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC  150 (243)
T 2hls_A           94 GG--EVRWTGIPAGEEIRALVEVIMRLS------E---------------DESGLEDATKEALKSLKGRVHIETIITPSC  150 (243)
T ss_dssp             TT--TEEEESCCCTTHHHHHHHHHHHHH------T---------------TCCCCCHHHHHHHHHCCSCEEEEEEECSSC
T ss_pred             CC--ceeEcCCCcHHHHHHHHHHHHhcc------C---------------CCCCCCHHHHHHHHHcCCCcEEEEEECCCC
Confidence            55  688999888888998887665211      1               111234444444222235678999999999


Q ss_pred             hhhhhhhHHHHHHHHHhc----CCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          191 GHCKKLAPEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       191 ~~c~~~~~~~~~~a~~~~----~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|+.+.|.|.+++..+.    ..+.++.||++.++.++++|+|.++|++++  + ++  ..|.|..+.++|.+++.+.+
T Consensus       151 ~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~-G~--~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          151 PYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--N-GY--LVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--T-TE--EEEESCCCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--C-CE--EEEeCCCCHHHHHHHHHHHh
Confidence            999999999999999983    569999999999999999999999999988  3 32  34999999999999999987


Q ss_pred             h
Q 015217          267 E  267 (411)
Q Consensus       267 ~  267 (411)
                      .
T Consensus       226 ~  226 (243)
T 2hls_A          226 E  226 (243)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.93  E-value=1.2e-23  Score=186.43  Aligned_cols=216  Identities=22%  Similarity=0.386  Sum_probs=161.4

Q ss_pred             cccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEec--cccHhHHH
Q 015217           22 SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDA--NEHQSLAQ   96 (411)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~--~~~~~~~~   96 (411)
                      ..+++...+.+..++.++|+..+..++++++|+||++||++|+++.|.|+++++.+++   .+.++.|||  ++++++|+
T Consensus         4 ~~~l~~~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~   83 (244)
T 3q6o_A            4 MSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCR   83 (244)
T ss_dssp             --CCSCTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHH
T ss_pred             ccCCCCCCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHH
Confidence            3457778889999999999977777789999999999999999999999999999987   799999999  67899999


Q ss_pred             hcCCCcccEEEEEeCCCCC-----cccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchH
Q 015217           97 EYGIRGFPTIKVFVPGKPP-----VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFD  171 (411)
Q Consensus        97 ~~~i~~~P~~~~~~~g~~~-----~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  171 (411)
                      +|+|.++|++++|.+|+..     .++.| .+.+.+.+++.+.++...            .+ .....+++..++..++.
T Consensus        84 ~~~v~~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~------------~~-~p~~~p~l~~~~~~~l~  149 (244)
T 3q6o_A           84 DFNIPGFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHH------------DT-WPPACPPLEPAXLEEID  149 (244)
T ss_dssp             HTTCCSSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCT------------TS-CCTTSCCCSCCCHHHHH
T ss_pred             HcCCCccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhcc------------cc-CCCCCCCcccccHHHHH
Confidence            9999999999999875432     25666 688999999988774211            01 11233444556667777


Q ss_pred             HHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCccc
Q 015217          172 ELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP  248 (411)
Q Consensus       172 ~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~  248 (411)
                      .++... ....+++|....|       ....+++..+..  .+.+..++ +.+..++++|||+.+|+++++..++. ...
T Consensus       150 ~~~~~~~~~~~al~f~~~~~-------~~~~~~~~d~~~~~~i~v~~~~-~~~~~l~~~f~v~~~Pslvl~~~~g~-~~~  220 (244)
T 3q6o_A          150 GFFARNNEEYLALIFEXGGS-------YLAREVALDLSQHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLLFRNGS-VSR  220 (244)
T ss_dssp             THHHHCCCSEEEEEEECTTC-------CHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSC-EEE
T ss_pred             HHhhcCCCceEEEEEEECCc-------chHHHHHHHhccCCceEEEEEe-CchHHHHHHcCCCCCCeEEEEeCCCC-eEe
Confidence            766544 3466677776543       234455556663  58888777 55689999999999999999986654 666


Q ss_pred             ccCCCCHHHHHH
Q 015217          249 YEGARTAGAIES  260 (411)
Q Consensus       249 y~g~~~~~~i~~  260 (411)
                      +.......+..+
T Consensus       221 ~~~~~~~r~~~~  232 (244)
T 3q6o_A          221 VPVLMESRSFYT  232 (244)
T ss_dssp             CCCSSSSHHHHH
T ss_pred             eccccccHHHHH
Confidence            665444433333

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.3e-24  Score=192.12  Aligned_cols=207  Identities=28%  Similarity=0.518  Sum_probs=170.9

Q ss_pred             CCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--CchhHHhhCccccc
Q 015217          156 KSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQGF  233 (411)
Q Consensus       156 ~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~~  233 (411)
                      ....+.+++|+..+|.+.+.+.+++++|.||++||++|+.+.|.|.++++.+.+.+.++.|+|+  .+..+|++|+|.++
T Consensus        13 ~~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~   92 (298)
T 3ed3_A           13 YDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGF   92 (298)
T ss_dssp             CSSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred             CCCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCcc
Confidence            3467889999999999987667789999999999999999999999999999988999999998  67899999999999


Q ss_pred             cEEEEEcCCC----------------CCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCc-cEEE-
Q 015217          234 PTILVFGADK----------------DSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSA-AICF-  295 (411)
Q Consensus       234 P~i~~~~~~~----------------~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-~~~~-  295 (411)
                      |++++|+++.                .....|.|.++.+.|.+|+.+.+.     +.+.++++.+.++.+.... .+++ 
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~-----~~v~~i~~~~~l~~~l~~~~~~~vi  167 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR-----SYVKKFVRIDTLGSLLRKSPKLSVV  167 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC-----CCEEECSCGGGHHHHHTSCSSEEEE
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc-----cccEEcCCHHHHHHHHhcCCceEEE
Confidence            9999998764                136789999999999999998864     6788898877777766542 2222 


Q ss_pred             -------eHHHHHHHHHHhhcCccEEEEecCCCchhhH--HHhC-----C-----------CCCCCCeEEEeecCCCccc
Q 015217          296 -------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLE--NRVG-----V-----------GGYGYPALVALNVKKGVYT  350 (411)
Q Consensus       296 -------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~--~~f~-----~-----------~~~~~P~l~v~~~~~~~~~  350 (411)
                             ....|..+|..|+++ +.|+.+...+.....  ++|+     +           .....|+|++|+...+++.
T Consensus       168 ~fs~~~~~~~~f~~~A~~~~~~-~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~  246 (298)
T 3ed3_A          168 LFSKQDKISPVYKSIALDWLGK-FDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW  246 (298)
T ss_dssp             EEESSSSCCHHHHHHHHHTBTT-EEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEE
T ss_pred             EEcCCCcchHHHHHHHHHhhcC-cEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceE
Confidence                   348999999999998 999999874333222  3333     1           1135999999998888999


Q ss_pred             cCCC-CCChhHHHHHHHHH
Q 015217          351 PLKS-AFELEHIVEFVKEA  368 (411)
Q Consensus       351 ~~~~-~~~~~~i~~fi~~~  368 (411)
                      .|+| .++.++|.+||.+.
T Consensus       247 ~y~g~~~~~~~i~~fi~~~  265 (298)
T 3ed3_A          247 EYEGNSINKNDISKFLRDT  265 (298)
T ss_dssp             ECCCSSCCHHHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHHhh
Confidence            9995 69999999999865

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.92  E-value=3.4e-23  Score=183.23  Aligned_cols=206  Identities=32%  Similarity=0.532  Sum_probs=169.8

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---eEEEEEeCCCchhHHhhCcccccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ....+..++.++|.+.+ ..+++++|.||++||++|+.+.|.|.++++.+.+.   +.|+.||++.+..++++|+|.++|
T Consensus        13 ~~~~v~~l~~~~~~~~~-~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   91 (241)
T 3idv_A           13 EENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYP   91 (241)
T ss_dssp             EETTEEEECTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cCCCcEEecccCHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCC
Confidence            45679999999999864 66789999999999999999999999999999876   999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCC--CCCceEeCChhHHHHhcCCccEEE------------eHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA--PPEVTELTSQDVMEEKCGSAAICF------------YLEML  300 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~--~~~v~~l~~~~~~~~~~~~~~~~~------------~~~~~  300 (411)
                      ++++|+++.  .+.|.|..+.+.+.+|+.+.......  ...+..++..+.-.....+..+++            +.+.+
T Consensus        92 t~~~~~~g~--~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~  169 (241)
T 3idv_A           92 TIKILKKGQ--AVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEY  169 (241)
T ss_dssp             EEEEEETTE--EEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHH
T ss_pred             EEEEEcCCC--cccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHH
Confidence            999998765  56899999999999999998764322  223555555444333333344333            34789


Q ss_pred             HHHHHHhhcC--ccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHcc
Q 015217          301 LSVAEKFKRG--HYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGR  370 (411)
Q Consensus       301 ~~~a~~~~~~--~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~  370 (411)
                      ..+|..++++  .+.|+.+|.+.+++++++|++..  +|++++++  +++...|.|..+.++|.+||.+.+.
T Consensus       170 ~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~Pt~~~~~--~g~~~~~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          170 EKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG--YPTLKIFR--KGRPYDYNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             HHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCS--SSEEEEEE--TTEEEECCSCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcc--cCEEEEEE--CCeEEEecCCCCHHHHHHHHHhhhC
Confidence            9999999864  38999999999999999999986  99999996  3445569999999999999998853

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.91  E-value=2.5e-23  Score=194.23  Aligned_cols=207  Identities=18%  Similarity=0.237  Sum_probs=174.1

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHH-------HHHHHHHhcC-CeEEEEEeCCCchhHHhhCc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPE-------WKKAANNLKG-KVKLGHVDCDSEKSLMSKFN  229 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~-------~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~  229 (411)
                      ..+.+..|+..+|.+.+ ..+++++|.||++||+ |+.+.|.       |.++|+.+.+ .+.|+.|||+.+..+|++|+
T Consensus         9 ~~~~v~~l~~~~f~~~i-~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~   86 (350)
T 1sji_A            9 GKDRVVSLTEKNFKQVL-KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLG   86 (350)
T ss_dssp             CCCCCEEECHHHHHHHH-TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHT
T ss_pred             CCCccEECCHHHHHHHH-hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcC
Confidence            34669999999999864 5678999999999999 9999888       9999999987 49999999999999999999


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC-Ccc-EEE---------eHH
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCG-SAA-ICF---------YLE  298 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~-~~~---------~~~  298 (411)
                      |.++|++++|++|.  ...|.|.++.+.|.+|+.+.+.     |.+.++++.+.++.+.. ... .++         ..+
T Consensus        87 v~~~Pt~~~~~~g~--~~~~~G~~~~~~l~~~i~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~  159 (350)
T 1sji_A           87 FDEEGSLYVLKGDR--TIEFDGEFAADVLVEFLLDLIE-----DPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYK  159 (350)
T ss_dssp             CCSTTEEEEEETTE--EEEECSCCCHHHHHHHHHTTSS-----CSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHH
T ss_pred             CCccceEEEEECCc--EEEecCCCCHHHHHHHHHHhcC-----CcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHH
Confidence            99999999998765  7799999999999999998874     77889988777777654 333 222         247


Q ss_pred             HHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCC-CChhHHHHHHHHHccCCCCCCC
Q 015217          299 MLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSA-FELEHIVEFVKEAGRGGKGNLP  377 (411)
Q Consensus       299 ~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~-~~~~~i~~fi~~~~~g~~~~~~  377 (411)
                      .|..+|..+++. +.|+.+..   ++++++++++   .|+++++++.++.+..|+|. ++.++|.+||.....+......
T Consensus       160 ~~~~~A~~~~~~-~~f~~~~~---~~~~~~~~v~---~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt  232 (350)
T 1sji_A          160 AFEEAAEHFQPY-IKFFATFD---KGVAKKLSLK---MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLR  232 (350)
T ss_dssp             HHHHHHHHTTTT-SEEEEECC---HHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCSEEECC
T ss_pred             HHHHHHHhhccC-cEEEEECC---HHHHHHcCCC---CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCccchhhcC
Confidence            999999999988 99998865   7899999997   89999998766677789987 9999999999998665544444


Q ss_pred             CCC
Q 015217          378 LDG  380 (411)
Q Consensus       378 ~~~  380 (411)
                      ...
T Consensus       233 ~~~  235 (350)
T 1sji_A          233 PED  235 (350)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            433

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.91  E-value=4.4e-23  Score=193.43  Aligned_cols=199  Identities=19%  Similarity=0.245  Sum_probs=168.7

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhh------HHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCcc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLA------PEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNV  230 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~------~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v  230 (411)
                      ..+.|..|+..+|.+.+ ..+++++|.||++||++|....      +.|.++|..+.+ .+.|+.|||+.++.+|++|||
T Consensus        11 ~~~~v~~lt~~~f~~~i-~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V   89 (367)
T 3us3_A           11 GVDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL   89 (367)
T ss_dssp             CCCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTC
T ss_pred             CCCccEECCHHHHHHHH-hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCC
Confidence            45679999999999965 6688999999999999974433      689999999987 499999999999999999999


Q ss_pred             ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC-Ccc-EEE---------eHHH
Q 015217          231 QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCG-SAA-ICF---------YLEM  299 (411)
Q Consensus       231 ~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~-~~~---------~~~~  299 (411)
                      +++||+++|++|.  ...|.|.++.+.|.+|+.+++.     +.+..+++.+.++.+.. ... .++         ..+.
T Consensus        90 ~~~PTl~~f~~G~--~~~y~G~~~~~~i~~~i~~~~~-----~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~  162 (367)
T 3us3_A           90 TEEDSIYVFKEDE--VIEYDGEFSADTLVEFLLDVLE-----DPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKA  162 (367)
T ss_dssp             CSTTEEEEEETTE--EEECCSCCSHHHHHHHHHHHHS-----CSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHH
T ss_pred             CcCceEEEEECCc--EEEeCCCCCHHHHHHHHHHhcC-----CCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHH
Confidence            9999999999764  6799999999999999999875     77889988777777655 322 222         3468


Q ss_pred             HHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCC-CChhHHHHHHHHHccC
Q 015217          300 LLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSA-FELEHIVEFVKEAGRG  371 (411)
Q Consensus       300 ~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~-~~~~~i~~fi~~~~~g  371 (411)
                      |..+|..+++. +.|+.+..   ..++++++++   .|++++|++..+....|+|. .+.+.|.+||......
T Consensus       163 f~~~A~~~~~~-~~F~~~~~---~~~~~~~~v~---~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  228 (367)
T 3us3_A          163 FKEAAEEFHPY-IPFFATFD---SKVAKKLTLK---LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRS  228 (367)
T ss_dssp             HHHHHHHHTTT-SCEEEECC---HHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSC
T ss_pred             HHHHHHhhcCC-cEEEEECC---HHHHHHcCCC---CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCcc
Confidence            99999999988 89998876   7899999997   59999998766677788985 9999999999987543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.89  E-value=5.5e-22  Score=193.41  Aligned_cols=204  Identities=28%  Similarity=0.511  Sum_probs=173.0

Q ss_pred             CcEEeCccchHHHHhcCC---CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          161 ESIELNSSNFDELVLKSK---DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~---~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .|..|+..+|.+.+ ..+   ++++|.||++||++|+.+.|.|.++++.+.+.+.|+.|||+.+..+|++|||.++|+++
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~   80 (481)
T 3f8u_A            2 DVLELTDDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLK   80 (481)
T ss_dssp             CCEEECTTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred             ceEEecHHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            47899999999976 555   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEE---E-------eHHHHHHHHHHh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAIC---F-------YLEMLLSVAEKF  307 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~---~-------~~~~~~~~a~~~  307 (411)
                      +|++|. ....|.|..+.+.|.+|+.+.+.     |.+.++++.+.++.+...+.++   |       ..+.|..+|..+
T Consensus        81 ~~~~g~-~~~~~~G~~~~~~l~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~  154 (481)
T 3f8u_A           81 IFRDGE-EAGAYDGPRTADGIVSHLKKQAG-----PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNL  154 (481)
T ss_dssp             EEETTE-EEEECCSCSSHHHHHHHHHHHTS-----CSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred             EEeCCc-eeeeecCccCHHHHHHHHHhhcc-----cCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHh
Confidence            998764 37889999999999999999875     7789999988888877665522   2       348999999999


Q ss_pred             hcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeec------CCCccccCC-CCCChhHHHHHHHHHccCCCCCCCC
Q 015217          308 KRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNV------KKGVYTPLK-SAFELEHIVEFVKEAGRGGKGNLPL  378 (411)
Q Consensus       308 ~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~------~~~~~~~~~-~~~~~~~i~~fi~~~~~g~~~~~~~  378 (411)
                      +++ +.|+.+..   .+++++++++.   |.+++|++      ..+....|+ +.++.+.|.+||.....+.......
T Consensus       155 ~~~-~~F~~~~~---~~~~~~~~v~~---~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~  225 (481)
T 3f8u_A          155 RDN-YRFAHTNV---ESLVNEYDDNG---EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTE  225 (481)
T ss_dssp             TTT-SCEEEECC---HHHHHHHCSSS---EEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECT
T ss_pred             ccC-ceEEEECC---HHHHHHhCCCC---CcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccCh
Confidence            988 89998865   88999999974   44888873      244556788 7899999999999987655444433

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.89  E-value=1.1e-21  Score=190.22  Aligned_cols=220  Identities=21%  Similarity=0.354  Sum_probs=164.6

Q ss_pred             cccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecc--ccHhHHH
Q 015217           22 SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDAN--EHQSLAQ   96 (411)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~--~~~~~~~   96 (411)
                      ..+++...+.+.+++.++|+..+..++++++|+|||+||++|+.+.|.|+++++.+++   .+.++.|||+  +++++|+
T Consensus         4 ~~~Ly~~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~   83 (519)
T 3t58_A            4 MSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCR   83 (519)
T ss_dssp             -CCSCCTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHH
T ss_pred             ccccCCCCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHH
Confidence            4467778889999999999976777789999999999999999999999999999987   7999999995  5889999


Q ss_pred             hcCCCcccEEEEEeCC----CCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHH
Q 015217           97 EYGIRGFPTIKVFVPG----KPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDE  172 (411)
Q Consensus        97 ~~~i~~~P~~~~~~~g----~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  172 (411)
                      +|+|.++|++++|.+|    +....+.|..+.+.+.+++.+.++..        .     .......+++..++..++..
T Consensus        84 ~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~--------~-----~~~P~~~p~l~~it~~~l~~  150 (519)
T 3t58_A           84 EFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH--------R-----DTWPPACPPLEPAKLNDIDG  150 (519)
T ss_dssp             HTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTC--------C-----SCCCTTCCCCSBCCHHHHTT
T ss_pred             HcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhc--------c-----ccCCCCCCccCcCCHHHHHH
Confidence            9999999999999853    33466778899999999998876311        0     01112334455667777777


Q ss_pred             HHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccc
Q 015217          173 LVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY  249 (411)
Q Consensus       173 ~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y  249 (411)
                      ++... ..+.++.|....       .....+++..+..  .+.+..+. +.+..++++|||+.+|+++++..++. ...+
T Consensus       151 ~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~~~Pslvl~~~nGk-~~~~  221 (519)
T 3t58_A          151 FFTRNKADYLALVFERED-------SYLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVTDFPSCYLLLRNGS-VSRV  221 (519)
T ss_dssp             GGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSC-EEEC
T ss_pred             HhccCCCCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCCCCCeEEEEeCCCc-eeec
Confidence            65444 346677777643       2356677777764  48887776 55789999999999999999987664 3334


Q ss_pred             cCCCCH-HHHHHHHH
Q 015217          250 EGARTA-GAIESFAL  263 (411)
Q Consensus       250 ~g~~~~-~~i~~fi~  263 (411)
                      ....+. ..+..++.
T Consensus       222 ~v~~~~r~~~~~~l~  236 (519)
T 3t58_A          222 PVLVESRSFYTSYLR  236 (519)
T ss_dssp             CCSSCSHHHHHHHHT
T ss_pred             ccccccHHHHHHHHH
Confidence            333333 33445544

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.88  E-value=6.5e-22  Score=186.75  Aligned_cols=197  Identities=19%  Similarity=0.379  Sum_probs=143.7

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHh------cCCeEEEEEeCCCchhHHhhCccccc
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL------KGKVKLGHVDCDSEKSLMSKFNVQGF  233 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~------~~~~~f~~v~~~~~~~l~~~~~v~~~  233 (411)
                      +.+..|+..+|.+. ...+++++|.||++||++|+.+.|.|.++|+.+      .+.+.|+.|||+.+..+|++|+|.++
T Consensus         5 ~~v~~l~~~~f~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            5 SEITSLDTENIDEI-LNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ---CBCCTTTHHHH-HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CceEECCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            45888999999985 466789999999999999999999999999999      34699999999999999999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCcc--EEE-------eHHHHHHHH
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAA--ICF-------YLEMLLSVA  304 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~~-------~~~~~~~~a  304 (411)
                      |++++|++|......|.|.++.+.|.+|+.+.+.     +.+.++++.+.++.+.....  ++|       ..+.|..+|
T Consensus        84 Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~-----~~v~~l~~~~~l~~l~~~~~~~v~ff~~~~~~~~~~f~~~A  158 (382)
T 2r2j_A           84 PTLKLFRNGMMMKREYRGQRSVKALADYIRQQKS-----DPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVA  158 (382)
T ss_dssp             SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHS-----CCCEEC------------CCEEEEEESCSSSHHHHHHHHHH
T ss_pred             CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhcc-----CCceecCCHHHHHHhcCCCCEEEEEECCCCChhHHHHHHHH
Confidence            9999998765322369999999999999999985     56778877666665433333  233       246899999


Q ss_pred             HHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecC--CCccccCCCCC-ChhHHHHHHHHHccC
Q 015217          305 EKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK--KGVYTPLKSAF-ELEHIVEFVKEAGRG  371 (411)
Q Consensus       305 ~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~--~~~~~~~~~~~-~~~~i~~fi~~~~~g  371 (411)
                      ..++++ +.|+...+    ++++.++++.  .|  +++++.  ......|+|.+ +.++|.+||......
T Consensus       159 ~~~~~~-~~F~~~~~----~~~~~~~v~~--~p--i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  219 (382)
T 2r2j_A          159 NILHDD-CAFLSAFG----DVSKPERYSG--DN--IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVP  219 (382)
T ss_dssp             HHHTTT-CEEEEEES----CC----------CE--EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSC
T ss_pred             HHhhcc-ceEEEEeh----hhHHhhCCCC--Cc--eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccC
Confidence            999988 88877765    3677788864  77  455543  23456789998 999999999987643

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.87  E-value=7.1e-21  Score=166.38  Aligned_cols=199  Identities=16%  Similarity=0.207  Sum_probs=161.0

Q ss_pred             CCCcEEe-CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          159 SNESIEL-NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       159 ~~~v~~l-~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ...++.| +.+++.++ .+.+++++|.|+++||   ....+.|.++|..++ .+.|+.+.   +++++++|+++. |+|+
T Consensus         8 ~~~~~~l~s~~~~~~~-l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~-~~~F~~t~---~~~v~~~~~v~~-p~i~   78 (227)
T 4f9z_D            8 AQEPTWLTDVPAAMEF-IAATEVAVIGFFQDLE---IPAVPILHSMVQKFP-GVSFGIST---DSEVLTHYNITG-NTIC   78 (227)
T ss_dssp             -CCCEECCSHHHHHHH-HHTSSEEEEEECSCSC---STHHHHHHHHTTTCT-TSEEEEEC---CHHHHHHTTCCS-SEEE
T ss_pred             cCCCeeeCCHHHHHHH-HhcCCeEEEEEecCCC---chhHHHHHHHHHhCC-CceEEEEC---CHHHHHHcCCCC-CeEE
Confidence            4445666 44777775 5778899999999986   789999999999994 89999854   788999999998 9999


Q ss_pred             EEcCCCCCcccccC----CCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCcc---EEE----------eHHHH
Q 015217          238 VFGADKDSPIPYEG----ARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAA---ICF----------YLEML  300 (411)
Q Consensus       238 ~~~~~~~~~~~y~g----~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~---~~~----------~~~~~  300 (411)
                      +|+...+....|.|    .++.+.|.+|+..+.     .|.+.+++..+....+..+.+   ++|          +.+.+
T Consensus        79 lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~-----~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~  153 (227)
T 4f9z_D           79 LFRLVDNEQLNLEDEDIESIDATKLSRFIEINS-----LHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRY  153 (227)
T ss_dssp             EEETTTTEEEEECHHHHHTCCHHHHHHHHHHHC-----CCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHH
T ss_pred             EEEecCcccccccccccCCCCHHHHHHHHHHhC-----CCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHH
Confidence            99976555678884    789999999999985     499999998776555544433   223          35889


Q ss_pred             HHHHHHhhcCccEEEEecCCC--chhhHHHhCCCCCCCCeEEEeecCCCc-cccCCCCCChhHHHHHHHHHccCC
Q 015217          301 LSVAEKFKRGHYSFVWAAAGK--QPDLENRVGVGGYGYPALVALNVKKGV-YTPLKSAFELEHIVEFVKEAGRGG  372 (411)
Q Consensus       301 ~~~a~~~~~~~~~f~~i~~~~--~~~~~~~f~~~~~~~P~l~v~~~~~~~-~~~~~~~~~~~~i~~fi~~~~~g~  372 (411)
                      +.+|++|+++ +.|+|+|.+.  +...++.||+...++|++++++..+++ |..-.++++.++|.+|++++++|+
T Consensus       154 ~~vAk~~k~~-i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          154 QKAAKLFQGK-ILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             HHHHHHTTTT-CEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhCC-EEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            9999999998 9999999863  667899999986679999999976654 533347899999999999999996

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=167.57  Aligned_cols=207  Identities=21%  Similarity=0.313  Sum_probs=165.8

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ..+++..|++.+..+.+...+.+++|.|+++||   ....+.|.++|..+++++.|+.+.   +..++++|++.. |+|+
T Consensus         4 ~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~   76 (252)
T 2h8l_A            4 GSPASVPLRTEEEFKKFISDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGII   76 (252)
T ss_dssp             --CCEEECCSHHHHHHHHTSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEE
T ss_pred             CCCCceeecCHHHHHHHhhcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEE
Confidence            457799997655444456777789999999886   678899999999999999999874   677999999997 9999


Q ss_pred             EEcCC------CCCcccc-cCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE---------------
Q 015217          238 VFGAD------KDSPIPY-EGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF---------------  295 (411)
Q Consensus       238 ~~~~~------~~~~~~y-~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~---------------  295 (411)
                      +|+++      .+....| .|.++.+.|.+||..+..     |.+.+++..+.....  ..++++               
T Consensus        77 ~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~-----Plv~e~t~~n~~~~~--~~~~~v~~~~~~~~~~~~~~~  149 (252)
T 2h8l_A           77 LFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF-----GICPHMTEDNKDLIQ--GKDLLIAYYDVDYEKNAKGSN  149 (252)
T ss_dssp             EECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS-----CSSCEECTTTHHHHS--SSSEEEEEECCBTTTBHHHHH
T ss_pred             EEcchhhcccccccccccCCCCcCHHHHHHHHHhccc-----CCeeecccccHhhhc--CCCeEEEEeecchhhcchhHH
Confidence            99853      2346789 999999999999999864     999999998865542  333332               


Q ss_pred             -eHHHHHHHHHHhhcC--ccEEEEecCCCchhhHHHhCC--CCCCCCeEEEeecCCCccccCCCCCChhH--HHHHHHHH
Q 015217          296 -YLEMLLSVAEKFKRG--HYSFVWAAAGKQPDLENRVGV--GGYGYPALVALNVKKGVYTPLKSAFELEH--IVEFVKEA  368 (411)
Q Consensus       296 -~~~~~~~~a~~~~~~--~~~f~~i~~~~~~~~~~~f~~--~~~~~P~l~v~~~~~~~~~~~~~~~~~~~--i~~fi~~~  368 (411)
                       +...+..+|++|+++  .+.|+|+|...+..+++.||+  +..++|+++|++..+.+| .++++++.+.  |.+|++++
T Consensus       150 ~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky-~~~~~~t~~~~~i~~F~~~~  228 (252)
T 2h8l_A          150 YWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKF-VMQEEFSRDGKALERFLQDY  228 (252)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSCEE-ECCSCCCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCcEe-cCCcccCcchHHHHHHHHHH
Confidence             246788899999964  599999999988889999999  556899999998766677 4678899999  99999999


Q ss_pred             ccCCCCCCCCCC
Q 015217          369 GRGGKGNLPLDG  380 (411)
Q Consensus       369 ~~g~~~~~~~~~  380 (411)
                      +.|+++. .+.+
T Consensus       229 ~~Gkl~~-~~kS  239 (252)
T 2h8l_A          229 FDGNLKR-YLKS  239 (252)
T ss_dssp             HHTCSCC-CC--
T ss_pred             HCCCccc-cccC
Confidence            9998844 4443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.86  E-value=1.1e-20  Score=185.12  Aligned_cols=224  Identities=21%  Similarity=0.395  Sum_probs=177.8

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCC-CcccEEEEEe
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGI-RGFPTIKVFV  110 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i-~~~P~~~~~~  110 (411)
                      +.+++.+++. .+...+.++++.|+...... ..+.+.+.++++.+++++.|+.+|++..+.+++.+|+ ..+|+++++.
T Consensus       223 v~~~t~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~a~~~~~~i~F~~id~~~~~~~~~~~gl~~~~P~v~i~~  300 (504)
T 2b5e_A          223 FGEIDGSVFA-QYVESGLPLGYLFYNDEEEL-EEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD  300 (504)
T ss_dssp             SCBCCHHHHH-HHHHTTSCEEEEEESSHHHH-HHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             cccCCHhHHH-HHhcCCCcEEEEEecCcccH-HHHHHHHHHHHHhcCCeeEEEEEehhhhHHHHHHcCCcccCCEEEEEe
Confidence            4567777777 56677888888888765443 7788999999999999999999999999999999999 4589999998


Q ss_pred             CCCC-CcccC--CC-----------CCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCCcEEeCccchHHHH
Q 015217          111 PGKP-PVDYQ--GA-----------RDVKPIAEFALQQIKALLKERLSGKATGGSSDK--SKSDSNESIELNSSNFDELV  174 (411)
Q Consensus       111 ~g~~-~~~~~--g~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~  174 (411)
                      .... ...+.  +.           .+.+.+..|+.+.+        .++.....++.  +......+..++..+|...+
T Consensus       301 ~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~--------~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v  372 (504)
T 2b5e_A          301 MTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFL--------KGDASPIVKSQEIFENQDSSVFQLVGKNHDEIV  372 (504)
T ss_dssp             TTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHH--------HTCCCCCCCCCCCCCCCSCSEEEECTTTHHHHH
T ss_pred             CCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHH--------cCCCChhhhcCCCCccccccceecccccHHHhh
Confidence            6332 22222  33           56677777776654        34443333333  23345789999999999987


Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-C--CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-Cccccc
Q 015217          175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-G--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYE  250 (411)
Q Consensus       175 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~-~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~  250 (411)
                      .+.+++++|.||++||++|+.+.|.|.++++.+. +  .+.++.+|++.+... . |+|.++||+++|++|.. ....|.
T Consensus       373 ~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~~~~~~~~~  450 (504)
T 2b5e_A          373 NDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGKKSESVVYQ  450 (504)
T ss_dssp             HCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTTSCCCCBCC
T ss_pred             ccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCceecceEec
Confidence            7778899999999999999999999999999987 3  699999998876543 4 99999999999976543 378899


Q ss_pred             CCCCHHHHHHHHHHHhh
Q 015217          251 GARTAGAIESFALEQLE  267 (411)
Q Consensus       251 g~~~~~~i~~fi~~~~~  267 (411)
                      |..+.+.+.+|+.++..
T Consensus       451 G~~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          451 GSRSLDSLFDFIKENGH  467 (504)
T ss_dssp             SCCCHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHhcCC
Confidence            99999999999999864

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.85  E-value=6.9e-21  Score=150.79  Aligned_cols=112  Identities=24%  Similarity=0.453  Sum_probs=96.8

Q ss_pred             ccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-----CCeEEEEEeccccHhHHHh
Q 015217           23 DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-----GVATVAALDANEHQSLAQE   97 (411)
Q Consensus        23 ~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~i~~~~vd~~~~~~~~~~   97 (411)
                      .+.+..+..+..|++++|+..+..++++++|.||++||++|+.+.|.|+++++.+.     +++.++.|||++++++|++
T Consensus         8 ~~~~~~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~   87 (127)
T 3h79_A            8 ANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIER   87 (127)
T ss_dssp             -----CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHH
T ss_pred             CCCcCCCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHh
Confidence            34566778899999999996665679999999999999999999999999998763     4699999999999999999


Q ss_pred             cCCCcccEEEEEeCCCCC--cccCCCCCcchhHHHHHHH
Q 015217           98 YGIRGFPTIKVFVPGKPP--VDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus        98 ~~i~~~P~~~~~~~g~~~--~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+|.++|++++|.+|+..  .+|.|.++.+.|.+|+.+.
T Consensus        88 ~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           88 MRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             TTCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             cCCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999999999999988663  6899999999999999763

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.84  E-value=1.6e-19  Score=160.04  Aligned_cols=202  Identities=18%  Similarity=0.249  Sum_probs=162.8

Q ss_pred             CCCCcEEeCc-cchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNS-SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~-~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      +.+.+..|++ +++.++ .+. +++++|.|++++|   ....+.|.++|..+++.+.|+.+.   +.+++++++++. |+
T Consensus         4 ~gP~v~~l~s~~~~~~~-~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~-p~   75 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEF-LKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL-GK   75 (250)
T ss_dssp             -CCSSEECCCHHHHHHH-HHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS-SE
T ss_pred             CCCCceecCCHHHHHHH-HhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC-Ce
Confidence            4678899976 566664 555 7889999999876   689999999999999999999864   678999999987 99


Q ss_pred             EEEEcCC------CCCccccc--CCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE------------
Q 015217          236 ILVFGAD------KDSPIPYE--GARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF------------  295 (411)
Q Consensus       236 i~~~~~~------~~~~~~y~--g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~------------  295 (411)
                      |++|+.+      .+....|.  |..+.+.|.+|+..+..     |.+.+++..+....+ .+.++++            
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~-----Plv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~  149 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL-----PLVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYR  149 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS-----CTEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTH
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCC-----CceeecCccchhhhh-ccCccEEEEEecccccccc
Confidence            9999853      24467888  47899999999999864     999999998766555 3444333            


Q ss_pred             -----eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCC-CeEEEeecCCCccccCCCCCChhHHHHHHHHHc
Q 015217          296 -----YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGY-PALVALNVKKGVYTPLKSAFELEHIVEFVKEAG  369 (411)
Q Consensus       296 -----~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~-P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~  369 (411)
                           +.+.++.+|++|+ + +.|+|+|..++...++.||+...+. |.+++++..+.+|..-.++++.++|.+|+++++
T Consensus       150 ~~~~~~~~~~~~vAk~~k-k-i~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~  227 (250)
T 3ec3_A          150 TATQFWRNKVLEVAKDFP-E-YTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFK  227 (250)
T ss_dssp             HHHHHHHHHHHHHHTTCT-T-SEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSCEEECCCCSCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhc-c-eeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCceecCCcccCCHHHHHHHHHHHH
Confidence                 2467889999999 6 9999999988888999999986444 688888866667744337899999999999999


Q ss_pred             cCCCCC
Q 015217          370 RGGKGN  375 (411)
Q Consensus       370 ~g~~~~  375 (411)
                      +|+.++
T Consensus       228 ~Gkl~p  233 (250)
T 3ec3_A          228 KGKLKP  233 (250)
T ss_dssp             TTCCCC
T ss_pred             CCCccc
Confidence            998644

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.84  E-value=5.7e-19  Score=156.17  Aligned_cols=205  Identities=21%  Similarity=0.408  Sum_probs=149.8

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeC--CCchhHHhhCcccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDC--DSEKSLMSKFNVQG  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~--~~~~~l~~~~~v~~  232 (411)
                      ....+..++..+|.+.+.+.+++++|.||++||++|+.+.|.|.++++.+.+   .+.|+.|||  +.+..+|++|+|.+
T Consensus        10 ~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~   89 (244)
T 3q6o_A           10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG   89 (244)
T ss_dssp             TTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS
T ss_pred             CCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc
Confidence            4578999999999998877789999999999999999999999999999987   799999999  66889999999999


Q ss_pred             ccEEEEEcCCCCC----cccccCCCCHHHHHHHHHHHhhhcCC-----CCCceEeCChhHHHHh---cCCccEEEe----
Q 015217          233 FPTILVFGADKDS----PIPYEGARTAGAIESFALEQLETNVA-----PPEVTELTSQDVMEEK---CGSAAICFY----  296 (411)
Q Consensus       233 ~P~i~~~~~~~~~----~~~y~g~~~~~~i~~fi~~~~~~~~~-----~~~v~~l~~~~~~~~~---~~~~~~~~~----  296 (411)
                      +|++++|+.+...    .+.+.| .+.+.|.+++.+.+.....     .|.+..++..+ +..+   .....+.++    
T Consensus        90 ~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~-l~~~~~~~~~~~~al~f~~~  167 (244)
T 3q6o_A           90 FPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEE-IDGFFARNNEEYLALIFEXG  167 (244)
T ss_dssp             SSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHH-HHTHHHHCCCSEEEEEEECT
T ss_pred             cCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHH-HHHHhhcCCCceEEEEEEEC
Confidence            9999999864431    235666 6999999999998875432     12233333333 3322   222223222    


Q ss_pred             -HHHHHHHHHHhhcC-ccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCC-CCCChhHHHHHHHHH
Q 015217          297 -LEMLLSVAEKFKRG-HYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLK-SAFELEHIVEFVKEA  368 (411)
Q Consensus       297 -~~~~~~~a~~~~~~-~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~-~~~~~~~i~~fi~~~  368 (411)
                       ......++..+... .+.+..+.. ....++++||++.  +|+++++++++ +...+. ...+.+.+..+|+.+
T Consensus       168 ~~~~~~~~~~d~~~~~~i~v~~~~~-~~~~l~~~f~v~~--~Pslvl~~~~g-~~~~~~~~~~~r~~~~~~l~~~  238 (244)
T 3q6o_A          168 GSYLAREVALDLSQHKGVAVRRVLN-TEANVVRKFGVTD--FPSCYLLFRNG-SVSRVPVLMESRSFYTAYLQRL  238 (244)
T ss_dssp             TCCHHHHHHHHTTTCTTEEEEEEET-TCHHHHHHHTCCC--SSEEEEEETTS-CEEECCCSSSSHHHHHHHHHTC
T ss_pred             CcchHHHHHHHhccCCceEEEEEeC-chHHHHHHcCCCC--CCeEEEEeCCC-CeEeeccccccHHHHHHHHHhC
Confidence             13455666666643 266665554 4588999999986  99999998654 443444 345666666666655

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.83  E-value=4.3e-19  Score=155.02  Aligned_cols=206  Identities=15%  Similarity=0.186  Sum_probs=168.5

Q ss_pred             CCcEEe-CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           30 SPVVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        30 ~~~~~l-~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ..+..| +.++++ .++..+++++|-|+++||   ....+.|.++|..+ +.+.|+.+.   ++++|++|++.+ |++++
T Consensus         9 ~~~~~l~s~~~~~-~~l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l-~~~~F~~t~---~~~v~~~~~v~~-p~i~l   79 (227)
T 4f9z_D            9 QEPTWLTDVPAAM-EFIAATEVAVIGFFQDLE---IPAVPILHSMVQKF-PGVSFGIST---DSEVLTHYNITG-NTICL   79 (227)
T ss_dssp             CCCEECCSHHHHH-HHHHTSSEEEEEECSCSC---STHHHHHHHHTTTC-TTSEEEEEC---CHHHHHHTTCCS-SEEEE
T ss_pred             CCCeeeCCHHHHH-HHHhcCCeEEEEEecCCC---chhHHHHHHHHHhC-CCceEEEEC---CHHHHHHcCCCC-CeEEE
Confidence            445566 557888 567789999999999985   68899999999999 478888754   788999999998 99999


Q ss_pred             EeCCCC-CcccCC----CCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEE
Q 015217          109 FVPGKP-PVDYQG----ARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV  183 (411)
Q Consensus       109 ~~~g~~-~~~~~g----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv  183 (411)
                      |+.... ...|.|    .++.+.|.+|+...                       ..+.+.+++.+++...+......+++
T Consensus        80 fk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~-----------------------~~plv~e~t~~n~~~~~~~~~~~~~l  136 (227)
T 4f9z_D           80 FRLVDNEQLNLEDEDIESIDATKLSRFIEIN-----------------------SLHMVTEYNPVTVIGLFNSVIQIHLL  136 (227)
T ss_dssp             EETTTTEEEEECHHHHHTCCHHHHHHHHHHH-----------------------CCCSEEECCHHHHHHHHHSSCCEEEE
T ss_pred             EEecCcccccccccccCCCCHHHHHHHHHHh-----------------------CCCceeecCcccHHHHhccCCceEEE
Confidence            987533 456774    78999999999876                       46889999999998875444456667


Q ss_pred             EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccc--cccEEEEEcCCCCCcccc-cCCCCHHHH
Q 015217          184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQ--GFPTILVFGADKDSPIPY-EGARTAGAI  258 (411)
Q Consensus       184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~--~~P~i~~~~~~~~~~~~y-~g~~~~~~i  258 (411)
                      +|..+||+.|..+.+.|.++|+.+++++.|+.+|++.  ...+++.||+.  .+|+++++...+...+.+ .|.++.++|
T Consensus       137 ~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i  216 (227)
T 4f9z_D          137 LIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHV  216 (227)
T ss_dssp             EEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHH
T ss_pred             EEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHH
Confidence            7888999999999999999999999999999999864  55788999998  789999997554323444 378999999


Q ss_pred             HHHHHHHhh
Q 015217          259 ESFALEQLE  267 (411)
Q Consensus       259 ~~fi~~~~~  267 (411)
                      .+|+...+.
T Consensus       217 ~~Fv~~~~~  225 (227)
T 4f9z_D          217 QNFCDGFLS  225 (227)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            999987653

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=8.9e-20  Score=144.98  Aligned_cols=114  Identities=54%  Similarity=1.006  Sum_probs=104.1

Q ss_pred             ccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCc
Q 015217           23 DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRG  102 (411)
Q Consensus        23 ~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~  102 (411)
                      ..++.....+..++.++|+..+..++++++|+||++||++|+.+.|.+.++++.+++.+.++.+|++++++++++|+|.+
T Consensus        10 ~~l~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   89 (130)
T 2dml_A           10 SGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQG   89 (130)
T ss_dssp             CCSSCTTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCS
T ss_pred             ccccCCCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCc
Confidence            35667778899999999996677788999999999999999999999999999998889999999999999999999999


Q ss_pred             ccEEEEEeCCCC-CcccCCCCCcchhHHHHHHHHH
Q 015217          103 FPTIKVFVPGKP-PVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       103 ~P~~~~~~~g~~-~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +|++++|.+|+. +.+|.|..+.+.+.+|+.+.+.
T Consensus        90 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           90 FPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             SSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            999999988776 7899999999999999988763

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.82  E-value=7.4e-20  Score=141.11  Aligned_cols=107  Identities=21%  Similarity=0.361  Sum_probs=99.4

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...+..++.++|...+..++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|+|.++|++++
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   82 (111)
T 3gnj_A            3 AMSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILY   82 (111)
T ss_dssp             CCCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred             CCcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEE
Confidence            45688999999996665889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+|+.+.++.|..+.+.+.+++.+.+
T Consensus        83 ~~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           83 FKDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeccCCHHHHHHHHHHHh
Confidence            999988889999999999999998875

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.81  E-value=6.5e-20  Score=139.31  Aligned_cols=100  Identities=23%  Similarity=0.505  Sum_probs=86.4

Q ss_pred             EEe-CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           33 VQL-TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        33 ~~l-~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .++ +.++|++.+.. ++++++|.|||+||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|+++||+++|+
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~   81 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLFMK   81 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEEEE
Confidence            344 44688855543 47899999999999999999999999999876 4889999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|+.+.++.| .+.+.|.+++.++
T Consensus        82 ~G~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           82 NGQKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             TTEEEEEEES-CCHHHHHHHHHHH
T ss_pred             CCEEEEEEeC-cCHHHHHHHHHhc
Confidence            9988888888 4788888888754

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.81  E-value=8.6e-19  Score=153.27  Aligned_cols=184  Identities=16%  Similarity=0.199  Sum_probs=145.7

Q ss_pred             CCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccccccEEEEEcCCCCCcccccCCCC
Q 015217          178 KDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       178 ~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                      +.+++++||++ ||++|+.+.+.+.++++. .+++.|+.||++.  ++.++++|||.++|++++|+++.....+|.|..+
T Consensus        22 ~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~~  100 (226)
T 1a8l_A           22 NPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPA  100 (226)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC
T ss_pred             CCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEEEeccCc
Confidence            45778999999 999999999999999965 5689999999999  8999999999999999999877654578999888


Q ss_pred             HHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhc-CCccE-EE------------eHHHHHHHHHHhhc---CccEEEEe
Q 015217          255 AGAIESFALEQLETNVAPPEVTELTSQDVMEEKC-GSAAI-CF------------YLEMLLSVAEKFKR---GHYSFVWA  317 (411)
Q Consensus       255 ~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~~~-~~------------~~~~~~~~a~~~~~---~~~~f~~i  317 (411)
                      .+.+.+|+...+.....   ...++. +.++.+. ...++ ++            ..+.+.+++..+.+   ..+.|+.+
T Consensus       101 ~~~l~~~l~~~l~~~~~---~~~l~~-~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~v  176 (226)
T 1a8l_A          101 GHEFAAFLEDIVDVSRE---ETNLMD-ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMV  176 (226)
T ss_dssp             TTHHHHHHHHHHHHHHT---CCCCCH-HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             HHHHHHHHHHHHhhcCC---CCCCCH-HHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEE
Confidence            88999999886643222   222333 3344433 22333 22            34788999999983   23999999


Q ss_pred             cCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHc
Q 015217          318 AAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAG  369 (411)
Q Consensus       318 ~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~  369 (411)
                      |.+.++.++++|++..  +|++++++ +++....+.|..+.++|.+||+..+
T Consensus       177 d~~~~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          177 EAIEYPEWADQYNVMA--VPKIVIQV-NGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             EGGGCHHHHHHTTCCS--SCEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EcccCHHHHHhCCCcc--cCeEEEEe-CCceeEEEcCCCCHHHHHHHHHHhh
Confidence            9988899999999986  99999886 4444556889999999999999875

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.81  E-value=1.4e-19  Score=138.81  Aligned_cols=106  Identities=35%  Similarity=0.706  Sum_probs=97.7

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +.+..++.++|+..+..++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|++++|
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            46789999999966677889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      .+|+.+.++.|..+.+.+.+++.+.+
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           82 KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            88887788999999999999988764

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.81  E-value=9.8e-20  Score=142.40  Aligned_cols=108  Identities=11%  Similarity=0.148  Sum_probs=98.1

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCC--hhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWC--GHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C--~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ......+++++|++.+...+++++|+||++||  ++|+.+.|.++++++.+.+++.+++||.|++++++.+|||+++||+
T Consensus        14 ~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTl   93 (137)
T 2qsi_A           14 PNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSL   93 (137)
T ss_dssp             ---CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEE
T ss_pred             hcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEE
Confidence            35567999999997665555699999999999  9999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      ++|++|+.+.+..|..+.+.+.+++.+.+.
T Consensus        94 ilFkdG~~v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           94 AVVQPERTLGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             EEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999988773

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.81  E-value=2.3e-19  Score=144.49  Aligned_cols=114  Identities=22%  Similarity=0.391  Sum_probs=104.9

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...+..+++++|.+.+..++++++|+||++||++|+.+.|.|.++++.+++++.|+.||++++++++++|+|.++|++++
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   84 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF   84 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence            46688999999997777889999999999999999999999999999999899999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHh
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQIKALLKER  142 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~  142 (411)
                      |.+|+.+.++.|..+.+.+.+++.+.++......
T Consensus        85 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~  118 (140)
T 3hz4_A           85 FCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECI  118 (140)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCcEEEEEcCCCCHHHHHHHHHHHhcccccCc
Confidence            9999888899999999999999999887655443

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=143.58  Aligned_cols=110  Identities=50%  Similarity=0.909  Sum_probs=100.8

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEeccccHhHHHhcCCCcc
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK----GVATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      ....+..++.++|++.+..++++++|+||++||++|+.+.|.+.++++.++    +++.++.||++++++++++|+|.++
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             SCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            456689999999996666788999999999999999999999999999987    7899999999999999999999999


Q ss_pred             cEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHH
Q 015217          104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus       104 P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                      |++++|.+|+.+.+|.|..+.+.+.+|+.+.+..
T Consensus        85 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           85 PTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             SEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhc
Confidence            9999999988788999999999999999988754

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.80  E-value=1.7e-19  Score=143.00  Aligned_cols=108  Identities=11%  Similarity=0.158  Sum_probs=95.1

Q ss_pred             cEEeCc-cchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           32 VVQLTP-NNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l~~-~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +..++. ++|++.+. .++++++|.|||+||++|+.+.|.++++++++.+++.|++||+|+.++++.+|+|...||+++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            556665 78986666 4788999999999999999999999999999998899999999999999999999999999999


Q ss_pred             eCCCCC--c-------ccCCCCC-cchhHHHHHHHHHHHH
Q 015217          110 VPGKPP--V-------DYQGARD-VKPIAEFALQQIKALL  139 (411)
Q Consensus       110 ~~g~~~--~-------~~~g~~~-~~~l~~~~~~~~~~~~  139 (411)
                      .+|+.+  .       +..|..+ .+.|.+++...++.+.
T Consensus       103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~  142 (160)
T 2av4_A          103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGAR  142 (160)
T ss_dssp             ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhh
Confidence            999875  3       6888876 7889999988876664

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.80  E-value=2.3e-19  Score=137.72  Aligned_cols=106  Identities=31%  Similarity=0.569  Sum_probs=98.1

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...+..++.++|+ .++.++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|++++
T Consensus         3 ~~~v~~l~~~~~~-~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A            3 EDVTLVLTEENFD-EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLI   81 (109)
T ss_dssp             CCCCEECCTTTHH-HHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCeEEEecHHHHH-HHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEE
Confidence            4568899999999 566779999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+|+.+.++.|..+.+.+.+++.+.+
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           82 FVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            998988889999999999999998764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.80  E-value=2.3e-18  Score=150.78  Aligned_cols=189  Identities=20%  Similarity=0.207  Sum_probs=145.0

Q ss_pred             chHHHH-hcCCCeEEEEEe-----CCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          169 NFDELV-LKSKDLWIVEFF-----APWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       169 ~~~~~~-~~~~~~~lv~f~-----~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      ++.+.+ .+...+++|.||     ++||++|+.+.+.|.++|+.+  .+++.++.|||+.++.+|++|||+++|++++|+
T Consensus        10 ~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~   89 (229)
T 2ywm_A           10 QLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEG   89 (229)
T ss_dssp             HHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEES
T ss_pred             HHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEEC
Confidence            344444 244455555555     788999999999999999888  678999999999999999999999999999997


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhc-CCccE-E--E----------eHHHHHHHHHH
Q 015217          241 ADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKC-GSAAI-C--F----------YLEMLLSVAEK  306 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~~~-~--~----------~~~~~~~~a~~  306 (411)
                      + +....+|.|..+.+++.+|+.........   ...++. +.++.+. ...++ +  |          ..+.+.+++..
T Consensus        90 ~-~~~~~~~~G~~~~~~l~~~~~~~~~~~~~---~~~l~~-~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~  164 (229)
T 2ywm_A           90 D-KDYGIRYIGLPAGLEFTTLINGIFHVSQR---KPQLSE-KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA  164 (229)
T ss_dssp             S-SCCCEEEESCCCTTHHHHHHHHHHHHHTT---CCSCCH-HHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHH
T ss_pred             C-CcccceecCCccHHHHHHHHHHHHhccCC---ccCCCH-HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHH
Confidence            5 44578999999999999999887643322   334444 3344433 23333 2  2          34788888888


Q ss_pred             hhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHcc
Q 015217          307 FKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGR  370 (411)
Q Consensus       307 ~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~  370 (411)
                      + +. +.|+.+|.+.+++++++|++..  +|++++ +  + +...+.|..+.++|.+||+..+.
T Consensus       165 ~-~~-v~~~~vd~~~~~~l~~~~~v~~--~Pt~~~-~--G-~~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          165 N-DY-ITSKVIDASENQDLAEQFQVVG--VPKIVI-N--K-GVAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             C-TT-EEEEEEEGGGCHHHHHHTTCCS--SSEEEE-G--G-GTEEEESCCCHHHHHHHHHHHHH
T ss_pred             C-CC-eEEEEEECCCCHHHHHHcCCcc--cCEEEE-C--C-EEEEeeCCCCHHHHHHHHHHHhh
Confidence            8 34 9999999988999999999986  999998 3  2 34457899999999999998864

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.80  E-value=2.9e-19  Score=141.41  Aligned_cols=107  Identities=35%  Similarity=0.673  Sum_probs=98.4

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...+..++.++|+..+..++++++|+||++||++|+.+.|.+.++++.+++++.++.||++++++++++|+|.++|++++
T Consensus        21 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  100 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL  100 (128)
T ss_dssp             CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEE
T ss_pred             ccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            45688999999996667789999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+|+.+.++.|..+.+.+.+++.+.+
T Consensus       101 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          101 FKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            988887788999999999999998764

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.79  E-value=3.4e-19  Score=136.39  Aligned_cols=104  Identities=26%  Similarity=0.535  Sum_probs=95.9

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +.+.++++++|...+..++++++|.||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|++++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            45789999999966667889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      .+|+.+.++.|..+.+.+.+++.+
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~  105 (107)
T 2i4a_A           82 RDGKVIDKKVGALPKSQLKAWVES  105 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHH
T ss_pred             eCCEEEEEecCCCCHHHHHHHHHh
Confidence            888877889999999999988875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.79  E-value=5.6e-19  Score=136.39  Aligned_cols=106  Identities=27%  Similarity=0.529  Sum_probs=97.6

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..+..+++++|...+..++++++|.||++||++|+.+.|.+.++++.+++++.++.+|++.+++++++|++.++|+++++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   84 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVY   84 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEE
Confidence            45789999999867777889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      .+|+.+.++.|..+.+.+.+++.+.+
T Consensus        85 ~~G~~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           85 QGGEVAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            98887788999999999999988765

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.79  E-value=1.9e-18  Score=136.70  Aligned_cols=108  Identities=20%  Similarity=0.471  Sum_probs=97.7

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-----CCeEEEEEeCCCchhHHhhCcccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-----GKVKLGHVDCDSEKSLMSKFNVQG  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~-----~~~~f~~v~~~~~~~l~~~~~v~~  232 (411)
                      ..+.+..|+.++|.+.+.+.+++++|.||++||++|+.+.|.|.++++.+.     +.+.|+.|||+.+..++++|+|.+
T Consensus        13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   92 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG   92 (127)
T ss_dssp             CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence            467899999999999877778899999999999999999999999998764     469999999999999999999999


Q ss_pred             ccEEEEEcCCCCC-cccccCCCCHHHHHHHHHHH
Q 015217          233 FPTILVFGADKDS-PIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       233 ~P~i~~~~~~~~~-~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +|++++|++++.. +..|.|..+.+.|.+|+.++
T Consensus        93 ~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           93 FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999999877643 37899999999999999875

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.79  E-value=3.6e-19  Score=135.97  Aligned_cols=102  Identities=34%  Similarity=0.592  Sum_probs=94.6

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..+.++++++|++.+  ++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|+++++
T Consensus         3 ~~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 3die_A            3 MAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF   80 (106)
T ss_dssp             CCCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             cceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEE
Confidence            467899999999544  899999999999999999999999999999998899999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      ++|+.+.++.|..+.+.+.+++.+
T Consensus        81 ~~G~~~~~~~g~~~~~~l~~~l~~  104 (106)
T 3die_A           81 KDGQPVDKVVGFQPKENLAEVLDK  104 (106)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHT
T ss_pred             eCCeEEEEEeCCCCHHHHHHHHHH
Confidence            988888899999999999988865

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.79  E-value=7.8e-19  Score=136.20  Aligned_cols=107  Identities=26%  Similarity=0.501  Sum_probs=98.5

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      +..+.+++.++|...+..++++++|.||++||++|+.+.|.++++++.+++++.++.+|++.+++++++|+|.++|++++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~   85 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL   85 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence            35588999999996666788999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+|+.+.++.|..+.+.+.+++.+.+
T Consensus        86 ~~~G~~~~~~~g~~~~~~l~~~l~~~l  112 (115)
T 1thx_A           86 VKGEQILDSTEGVISKDKLLSFLDTHL  112 (115)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence            988887778999999999999998775

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.79  E-value=4.7e-19  Score=138.44  Aligned_cols=108  Identities=29%  Similarity=0.533  Sum_probs=98.7

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .+..+..+++++|.+.+..++++++|+||++||++|+.+.|.+.++++.+.+++.++.+|++++++++++|+|.++|+++
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   90 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL   90 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEE
Confidence            45668889999999777778899999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|++|+.+.++.|..+.+.+.+++.+.+
T Consensus        91 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           91 AMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            9988887778999999999999987654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.78  E-value=5.9e-19  Score=135.07  Aligned_cols=104  Identities=34%  Similarity=0.575  Sum_probs=95.5

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .+..+++++|.+.+..++++++|.||++||++|+.+.|.+.++++.+++++.++.+|++.+++++++|++.++|++++++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   81 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK   81 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEe
Confidence            46789999999666678899999999999999999999999999999888999999999999999999999999999998


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|+.+.++.|..+.+.+.+++.+.
T Consensus        82 ~G~~~~~~~G~~~~~~l~~~l~~~  105 (107)
T 1dby_A           82 GGKKCETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHH
Confidence            888778899999999899888765

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.78  E-value=5.4e-19  Score=138.77  Aligned_cols=108  Identities=31%  Similarity=0.624  Sum_probs=97.3

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ++.+..++.++|...+..++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|+|.++|++++
T Consensus         2 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (122)
T 3aps_A            2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKL   81 (122)
T ss_dssp             CCCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CcchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEE
Confidence            35688999999976777889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCC----CCcchhHHHHHHHHH
Q 015217          109 FVPGKPPVDYQGA----RDVKPIAEFALQQIK  136 (411)
Q Consensus       109 ~~~g~~~~~~~g~----~~~~~l~~~~~~~~~  136 (411)
                      |.+|+.+.++.|.    .+.+.+.+++.+.++
T Consensus        82 ~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           82 YQYERAKKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEGGGTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EeCCCccceeeccccCcCCHHHHHHHHHHHHH
Confidence            9877667777776    789999999988763

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.78  E-value=2.2e-19  Score=140.94  Aligned_cols=104  Identities=11%  Similarity=0.084  Sum_probs=97.4

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGV-ATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .+..+++++|++.+ .++++++|+||++|  |++|+.+.|.++++++.+.++ +.|++||.|++++++.+|||.++||++
T Consensus        18 g~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTli   96 (140)
T 2qgv_A           18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATL   96 (140)
T ss_dssp             TCEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEE
T ss_pred             CCccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            57799999999665 57889999999999  999999999999999999999 999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|++|+.+.+..|..+.+.+.+++.+.+
T Consensus        97 lFk~G~~v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           97 VFTGGNYRGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence            9999999999999999999999998776

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.78  E-value=5.1e-19  Score=134.91  Aligned_cols=102  Identities=29%  Similarity=0.607  Sum_probs=93.7

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.++++++|+ .+..++++++|.||++||++|+.+.|.++++++.+++++.++.+|++++++++++|++.++|+++++.+
T Consensus         2 v~~l~~~~~~-~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   80 (105)
T 1nsw_A            2 TMTLTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHH-HHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceeccHHhHH-HHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence            6789999999 777888999999999999999999999999999998889999999999999999999999999999988


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+.+.++.|..+.+.+.+++.+.
T Consensus        81 G~~~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           81 GRPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             TEEEEEEESCCCHHHHHHHTTTT
T ss_pred             CeEEEEEecCCCHHHHHHHHHHH
Confidence            88778899999988888887643

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=7.8e-19  Score=141.40  Aligned_cols=107  Identities=37%  Similarity=0.708  Sum_probs=97.8

Q ss_pred             CCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEeccccHhHHHhcCCCcc
Q 015217           27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV---ATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        27 ~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      .....+..++.++|+ ..+.++++++|+||++||++|+.+.|.|.++++.+.+.   +.++.+|++++.+++++|+|.++
T Consensus        14 ~~~~~v~~l~~~~~~-~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~   92 (140)
T 2dj1_A           14 KEENGVWVLNDGNFD-NFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY   92 (140)
T ss_dssp             EEETTEEECCTTTHH-HHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSS
T ss_pred             CCCCCCEEcChHhHH-HHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCcc
Confidence            345678999999999 56677899999999999999999999999999998764   99999999999999999999999


Q ss_pred             cEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       104 P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |++++|.+|+ +.+|.|..+.+.|.+|+.+.+
T Consensus        93 Pt~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           93 PTIKILKKGQ-AVDYDGSRTQEEIVAKVREVS  123 (140)
T ss_dssp             SEEEEEETTE-EEECCSCCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCc-EEEcCCCCCHHHHHHHHHHhc
Confidence            9999998888 789999999999999998876

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.78  E-value=6.9e-19  Score=135.91  Aligned_cols=103  Identities=26%  Similarity=0.575  Sum_probs=94.6

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .+++++.++|++.+  ++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|+|.++|++++|.
T Consensus         2 ~v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (112)
T 2voc_A            2 AIVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK   79 (112)
T ss_dssp             CCEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEE
T ss_pred             CeEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence            36789999999554  8899999999999999999999999999999888999999999999999999999999999998


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+.+.++.|..+.+.+.+|+.+.+
T Consensus        80 ~G~~~~~~~G~~~~~~l~~~l~~~~  104 (112)
T 2voc_A           80 DGEVVETSVGFKPKEALQELVNKHL  104 (112)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTTS
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            8887888999999999999987653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.78  E-value=2.1e-18  Score=140.29  Aligned_cols=108  Identities=25%  Similarity=0.544  Sum_probs=100.2

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ....+..++.++|+ ..+.++++++|+||++||++|+.+.|.|+++++.+.+++.++.||++++++++++|+|.++|+++
T Consensus        36 ~~~~v~~l~~~~~~-~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~  114 (148)
T 3p2a_A           36 FDGEVINATAETLD-KLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIM  114 (148)
T ss_dssp             TCCCCEECCTTTHH-HHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccCCceecCHHHHH-HHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEE
Confidence            45678999999999 55588999999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +|++|+.+.++.|..+.+.+.+|+.+.+.
T Consensus       115 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          115 LYRNGKMIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             EEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence            99999888899999999999999998763

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.78  E-value=4.7e-19  Score=137.74  Aligned_cols=104  Identities=20%  Similarity=0.445  Sum_probs=92.0

Q ss_pred             CCCCcEEeCccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           28 SSSPVVQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ........+.++|++ ++.  ++++++|+||++||++|+.+.|.++++++.+++ +.|+.||++++++++++|+|.++|+
T Consensus        10 ~~~~~~~~t~~~f~~-~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt   87 (116)
T 3qfa_C           10 HGSVKQIESKTAFQE-ALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPT   87 (116)
T ss_dssp             --CCBCCCCHHHHHH-HHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             CCcccCCCCHHHHHH-HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccE
Confidence            345566788899995 444  799999999999999999999999999999877 9999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +++|.+|+.+.++.|. +.+.+.+++.+.
T Consensus        88 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           88 FQFFKKGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence            9999888888889998 888999888764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.78  E-value=9.3e-19  Score=141.15  Aligned_cols=110  Identities=25%  Similarity=0.488  Sum_probs=95.1

Q ss_pred             cCCCCCcEEeCccchhHHHhc-----------CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH
Q 015217           26 YGSSSPVVQLTPNNFKSKVLN-----------ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL   94 (411)
Q Consensus        26 ~~~~~~~~~l~~~~f~~~~~~-----------~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~   94 (411)
                      ...+..+..++.++|...+..           ++++++|+||++||++|+.+.|.+.++++.+++++.++.||+++++++
T Consensus        18 ~~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (141)
T 3hxs_A           18 EKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPEL   97 (141)
T ss_dssp             -----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH
T ss_pred             cCCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHH
Confidence            345567899999999966654           578999999999999999999999999999998899999999999999


Q ss_pred             HHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           95 AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        95 ~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++|+|.++|++++|..++.+.++.|..+.+.+.+++.+.+
T Consensus        98 ~~~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l  138 (141)
T 3hxs_A           98 ARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVL  138 (141)
T ss_dssp             HHHTTCCSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTT
T ss_pred             HHHcCCCCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence            99999999999999965555569999999999999998764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.77  E-value=1.5e-18  Score=133.71  Aligned_cols=104  Identities=36%  Similarity=0.810  Sum_probs=94.0

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ++.+..+++++|++.+ . +++++|+||++||++|+.+.|.+.++++.+.   +.+.++.+|++++++++++|+|.++|+
T Consensus         4 ~~~v~~l~~~~~~~~~-~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   81 (111)
T 3uvt_A            4 GSTVLALTENNFDDTI-A-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT   81 (111)
T ss_dssp             -CCSEECCTTTHHHHH-H-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCcceEcChhhHHHHh-c-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccE
Confidence            4568999999999554 4 7899999999999999999999999999875   369999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +++|.+|+.+.++.|..+.+.+.+|+.+.
T Consensus        82 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           82 LLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            99999998888999999999999998764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.77  E-value=1.1e-18  Score=133.03  Aligned_cols=103  Identities=28%  Similarity=0.558  Sum_probs=94.6

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.+++.++|+..+..++++++|.||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|+++++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   81 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeC
Confidence            56889999996666778999999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+.+.++.|..+.+.+.+++.+.
T Consensus        82 g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           82 GERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCHHHHHHHHHhh
Confidence            88778899999999999888764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.77  E-value=4.5e-17  Score=158.00  Aligned_cols=205  Identities=22%  Similarity=0.391  Sum_probs=148.0

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCC--chhHHhhCcccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDS--EKSLMSKFNVQG  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~--~~~l~~~~~v~~  232 (411)
                      ....+..++.++|...+.+.+++++|.||++||++|+.+.|.|.++++.+.+   .+.|+.|||+.  +..+|++|+|.+
T Consensus        10 ~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~   89 (519)
T 3t58_A           10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG   89 (519)
T ss_dssp             TTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred             CCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence            3567999999999998777789999999999999999999999999999987   79999999964  789999999999


Q ss_pred             ccEEEEEcCCC---CCcccccCCCCHHHHHHHHHHHhhhcCC-----CCCceEeCChhHHHHhcCC---cc--EEEe---
Q 015217          233 FPTILVFGADK---DSPIPYEGARTAGAIESFALEQLETNVA-----PPEVTELTSQDVMEEKCGS---AA--ICFY---  296 (411)
Q Consensus       233 ~P~i~~~~~~~---~~~~~y~g~~~~~~i~~fi~~~~~~~~~-----~~~v~~l~~~~~~~~~~~~---~~--~~~~---  296 (411)
                      +|++++|..+.   .....+.|..+.+.|.+++.+.+.....     .|.+..++..+ +..+...   ..  ++|.   
T Consensus        90 ~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~-l~~~l~~~~~~~vallF~~~~  168 (519)
T 3t58_A           90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLND-IDGFFTRNKADYLALVFERED  168 (519)
T ss_dssp             BSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHH-HTTGGGSCCCSEEEEEEECTT
T ss_pred             cCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHH-HHHHhccCCCCeEEEEecCCc
Confidence            99999998632   2345667889999999999998875431     22344454433 3332222   22  2221   


Q ss_pred             HHHHHHHHHHhhcC-ccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCC-ChhHHHHHHHH
Q 015217          297 LEMLLSVAEKFKRG-HYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAF-ELEHIVEFVKE  367 (411)
Q Consensus       297 ~~~~~~~a~~~~~~-~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~-~~~~i~~fi~~  367 (411)
                      ......++..|... .+.+..+.. ....++++||++.  +|++++++..+ +...+.... +.+.+..+|.+
T Consensus       169 s~~~~~~~ldl~~~~~v~v~~v~~-~~~~l~~kfgV~~--~Pslvl~~~nG-k~~~~~v~~~~r~~~~~~l~~  237 (519)
T 3t58_A          169 SYLGREVTLDLSQYHAVAVRRVLN-TESDLVNKFGVTD--FPSCYLLLRNG-SVSRVPVLVESRSFYTSYLRG  237 (519)
T ss_dssp             CCHHHHHHHHTTTCTTEEEEEEET-TCHHHHHHHTCCC--SSEEEEEETTS-CEEECCCSSCSHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhccCCeeEEEecC-chHHHHHHcCCCC--CCeEEEEeCCC-ceeecccccccHHHHHHHHHH
Confidence            13567777777754 356655554 4578999999986  99999998654 332333222 22344455544

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.77  E-value=1.6e-18  Score=141.88  Aligned_cols=106  Identities=27%  Similarity=0.580  Sum_probs=97.5

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ...+.++++++|++.+ .++++++|+||++||++|+.+.|.|+++++.+++++.|+.||++++++++++|+|.++|++++
T Consensus        46 ~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  124 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFIL  124 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred             CCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence            4557889999999544 778999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.+|+.+.++.|..+.+.+.+|+.+.+
T Consensus       125 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  151 (155)
T 2ppt_A          125 FHKGRELARAAGARPASELVGFVRGKL  151 (155)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence            998987888999999999999998876

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.77  E-value=1.2e-18  Score=133.77  Aligned_cols=104  Identities=30%  Similarity=0.562  Sum_probs=96.0

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .+.+++.++|+ .+..++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++.+++++++|++.++|++++|.
T Consensus         2 ~v~~l~~~~~~-~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (109)
T 2yzu_A            2 KPIEVTDQNFD-ETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFK   80 (109)
T ss_dssp             CCEECCTTTHH-HHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             cceEccHhHHH-HHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence            47789999999 67778999999999999999999999999999999988999999999999999999999999999998


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+.+.++.|..+.+.+.+++.+.+
T Consensus        81 ~g~~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           81 DGQPVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             CCcEeeeEeCCCCHHHHHHHHHHHh
Confidence            8887778999999999999987654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=4e-18  Score=135.87  Aligned_cols=124  Identities=48%  Similarity=0.917  Sum_probs=110.2

Q ss_pred             CCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc----CCeEEEEEeCCCchhHHhhCcccc
Q 015217          157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK----GKVKLGHVDCDSEKSLMSKFNVQG  232 (411)
Q Consensus       157 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~----~~~~f~~v~~~~~~~l~~~~~v~~  232 (411)
                      +....+..++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.    +++.|+.||++.+..++++|+|..
T Consensus         4 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             SSCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CCCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCe
Confidence            3567799999999999877778899999999999999999999999999998    789999999999999999999999


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCCh
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQ  281 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~  281 (411)
                      +|++++|+++. ....|.|..+.+.+.+|+.+.+.....++.+.+++..
T Consensus        84 ~Pt~~~~~~g~-~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  131 (133)
T 1x5d_A           84 FPTIKIFQKGE-SPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESGPS  131 (133)
T ss_dssp             SSEEEEEETTE-EEEEECSCCSHHHHHHHHHHHHHHHSCCSSCCCCCGG
T ss_pred             eCeEEEEeCCC-ceEEecCCCCHHHHHHHHHHHhhccCCCccccccCCC
Confidence            99999998754 4678899999999999999999877777777666653

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=2.1e-18  Score=148.86  Aligned_cols=111  Identities=26%  Similarity=0.692  Sum_probs=102.2

Q ss_pred             ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217           25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      .+.....+..+++++|+. ...++++++|.||++||++|+.+.|.|.++++.+++++.++.|||++++++|++|+|.++|
T Consensus        92 ~~~~~~~v~~l~~~~f~~-~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  170 (210)
T 3apq_A           92 IYDDDPEIITLERREFDA-AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYP  170 (210)
T ss_dssp             TTTTCTTSEECCHHHHHH-HHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             ccCCCCceEEecHHHHHH-HHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCC
Confidence            455677889999999994 4577899999999999999999999999999999988999999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      ++++|.+|+.+.++.|..+.+.+.+|+.+.++
T Consensus       171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  202 (210)
T 3apq_A          171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR  202 (210)
T ss_dssp             EEEEECTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCceeEecCCCCHHHHHHHHHHhCc
Confidence            99999989888999999999999999998873

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.76  E-value=2.7e-18  Score=130.47  Aligned_cols=102  Identities=29%  Similarity=0.562  Sum_probs=93.5

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.+++.++|++ ...++++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++++++++|++.++|+++++.+
T Consensus         1 V~~l~~~~~~~-~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A            1 VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             CEECCTTTHHH-HHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CeecCHHHHHH-HHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            46789999994 457789999999999999999999999999999987 9999999999999999999999999999988


Q ss_pred             CCCCcccCCCCCcchhHHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |+.+.++.|..+.+.+.+++.+.+
T Consensus        79 g~~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           79 GEPVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEhhhccCCCCHHHHHHHHHHHh
Confidence            887788999999999999998765

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.76  E-value=5.1e-18  Score=135.86  Aligned_cols=107  Identities=32%  Similarity=0.592  Sum_probs=95.4

Q ss_pred             CCCCcEEeCccchhHHHhc-----------CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHH
Q 015217           28 SSSPVVQLTPNNFKSKVLN-----------ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ   96 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~-----------~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~   96 (411)
                      ....+..+++++|.+.+..           ++++++|+||++||++|+.+.|.+.++++.+++++.++.||+++++++++
T Consensus         7 ~~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~   86 (136)
T 2l5l_A            7 GNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAG   86 (136)
T ss_dssp             CTTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH
T ss_pred             cCCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHH
Confidence            3456889999999965543           56899999999999999999999999999998889999999999999999


Q ss_pred             hcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           97 EYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        97 ~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+|.++|++++| .+|+. .++.|..+.+.+.+++.+.+
T Consensus        87 ~~~v~~~Pt~~~~~~~G~~-~~~~G~~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           87 AFGIRSIPSILFIPMEGKP-EMAQGAMPKASFKKAIDEFL  125 (136)
T ss_dssp             HTTCCSSCEEEEECSSSCC-EEEESCCCHHHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCCcE-EEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999 66665 48899999999999998775

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.76  E-value=9e-19  Score=136.89  Aligned_cols=109  Identities=42%  Similarity=0.770  Sum_probs=97.4

Q ss_pred             cCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCc
Q 015217           26 YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRG  102 (411)
Q Consensus        26 ~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~  102 (411)
                      +.....+..++.++|+ .++.++++++|+||++||++|+.+.|.+.++++.+++   ++.++.+|++++++++++|++.+
T Consensus         3 ~~~~~~v~~l~~~~~~-~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~   81 (120)
T 1mek_A            3 PEEEDHVLVLRKSNFA-EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG   81 (120)
T ss_dssp             CCEETTEEECCTTTHH-HHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCS
T ss_pred             ccCCCCcEEechhhHH-HHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCc
Confidence            4455678999999999 5667789999999999999999999999999998873   68999999999999999999999


Q ss_pred             ccEEEEEeCCCCC--cccCCCCCcchhHHHHHHHH
Q 015217          103 FPTIKVFVPGKPP--VDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       103 ~P~~~~~~~g~~~--~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|++++|.+|+.+  .+|.|..+.+.+.+|+.+.+
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           82 YPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             SSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             ccEEEEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence            9999999988866  88999999999999987653

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.75  E-value=3.9e-18  Score=133.56  Aligned_cols=107  Identities=30%  Similarity=0.542  Sum_probs=96.6

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ....+..++.++|...+..++++++|+||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|+|.++|+++
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   89 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI   89 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            35678899999999767778899999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++++|+.+.++.|..+.+.+.+++.+.
T Consensus        90 ~~~~g~~~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           90 LFKDGQPVKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred             EEECCEEEEEecCCCCHHHHHHHHHHH
Confidence            999888778899999988888887643

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.75  E-value=7.4e-18  Score=138.65  Aligned_cols=107  Identities=16%  Similarity=0.340  Sum_probs=92.3

Q ss_pred             CCCcEEeCccchhHHHhc-CCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhC-----CCeEEEEEeccccHhHH
Q 015217           29 SSPVVQLTPNNFKSKVLN-ANGVVLVEFYA-------PWCGHCQALTPIWEKAATVLK-----GVATVAALDANEHQSLA   95 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~-~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~-----~~i~~~~vd~~~~~~~~   95 (411)
                      +..++.+++++|++.+.. ++.+++|+|||       +||++|+.+.|.|+++++.+.     +++.|++||++++++++
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            567899999999954433 35689999999       499999999999999999998     88999999999999999


Q ss_pred             HhcCCCcccEEEEEeCCCCC------------ccc---CC-CCCcchhHHHHHHHH
Q 015217           96 QEYGIRGFPTIKVFVPGKPP------------VDY---QG-ARDVKPIAEFALQQI  135 (411)
Q Consensus        96 ~~~~i~~~P~~~~~~~g~~~------------~~~---~g-~~~~~~l~~~~~~~~  135 (411)
                      ++|||+++|++++|++|+..            .+|   .| .++++.|.+|+.+.+
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t  152 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKIL  152 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhc
Confidence            99999999999999988642            234   24 788899999998875

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=2.6e-18  Score=137.05  Aligned_cols=108  Identities=33%  Similarity=0.691  Sum_probs=95.0

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ....+..++.++|+..+..++++++|+||++||++|+.+.|.|.++++.++  +++.++.+|++++..++++|+|.++|+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            456789999999995555568999999999999999999999999999998  469999999999999999999999999


Q ss_pred             EEEEeCCCCC--cccC-CCCCcchhHHHHHHHH
Q 015217          106 IKVFVPGKPP--VDYQ-GARDVKPIAEFALQQI  135 (411)
Q Consensus       106 ~~~~~~g~~~--~~~~-g~~~~~~l~~~~~~~~  135 (411)
                      +++|.+|+.+  .+|. |..+.+.|.+|+.+.+
T Consensus        85 ~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             EEEECTTCTTSCEECCSSCCSTTHHHHHHHHHS
T ss_pred             EEEEeCCCcccceEecCCCcCHHHHHHHHHHhc
Confidence            9999887653  3577 5689999999998775

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.75  E-value=7.6e-19  Score=133.99  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=77.4

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217           36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP  115 (411)
Q Consensus        36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~  115 (411)
                      +.++|+ ..+.++++++|+||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|+|.++|++++|++|+.+
T Consensus         7 ~~~~~~-~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A            7 TIEELA-TYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             ---CCS-SSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTEEE
T ss_pred             CHHHHH-HHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE
Confidence            456777 455788999999999999999999999999999984 699999999999999999999999999999999888


Q ss_pred             cccCCCCCcchhHHHHHHH
Q 015217          116 VDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       116 ~~~~g~~~~~~l~~~~~~~  134 (411)
                      .++.|..+.+.+.+++.+.
T Consensus        85 ~~~~g~~~~~~l~~~l~~~  103 (105)
T 4euy_A           85 LRESRFISLENLERTIQLF  103 (105)
T ss_dssp             EEEESSCCHHHHHHHHHTT
T ss_pred             EEEeCCcCHHHHHHHHHHh
Confidence            8999999999999988754

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.75  E-value=1.1e-17  Score=128.86  Aligned_cols=104  Identities=27%  Similarity=0.467  Sum_probs=90.9

Q ss_pred             CCCcEEeCccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcCCCcccEE
Q 015217           29 SSPVVQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~  106 (411)
                      ...+..++.++|.+.+.. ++++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++ .+++++++|++.++|++
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt~   82 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTF   82 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSEE
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            456889999999955543 688999999999999999999999999999875 899999998 78999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +++.+|+.+.++.|.. .+.+.+++.+.
T Consensus        83 ~~~~~G~~~~~~~G~~-~~~l~~~l~~~  109 (111)
T 2pu9_C           83 KILKENSVVGEVTGAK-YDKLLEAIQAA  109 (111)
T ss_dssp             EEESSSSEEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence            9998888777888874 77888887764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.75  E-value=4.4e-18  Score=130.63  Aligned_cols=102  Identities=27%  Similarity=0.493  Sum_probs=90.1

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ......+.++|+ .++.++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++++++++++|+|.++|++++|
T Consensus         7 ~~~~~~~~~~f~-~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   84 (109)
T 3f3q_A            7 MVTQFKTASEFD-SAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLLF   84 (109)
T ss_dssp             CCEECCSHHHHH-HHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cccCCCCHHHHH-HHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            344566778898 6677899999999999999999999999999999865 89999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++|+.+.++.|. +.+.+.+++.+.
T Consensus        85 ~~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           85 KNGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            988878888888 668888887654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.75  E-value=6.4e-19  Score=138.36  Aligned_cols=105  Identities=35%  Similarity=0.704  Sum_probs=90.2

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCCh--------------hhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHH
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCG--------------HCQALTPIWEKAATVLKGVATVAALDANEHQSLA   95 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~--------------~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~   95 (411)
                      +.+.++++++|+..+..++++++|+||++||+              +|+.+.|.++++++.+++++.++.+|++++++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~   82 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA   82 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence            46889999999966778899999999999999              9999999999999999888999999999999999


Q ss_pred             HhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217           96 QEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus        96 ~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++|+|.++|++++|.+|+.+.++.|..+.+.+.+++.+.
T Consensus        83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHH
Confidence            999999999999998888788899999999998888643

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.75  E-value=3.8e-18  Score=133.66  Aligned_cols=105  Identities=38%  Similarity=0.782  Sum_probs=92.6

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-----CeEEEEEeccccHhHHHhcCCCc
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-----VATVAALDANEHQSLAQEYGIRG  102 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~i~~~~vd~~~~~~~~~~~~i~~  102 (411)
                      ....+..+++++|+..+..++++++|+||++||++|+.+.|.|.++++.+++     ++.++.+||++++ +++  +|.+
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            4567899999999955457889999999999999999999999999999987     7999999999776 665  9999


Q ss_pred             ccEEEEEeCCCC--CcccCCCCCcchhHHHHHHHH
Q 015217          103 FPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       103 ~P~~~~~~~g~~--~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|++++|.+|+.  ..+|.|..+.+.+.+|+.+.+
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence            999999988755  788999999999999998653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.74  E-value=6.8e-18  Score=130.23  Aligned_cols=104  Identities=21%  Similarity=0.505  Sum_probs=91.3

Q ss_pred             CcEEe-CccchhHHHhc-C--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           31 PVVQL-TPNNFKSKVLN-A--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        31 ~~~~l-~~~~f~~~~~~-~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      .+..+ +.++|++.+.. +  +++++|.||++||++|+.+.|.+.++++.+++++.++.+|++.+++++++|+|.++|++
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   82 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence            46677 45788854432 3  89999999999999999999999999999987899999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++.+|+.+.++.|. +.+.+.+++.+.+
T Consensus        83 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           83 HVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence            999988877788898 8888988888765

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=6.9e-18  Score=133.21  Aligned_cols=104  Identities=34%  Similarity=0.574  Sum_probs=92.7

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ....+..+++++|+ .++.+  .++|+||++||++|+.+.|.+.++++.+++ ++.++.||++++++++++|+|.++|++
T Consensus         5 ~~~~v~~l~~~~f~-~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            5 SSGNVRVITDENWR-ELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCCSEEECCTTTHH-HHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEecHHHHH-HHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            34678899999999 44432  499999999999999999999999999886 799999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|.+|+ +.++.|..+.+.+.+|+.+.+
T Consensus        82 ~~~~~G~-~~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           82 YHCKDGE-FRRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             EEEETTE-EEECCSCCCHHHHHHHHHTCG
T ss_pred             EEEeCCe-EEEeecCCCHHHHHHHHHHHh
Confidence            9998887 689999999999999988654

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=3e-17  Score=130.25  Aligned_cols=112  Identities=54%  Similarity=0.993  Sum_probs=102.2

Q ss_pred             CCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEE
Q 015217          157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       157 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      +....+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.||++.+..++++|+|..+|++
T Consensus        14 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (130)
T 2dml_A           14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTI   93 (130)
T ss_dssp             CTTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CCCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEE
Confidence            34567999999999997777788999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          237 LVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      ++|++++.....|.|..+.+.+.+|+.+.+..
T Consensus        94 ~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~  125 (130)
T 2dml_A           94 KIFGANKNKPEDYQGGRTGEAIVDAALSALRS  125 (130)
T ss_dssp             EEESSCTTSCEECCSCCSHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCeEEEeecCCCHHHHHHHHHHHHhc
Confidence            99988776578899999999999999988754

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.74  E-value=1.4e-17  Score=131.03  Aligned_cols=104  Identities=20%  Similarity=0.350  Sum_probs=92.9

Q ss_pred             CCCcEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           29 SSPVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        29 ~~~~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ..-+.++++ ++|++ ++.++++++|.||++||++|+.+.|.+.++++.++ ++.|+.||++++++++++|+|.++|+++
T Consensus        18 ~~mv~~l~~~~~f~~-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   95 (125)
T 1r26_A           18 YPSVVDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFI   95 (125)
T ss_dssp             CSCCEEECCHHHHHH-HHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccceEECCCHHHHHH-HHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            334889999 99994 55889999999999999999999999999999985 5999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|.+|+.+.++.| .+.+.+.+++.+.+
T Consensus        96 i~~~G~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           96 IARSGKMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             EEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             EEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence            9998887778888 68888888888765

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.74  E-value=7e-18  Score=146.84  Aligned_cols=110  Identities=35%  Similarity=0.672  Sum_probs=101.5

Q ss_pred             cCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           26 YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        26 ~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ......+..+++++|++.++.++++++|+||++||++|+.+.|.|.++++.+++++.++.||+++++.++++|+|.++|+
T Consensus         8 ~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   87 (222)
T 3dxb_A            8 HPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT   87 (222)
T ss_dssp             -CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSE
T ss_pred             CCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCE
Confidence            34567788999999997678889999999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++++++|+.+.++.|..+.+.+.+++.+.+
T Consensus        88 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           88 LLLFKNGEVAATKVGALSKGQLKEFLDANL  117 (222)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence            999999988889999999999999998775

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.74  E-value=8.6e-18  Score=136.45  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=93.3

Q ss_pred             eCccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCC
Q 015217           35 LTPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        35 l~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      .+.++|+..+. .++++++|+||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++|+++++.+|+
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~   88 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQ   88 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTE
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECCe
Confidence            45678885555 67899999999999999999999999999999888999999999999999999999999999999998


Q ss_pred             CC---------cccCC-CCCcchhHHHHHHHHHHH
Q 015217          114 PP---------VDYQG-ARDVKPIAEFALQQIKAL  138 (411)
Q Consensus       114 ~~---------~~~~g-~~~~~~l~~~~~~~~~~~  138 (411)
                      .+         .++.| ..+.+.+.+++.+.++..
T Consensus        89 ~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~  123 (149)
T 3gix_A           89 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA  123 (149)
T ss_dssp             EEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence            77         78889 889999999998877554

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.74  E-value=1.3e-17  Score=127.54  Aligned_cols=102  Identities=22%  Similarity=0.345  Sum_probs=86.8

Q ss_pred             cEEe-CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           32 VVQL-TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l-~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +..+ +.++|++.+. .++++++|+||++||++|+.+.|.++++++.+ +++.++.+|++++++++++|++.++|++++|
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence            4555 5578885444 47899999999999999999999999999998 4699999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      .+|+.+.++.|... +.+.+++.+.+
T Consensus        82 ~~G~~~~~~~G~~~-~~l~~~l~~~l  106 (107)
T 1gh2_A           82 RNKVRIDQYQGADA-VGLEEKIKQHL  106 (107)
T ss_dssp             ETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred             ECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence            99987778888544 55888877653

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.74  E-value=1.2e-17  Score=131.00  Aligned_cols=104  Identities=18%  Similarity=0.416  Sum_probs=93.1

Q ss_pred             CCcEEeCccchhHHHhc---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           30 SPVVQLTPNNFKSKVLN---ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ..+..++.++|+..+..   ++++++|+||++||++|+.+.|.|.++++.+++ +.++.+|++++++++++|+|.++|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTF   91 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEE
Confidence            44667788999966654   689999999999999999999999999999887 99999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++.+|+.+.++.|.. .+.+.+++.+.+
T Consensus        92 ~~~~~G~~~~~~~G~~-~~~l~~~l~~~l  119 (122)
T 2vlu_A           92 LFMKEGDVKDRVVGAI-KEELTAKVGLHA  119 (122)
T ss_dssp             EEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence            9999888778899988 888999988765

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.74  E-value=2.4e-17  Score=126.83  Aligned_cols=109  Identities=23%  Similarity=0.410  Sum_probs=98.8

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ....+..++.++|.+.+...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|+|.++|+++
T Consensus         2 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            2 NAMSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCCCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CCCcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            34678999999999987677899999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|. ...++.|..+.+.+.+|+.+.+.
T Consensus        82 ~~~~g~-~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           82 YFKDGE-YKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEETTE-EEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEECCE-EEEEEeccCCHHHHHHHHHHHhc
Confidence            997654 35678999999999999988753

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.73  E-value=9.7e-18  Score=127.94  Aligned_cols=101  Identities=23%  Similarity=0.528  Sum_probs=89.1

Q ss_pred             cEEeCc-cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           32 VVQLTP-NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l~~-~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +.++++ ++|+..+.. ++++++|.||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|+++++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEE
Confidence            456777 788854443 789999999999999999999999999999987899999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      .+|+.+.++.| .+.+.+.+++.+
T Consensus        82 ~~G~~~~~~~g-~~~~~l~~~i~~  104 (106)
T 1xwb_A           82 KNGVKVEEFAG-ANAKRLEDVIKA  104 (106)
T ss_dssp             ETTEEEEEEES-CCHHHHHHHHHH
T ss_pred             cCCcEEEEEcC-CCHHHHHHHHHH
Confidence            98887788888 677888887765

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.73  E-value=5.2e-18  Score=134.30  Aligned_cols=98  Identities=17%  Similarity=0.297  Sum_probs=88.0

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++.+.+. ....++++++|+||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++|+++++++|+.
T Consensus        30 ~~~~~~~-~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~  108 (128)
T 3ul3_B           30 NGSNIIN-GVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTM  108 (128)
T ss_dssp             CCCSSSS-BTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CCccHHH-HHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEE
Confidence            3434444 566789999999999999999999999999999998889999999999999999999999999999998888


Q ss_pred             CcccCCCCCcchhHHHHHH
Q 015217          115 PVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       115 ~~~~~g~~~~~~l~~~~~~  133 (411)
                      +.++.|..+.+.+.+++.+
T Consensus       109 ~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          109 LARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEESSCCCHHHHHHHHTT
T ss_pred             EEEecCCCCHHHHHHHHHh
Confidence            8899999999999988753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.6e-17  Score=128.12  Aligned_cols=104  Identities=16%  Similarity=0.347  Sum_probs=86.5

Q ss_pred             cEEeCc-cchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           32 VVQLTP-NNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        32 ~~~l~~-~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      +..+++ ++|++.+.  .++++++|.||++||++|+.+.|.+.++++.+. +++.++.+|++++++++++|+|.++|+++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   81 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI   81 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence            567887 88984443  238899999999999999999999999999853 46999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +|.+|+.+.++.|.. .+.+.+++.+.+.
T Consensus        82 ~~~~G~~~~~~~G~~-~~~l~~~l~~~~~  109 (112)
T 3d6i_A           82 IIHKGTILKELSGAD-PKEYVSLLEDCKN  109 (112)
T ss_dssp             EEETTEEEEEECSCC-HHHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCC-HHHHHHHHHHHHh
Confidence            999888778888874 4568888877653

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.73  E-value=1.2e-17  Score=136.49  Aligned_cols=126  Identities=18%  Similarity=0.333  Sum_probs=94.7

Q ss_pred             CCCcEEeC-ccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQLT-PNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l~-~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ...+..++ .++|+ .++.+  +++++|+||++||++|+.+.|.|.++++.++ ++.|+.||++++++++++|+|.++|+
T Consensus        11 ~~~v~~l~~~~~~~-~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt   88 (153)
T 2wz9_A           11 VAAVEEVGSAGQFE-ELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPT   88 (153)
T ss_dssp             -CCSEEECSHHHHH-HHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             cCCeEEcCCHHHHH-HHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCE
Confidence            45678887 47888 44444  8999999999999999999999999999874 69999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDEL  173 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  173 (411)
                      +++|.+|+.+.++.|. +.+.+.+++.+.+..        .        ....+..+..++..+|.+.
T Consensus        89 ~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l~~--------~--------~~~~~~~~~~l~~~~f~~~  139 (153)
T 2wz9_A           89 FLFFKNSQKIDRLDGA-HAPELTKKVQRHASS--------G--------SFLPSAKVKVDTDPNSSSV  139 (153)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHSCT--------T--------SSCSCCCCCCC--------
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHHHhcc--------c--------cCCCccccccCCCCChhhH
Confidence            9999988777778884 667788888766411        0        1123455677788887774

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-18  Score=137.79  Aligned_cols=107  Identities=17%  Similarity=0.354  Sum_probs=95.0

Q ss_pred             CCCCcEEeCccchhHHHhcCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCC----
Q 015217           28 SSSPVVQLTPNNFKSKVLNAN-GVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIR----  101 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~----  101 (411)
                      .+..+..++.++|++.+.... ++++|+||++||++|+.+.|.|+++++.+++ ++.++.||++++++++++|+|.    
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPL   84 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSS
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCC
Confidence            356688999999996654433 4999999999999999999999999999986 7999999999999999999999    


Q ss_pred             --cccEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          102 --GFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       102 --~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                        ++|++++|.+|+.+.++.|..+.+.+.+|+.+.
T Consensus        85 ~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           85 TKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             SSCSSEEEEESSSSEEEEESCBCSSSCBCCCCCCH
T ss_pred             cCCCCEEEEEECCEEEEEecCcCchHHHHHHHhcc
Confidence              999999999898888899999999988888543

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.73  E-value=6.8e-18  Score=130.27  Aligned_cols=104  Identities=21%  Similarity=0.505  Sum_probs=92.0

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      .++....++.++|+ .++.++++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++++++++|+|.++|+++
T Consensus         7 ~~~~~~~~~~~~f~-~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            7 HHMVKIVTSQAEFD-SIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             --CCEEECSHHHHH-HHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ceeEEEECCHHHHH-HHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            34567789999999 5567899999999999999999999999999999874 999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++.+|+.+.++.|. +.+.+.+++.+.
T Consensus        85 ~~~~G~~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           85 VYKNGSSVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence            99988877788998 888888888653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.72  E-value=1.3e-17  Score=131.16  Aligned_cols=105  Identities=28%  Similarity=0.493  Sum_probs=91.5

Q ss_pred             CCCCcEEeCccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcCCCcccE
Q 015217           28 SSSPVVQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPT  105 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~  105 (411)
                      ....+..++.++|.+.+.. ++++++|.||++||++|+.+.|.++++++.+++ +.++.+|++ ++++++++|+|.++|+
T Consensus        16 ~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~Pt   94 (124)
T 1faa_A           16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   94 (124)
T ss_dssp             TTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             cCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCeeeE
Confidence            4567889999999955543 688999999999999999999999999999875 899999998 6899999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++++++|+.+.++.|.. .+.+.+++.+.
T Consensus        95 ~~~~~~G~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           95 FKILKENSVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             EEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence            99999998777888875 77788877654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.72  E-value=1.5e-17  Score=133.87  Aligned_cols=105  Identities=33%  Similarity=0.612  Sum_probs=82.8

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..+.+++.++|...+...++ ++|+||++||++|+.+.|.|+++++.+++++.|+.||++.++.++++|++.++|++++|
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  111 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF  111 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEE
Confidence            56788999999955555555 99999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      .+|+.+.++.|..+.+.+.+|+.+.+
T Consensus       112 ~~G~~~~~~~G~~~~~~l~~~i~~~l  137 (140)
T 1v98_A          112 RRGAPVATWVGASPRRVLEERLRPYL  137 (140)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            98887788999999999999998775

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.72  E-value=3.9e-17  Score=123.88  Aligned_cols=101  Identities=19%  Similarity=0.450  Sum_probs=86.1

Q ss_pred             cEEeC-ccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIELN-SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~-~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      |.+++ .++|.+.+.+. +++++|.||++||++|+.+.|.|.++++.+. ++.|+.||++.+++++++|+|.++||+++|
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~   80 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLFM   80 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEEE
Confidence            34554 46788877554 6799999999999999999999999999886 589999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++|.. ..++.| .+.+.|.+||.+|
T Consensus        81 ~~G~~-v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           81 KNGQK-LDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             ETTEE-EEEEES-CCHHHHHHHHHHH
T ss_pred             ECCEE-EEEEeC-cCHHHHHHHHHhc
Confidence            87653 566777 5889999999875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.72  E-value=2.3e-17  Score=125.59  Aligned_cols=96  Identities=22%  Similarity=0.545  Sum_probs=86.0

Q ss_pred             CccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCC
Q 015217           36 TPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        36 ~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      +.++|+ ..+.  ++++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++++++++|++.++|++++|.+|+
T Consensus         7 ~~~~~~-~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~   84 (105)
T 3m9j_A            7 SKTAFQ-EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQ   84 (105)
T ss_dssp             SHHHHH-HHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEETTE
T ss_pred             CHHHHH-HHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCe
Confidence            446677 4444  689999999999999999999999999999876 999999999999999999999999999999898


Q ss_pred             CCcccCCCCCcchhHHHHHHH
Q 015217          114 PPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       114 ~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      .+.++.|. +.+.+.+++.+.
T Consensus        85 ~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           85 KVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEEeCC-CHHHHHHHHHHh
Confidence            88889998 888999888764

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.72  E-value=1.3e-17  Score=128.98  Aligned_cols=101  Identities=21%  Similarity=0.387  Sum_probs=87.6

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..+..+++.++-+.++.++++++|.||++||++|+.+.|.+.++++.+++ +.++.+|++++++++++|+|.++|+++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   90 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLG   90 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEE
Confidence            44556666444436777899999999999999999999999999999877 99999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      .+|+.+.++.|.. .+.+.+++.
T Consensus        91 ~~G~~~~~~~G~~-~~~l~~~l~  112 (114)
T 2oe3_A           91 KDGQLIGKIIGAN-PTALEKGIK  112 (114)
T ss_dssp             ETTEEEEEEESSC-HHHHHHHHH
T ss_pred             eCCeEEEEEeCCC-HHHHHHHHH
Confidence            9888777888988 777877775

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.72  E-value=9.9e-17  Score=131.95  Aligned_cols=111  Identities=16%  Similarity=0.266  Sum_probs=96.3

Q ss_pred             CCCCcEEeCccchHHHHhcC-CCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhc-----CCeEEEEEeCCCchhH
Q 015217          158 DSNESIELNSSNFDELVLKS-KDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLK-----GKVKLGHVDCDSEKSL  224 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~-------~~c~~c~~~~~~~~~~a~~~~-----~~~~f~~v~~~~~~~l  224 (411)
                      ....++.+++.+|.+.+... +.+++|.|++       .||++|+.+.|.|+++|+.+.     +++.|+.||++.++.+
T Consensus        16 ~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           16 DDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQL   95 (178)
T ss_dssp             CTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHH
T ss_pred             ccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHH
Confidence            35679999999999976443 4589999999       499999999999999999998     8899999999999999


Q ss_pred             HhhCccccccEEEEEcCCCCCc-----------ccc---cC-CCCHHHHHHHHHHHhhh
Q 015217          225 MSKFNVQGFPTILVFGADKDSP-----------IPY---EG-ARTAGAIESFALEQLET  268 (411)
Q Consensus       225 ~~~~~v~~~P~i~~~~~~~~~~-----------~~y---~g-~~~~~~i~~fi~~~~~~  268 (411)
                      +++|||+++|++++|++|....           ..|   .| ..+++.|.+||.+++..
T Consensus        96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence            9999999999999998876433           445   35 78999999999998863

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.71  E-value=2.1e-17  Score=149.83  Aligned_cols=106  Identities=29%  Similarity=0.521  Sum_probs=97.0

Q ss_pred             CCCcEEeCccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           29 SSPVVQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ...+.+++.++|++ ++.  ++++++|+||++||++|+.+.|.++++++.+++++.|+.|||+++++++++|+|.++||+
T Consensus         6 ~~~v~~~~~~~f~~-~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            6 VENIVNINESNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             CTTEEECCTTTHHH-HHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CCccEECCHHHHHH-HHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            45688999999995 544  388999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|.+|+.+.++.|..+.+.+.+++.+.+
T Consensus        85 ~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            99999988888999999999999998764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.71  E-value=2.6e-17  Score=128.02  Aligned_cols=100  Identities=22%  Similarity=0.531  Sum_probs=88.1

Q ss_pred             cEEeCc-cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           32 VVQLTP-NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l~~-~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +.++++ ++|...+.. ++++++|.||++||++|+.+.|.+.++++.+  ++.++.+|++++++++++|+|.++|+++++
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIAI   92 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEEE
Confidence            778888 888854433 7899999999999999999999999999887  689999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++|+.+.++.| .+.+.+.+++.+.
T Consensus        93 ~~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           93 KNGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             ETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             eCCcEEEEEeC-CCHHHHHHHHHHh
Confidence            98887778888 5777888887654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.71  E-value=9.3e-17  Score=122.92  Aligned_cols=106  Identities=30%  Similarity=0.630  Sum_probs=95.5

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++.++|++++|
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            45889999999987777788999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ...++.|..+.+.+.+|+.+.+
T Consensus        82 ~~G~-~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           82 KNGE-VAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCE-EEEEEecCCCHHHHHHHHHHhh
Confidence            6544 3567889999999999998764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.71  E-value=5.5e-17  Score=127.49  Aligned_cols=105  Identities=22%  Similarity=0.452  Sum_probs=90.5

Q ss_pred             CCCCcEEe-CccchhHHHhc---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcc
Q 015217           28 SSSPVVQL-TPNNFKSKVLN---ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        28 ~~~~~~~l-~~~~f~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      ....+..+ +.++|+..+..   ++++++|+||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|+|.++
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~   92 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAM   92 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSS
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCcc
Confidence            44557777 56788855543   58999999999999999999999999999987 699999999999999999999999


Q ss_pred             cEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       104 P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+++++.+|+.+.++.| .+.+.+.+++.+.
T Consensus        93 Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           93 PTFMFLKEGKILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             SEEEEEETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeC-CCHHHHHHHHHHh
Confidence            99999998887778888 4778888887764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.71  E-value=4.4e-17  Score=123.74  Aligned_cols=100  Identities=21%  Similarity=0.479  Sum_probs=87.1

Q ss_pred             EEeCc-cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           33 VQLTP-NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        33 ~~l~~-~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      ..+++ ++|++.+.. ++++++|.||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|++.++|+++++.
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK   80 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence            45666 788854433 78899999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|+.+.++.| .+.+.+.+++.+.
T Consensus        81 ~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           81 DGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             CCcEEEEEeC-CCHHHHHHHHHhh
Confidence            8887778888 5888888888654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.70  E-value=4.2e-17  Score=131.26  Aligned_cols=102  Identities=16%  Similarity=0.241  Sum_probs=86.0

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           36 TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        36 ~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      +.++|+..+.. ++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++|++++|.+|+.
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcE
Confidence            45778855554 68999999999999999999999999999998889999999999999999999999999999998876


Q ss_pred             Cc---------ccCCCCC-cchhHHHHHHHHHH
Q 015217          115 PV---------DYQGARD-VKPIAEFALQQIKA  137 (411)
Q Consensus       115 ~~---------~~~g~~~-~~~l~~~~~~~~~~  137 (411)
                      +.         +..|..+ .+.+.+++.+.++.
T Consensus        90 v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           90 IMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence            43         3455554 67788888776643

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.70  E-value=5.6e-17  Score=126.79  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCC--hhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWC--GHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c--~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .....+++.+|.+.+....++++|.||++||  ++|+.+.|++.++++.|.+++.|+.||.+.++.++.+|||.++||++
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTli   94 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLA   94 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            4577999999999876666699999999999  99999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|.. ..+..|..+...+.+++.+++.
T Consensus        95 lFkdG~~-v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           95 VVQPERT-LGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             EEECCEE-EEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEECCEE-EEEEeCCCCHHHHHHHHHHHhc
Confidence            9998764 6777899999999999988763

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.70  E-value=5.8e-17  Score=126.44  Aligned_cols=111  Identities=26%  Similarity=0.499  Sum_probs=99.0

Q ss_pred             CCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217          155 SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       155 ~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      +.+.++.+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.+..++++|+|..+|
T Consensus         8 ~~~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~P   87 (119)
T 1w4v_A            8 HHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVP   87 (119)
T ss_dssp             --CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             ccCCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCccc
Confidence            45678999999999999987777889999999999999999999999999999888999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++++|++|. ...++.|..+.+.+.+|+.+.+
T Consensus        88 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           88 TVLAMKNGD-VVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCc-EEEEEcCCCCHHHHHHHHHHHh
Confidence            999996544 3567889889999999998764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.70  E-value=1.1e-16  Score=123.48  Aligned_cols=105  Identities=22%  Similarity=0.464  Sum_probs=91.1

Q ss_pred             CCCcEEe-CccchhHHHhc---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217           29 SSPVVQL-TPNNFKSKVLN---ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        29 ~~~~~~l-~~~~f~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      +..+..+ +.++|++.+..   ++++++|.||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|++.++|
T Consensus         3 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~P   81 (113)
T 1ti3_A            3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMP   81 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTT
T ss_pred             CCceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCccc
Confidence            3456777 55788855543   58899999999999999999999999999986 6999999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++++.+|+.+.++.| .+.+.+.+++.+.+
T Consensus        82 t~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           82 TFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence            9999998887778888 68889999998765

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.70  E-value=2.9e-17  Score=127.97  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=86.4

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe----ccccHhHHHhcCCCcccE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD----ANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd----~~~~~~~~~~~~i~~~P~  105 (411)
                      ..+..++.++|. ..+.++++++|+||++||++|+.+.|.+.++++.++..+.++.++    ++..+.++++|+|.++|+
T Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt   90 (118)
T 1zma_A           12 KDLEVTTVVRAQ-EALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   90 (118)
T ss_dssp             TTSEECCHHHHH-HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             hhhhcCCHHHHH-HHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCe
Confidence            457788999999 455678899999999999999999999999999887667666333    234468999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      +++|.+|+.+.++.|..+.+.|.+|+.
T Consensus        91 ~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           91 FVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            999998887889999999998888874

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.69  E-value=1.3e-16  Score=122.98  Aligned_cols=103  Identities=23%  Similarity=0.484  Sum_probs=93.7

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..++.++|.+.+  .+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||++.+..++++|+|.++|++++|++
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKD   80 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEET
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence            6789999999976  77899999999999999999999999999998889999999999999999999999999999965


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      | +...++.|..+.+.+.+|+.+++.
T Consensus        81 G-~~~~~~~G~~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           81 G-EVVETSVGFKPKEALQELVNKHLL  105 (112)
T ss_dssp             T-EEEEEEESCCCHHHHHHHHHTTSC
T ss_pred             C-EEEEEEeCCCCHHHHHHHHHHHHH
Confidence            4 346678999999999999988764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.69  E-value=3e-17  Score=131.56  Aligned_cols=103  Identities=12%  Similarity=0.139  Sum_probs=80.6

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeE--EEEEeccccHhHHHhcCCCcccEE
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVAT--VAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~i~--~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      .+..+++++|+ ..+.+++.++|+|+++|  |++|+.+.|.|+++++.+ +++.  +++||++++++++++|+|.++|++
T Consensus        18 ~~~~l~~~~f~-~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~   95 (142)
T 2es7_A           18 GWQPVEASTVD-DWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPAT   95 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             cCcccccccHH-HHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence            57899999999 45566677889999887  999999999999999999 7788  999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|++|+.+.++.|..+.+.+.+++.+.+
T Consensus        96 ~~fk~G~~v~~~~G~~~~~~l~~~i~~~l  124 (142)
T 2es7_A           96 LVFTDGKLRGALSGIHPWAELLTLMRSIV  124 (142)
T ss_dssp             EEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999988889999999999999998876

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.69  E-value=1.8e-16  Score=121.08  Aligned_cols=105  Identities=26%  Similarity=0.539  Sum_probs=94.5

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +.+..++.++|.+.+...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++..+|++++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            45889999999987767788999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++|. ...++.|..+.+.+.+|+.+.
T Consensus        82 ~~G~-~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           82 RDGK-VIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHT
T ss_pred             eCCE-EEEEecCCCCHHHHHHHHHhc
Confidence            6544 356788999999999998764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.69  E-value=5e-17  Score=124.91  Aligned_cols=100  Identities=16%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +..++.++|+ .+ .++++++|.||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|++.++|++++|.+
T Consensus         5 ~~~~~~~~f~-~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   81 (110)
T 2l6c_A            5 RDITTEAGMA-HF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRD   81 (110)
T ss_dssp             SBCGGGCSHH-HH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred             eecCCHHHHH-HH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence            4567788893 44 567999999999999999999999999998876 68999999999999999999999999999998


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+.+.++.|..+.+.|.+++.+.
T Consensus        82 G~~v~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           82 GKVAKVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             SSEEEEEESCCCHHHHHHHHHTC
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHH
Confidence            98888999999999999888754

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.69  E-value=6.3e-17  Score=127.65  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=89.0

Q ss_pred             cEEeCccchh----HHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe--ccccHhHHHhcCCCcccE
Q 015217           32 VVQLTPNNFK----SKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD--ANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        32 ~~~l~~~~f~----~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd--~~~~~~~~~~~~i~~~P~  105 (411)
                      +..++.++++    .....++++++|+||++||++|+.+.|.+.++++.+++++.++.||  ++.+.+++++|+|.++|+
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt   85 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPT   85 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSE
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeE
Confidence            3344444444    1334578899999999999999999999999999998889999999  999999999999999999


Q ss_pred             EEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          106 IKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       106 ~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++++. +|+.+.++.|..+.+.+.+++.+.+
T Consensus        86 ~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           86 TVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             EEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence            99998 7777778999999999999988764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.69  E-value=1.7e-16  Score=127.70  Aligned_cols=109  Identities=27%  Similarity=0.501  Sum_probs=96.3

Q ss_pred             CCCCCcEEeCccchHHHHhc-----------CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH
Q 015217          157 SDSNESIELNSSNFDELVLK-----------SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM  225 (411)
Q Consensus       157 ~~~~~v~~l~~~~~~~~~~~-----------~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~  225 (411)
                      .....+..++..+|...+..           .+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||++.+..++
T Consensus        19 ~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (141)
T 3hxs_A           19 KPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELA   98 (141)
T ss_dssp             ----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH
T ss_pred             CCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHH
Confidence            45678999999999998765           4679999999999999999999999999999989999999999999999


Q ss_pred             hhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       226 ~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|+|..+|++++|..++. ...+.|..+.+.|.+|+.+.+
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~-~~~~~G~~~~~~l~~~l~~~l  138 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGE-PQVNMGALSKEQLKGYIDKVL  138 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSC-CEEEESCCCHHHHHHHHHHTT
T ss_pred             HHcCCCCcCEEEEEeCCCC-EEEEeCCCCHHHHHHHHHHHH
Confidence            9999999999999966555 458999999999999998875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.69  E-value=1.2e-16  Score=126.75  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=90.6

Q ss_pred             cEEeCc-cchHHHHh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIELNS-SNFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~~-~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..+++ .+|.+.+. +.+++++|.||++||++|+.+.|.+.++|+++.+++.|+.||.++.++++++|+|..+||+++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            566665 67877766 3678999999999999999999999999999998999999999999999999999999999999


Q ss_pred             cCCCCCc-c-------cccCCCC-HHHHHHHHHHHhh
Q 015217          240 GADKDSP-I-------PYEGART-AGAIESFALEQLE  267 (411)
Q Consensus       240 ~~~~~~~-~-------~y~g~~~-~~~i~~fi~~~~~  267 (411)
                      ++|.... -       +..|... .+.|.++|..++.
T Consensus       103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A          103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence            8776311 1       5778776 8889998877654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.69  E-value=1.2e-16  Score=128.48  Aligned_cols=109  Identities=21%  Similarity=0.378  Sum_probs=99.5

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ....+..++..+|.+.+...+++++|.||++||++|+.+.+.|.++++.+.+++.|+.||++.++.++++|+|.++|+++
T Consensus         4 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   83 (140)
T 3hz4_A            4 NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFK   83 (140)
T ss_dssp             CTTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEE
T ss_pred             CCcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEE
Confidence            45679999999999777788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|. ...++.|..+.+.+.+|+.+.+.
T Consensus        84 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           84 FFCHGR-PVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEETTE-EEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEeCCc-EEEEEcCCCCHHHHHHHHHHHhc
Confidence            997654 35688999999999999998874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.69  E-value=1.8e-16  Score=120.83  Aligned_cols=103  Identities=24%  Similarity=0.462  Sum_probs=93.8

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+..++.++|.+.+  .+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++.++|++++|
T Consensus         3 ~~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 3die_A            3 MAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF   80 (106)
T ss_dssp             CCCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             cceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEE
Confidence            468899999999976  788999999999999999999999999999998999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++|. ...++.|..+.+++.+++.++
T Consensus        81 ~~G~-~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           81 KDGQ-PVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHTT
T ss_pred             eCCe-EEEEEeCCCCHHHHHHHHHHh
Confidence            7554 366789999999999998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.69  E-value=4.5e-17  Score=127.50  Aligned_cols=105  Identities=30%  Similarity=0.589  Sum_probs=91.8

Q ss_pred             CCCCcEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccHhHHHhcCCCcccE
Q 015217           28 SSSPVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        28 ~~~~~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ....+..++. ++|+ .++.++++++|.||++||++|+.+.|.+.++++.+++. +.++.+|++++++++++|++.++|+
T Consensus        13 ~~~~~~~i~~~~~f~-~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt   91 (121)
T 2j23_A           13 PRGSVQVISSYDQFK-QVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPT   91 (121)
T ss_dssp             CCCCEEECCSHHHHH-HHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCcceEEcCCHHHHH-HHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccE
Confidence            3445566665 7888 55588899999999999999999999999999988765 9999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +++|.+|+.+.++.|. +.+.+.+++.+.
T Consensus        92 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           92 FVFFKNGQKIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence            9999988877888898 888888888765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.52  E-value=1.9e-18  Score=131.82  Aligned_cols=103  Identities=34%  Similarity=0.666  Sum_probs=94.0

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.+++.++|.+.+..++++++|.||++||++|+.+.|.+.++++.+++++.++.+|++++++++++|++.++|+++++.+
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN   82 (106)
Confidence            56788899986666788999999999999999999999999999998889999999999999999999999999999988


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+.+.++.|..+.+.+.+++.+.
T Consensus        83 g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           83 GQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            88788899999999998888754

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.69  E-value=2.3e-16  Score=122.11  Aligned_cols=108  Identities=26%  Similarity=0.503  Sum_probs=97.0

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      +..+..++.++|.+.+...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++..+|++++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~   85 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL   85 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence            45689999999998776778899999999999999999999999999999889999999999999999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          239 FGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      |++|. ....+.|..+.+.+.+|+.+.+.
T Consensus        86 ~~~G~-~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           86 VKGEQ-ILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EcCCE-EEEEecCCCCHHHHHHHHHHHhc
Confidence            96543 35678899999999999988764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.68  E-value=9.1e-17  Score=124.16  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             CcEEeCccchhHHHhcCCC--eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           31 PVVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      .+.+++.++|.+.+...++  +++|+||++||++|+.+.|.++++++.++ ++.|++||+++.   +++|+|.++||+++
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~~~   79 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTIFV   79 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEEEE
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEEEE
Confidence            4678899999966665554  99999999999999999999999999986 489999999975   58999999999999


Q ss_pred             EeCCCCCcccCCCC
Q 015217          109 FVPGKPPVDYQGAR  122 (411)
Q Consensus       109 ~~~g~~~~~~~g~~  122 (411)
                      |++|+.+.++.|..
T Consensus        80 fk~G~~v~~~~G~~   93 (118)
T 3evi_A           80 YKNGQIEAKFIGII   93 (118)
T ss_dssp             EETTEEEEEEESTT
T ss_pred             EECCEEEEEEeChh
Confidence            99998877777754

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.68  E-value=2.8e-17  Score=131.28  Aligned_cols=102  Identities=19%  Similarity=0.294  Sum_probs=91.9

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec---------cccHhHHHhcC
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA---------NEHQSLAQEYG   99 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~---------~~~~~~~~~~~   99 (411)
                      +..+..++.++|++. +.+  +++|+||++||++|+.+.|.+.++++.++  +.++.||+         +++++++++|+
T Consensus        15 ~~~v~~l~~~~~~~~-~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~   89 (135)
T 3emx_A           15 DGRLIYITPEEFRQL-LQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAG   89 (135)
T ss_dssp             TTEEEECCHHHHHHH-HTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             cCceeecCHHHHHHH-hCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcC
Confidence            456788999999954 444  99999999999999999999999999876  89999999         88899999999


Q ss_pred             CCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          100 IRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       100 i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |.++|+++++++|+.+.++.|..+.+.+..++.+.+
T Consensus        90 v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~  125 (135)
T 3emx_A           90 VEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY  125 (135)
T ss_dssp             CCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999999999988889999999999998888775

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.68  E-value=1e-16  Score=124.79  Aligned_cols=103  Identities=27%  Similarity=0.466  Sum_probs=88.4

Q ss_pred             CCcEEe--CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l--~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ..+..+  +.++|.+.+..++++++|.||++||++|+.+.|.+.++++.+ +++.|+.||++++++++++|+|.++|+++
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALF   81 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            346677  567888566667899999999999999999999999999998 77999999999999999999999999999


Q ss_pred             EEeC----CCCCcccCCCCCcchhHHHHHHH
Q 015217          108 VFVP----GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~~~----g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|++    |+.+.++.|..+. .|.+.+.++
T Consensus        82 ~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~  111 (118)
T 2f51_A           82 FVKKEGNEIKTLDQFVGADVS-RIKADIEKF  111 (118)
T ss_dssp             EEEEETTEEEEEEEEESCCHH-HHHHHHHHH
T ss_pred             EEeCCCCcceEEEeecCCCHH-HHHHHHHHh
Confidence            9987    7767788887654 477777655

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.68  E-value=1.7e-16  Score=124.30  Aligned_cols=107  Identities=34%  Similarity=0.724  Sum_probs=96.4

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +.+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||++.+..++++|+|.++|++++|
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY   82 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEE
Confidence            56899999999876777888999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCCcccccCC----CCHHHHHHHHHHHhh
Q 015217          240 GADKDSPIPYEGA----RTAGAIESFALEQLE  267 (411)
Q Consensus       240 ~~~~~~~~~y~g~----~~~~~i~~fi~~~~~  267 (411)
                      +.++. ..++.|.    .+.+.+.+|+.+.+.
T Consensus        83 ~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           83 QYERA-KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEGG-GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             eCCCc-cceeeccccCcCCHHHHHHHHHHHHH
Confidence            76654 5667765    799999999998875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=3.8e-16  Score=125.55  Aligned_cols=111  Identities=39%  Similarity=0.744  Sum_probs=99.2

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---eEEEEEeCCCchhHHhhCcccccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ....+..++..+|.+.+ ..+++++|.||++||++|+.+.+.|.++++.+.++   +.|+.||++.+..++++|+|..+|
T Consensus        15 ~~~~v~~l~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   93 (140)
T 2dj1_A           15 EENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP   93 (140)
T ss_dssp             EETTEEECCTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSS
T ss_pred             CCCCCEEcChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccC
Confidence            45678999999999864 56789999999999999999999999999999875   999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCC
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA  271 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~  271 (411)
                      ++++|++|.  ...|.|..+.+.|.+|+.+.+.....
T Consensus        94 t~~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           94 TIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             EEEEEETTE--EEECCSCCCHHHHHHHHHHHHSSSCC
T ss_pred             eEEEEECCc--EEEcCCCCCHHHHHHHHHHhcCCCCC
Confidence            999997654  77899999999999999998865433

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.68  E-value=2.1e-16  Score=124.92  Aligned_cols=106  Identities=29%  Similarity=0.595  Sum_probs=95.5

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||++.++.++++|+|..+|++++|
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  101 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF  101 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            45899999999987777788999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ....+.|..+.+.+.+|+.+.+
T Consensus       102 ~~G~-~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          102 KNGE-VAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCE-EEEEEcCCCCHHHHHHHHHHhh
Confidence            6543 3567889999999999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.68  E-value=1.9e-15  Score=132.97  Aligned_cols=187  Identities=18%  Similarity=0.213  Sum_probs=142.5

Q ss_pred             chHHHHhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHh---cCC--eEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          169 NFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNL---KGK--VKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       169 ~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~~a~~~---~~~--~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      ++...+.+-.++++|.||++|  |++|+.+.+.+.++|+.+   +++  +.|+.+|++.++.++++|||.++|++++| +
T Consensus        16 ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-~   94 (243)
T 2hls_A           16 ELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-G   94 (243)
T ss_dssp             HHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-T
T ss_pred             HHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-C
Confidence            444545444678899999999  999999999999999984   444  99999999999999999999999999998 3


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHh---cCCccEE-E----------eHHHHHHHHHHh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEK---CGSAAIC-F----------YLEMLLSVAEKF  307 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~---~~~~~~~-~----------~~~~~~~~a~~~  307 (411)
                      +   ..+|.|......+..|+...+......+.+    +++..+.+   .+...+. |          ..+.+.++|..+
T Consensus        95 g---~~~~~G~~~~~~l~~fv~~~l~~~~~~~~l----~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~  167 (243)
T 2hls_A           95 G---EVRWTGIPAGEEIRALVEVIMRLSEDESGL----EDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEA  167 (243)
T ss_dssp             T---TEEEESCCCTTHHHHHHHHHHHHHTTCCCC----CHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHH
T ss_pred             C---ceeEcCCCcHHHHHHHHHHHHhccCCCCCC----CHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHc
Confidence            3   678989888889999988766433222222    22233322   2222222 3          347888999988


Q ss_pred             h--c-CccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHcc
Q 015217          308 K--R-GHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGR  370 (411)
Q Consensus       308 ~--~-~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~  370 (411)
                      +  + ..+.+..+|...+++++.+|++..  +|++++ +   ++. .|.|..+.++|.+||...+.
T Consensus       168 ~~~~~~~v~~~~vd~~~~~~~~~~~~V~~--vPt~~i-~---G~~-~~~G~~~~~~l~~~l~~~~~  226 (243)
T 2hls_A          168 WKQGNPVILSEAVEAYENPDIADKYGVMS--VPSIAI-N---GYL-VFVGVPYEEDFLDYVKSAAE  226 (243)
T ss_dssp             HHTTCCCEEEEEEETTTCHHHHHHTTCCS--SSEEEE-T---TEE-EEESCCCHHHHHHHHHHHHT
T ss_pred             ccccCCcEEEEEEECccCHHHHHHcCCee--eCeEEE-C---CEE-EEeCCCCHHHHHHHHHHHhh
Confidence            4  1 349999999999999999999986  999988 3   333 38899999999999999874

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.68  E-value=3.7e-16  Score=120.38  Aligned_cols=106  Identities=24%  Similarity=0.477  Sum_probs=95.5

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+..++..+|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.+..++++|++.++|++++|
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   84 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVY   84 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEE
Confidence            45789999999987777788999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ...++.|..+.+.+.+++.+.+
T Consensus        85 ~~G~-~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           85 QGGE-VAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHTHHHH
T ss_pred             eCCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            7554 3567889999999999998765

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.68  E-value=3.1e-16  Score=136.83  Aligned_cols=146  Identities=14%  Similarity=0.214  Sum_probs=113.9

Q ss_pred             CCCCCcEEeCccchhHHHhcCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHhC---CCeEEEEEeccc-----cHhHHH
Q 015217           27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFY--APWCGHCQALTPIWEKAATVLK---GVATVAALDANE-----HQSLAQ   96 (411)
Q Consensus        27 ~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~~---~~i~~~~vd~~~-----~~~~~~   96 (411)
                      .....+..+++++|+. ++.++++|+|.||  ||||+    +.|.|+++++.+.   +++.|+.|||++     ++++|+
T Consensus        13 ~~~~~v~~Lt~~nF~~-vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~   87 (248)
T 2c0g_A           13 VTCTGCVDLDELSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGD   87 (248)
T ss_dssp             --CTTCEECCTTTHHH-HHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHH
T ss_pred             CCCCCcEECCHHHHHH-HHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHH
Confidence            3456688999999995 7788899999999  99998    9999999999984   479999999998     899999


Q ss_pred             hcCCC--cccEEEEEeCCCC--Cccc--CCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccch
Q 015217           97 EYGIR--GFPTIKVFVPGKP--PVDY--QGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNF  170 (411)
Q Consensus        97 ~~~i~--~~P~~~~~~~g~~--~~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  170 (411)
                      +|+|.  ++||+++|. |..  +.+|  .|.++.+.|.+|+.+.+.         ..        .+....     -..+
T Consensus        88 ~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~---------~~--------~~~~g~-----i~~~  144 (248)
T 2c0g_A           88 RYKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP---------LY--------IGRDGC-----IKEF  144 (248)
T ss_dssp             HTTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS---------CC--------CCCTTC-----CHHH
T ss_pred             HhCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc---------cc--------cCCCCc-----hHHH
Confidence            99999  999999999 872  5788  899999999999987641         00        000011     1223


Q ss_pred             HHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 015217          171 DELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK  208 (411)
Q Consensus       171 ~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~  208 (411)
                      ..++        ..|.+.+|..|..+.+..++++..+.
T Consensus       145 d~l~--------~~f~~~~~~~~~~~~~~~~~~~~~l~  174 (248)
T 2c0g_A          145 NEVL--------KNYANIPDAEQLKLIEKLQAKQEQLT  174 (248)
T ss_dssp             HHHH--------TTGGGSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHH--------HHHhcccchhHHHHHHHHHHHHHHcc
Confidence            3322        13677788888888888888887764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.68  E-value=6.9e-16  Score=123.34  Aligned_cols=110  Identities=27%  Similarity=0.495  Sum_probs=97.0

Q ss_pred             CCCcEEeCccchHHHHhc-----------CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhh
Q 015217          159 SNESIELNSSNFDELVLK-----------SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK  227 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~-----------~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~  227 (411)
                      ...+..++..+|.+.+.+           .+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||++.+..++++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~   87 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGA   87 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence            456889999999987654           457999999999999999999999999999998899999999999999999


Q ss_pred             CccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          228 FNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       228 ~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      |+|..+|++++|..+++ ...+.|..+.+.|.+|+.+.+...
T Consensus        88 ~~v~~~Pt~~~~~~~G~-~~~~~G~~~~~~l~~~l~~~~~~~  128 (136)
T 2l5l_A           88 FGIRSIPSILFIPMEGK-PEMAQGAMPKASFKKAIDEFLLKK  128 (136)
T ss_dssp             TTCCSSCEEEEECSSSC-CEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             cCCCCCCEEEEECCCCc-EEEEeCCCCHHHHHHHHHHHhhcc
Confidence            99999999999944443 457899999999999999987643

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.67  E-value=1.7e-16  Score=123.18  Aligned_cols=107  Identities=22%  Similarity=0.365  Sum_probs=91.7

Q ss_pred             CCCCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217          156 KSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       156 ~~~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      .+..+.....+.++|.+.+.. .+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.||++.++.++++|+|..+|
T Consensus         8 ~~~~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~P   86 (116)
T 3qfa_C            8 HHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMP   86 (116)
T ss_dssp             ----CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             ccCCcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCcccc
Confidence            446677788888999997653 678999999999999999999999999999987 999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++++|++|. ....+.|. +.+.|.+++.+.
T Consensus        87 t~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           87 TFQFFKKGQ-KVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEEESSSS-EEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEeCCe-EEEEEcCC-CHHHHHHHHHHh
Confidence            999996554 36678888 999999998765

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.67  E-value=2.8e-16  Score=122.87  Aligned_cols=107  Identities=32%  Similarity=0.677  Sum_probs=94.1

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-----CeEEEEEeCCCchhHHhhCcccc
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-----KVKLGHVDCDSEKSLMSKFNVQG  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-----~~~f~~v~~~~~~~l~~~~~v~~  232 (411)
                      ....+..++.++|.+.+...+++++|.||++||++|+.+.+.|.++++.+.+     ++.|+.+|++.++ +++  +|..
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            5677999999999986556778999999999999999999999999999987     7999999998766 555  9999


Q ss_pred             ccEEEEEcCCCCC-cccccCCCCHHHHHHHHHHHhh
Q 015217          233 FPTILVFGADKDS-PIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       233 ~P~i~~~~~~~~~-~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++++|++++.. ..+|.|..+.+.|.+|+.+++.
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence            9999999877553 6789999999999999988753

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.67  E-value=4.7e-17  Score=127.74  Aligned_cols=109  Identities=11%  Similarity=0.094  Sum_probs=96.5

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHhhCccccccEEE
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .+..+++.+|.+.+ .+.++++|+||++|  |++|+.+.|.+.++++.|.++ +.|+.||.+.+++++.+|||.++||++
T Consensus        18 g~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTli   96 (140)
T 2qgv_A           18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATL   96 (140)
T ss_dssp             TCEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEE
T ss_pred             CCccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            67899999999987 47778999999999  999999999999999999999 999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCC
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLETNVA  271 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~  271 (411)
                      +|++|.. ..+..|..+...+.+++.+.+...+.
T Consensus        97 lFk~G~~-v~~~~G~~~k~~l~~~i~~~l~~~~~  129 (140)
T 2qgv_A           97 VFTGGNY-RGVLNGIHPWAELINLMRGLVEPQQE  129 (140)
T ss_dssp             EEETTEE-EEEEESCCCHHHHHHHHHHHHC----
T ss_pred             EEECCEE-EEEEecCCCHHHHHHHHHHHhcCCCC
Confidence            9998764 56778989999999999988754433

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.67  E-value=3.5e-16  Score=119.44  Aligned_cols=104  Identities=30%  Similarity=0.528  Sum_probs=93.5

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..++..+|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.++.+|++.++.++++|++.++|++++|++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeC
Confidence            67899999998777778899999999999999999999999999999889999999999999999999999999999965


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |. ...++.|..+.+.+.+++.+.+
T Consensus        83 G~-~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           83 GK-KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SS-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             CE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            44 3567889999999999988753

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.67  E-value=4.3e-16  Score=119.76  Aligned_cols=104  Identities=36%  Similarity=0.811  Sum_probs=93.1

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~---~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      .+.+..++.++|.+.+.  +++++|.||++||++|+.+.+.+.++++.+.   ..+.|+.+|++.++.++++|+|..+|+
T Consensus         4 ~~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   81 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT   81 (111)
T ss_dssp             -CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccE
Confidence            45789999999999765  7799999999999999999999999999876   369999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +++|++|. ...++.|..+.+.|.+|+.++
T Consensus        82 ~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           82 LLLFRGGK-KVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEEETTE-EEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEEeCCc-EEEeccCCcCHHHHHHHHHhc
Confidence            99997664 367889999999999999875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.67  E-value=5.4e-16  Score=118.71  Aligned_cols=106  Identities=29%  Similarity=0.568  Sum_probs=95.6

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      .+.+..++.++|.+.+ ..+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++.++|++++
T Consensus         3 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A            3 EDVTLVLTEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLI   81 (109)
T ss_dssp             CCCCEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCeEEEecHHHHHHHH-hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEE
Confidence            4678999999999865 558899999999999999999999999999999899999999999999999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          239 FGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |++|. ...++.|..+.+.+.+++.+.+
T Consensus        82 ~~~g~-~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           82 FVNGQ-LVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EETTE-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             EcCCc-EEEeeeccCCHHHHHHHHHHHh
Confidence            96554 4677899999999999998764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.67  E-value=3.2e-16  Score=125.84  Aligned_cols=106  Identities=18%  Similarity=0.345  Sum_probs=91.3

Q ss_pred             CCCcEEeC-ccchhHHHh---cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217           29 SSPVVQLT-PNNFKSKVL---NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        29 ~~~~~~l~-~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      ...+..++ .++|.+.+.   .++++++|+||++||++|+.+.|.+.++++.++ ++.|+.||++++++++++|+|.++|
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~P  101 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATP  101 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEES
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCccc
Confidence            45566665 688885443   358899999999999999999999999999985 5899999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      +++++.+|+.+.++.|. +.+.+.+++.+.++
T Consensus       102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A          102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred             EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence            99999888877788888 78888888887763

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.67  E-value=2.7e-16  Score=122.33  Aligned_cols=104  Identities=22%  Similarity=0.481  Sum_probs=89.8

Q ss_pred             CCcEEe-CccchhHHHhc---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           30 SPVVQL-TPNNFKSKVLN---ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        30 ~~~~~l-~~~~f~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ..+..+ +.++|++.+..   ++++++|.||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|++.++|+
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt   84 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPT   84 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcE
Confidence            456777 46788854433   48899999999999999999999999999987 68999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++++++|+.+.++.| .+.+.+.+++.+.+
T Consensus        85 ~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~  113 (118)
T 2vm1_A           85 FLFIKDGEKVDSVVG-GRKDDIHTKIVALM  113 (118)
T ss_dssp             EEEEETTEEEEEEES-CCHHHHHHHHHHHH
T ss_pred             EEEEeCCeEEEEecC-CCHHHHHHHHHHHh
Confidence            999998887778888 57888888888765

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.66  E-value=8.3e-16  Score=124.81  Aligned_cols=109  Identities=28%  Similarity=0.579  Sum_probs=98.9

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ....+..++.++|.+.+ ..+++++|.||++||++|+.+.+.|.++++.+.+++.|+.||++.+..++++|+|.++|+++
T Consensus        36 ~~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~  114 (148)
T 3p2a_A           36 FDGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIM  114 (148)
T ss_dssp             TCCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEE
Confidence            35679999999999976 77889999999999999999999999999999889999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      +|++|. ...+|.|..+.+.|.+|+.+.+..
T Consensus       115 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          115 LYRNGK-MIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEETTE-EEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEECCe-EEEEEeCCCCHHHHHHHHHHHhcc
Confidence            997554 356789999999999999998763

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=2.8e-16  Score=125.14  Aligned_cols=110  Identities=29%  Similarity=0.617  Sum_probs=96.6

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ....+..++..+|...+...+++++|.||++||++|+.+.+.|.++++.+.  +.+.|+.||++.+..++++|+|..+|+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            467899999999998765567899999999999999999999999999998  469999999999999999999999999


Q ss_pred             EEEEcCCCCC-ccccc-CCCCHHHHHHHHHHHhh
Q 015217          236 ILVFGADKDS-PIPYE-GARTAGAIESFALEQLE  267 (411)
Q Consensus       236 i~~~~~~~~~-~~~y~-g~~~~~~i~~fi~~~~~  267 (411)
                      +++|.+++.. .+.|. |..+.+.|.+|+.+++.
T Consensus        85 ~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             EEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             EEEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence            9999876542 34677 55899999999999875

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.66  E-value=6.1e-16  Score=117.61  Aligned_cols=103  Identities=27%  Similarity=0.552  Sum_probs=92.6

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++.++|+++++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   81 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeC
Confidence            67889999999777778899999999999999999999999999999889999999999999999999999999999975


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |. ....+.|..+.+.+.+++.+.
T Consensus        82 g~-~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           82 GE-RKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             TE-EEEEEEECCCHHHHHHHHHHH
T ss_pred             Ce-EEEEEecCCCHHHHHHHHHhh
Confidence            54 356688989999999998765

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=7.6e-16  Score=121.36  Aligned_cols=106  Identities=28%  Similarity=0.584  Sum_probs=94.2

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      ....+..++.++|.+.+ +  +.++|.||++||++|+.+.+.+.++++.+.+ .+.|+.||++.+..++++|+|..+|++
T Consensus         5 ~~~~v~~l~~~~f~~~~-~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            5 SSGNVRVITDENWRELL-E--GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCCSEEECCTTTHHHHT-S--SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEecHHHHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            45679999999999854 3  2489999999999999999999999999986 799999999999999999999999999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          237 LVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      ++|++|.  ..+|.|..+.+.+.+|+.+.+..
T Consensus        82 ~~~~~G~--~~~~~G~~~~~~l~~~l~~~~~~  111 (126)
T 1x5e_A           82 YHCKDGE--FRRYQGPRTKKDFINFISDKEWK  111 (126)
T ss_dssp             EEEETTE--EEECCSCCCHHHHHHHHHTCGGG
T ss_pred             EEEeCCe--EEEeecCCCHHHHHHHHHHHhhc
Confidence            9996554  57899999999999999988753

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.66  E-value=5.6e-16  Score=126.64  Aligned_cols=107  Identities=25%  Similarity=0.605  Sum_probs=96.2

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ...+..++..+|.+.+ ..+++++|.||++||++|+.+.+.|.++++.+.+++.|+.||++.++.++++|+|..+|++++
T Consensus        46 ~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  124 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFIL  124 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred             CCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence            4567889999999876 667899999999999999999999999999999889999999999999999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          239 FGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      |++|. ...++.|..+.+.|.+|+.+.+.
T Consensus       125 ~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          125 FHKGR-ELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             EETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EeCCe-EEEEecCCCCHHHHHHHHHHHhc
Confidence            97554 35678899999999999998764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.65  E-value=3.5e-16  Score=122.33  Aligned_cols=108  Identities=24%  Similarity=0.482  Sum_probs=95.7

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ....+..++..+|.+.+...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++.++|+++
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   89 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI   89 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            45679999999999877777889999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +|++|. ...++.|..+.+.+.+++.+.+
T Consensus        90 ~~~~g~-~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           90 LFKDGQ-PVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHTCSCC
T ss_pred             EEECCE-EEEEecCCCCHHHHHHHHHHHH
Confidence            997544 3567889999999999987654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.65  E-value=6.2e-16  Score=117.63  Aligned_cols=102  Identities=23%  Similarity=0.529  Sum_probs=90.5

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..++.++|.+ +.+.+++++|.||++||++|+.+.+.+.++++.+.+++.++.+|++.+..++++|++.++|++++|++
T Consensus         2 v~~l~~~~~~~-~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   80 (105)
T 1nsw_A            2 TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHH-HHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceeccHHhHHH-HHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence            67899999995 45677899999999999999999999999999998889999999999999999999999999999965


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |. ....+.|..+.+.+.+++.+.
T Consensus        81 G~-~~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           81 GR-PVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             TE-EEEEEESCCCHHHHHHHTTTT
T ss_pred             Ce-EEEEEecCCCHHHHHHHHHHH
Confidence            43 356788999999998887654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.65  E-value=1.3e-15  Score=131.20  Aligned_cols=108  Identities=31%  Similarity=0.788  Sum_probs=98.5

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ....+..++..+|...+ ..+++++|.||++||++|+.+.+.|.++++.+.+++.|+.||++.+..++++|+|.++|+++
T Consensus        95 ~~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  173 (210)
T 3apq_A           95 DDPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF  173 (210)
T ss_dssp             TCTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEE
Confidence            35678999999999875 66789999999999999999999999999999989999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|. ....+.|..+.+.|.+|+.+.+.
T Consensus       174 ~~~~G~-~~~~~~G~~~~~~l~~~i~~~l~  202 (210)
T 3apq_A          174 IFRSGM-AAVKYNGDRSKESLVAFAMQHVR  202 (210)
T ss_dssp             EECTTS-CCEECCSCCCHHHHHHHHHHHHH
T ss_pred             EEECCC-ceeEecCCCCHHHHHHHHHHhCc
Confidence            996554 47789999999999999999886

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.65  E-value=1.2e-15  Score=132.69  Aligned_cols=121  Identities=28%  Similarity=0.552  Sum_probs=105.9

Q ss_pred             CCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          156 KSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       156 ~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      .+....+..++.++|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+++.|+.||++.++.++++|+|.++|+
T Consensus         8 ~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   87 (222)
T 3dxb_A            8 HPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT   87 (222)
T ss_dssp             -CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSE
T ss_pred             CCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCE
Confidence            44678899999999999777888999999999999999999999999999999899999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceE
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTE  277 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~  277 (411)
                      +++|++|. ...++.|..+.+.+.+|+.+.+......+.+..
T Consensus        88 ~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~~~~~s~v~~  128 (222)
T 3dxb_A           88 LLLFKNGE-VAATKVGALSKGQLKEFLDANLAGSAMESTVMV  128 (222)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHSCCSCCBCSEEE
T ss_pred             EEEEECCe-EEEEeccccChHHHHHHHHhhccccccccccch
Confidence            99998654 356889999999999999998865544444333

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=9.4e-16  Score=122.27  Aligned_cols=102  Identities=16%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             CCCCcEEeCccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           28 SSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ....+.+++.++|.+.+...  +++++|+||++||++|+.+.|.|+++++.+. .+.|+.||+++..   ++|+|.++|+
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt   83 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPT   83 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSE
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCE
Confidence            34568889999999655443  3699999999999999999999999999885 5899999999875   7899999999


Q ss_pred             EEEEeCCCCCcccCCCC-------CcchhHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGAR-------DVKPIAEFALQ  133 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~-------~~~~l~~~~~~  133 (411)
                      +++|.+|+.+.++.|..       +.+.|.+++.+
T Consensus        84 ~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~  118 (135)
T 2dbc_A           84 IFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSE  118 (135)
T ss_dssp             EEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHH
Confidence            99999998888888875       45555555554

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.64  E-value=1.1e-15  Score=116.99  Aligned_cols=104  Identities=27%  Similarity=0.547  Sum_probs=93.1

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      .+..++.++|.+. .+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++.++|++++|+
T Consensus         2 ~v~~l~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (109)
T 2yzu_A            2 KPIEVTDQNFDET-LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFK   80 (109)
T ss_dssp             CCEECCTTTHHHH-HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             cceEccHhHHHHH-hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence            4788999999964 567889999999999999999999999999999988999999999999999999999999999996


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          241 ADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +|. ....+.|..+.+.+.+|+.+.+
T Consensus        81 ~g~-~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           81 DGQ-PVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             TTE-EEEEEESCCCHHHHHHHHHTTC
T ss_pred             CCc-EeeeEeCCCCHHHHHHHHHHHh
Confidence            544 3557889999999999998765

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.64  E-value=1.5e-15  Score=115.10  Aligned_cols=102  Identities=28%  Similarity=0.538  Sum_probs=91.6

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      |..++.++|.+.+ ..+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.+..++++|++.++|++++|++
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            4678899999976 6678999999999999999999999999999987 9999999999999999999999999999965


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |. ....+.|..+.+.+.+|+.+.+
T Consensus        79 g~-~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           79 GE-PVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             TE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             Ce-EhhhccCCCCHHHHHHHHHHHh
Confidence            44 3567889999999999998875

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.64  E-value=1.6e-16  Score=150.02  Aligned_cols=107  Identities=26%  Similarity=0.410  Sum_probs=90.2

Q ss_pred             ccccccCCCCCcEEeCccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---C-----CeEEEEEecccc
Q 015217           21 LSDALYGSSSPVVQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---G-----VATVAALDANEH   91 (411)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~-----~i~~~~vd~~~~   91 (411)
                      .....+.....+..++.++|+..+.. .+++++|+|||+||++|+.+.|.|+++++.+.   +     .+.|+.|||+++
T Consensus        14 ~~~~l~~~~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~   93 (470)
T 3qcp_A           14 PRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE   93 (470)
T ss_dssp             CCCCSCTTCTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC
T ss_pred             ccccccCCCCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC
Confidence            34456667788999999999944432 34799999999999999999999999999987   2     599999999999


Q ss_pred             HhHHHhcCCCcccEEEEEeCCCC--CcccCCCCCcchh
Q 015217           92 QSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPI  127 (411)
Q Consensus        92 ~~~~~~~~i~~~P~~~~~~~g~~--~~~~~g~~~~~~l  127 (411)
                      +++|++|+|.++|++++|.+|+.  ..+|.|.++.+.+
T Consensus        94 ~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L  131 (470)
T 3qcp_A           94 VDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHV  131 (470)
T ss_dssp             HHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEE
T ss_pred             HHHHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHH
Confidence            99999999999999999975543  7789998777753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.63  E-value=2.4e-16  Score=125.43  Aligned_cols=104  Identities=17%  Similarity=0.369  Sum_probs=86.5

Q ss_pred             CCCcEEeCc-cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           29 SSPVVQLTP-NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        29 ~~~~~~l~~-~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ...+.++++ ++|...+.. ++++++|.||++||++|+.+.|.++++++.+  ++.++.+|++++++++++|+|.++|++
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   96 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTF   96 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEE
Confidence            455778876 777744332 3579999999999999999999999988776  589999999999999999999999999


Q ss_pred             EEEe--CCC--CCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFV--PGK--PPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~--~g~--~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|.  +|+  .+.++.|. +.+.|.+++.+.+
T Consensus        97 ~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           97 EFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             EEEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred             EEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence            9996  776  56778887 7888888887654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.62  E-value=2.7e-15  Score=114.17  Aligned_cols=102  Identities=23%  Similarity=0.500  Sum_probs=88.8

Q ss_pred             cEEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..+++ +++.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.+..++++|++.++|++++|
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEE
Confidence            456777 788887654 678999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++|. ....+.| .+.+.+.+++.+.
T Consensus        82 ~~G~-~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           82 KNGV-KVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             ETTE-EEEEEES-CCHHHHHHHHHHT
T ss_pred             cCCc-EEEEEcC-CCHHHHHHHHHHh
Confidence            7654 3567788 7888999998764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.62  E-value=4.2e-15  Score=113.41  Aligned_cols=102  Identities=21%  Similarity=0.324  Sum_probs=85.8

Q ss_pred             cEEe-CccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIEL-NSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l-~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..+ +.++|.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+ +++.|+.+|++.++.++++|++.++|++++|
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence            4555 55788887653 6789999999999999999999999999999 4699999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ...++.| ...++|.+++.+.+
T Consensus        82 ~~G~-~~~~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           82 RNKV-RIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             ECCe-EEEEEeC-CCHHHHHHHHHHhc
Confidence            7654 3556778 45566999988764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.62  E-value=4.4e-16  Score=122.04  Aligned_cols=106  Identities=30%  Similarity=0.630  Sum_probs=88.4

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCCh--------------hhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCG--------------HCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM  225 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~--------------~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~  225 (411)
                      ..+..++..+|.+.+.+.+++++|.||++||+              +|+.+.|.|.++++.+.+++.|+.+|++.++.++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~   82 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA   82 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence            35889999999987777888999999999999              9999999999999999888999999999999999


Q ss_pred             hhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       226 ~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|+|.++|++++|++|. ...++.|..+.+++.+|+.+.+
T Consensus        83 ~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           83 PKYGIRGIPTLLLFKNGE-VAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             GGGTCCBSSEEEEEESSS-EEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHcCCCccCEEEEEECCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            999999999999996544 3567899999999999987643

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.62  E-value=5.6e-15  Score=113.52  Aligned_cols=106  Identities=21%  Similarity=0.382  Sum_probs=90.7

Q ss_pred             CCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~v~~~P~  235 (411)
                      ....+..++.++|.+.+.. .+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++ .+..++++|++.++|+
T Consensus         3 ~~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt   81 (111)
T 2pu9_C            3 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   81 (111)
T ss_dssp             CTTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSE
T ss_pred             CcCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeE
Confidence            3567999999999997754 577999999999999999999999999999875 999999998 7889999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++++++|. ...++.|. +.+.+.+++.+.+
T Consensus        82 ~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           82 FKILKENS-VVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             EEEESSSS-EEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEeCCc-EEEEEcCC-CHHHHHHHHHHhh
Confidence            88887654 34567776 4888999987653

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.62  E-value=3.4e-15  Score=116.84  Aligned_cols=107  Identities=21%  Similarity=0.356  Sum_probs=93.0

Q ss_pred             CCCCcEEeCccchHHHHhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217          158 DSNESIELNSSNFDELVLK---SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ..+.+..++.++|.+.+..   .+++++|.||++||++|+.+.+.|.++++.+.+ +.|+.||++.+..++++|++.++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~P   89 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMP   89 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCccc
Confidence            3456777788999987765   578999999999999999999999999999987 999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++++|++|. ...++.|.. .+.+.+|+.+.+.
T Consensus        90 t~~~~~~G~-~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           90 TFLFMKEGD-VKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEEEETTE-EEEEEESSC-HHHHHHHHHHHHS
T ss_pred             EEEEEeCCE-EEEEEeCcC-HHHHHHHHHHHhc
Confidence            999997554 356788888 8999999988763

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.62  E-value=8.9e-14  Score=123.23  Aligned_cols=204  Identities=17%  Similarity=0.226  Sum_probs=159.9

Q ss_pred             cEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           32 VVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        32 ~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      +..|++ ++++ .++..+++++|-|+++|   |....+.|.++|..+++++.|+.+.   +..++++|++.+ |++++|+
T Consensus         8 v~~l~s~~~~~-~~l~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~~fk   79 (252)
T 2h8l_A            8 SVPLRTEEEFK-KFISDKDASIVGFFDDS---FSEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGIILFR   79 (252)
T ss_dssp             EEECCSHHHHH-HHHTSSSCEEEEEESCT---TSHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEEEEC
T ss_pred             ceeecCHHHHH-HHhhcCCeEEEEEECCC---CChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEEEEc
Confidence            567754 4455 66777889999999998   4566789999999999889998884   577999999997 9999998


Q ss_pred             CC-------CCCccc-CCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEE
Q 015217          111 PG-------KPPVDY-QGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWI  182 (411)
Q Consensus       111 ~g-------~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~l  182 (411)
                      ++       .....| .|..+.+.|.+|+...                       .-+.+.++|.+++...   ...+.+
T Consensus        80 ~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~-----------------------~~Plv~e~t~~n~~~~---~~~~~~  133 (252)
T 2h8l_A           80 PSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN-----------------------IFGICPHMTEDNKDLI---QGKDLL  133 (252)
T ss_dssp             CGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH-----------------------SSCSSCEECTTTHHHH---SSSSEE
T ss_pred             chhhcccccccccccCCCCcCHHHHHHHHHhc-----------------------ccCCeeecccccHhhh---cCCCeE
Confidence            63       235678 8999999999999877                       4688999999999884   233455


Q ss_pred             EEEeCCCCh---h-hhhhhHHHHHHHHHhcCC---eEEEEEeCCCchhHHhhCcc----ccccEEEEEcCCCCCcccccC
Q 015217          183 VEFFAPWCG---H-CKKLAPEWKKAANNLKGK---VKLGHVDCDSEKSLMSKFNV----QGFPTILVFGADKDSPIPYEG  251 (411)
Q Consensus       183 v~f~~~~c~---~-c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~l~~~~~v----~~~P~i~~~~~~~~~~~~y~g  251 (411)
                      |.|+...+.   . ...+...+.++|+.|+++   +.|+.+|++....+++.||+    ..+|+++++...+ ..+.+.+
T Consensus       134 v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~-~ky~~~~  212 (252)
T 2h8l_A          134 IAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKG-EKFVMQE  212 (252)
T ss_dssp             EEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTS-CEEECCS
T ss_pred             EEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcC-cEecCCc
Confidence            666643221   1 124778899999999987   99999999988889999999    3589999985433 2455667


Q ss_pred             CCCHHH--HHHHHHHHhhhcC
Q 015217          252 ARTAGA--IESFALEQLETNV  270 (411)
Q Consensus       252 ~~~~~~--i~~fi~~~~~~~~  270 (411)
                      .++.+.  |.+|+...+....
T Consensus       213 ~~t~~~~~i~~F~~~~~~Gkl  233 (252)
T 2h8l_A          213 EFSRDGKALERFLQDYFDGNL  233 (252)
T ss_dssp             CCCTTSHHHHHHHHHHHHTCS
T ss_pred             ccCcchHHHHHHHHHHHCCCc
Confidence            888888  9999999887554

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.61  E-value=5.6e-15  Score=116.03  Aligned_cols=105  Identities=24%  Similarity=0.412  Sum_probs=91.7

Q ss_pred             CCCcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          159 SNESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       159 ~~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ...+..+++ ++|.+.+ ..+++++|.||++||++|+.+.+.+.++++.+. .+.|+.||++.+..++++|+|..+|+++
T Consensus        18 ~~mv~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   95 (125)
T 1r26_A           18 YPSVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFI   95 (125)
T ss_dssp             CSCCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccceEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            344889999 8898875 778899999999999999999999999999985 5999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|. ....+.| .+.+.|.+++.+.+.
T Consensus        96 i~~~G~-~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           96 IARSGK-MLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEETTE-EEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EEeCCe-EEEEEeC-CCHHHHHHHHHHHhc
Confidence            997654 3556788 688999999988753

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.61  E-value=1.2e-15  Score=119.00  Aligned_cols=108  Identities=39%  Similarity=0.756  Sum_probs=95.0

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ...+..++..+|.+.+ ..+++++|.||++||++|+.+.+.+.++++.+.+   .+.|+.+|++.+..++++|++.++|+
T Consensus         6 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCcEEechhhHHHHH-ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            4568999999999864 5678999999999999999999999999999874   59999999999999999999999999


Q ss_pred             EEEEcCCCC-CcccccCCCCHHHHHHHHHHHhh
Q 015217          236 ILVFGADKD-SPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       236 i~~~~~~~~-~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +++|++|.. ....|.|..+.+.+.+|+.+++.
T Consensus        85 ~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            999976553 13788999999999999987753

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.61  E-value=3.4e-15  Score=114.88  Aligned_cols=104  Identities=24%  Similarity=0.472  Sum_probs=89.9

Q ss_pred             CcEEe-CccchHHHHhc-C--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEE
Q 015217          161 ESIEL-NSSNFDELVLK-S--KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       161 ~v~~l-~~~~~~~~~~~-~--~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      .+..+ +..+|.+.+.. .  +++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.+..++++|++.++|++
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   82 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence            46777 45778887654 2  78999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          237 LVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|++|. ...++.|. +.+.+.+++.+.+
T Consensus        83 ~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           83 HVYKDGV-KADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEETTE-EEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEECCe-EEEEEcCC-CHHHHHHHHHHHh
Confidence            9997554 35678887 8999999998765

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.61  E-value=2.6e-16  Score=124.78  Aligned_cols=109  Identities=20%  Similarity=0.476  Sum_probs=93.2

Q ss_pred             ccCCCCCcEEeC-ccchhHHHhc---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCC
Q 015217           25 LYGSSSPVVQLT-PNNFKSKVLN---ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGI  100 (411)
Q Consensus        25 ~~~~~~~~~~l~-~~~f~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i  100 (411)
                      .......+..++ .++|+..+..   ++++++|+||++||++|+.+.|.+.++++.++ ++.++.+|++++++++++|+|
T Consensus         9 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v   87 (130)
T 1wmj_A            9 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNV   87 (130)
T ss_dssp             CCSSCSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTC
T ss_pred             ccccCcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCC
Confidence            444556677774 5788855533   58899999999999999999999999999987 589999999999999999999


Q ss_pred             CcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          101 RGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       101 ~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      .++|+++++.+|+.+.++.| .+.+.+.+++.+.+
T Consensus        88 ~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           88 EAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             CSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHT
T ss_pred             CccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHH
Confidence            99999999988888888888 58888999988765

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.1e-15  Score=121.03  Aligned_cols=103  Identities=18%  Similarity=0.415  Sum_probs=87.4

Q ss_pred             EEeCccchhHHHh---cCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCccc
Q 015217           33 VQLTPNNFKSKVL---NANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFP  104 (411)
Q Consensus        33 ~~l~~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P  104 (411)
                      ..++..+|.+.+.   .++++++|.||++||++|+.+.|.+   ..+.+.+.+++.++.+|++  ....++++|+|.++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            3456677774442   4689999999999999999999999   7777777677899999998  578899999999999


Q ss_pred             EEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          105 TIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       105 ~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++++ .+|+.+.++.|..+.+.+.+++.+.+
T Consensus        89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLGV  120 (130)
T ss_dssp             EEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            99999 56776778899999999999998775

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.60  E-value=5.8e-15  Score=128.41  Aligned_cols=100  Identities=24%  Similarity=0.378  Sum_probs=90.1

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEEC--CCChhhhhhhHHHHHHHHHhC--CCeEEEEEe-----ccccHhHHHhcCC
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYA--PWCGHCQALTPIWEKAATVLK--GVATVAALD-----ANEHQSLAQEYGI  100 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~--~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd-----~~~~~~~~~~~~i  100 (411)
                      ..+..|++.+|+. ++.++++|+|.||+  |||+    +.|.|++++..+.  +++.|+.||     |+.++++|++|+|
T Consensus         5 ~~v~~Lt~~nF~~-~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYK-VIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHH-HGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHH-HHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            5688999999994 66778999999999  9999    9999999999986  369999999     5558999999999


Q ss_pred             C--cccEEEEEeCCC--CCcccCCCCCcchhHHHHHHH
Q 015217          101 R--GFPTIKVFVPGK--PPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       101 ~--~~P~~~~~~~g~--~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      .  ++||+++|.+|+  .+.+|.|.++.+.|.+|+.+.
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence            9  999999999987  478999999999999999865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.60  E-value=3.6e-15  Score=119.80  Aligned_cols=106  Identities=26%  Similarity=0.522  Sum_probs=81.2

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +.+..++.++|...+.+.++ ++|.||++||++|+.+.+.+.+++..+.+++.|+.||++.+..++++|++.++|++++|
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  111 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF  111 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEE
Confidence            56788999999987665555 99999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++|. ....+.|..+.+.+.+|+.+.+.
T Consensus       112 ~~G~-~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          112 RRGA-PVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHHHT
T ss_pred             eCCc-EEEEEeCCCCHHHHHHHHHHHHc
Confidence            7554 35678899999999999988764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.60  E-value=5e-15  Score=113.40  Aligned_cols=103  Identities=26%  Similarity=0.450  Sum_probs=87.8

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      .......+..+|.+. ...+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.+..++++|+|.++|++++
T Consensus         6 ~~~~~~~~~~~f~~~-~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A            6 HMVTQFKTASEFDSA-IAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             CCCEECCSHHHHHHH-TTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccccCCCCHHHHHHH-HhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            344555667788875 56688999999999999999999999999999875 9999999999999999999999999999


Q ss_pred             EcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          239 FGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |++| +...++.|. +.+.|.+++.++
T Consensus        84 ~~~G-~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           84 FKNG-KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence            9854 446677787 778999998765

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.60  E-value=8.7e-16  Score=116.86  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=74.7

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCC
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS  245 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~  245 (411)
                      +.++|.+. .+.+++++|.||++||++|+.+.|.+.++++.+. ++.|+.||++.++.++++|+|.++|++++|++|. .
T Consensus         7 ~~~~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~-~   83 (105)
T 4euy_A            7 TIEELATY-IEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK-E   83 (105)
T ss_dssp             ---CCSSS-TTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTE-E
T ss_pred             CHHHHHHH-HhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe-E
Confidence            34556664 3667899999999999999999999999999984 6999999999999999999999999999998554 3


Q ss_pred             cccccCCCCHHHHHHHHHHHh
Q 015217          246 PIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ..++.|..+.+.+.+++.+.+
T Consensus        84 ~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           84 ILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEESSCCHHHHHHHHHTTC
T ss_pred             EEEEeCCcCHHHHHHHHHHhh
Confidence            677789999999999987653

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.60  E-value=2.5e-15  Score=116.09  Aligned_cols=104  Identities=21%  Similarity=0.364  Sum_probs=87.0

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ..+.+..+++.+..+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.+..++++|++..+|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~   88 (114)
T 2oe3_A           10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFV   88 (114)
T ss_dssp             CGGGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             chhheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEE
Confidence            3455566666555554667788999999999999999999999999999987 999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      ++++|. ...++.|.. .+.|.+++.+
T Consensus        89 ~~~~G~-~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGKDGQ-LIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEETTE-EEEEEESSC-HHHHHHHHHT
T ss_pred             EEeCCe-EEEEEeCCC-HHHHHHHHHh
Confidence            997554 355688877 8888888753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=5.5e-16  Score=124.11  Aligned_cols=105  Identities=25%  Similarity=0.502  Sum_probs=90.0

Q ss_pred             CCCCcEEeCccchHHHHhcCCC-eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccc----
Q 015217          158 DSNESIELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQ----  231 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~-~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~----  231 (411)
                      .+..+..++.++|.+.+.+... +++|.||++||++|+.+.|.|.++++.+.+ ++.|+.||++.++.++++|+|.    
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPL   84 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSS
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCC
Confidence            4567999999999998765554 899999999999999999999999999986 7999999999999999999999    


Q ss_pred             --cccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          232 --GFPTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       232 --~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                        .+|++++|++|. ...++.|..+.+.+.+|+.
T Consensus        85 ~~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           85 TKQLPTLILFQGGK-EAMRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             SSCSSEEEEESSSS-EEEEESCBCSSSCBCCCCC
T ss_pred             cCCCCEEEEEECCE-EEEEecCcCchHHHHHHHh
Confidence              999999997654 3566788777666655553

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.59  E-value=1.7e-15  Score=120.52  Aligned_cols=90  Identities=26%  Similarity=0.428  Sum_probs=80.0

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHHH--HHHHHhCCCeEEEEEec---cccHhHHHhcCC---CcccEEEEE-eCCCCC
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIWE--KAATVLKGVATVAALDA---NEHQSLAQEYGI---RGFPTIKVF-VPGKPP  115 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~--~~~~~~~~~i~~~~vd~---~~~~~~~~~~~i---~~~P~~~~~-~~g~~~  115 (411)
                      ..++++++|+||++||++|+.+.|.|.  +++..+++++.++.||+   +.+++++++|+|   .++|+++++ .+|+.+
T Consensus        26 ~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             HhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            457999999999999999999999999  99999877899999999   899999999999   999999999 678777


Q ss_pred             cccCC-------CCCcchhHHHHHHH
Q 015217          116 VDYQG-------ARDVKPIAEFALQQ  134 (411)
Q Consensus       116 ~~~~g-------~~~~~~l~~~~~~~  134 (411)
                      .++.|       ..+.+.+.+|+.+.
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHh
Confidence            77777       56777888887654

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.59  E-value=4.9e-15  Score=114.09  Aligned_cols=105  Identities=28%  Similarity=0.516  Sum_probs=90.9

Q ss_pred             CCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEE
Q 015217          157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       157 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      ++++....++..+|.+.+ +.+++++|.||++||++|+.+.+.+.++++.+. .+.|+.||++.++.++++|++..+|++
T Consensus         6 ~~~~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            6 HHHMVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             ---CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             cceeEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            367788899999999975 577899999999999999999999999999987 499999999999999999999999999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          237 LVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +++++|. ...++.|. +.+.+.+++.+.
T Consensus        84 ~~~~~G~-~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           84 KVYKNGS-SVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEEETTE-EEEEEESC-CHHHHHHHHHTT
T ss_pred             EEEECCc-EEEEEeCC-CHHHHHHHHHHh
Confidence            9997554 35567888 899999998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.59  E-value=7.6e-15  Score=112.96  Aligned_cols=104  Identities=19%  Similarity=0.352  Sum_probs=85.3

Q ss_pred             cEEeCc-cchHHHHhc--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          162 SIELNS-SNFDELVLK--SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-GKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       162 v~~l~~-~~~~~~~~~--~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~-~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      +..+++ ++|.+.+..  .+++++|.||++||++|+.+.+.+.++++.+. ..+.|+.+|++.++.++++|++.++|+++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   81 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI   81 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence            677887 888886642  36799999999999999999999999999963 46999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|. ...++.|. ..+++.+++.+.+.
T Consensus        82 ~~~~G~-~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           82 IIHKGT-ILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             EEETTE-EEEEECSC-CHHHHHHHHHHHHH
T ss_pred             EEECCE-EEEEecCC-CHHHHHHHHHHHHh
Confidence            997554 35567776 55679999887764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.59  E-value=7.8e-15  Score=111.42  Aligned_cols=100  Identities=25%  Similarity=0.454  Sum_probs=85.2

Q ss_pred             EEe-CccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          163 IEL-NSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       163 ~~l-~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      ..+ +.+++.+.+.. .+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.++.++++|++.++|++++|+
T Consensus         3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   81 (105)
T 3m9j_A            3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFK   81 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence            344 34566665543 477999999999999999999999999999976 999999999999999999999999999997


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHH
Q 015217          241 ADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +|. ...++.|. +.+.+.+++.+.
T Consensus        82 ~g~-~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           82 KGQ-KVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             TTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             CCe-EEEEEeCC-CHHHHHHHHHHh
Confidence            654 35678888 999999998775

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.59  E-value=3.7e-15  Score=118.72  Aligned_cols=98  Identities=17%  Similarity=0.393  Sum_probs=82.7

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEec----cccHhHHHhcCCCcccEEE
Q 015217           36 TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDA----NEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        36 ~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~----~~~~~~~~~~~i~~~P~~~  107 (411)
                      +.+++...+.. ++++++|+||++||++|+.+.+.+   .++++.+++ +.++.||+    +...+++++|+|.++|+++
T Consensus        18 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~   96 (134)
T 2fwh_A           18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGLPTIL   96 (134)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCCCEEE
Confidence            34566643332 488999999999999999999999   899988875 99999999    6678899999999999999


Q ss_pred             EE-eCCCCC--cccCCCCCcchhHHHHHHH
Q 015217          108 VF-VPGKPP--VDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~-~~g~~~--~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++ .+|+.+  .++.|..+.+.+.+++.+.
T Consensus        97 ~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           97 FFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             EECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             EECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            99 667665  6899999999999988754

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.59  E-value=1.9e-15  Score=110.12  Aligned_cols=82  Identities=28%  Similarity=0.468  Sum_probs=75.0

Q ss_pred             CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhH
Q 015217           49 GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA  128 (411)
Q Consensus        49 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~  128 (411)
                      .+.++.||++||++|+.+.|.++++++.+++++.++.+|++++++++++||+.++|++++  +|+.  ++.|..+.+.+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   78 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV   78 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence            578999999999999999999999999998889999999999999999999999999887  6653  889988999999


Q ss_pred             HHHHHH
Q 015217          129 EFALQQ  134 (411)
Q Consensus       129 ~~~~~~  134 (411)
                      +++.+.
T Consensus        79 ~~l~~~   84 (85)
T 1fo5_A           79 EAIKKR   84 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.59  E-value=2.7e-15  Score=119.30  Aligned_cols=112  Identities=14%  Similarity=0.253  Sum_probs=96.1

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCc--ccEEEEE
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRG--FPTIKVF  109 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~P~~~~~  109 (411)
                      +.+++.++|. .....+.+++|+||++ |++|+.+.|.++++++.+++++.|+.+|.+++++++..|||.+  +|+++++
T Consensus         8 v~~~t~~~f~-~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~   85 (133)
T 2djk_A            8 IGEIGPETYS-DYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             SEECCHHHHH-HHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE
T ss_pred             eeccChHHHH-HHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEE
Confidence            6789999998 5567788999999999 8999999999999999999999999999999999999999999  9999999


Q ss_pred             eC--CCCCcccC--CCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015217          110 VP--GKPPVDYQ--GARDVKPIAEFALQQIKALLKERLSGKATGGSSDK  154 (411)
Q Consensus       110 ~~--g~~~~~~~--g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (411)
                      .+  |+. .+..  |..+.+.|.+|+.+.+        .|+.....+|.
T Consensus        86 ~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l--------~Gkl~p~~kSe  125 (133)
T 2djk_A           86 EVAKNQK-FPFDQEKEITFEAIKAFVDDFV--------AGKIEPSIKSE  125 (133)
T ss_dssp             CTTTCCB-CCCCSSSCCCHHHHHHHHHHHH--------HTCCCCSSCCC
T ss_pred             ecCcCcc-cCCCCccccCHHHHHHHHHHHH--------cCCcCccccCC
Confidence            86  544 5654  8899899999988765        45555555554

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.59  E-value=5.3e-15  Score=116.48  Aligned_cols=97  Identities=15%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe--CCCchhHHhhCccccccEEEEEcCCCCCcccccCC
Q 015217          175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD--CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA  252 (411)
Q Consensus       175 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~--~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~  252 (411)
                      ...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||  ++.+..++++|++..+|++++|..++....++.|.
T Consensus        23 ~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~  102 (126)
T 2l57_A           23 AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGL  102 (126)
T ss_dssp             CCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESC
T ss_pred             HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCC
Confidence            4557799999999999999999999999999998889999999  99899999999999999999998555546678899


Q ss_pred             CCHHHHHHHHHHHhhhcCC
Q 015217          253 RTAGAIESFALEQLETNVA  271 (411)
Q Consensus       253 ~~~~~i~~fi~~~~~~~~~  271 (411)
                      .+.+.+.+++.+++.....
T Consensus       103 ~~~~~l~~~l~~~~~~~~~  121 (126)
T 2l57_A          103 MRKNNIETILNSLGVKEGH  121 (126)
T ss_dssp             CCHHHHHHHHHHHCCCCCC
T ss_pred             CCHHHHHHHHHHHhccccc
Confidence            9999999999998765443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.59  E-value=6.4e-15  Score=133.41  Aligned_cols=108  Identities=22%  Similarity=0.471  Sum_probs=96.4

Q ss_pred             CCCCcEEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEE
Q 015217          158 DSNESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      ..+.+..++..+|.+.+..+ +++++|.||++||++|+.+.|.|.++++.+.+++.|+.||++.++.++++|+|.++|++
T Consensus         5 ~~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             -CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CCCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            35679999999999966433 67999999999999999999999999999998999999999999999999999999999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          237 LVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|++|. ...++.|..+.+.+..|+...+
T Consensus        85 ~~~~~G~-~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQNGQ-PVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEETTE-EEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEECCE-EEEEeeCCCCHHHHHHHHHHHc
Confidence            9997654 3567899999999999998875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.58  E-value=1.2e-14  Score=110.22  Aligned_cols=100  Identities=24%  Similarity=0.547  Sum_probs=85.7

Q ss_pred             EEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217          163 IELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       163 ~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~  240 (411)
                      ..+++ +++.+.+.. .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.++.++++|++.++|++++|+
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK   80 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence            45666 778776654 57799999999999999999999999999987 6999999999999999999999999999998


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHH
Q 015217          241 ADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +|. ...++.| .+.+.+.+++.+.
T Consensus        81 ~g~-~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           81 DGK-EVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             TTE-EEEEEES-SCHHHHHHHHHHH
T ss_pred             CCc-EEEEEeC-CCHHHHHHHHHhh
Confidence            554 3566778 6888999998765

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.58  E-value=1.7e-14  Score=113.19  Aligned_cols=106  Identities=29%  Similarity=0.486  Sum_probs=89.9

Q ss_pred             CCCCcEEe-CccchHHHHhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccc
Q 015217          158 DSNESIEL-NSSNFDELVLK---SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGF  233 (411)
Q Consensus       158 ~~~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~  233 (411)
                      ....+..+ +.+++.+.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+..++++|+|..+
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~   92 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAM   92 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSS
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCcc
Confidence            45667888 55778877655   47899999999999999999999999999987 699999999999999999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |++++|++|. ...++.| .+.+.+.+++.+.+
T Consensus        93 Pt~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           93 PTFMFLKEGK-ILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             CEEEEEECCE-EEEEEeC-CCHHHHHHHHHHhc
Confidence            9999997554 3456777 58889999987753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.58  E-value=9.4e-15  Score=118.44  Aligned_cols=102  Identities=14%  Similarity=0.185  Sum_probs=89.3

Q ss_pred             eCccchHHHHh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC
Q 015217          165 LNSSNFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK  243 (411)
Q Consensus       165 l~~~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~  243 (411)
                      .+.++|.+.+. ..+++++|.||++||++|+.+.|.+.++++.+.+++.|+.||++.++.++++|+|.++|+++++++|.
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~   88 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQ   88 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTE
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECCe
Confidence            35677888765 56789999999999999999999999999999888999999999999999999999999999888765


Q ss_pred             CCc---------ccccC-CCCHHHHHHHHHHHhh
Q 015217          244 DSP---------IPYEG-ARTAGAIESFALEQLE  267 (411)
Q Consensus       244 ~~~---------~~y~g-~~~~~~i~~fi~~~~~  267 (411)
                      . .         .++.| ..+.+++.+++...+.
T Consensus        89 ~-v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           89 H-MKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             E-EEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             E-EEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            3 3         57788 7888999999887754

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.58  E-value=8.8e-15  Score=113.60  Aligned_cols=100  Identities=26%  Similarity=0.526  Sum_probs=87.3

Q ss_pred             cEEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..+++ +++.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+  .+.|+.+|++.+..++++|++.++|++++|
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIAI   92 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEEE
Confidence            788888 888887654 5779999999999999999999999999988  799999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++|. ...++.| .+.+.+.+++.+.
T Consensus        93 ~~G~-~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           93 KNGE-KVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHH
T ss_pred             eCCc-EEEEEeC-CCHHHHHHHHHHh
Confidence            7654 3556778 6888999998765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.57  E-value=2.3e-15  Score=109.68  Aligned_cols=82  Identities=22%  Similarity=0.352  Sum_probs=74.5

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHH
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAE  129 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~  129 (411)
                      +.+|.||++||++|+.+.|.++++++.+++++.++.+|++++++++++||+.++|++++  +|+.  ++.|..+.+.+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~   78 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence            46899999999999999999999999998889999999999999999999999999887  6654  8889889999999


Q ss_pred             HHHHHH
Q 015217          130 FALQQI  135 (411)
Q Consensus       130 ~~~~~~  135 (411)
                      ++.+.+
T Consensus        79 ~l~~~l   84 (85)
T 1nho_A           79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            987653

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.57  E-value=4e-15  Score=116.62  Aligned_cols=100  Identities=11%  Similarity=0.221  Sum_probs=82.6

Q ss_pred             cEEeCccchhHHHhc-CCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEec-------cccHhHHH
Q 015217           32 VVQLTPNNFKSKVLN-ANGVVLVEFYAP-------WCGHCQALTPIWEKAATVLKGVATVAALDA-------NEHQSLAQ   96 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~-~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~-------~~~~~~~~   96 (411)
                      +...+.++|.+.+.. ++++++|+||++       ||++|+.+.|.+.++++.+++++.|+.+|+       +.++.+++
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~   86 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   86 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHH
Confidence            456677888855544 589999999999       999999999999999999988899999999       78889999


Q ss_pred             hcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217           97 EYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        97 ~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      +|+|.++|++++|.++..+..+.| .+.+.+.+++.
T Consensus        87 ~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~  121 (123)
T 1wou_A           87 NLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  121 (123)
T ss_dssp             HHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHh
Confidence            999999999999987654444444 35566666654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.57  E-value=2.5e-15  Score=118.76  Aligned_cols=96  Identities=24%  Similarity=0.377  Sum_probs=83.8

Q ss_pred             cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcc
Q 015217          168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI  247 (411)
Q Consensus       168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~  247 (411)
                      .++.+.....+++++|.||++||++|+.+.+.+.++++.+.+++.|+.||++.++.++++|+|.++|++++|++|. ...
T Consensus        32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~-~~~  110 (128)
T 3ul3_B           32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKT-MLA  110 (128)
T ss_dssp             CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTE-EEE
T ss_pred             ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCE-EEE
Confidence            3333334567889999999999999999999999999999988999999999999999999999999999996544 467


Q ss_pred             cccCCCCHHHHHHHHHH
Q 015217          248 PYEGARTAGAIESFALE  264 (411)
Q Consensus       248 ~y~g~~~~~~i~~fi~~  264 (411)
                      ++.|..+.+++.+|+.+
T Consensus       111 ~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          111 RKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EESSCCCHHHHHHHHTT
T ss_pred             EecCCCCHHHHHHHHHh
Confidence            78899999999999864

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.56  E-value=2.5e-14  Score=112.28  Aligned_cols=105  Identities=22%  Similarity=0.437  Sum_probs=90.1

Q ss_pred             CCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~v~~~P~  235 (411)
                      ....+..++.+++.+.+.. .+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++ .+..++++|++.++|+
T Consensus        16 ~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~Pt   94 (124)
T 1faa_A           16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   94 (124)
T ss_dssp             TTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             cCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCeeeE
Confidence            4567899999999987754 577999999999999999999999999999874 999999998 6889999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++++++|. ...++.|.. .+++.+++.+.
T Consensus        95 ~~~~~~G~-~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           95 FKILKENS-VVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             EEEEETTE-EEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEEeCCc-EEEEEcCCC-HHHHHHHHHHh
Confidence            99987654 345677765 88899888765

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=112.28  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             CCcEEeCccchHHHHhcCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~--~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      ..+.+++.++|.+.+.+..+  +++|.||++||++|+.+.|.+.++|+.+. .+.|+.||++..   +++|+|..+||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEEE
Confidence            35788999999998766554  99999999999999999999999999986 599999998764   6899999999999


Q ss_pred             EEcCCCCCcccccCC-------CCHHHHHHHHHHH
Q 015217          238 VFGADKDSPIPYEGA-------RTAGAIESFALEQ  265 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~-------~~~~~i~~fi~~~  265 (411)
                      +|++|.. ..++.|.       ++.++|..++.++
T Consensus        79 ~fk~G~~-v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           79 VYKNGQI-EAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEETTEE-EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEECCEE-EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            9998753 4445553       4678888887664

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.56  E-value=9.5e-15  Score=121.70  Aligned_cols=106  Identities=13%  Similarity=0.258  Sum_probs=84.9

Q ss_pred             EEeCccchhHHH---hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhH------------
Q 015217           33 VQLTPNNFKSKV---LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSL------------   94 (411)
Q Consensus        33 ~~l~~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~------------   94 (411)
                      ...+..+|++.+   ..++++++|+||++||++|+.+.+.+   .++.+.+++++.++.||+++..++            
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchh
Confidence            345556666333   25789999999999999999985554   566666655799999999877655            


Q ss_pred             --------------HHhcCCCcccEEEEE-eCCCCCcccCCCCC-cchhHHHHHHHHHHH
Q 015217           95 --------------AQEYGIRGFPTIKVF-VPGKPPVDYQGARD-VKPIAEFALQQIKAL  138 (411)
Q Consensus        95 --------------~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~-~~~l~~~~~~~~~~~  138 (411)
                                    +++|++.++|+++++ .+|+.+.++.|..+ .+.+.+++.+.++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence                          789999999999999 56777888899998 999999998887654

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.56  E-value=3.1e-15  Score=128.80  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=87.1

Q ss_pred             CCCcEEe-CccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQL-TPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l-~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ...+.++ +.++|...+...  +++++|+||++||++|+.+.|.|.+++..+. .+.|+.||++ ++.++.+|+|.++|+
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PT  175 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCE
Confidence            3457788 888999666544  3899999999999999999999999999885 6999999999 888999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCc-------chhHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDV-------KPIAEFALQ  133 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~-------~~l~~~~~~  133 (411)
                      +++|.+|+.+.++.|..+.       +.|..++.+
T Consensus       176 l~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~  210 (217)
T 2trc_P          176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHH
Confidence            9999998877788887664       566666653

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.55  E-value=2e-14  Score=115.42  Aligned_cols=103  Identities=16%  Similarity=0.165  Sum_probs=84.9

Q ss_pred             CccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217          166 NSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD  244 (411)
Q Consensus       166 ~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~  244 (411)
                      +.++|.+.+.+ .+++++|.||++||++|+.+.|.+.++++.+.+++.|+.||++.++.++++|+|.++|++++|++|..
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcE
Confidence            45677766655 67899999999999999999999999999998889999999999999999999999999999986653


Q ss_pred             Ccc--------cccCCCC-HHHHHHHHHHHhhh
Q 015217          245 SPI--------PYEGART-AGAIESFALEQLET  268 (411)
Q Consensus       245 ~~~--------~y~g~~~-~~~i~~fi~~~~~~  268 (411)
                      ...        ...|..+ .+++.+++.+.+..
T Consensus        90 v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           90 IMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence            211        3455554 78888888776653

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.54  E-value=9.1e-15  Score=117.08  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=79.8

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCeE--EEEEeCCCchhHHhhCccccccEE
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNLKGKVK--LGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~~a~~~~~~~~--f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      .+..+++++|.+.+ ..++.++|+|++.|  |++|+.+.|.|.++++.+ +++.  |+.||++.+++++++|+|.++|++
T Consensus        18 ~~~~l~~~~f~~~i-~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~   95 (142)
T 2es7_A           18 GWQPVEASTVDDWI-KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPAT   95 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             cCcccccccHHHHH-HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence            68899999999975 45556788898877  999999999999999999 7788  999999999999999999999999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          237 LVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++|++|. ...++.|..+.+.|.+++.+.+.
T Consensus        96 ~~fk~G~-~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           96 LVFTDGK-LRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             EEESCC-----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEeCCE-EEEEEeCCCCHHHHHHHHHHHhc
Confidence            9997654 46788999999999999998875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.54  E-value=5.1e-14  Score=122.83  Aligned_cols=104  Identities=15%  Similarity=0.334  Sum_probs=92.6

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEe--CCCChhhhhhhHHHHHHHHHhc---CCeEEEEEeCCC-----chhHHhh
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFF--APWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCDS-----EKSLMSK  227 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~--~~~c~~c~~~~~~~~~~a~~~~---~~~~f~~v~~~~-----~~~l~~~  227 (411)
                      ..+.+..++..+|.+ +...+++++|.||  ++||+    +.|.|.++|..+.   +.+.|+.|||+.     ++++|++
T Consensus        14 ~~~~v~~Lt~~nF~~-vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~   88 (248)
T 2c0g_A           14 TCTGCVDLDELSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDR   88 (248)
T ss_dssp             -CTTCEECCTTTHHH-HHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHH
T ss_pred             CCCCcEECCHHHHHH-HHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHH
Confidence            456789999999999 4577789999999  99997    9999999999994   479999999998     8999999


Q ss_pred             Cccc--cccEEEEEcCCC-CCcccc--cCCCCHHHHHHHHHHHhh
Q 015217          228 FNVQ--GFPTILVFGADK-DSPIPY--EGARTAGAIESFALEQLE  267 (411)
Q Consensus       228 ~~v~--~~P~i~~~~~~~-~~~~~y--~g~~~~~~i~~fi~~~~~  267 (411)
                      |+|.  ++||+++|+ |. ..+..|  .|..+.+.|.+|+.+++.
T Consensus        89 ~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           89 YKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             hCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            9999  999999999 65 346788  999999999999999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.54  E-value=4.1e-14  Score=115.39  Aligned_cols=109  Identities=21%  Similarity=0.413  Sum_probs=90.6

Q ss_pred             CCCCcEEeCc-cchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNS-SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~-~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ....+..+++ ++|.+.+... +++++|.||++||++|+.+.+.|.++++.+. .+.|+.||++.++.++++|+|.++|+
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt   88 (153)
T 2wz9_A           10 AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPT   88 (153)
T ss_dssp             --CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             ccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCE
Confidence            3466888875 7787765443 7899999999999999999999999999984 69999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      +++|++| +...++.| .+.++|.+++.+.+...
T Consensus        89 ~~~~~~G-~~~~~~~G-~~~~~l~~~i~~~l~~~  120 (153)
T 2wz9_A           89 FLFFKNS-QKIDRLDG-AHAPELTKKVQRHASSG  120 (153)
T ss_dssp             EEEEETT-EEEEEEES-SCHHHHHHHHHHHSCTT
T ss_pred             EEEEECC-EEEEEEeC-CCHHHHHHHHHHHhccc
Confidence            9999944 33455677 57889999999987643

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.54  E-value=7.6e-15  Score=127.95  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             CCCcEEe-CccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQL-TPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l-~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ...+.++ +.++|...+..  +++++||+||++||++|+.+.|.|.+++..+.+ +.|+.||++. +.++.+|+|.++||
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PT  188 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPT  188 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSE
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCE
Confidence            3457788 78899965543  478999999999999999999999999999875 9999999987 77999999999999


Q ss_pred             EEEEeCCCCCcccCCCC
Q 015217          106 IKVFVPGKPPVDYQGAR  122 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~  122 (411)
                      +++|.+|+.+.++.|..
T Consensus       189 ll~~~~G~~v~~~vG~~  205 (245)
T 1a0r_P          189 LLVYKGGELLSNFISVT  205 (245)
T ss_dssp             EEEEETTEEEEEETTGG
T ss_pred             EEEEECCEEEEEEeCCc
Confidence            99999887766676653

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.54  E-value=4.2e-14  Score=108.85  Aligned_cols=104  Identities=25%  Similarity=0.452  Sum_probs=88.4

Q ss_pred             CCcEEe-CccchHHHHhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          160 NESIEL-NSSNFDELVLK---SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       160 ~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ..+..+ +.++|.+.+..   .+++++|.||++||++|+.+.+.+.++++.+. ++.|+.+|++.++.++++|++..+|+
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccE
Confidence            457777 55778877654   47799999999999999999999999999987 69999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +++|++|. ....+.| .+.+.+.+++.+.+
T Consensus        83 ~~~~~~G~-~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLKDGK-LVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTE-EEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEeCCE-EEEEEec-CCHHHHHHHHHHhh
Confidence            99997554 3456677 68889999998765

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.53  E-value=1.3e-12  Score=115.39  Aligned_cols=203  Identities=9%  Similarity=0.111  Sum_probs=157.5

Q ss_pred             cEEeCc-cchhHHHhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           32 VVQLTP-NNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l~~-~~f~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +..+++ ++++ .++.. +++++|-|+.++|   ....+.|.++|..+++.+.|+.+.   +.++++++++.+ |++++|
T Consensus         8 v~~l~s~~~~~-~~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~-p~ivlf   79 (250)
T 3ec3_A            8 SKEILTLKQVQ-EFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL-GKLVLM   79 (250)
T ss_dssp             SEECCCHHHHH-HHHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS-SEEEEE
T ss_pred             ceecCCHHHHH-HHHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC-CeEEEE
Confidence            566755 6676 55666 8899999999875   577889999999999999998874   678899999988 999999


Q ss_pred             eCC-------CCCcccC--CCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCe
Q 015217          110 VPG-------KPPVDYQ--GARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDL  180 (411)
Q Consensus       110 ~~g-------~~~~~~~--g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~  180 (411)
                      +++       .....|.  |..+.+.|.+|+...                       ..+.+.+++.+++...+ . ..+
T Consensus        80 k~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~-----------------------~~Plv~e~t~~n~~~~~-~-~~~  134 (250)
T 3ec3_A           80 QPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKH-----------------------ALPLVGHRKTSNDAKRY-S-KRP  134 (250)
T ss_dssp             CCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHH-----------------------SSCTEEEECTTTHHHHS-C-SSS
T ss_pred             ecchhhccccccceeccCCCCCCHHHHHHHHHHc-----------------------CCCceeecCccchhhhh-c-cCc
Confidence            853       2346777  478899999999876                       46889999999998854 3 556


Q ss_pred             EEEEEeC-CCC---hh-hhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccc--c-cEEEEEcCCCCCccccc-C
Q 015217          181 WIVEFFA-PWC---GH-CKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG--F-PTILVFGADKDSPIPYE-G  251 (411)
Q Consensus       181 ~lv~f~~-~~c---~~-c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~--~-P~i~~~~~~~~~~~~y~-g  251 (411)
                      .++.|+. +.+   .. ...+...+.++|+.|+ ++.|+.+|++.....++.||+..  . |.++++...+ ..+.+. +
T Consensus       135 l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~-~ky~~~~~  212 (250)
T 3ec3_A          135 LVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESG-KKFAMEPE  212 (250)
T ss_dssp             EEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTS-CEEECCCC
T ss_pred             cEEEEEecccccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCC-ceecCCcc
Confidence            6666664 222   22 3557889999999999 99999999988888889999874  3 5777765332 244455 6


Q ss_pred             CCCHHHHHHHHHHHhhhc
Q 015217          252 ARTAGAIESFALEQLETN  269 (411)
Q Consensus       252 ~~~~~~i~~fi~~~~~~~  269 (411)
                      .++.++|.+|+...+...
T Consensus       213 ~~t~~~i~~Fv~~~~~Gk  230 (250)
T 3ec3_A          213 EFDSDALREFVMAFKKGK  230 (250)
T ss_dssp             SCCHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHCCC
Confidence            789999999999988755

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.53  E-value=3.4e-14  Score=110.40  Aligned_cols=106  Identities=19%  Similarity=0.368  Sum_probs=87.8

Q ss_pred             CCcEEe--CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIEL--NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l--~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      +.+..+  +..+|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+ +.+.|+.||++.+..++++|+|.++|+++
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALF   81 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            346777  567787666667889999999999999999999999999999 77999999999999999999999999999


Q ss_pred             EEcCC---CCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGAD---KDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~---~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|+++   +....++.|.. .++|...+.++..
T Consensus        82 ~~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~~~  113 (118)
T 2f51_A           82 FVKKEGNEIKTLDQFVGAD-VSRIKADIEKFKH  113 (118)
T ss_dssp             EEEEETTEEEEEEEEESCC-HHHHHHHHHHHC-
T ss_pred             EEeCCCCcceEEEeecCCC-HHHHHHHHHHhhh
Confidence            99761   33345677754 4678888888753

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.53  E-value=5.4e-14  Score=109.15  Aligned_cols=106  Identities=24%  Similarity=0.442  Sum_probs=89.9

Q ss_pred             CCCcEEeC-ccchHHHHhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217          159 SNESIELN-SSNFDELVLK---SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       159 ~~~v~~l~-~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ...+..++ ..+|.+.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+..++++|++..+|
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~P   83 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMP   83 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBS
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCc
Confidence            45677774 5778776654   37899999999999999999999999999987 6999999999999999999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++++|++|. ....+.| .+.+.+.+++.+.+.
T Consensus        84 t~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           84 TFLFIKDGE-KVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             EEEEEETTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCe-EEEEecC-CCHHHHHHHHHHHhc
Confidence            999997554 3456677 588999999988764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.29  E-value=7.2e-16  Score=117.31  Aligned_cols=103  Identities=31%  Similarity=0.599  Sum_probs=90.7

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..++..++.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+++.|+.+|++.+..++++|++..+|++++|++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN   82 (106)
Confidence            56788888887766778899999999999999999999999999998889999999999999999999999999999954


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      | .....+.|..+.+.+.+++.+.
T Consensus        83 g-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           83 G-QVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            4 4466788988888998888654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.52  E-value=2.8e-14  Score=111.42  Aligned_cols=106  Identities=20%  Similarity=0.480  Sum_probs=90.9

Q ss_pred             CCCCcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ....+..+++ ++|.+.+ ..+++++|.||++||++|+.+.+.+.++++.+.++ +.|+.+|++.+..++++|++..+|+
T Consensus        13 ~~~~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt   91 (121)
T 2j23_A           13 PRGSVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPT   91 (121)
T ss_dssp             CCCCEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCcceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccE
Confidence            4566777777 6777754 77789999999999999999999999999998876 9999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +++|++|. ...++.|. +.+++.+|+.+.+
T Consensus        92 ~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           92 FVFFKNGQ-KIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEETTE-EEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEECCe-EEeeEcCC-CHHHHHHHHHHhh
Confidence            99997554 35667887 8999999988754

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.52  E-value=8.8e-15  Score=116.68  Aligned_cols=105  Identities=19%  Similarity=0.248  Sum_probs=90.3

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC---------CCchhHHhhCc
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC---------DSEKSLMSKFN  229 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~---------~~~~~l~~~~~  229 (411)
                      ...+..++..+|.+.+..   +++|.||++||++|+.+.|.+.++++.++  +.|+.||+         +.+..++++|+
T Consensus        15 ~~~v~~l~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~   89 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAG   89 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             cCceeecCHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcC
Confidence            356888999999987643   99999999999999999999999999987  89999999         77888999999


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      |.++|++++|++|. ...++.|..+.+.+..++.+.+...
T Consensus        90 v~~~Pt~~~~~~G~-~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           90 VEGTPTLVFYKEGR-IVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             CCSSSEEEEEETTE-EEEEEESCCCHHHHHHHHHHHC---
T ss_pred             CceeCeEEEEcCCE-EEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            99999999999554 4678899999999999998887543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.52  E-value=9.9e-14  Score=111.13  Aligned_cols=108  Identities=15%  Similarity=0.332  Sum_probs=90.7

Q ss_pred             CCCCcEEeC-ccchHHHHh---cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccc
Q 015217          158 DSNESIELN-SSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGF  233 (411)
Q Consensus       158 ~~~~v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~  233 (411)
                      ....+..++ .++|.+.+.   ..+++++|.||++||++|+.+.+.+.++++.+. .+.|+.||++.+..++++|+|.++
T Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~  100 (139)
T 3d22_A           22 AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKAT  100 (139)
T ss_dssp             SCTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEE
T ss_pred             cCCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCcc
Confidence            345566675 678887664   347899999999999999999999999999985 699999999999999999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      |+++++++|. ....+.|. +.+.+.+++.+.+..
T Consensus       101 Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          101 PTFFFLRDGQ-QVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             SEEEEEETTE-EEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCe-EEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9999996554 35667787 889999999888753

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.52  E-value=1.6e-14  Score=108.20  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=78.4

Q ss_pred             cEEeC-ccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCc-ccE
Q 015217           32 VVQLT-PNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRG-FPT  105 (411)
Q Consensus        32 ~~~l~-~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~-~P~  105 (411)
                      ...++ .++|+ .+++++++++|+|+|+||++|+.+.|.+++++..  +++.++.+|.++.++    ++.++||.+ .|+
T Consensus         8 ~~~i~s~e~f~-~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq   84 (112)
T 3iv4_A            8 AIKLSSIDQFE-QVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQ   84 (112)
T ss_dssp             EEECCSHHHHH-HHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSE
T ss_pred             eeecCCHHHHH-HHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCe
Confidence            45554 46788 5666799999999999999999999999999984  578999999999976    899999995 999


Q ss_pred             EEEEeCCCCCcc-cCCCCCcchhHHH
Q 015217          106 IKVFVPGKPPVD-YQGARDVKPIAEF  130 (411)
Q Consensus       106 ~~~~~~g~~~~~-~~g~~~~~~l~~~  130 (411)
                      +++|++|+.+.+ -.+..+.+.|.+.
T Consensus        85 ~il~k~G~~v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           85 AFYFVNGEMVWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             EEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred             EEEEECCEEEEEeeccccCHHHHHHh
Confidence            999999987554 3456666655543

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.52  E-value=1.3e-13  Score=109.39  Aligned_cols=109  Identities=17%  Similarity=0.285  Sum_probs=94.5

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccc--ccEE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG--FPTI  236 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~--~P~i  236 (411)
                      .+.+.+++..+|.+. .....+++|.||++ |++|+.+.+.+.++|+.|++++.|+.+|.+.++.++++|||.+  +|++
T Consensus         5 ~plv~~~t~~~f~~~-~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            5 SPLIGEIGPETYSDY-MSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CCCSEECCHHHHHHH-HHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             cCceeccChHHHHHH-hcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            355889999999886 56677899999999 8999999999999999999999999999999999999999999  9999


Q ss_pred             EEEcCCCCCccccc--CCCCHHHHHHHHHHHhhhc
Q 015217          237 LVFGADKDSPIPYE--GARTAGAIESFALEQLETN  269 (411)
Q Consensus       237 ~~~~~~~~~~~~y~--g~~~~~~i~~fi~~~~~~~  269 (411)
                      ++|+.++...+...  |..+.+.|.+|+.+.+...
T Consensus        83 ~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gk  117 (133)
T 2djk_A           83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEEecCcCcccCCCCccccCHHHHHHHHHHHHcCC
Confidence            99986222245655  8999999999999888643

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.27  E-value=1e-15  Score=121.32  Aligned_cols=97  Identities=22%  Similarity=0.278  Sum_probs=83.9

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEE--e
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVF--V  110 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~--~  110 (411)
                      +.+. ....++++++|+||++||++|+.+.|.+   .++++.+++++.++.||++  +...++++|+|.++|++++|  .
T Consensus        10 ~~~~-~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~   88 (130)
T 2lst_A           10 EALA-LAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK   88 (130)
Confidence            3444 4556789999999999999999999999   8999888888999999995  56889999999999999999  4


Q ss_pred             CCCC--CcccCCCCCcchhHHHHHHHH
Q 015217          111 PGKP--PVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       111 ~g~~--~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+.  +.++.|..+.+.+.+++.+.+
T Consensus        89 ~G~~~~~~~~~G~~~~~~l~~~l~~~~  115 (130)
T 2lst_A           89 AGAWEEVGRLFGSRPRAEFLKELRQVC  115 (130)
Confidence            5776  778999999999999998765

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.52  E-value=2.8e-14  Score=109.41  Aligned_cols=101  Identities=17%  Similarity=0.270  Sum_probs=86.7

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..++.++| +.+ ..+++++|.||++||++|+.+.+.+.+++..+. .+.|+.+|++.+..++++|++.++|++++|++
T Consensus         5 ~~~~~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   81 (110)
T 2l6c_A            5 RDITTEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRD   81 (110)
T ss_dssp             SBCGGGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred             eecCCHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence            455677888 544 556889999999999999999999999999876 69999999999999999999999999999965


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |. ...++.|..+.++|.+++....
T Consensus        82 G~-~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           82 GK-VAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             SS-EEEEEESCCCHHHHHHHHHTC-
T ss_pred             CE-EEEEEcCCCCHHHHHHHHHHHh
Confidence            54 4667889899999999987764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.51  E-value=1.2e-14  Score=110.43  Aligned_cols=92  Identities=14%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEecccc--HhHHHhcCCCcccEEEEEeCCCCCcccCCC
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEH--QSLAQEYGIRGFPTIKVFVPGKPPVDYQGA  121 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~--~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~  121 (411)
                      .+.+.+||+||++||++|+.+.+.+........  ..+.+..||.+.+  ..++.+|+|.++||+++|.+|+.+.+..|.
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECC
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCC
Confidence            356789999999999999999875443322110  1267788888865  579999999999999999999989999999


Q ss_pred             CCcchhHHHHHHHHHH
Q 015217          122 RDVKPIAEFALQQIKA  137 (411)
Q Consensus       122 ~~~~~l~~~~~~~~~~  137 (411)
                      .+.+.+..|+.+.+..
T Consensus        96 ~~~~~f~~~L~~~l~~  111 (116)
T 3dml_A           96 PGEDFFWPMLARLIGQ  111 (116)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999887643

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.50  E-value=1.9e-13  Score=118.89  Aligned_cols=103  Identities=22%  Similarity=0.461  Sum_probs=91.8

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeC--CCChhhhhhhHHHHHHHHHhcC--CeEEEEEe-----CCCchhHHhhCc
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFA--PWCGHCKKLAPEWKKAANNLKG--KVKLGHVD-----CDSEKSLMSKFN  229 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~--~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~-----~~~~~~l~~~~~  229 (411)
                      ...+..|+..+|.+. ...+++++|.||+  +||+    +.|.|.++|..+.+  .+.|+.||     |+.++.+|++|+
T Consensus         4 ~~~v~~Lt~~nF~~~-i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~   78 (240)
T 2qc7_A            4 TKGALPLDTVTFYKV-IPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK   78 (240)
T ss_dssp             CTTCEECCTTHHHHH-GGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT
T ss_pred             CCCceECCHHHHHHH-HcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC
Confidence            456899999999995 4677899999999  9998    99999999999964  69999999     555899999999


Q ss_pred             cc--cccEEEEEcCCC-CCcccccCCCCHHHHHHHHHHHh
Q 015217          230 VQ--GFPTILVFGADK-DSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       230 v~--~~P~i~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |.  ++||+++|++|. ..+..|.|..+.+.|.+|+.++.
T Consensus        79 V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           79 LDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            99  999999998876 45789999999999999999885

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.49  E-value=2.7e-14  Score=110.99  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=83.6

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC----CchhHHhhCcccccc
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD----SEKSLMSKFNVQGFP  234 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~----~~~~l~~~~~v~~~P  234 (411)
                      ...+..++..++.+.+ ..+++++|.||++||++|+.+.|.+.++++.+...+.++.++..    ....++++|+|.++|
T Consensus        11 ~~~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~P   89 (118)
T 1zma_A           11 IKDLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP   89 (118)
T ss_dssp             TTTSEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             HhhhhcCCHHHHHHHH-hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCC
Confidence            3568889999999865 55679999999999999999999999999998766666543321    224788999999999


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      ++++|++|. ...++.|..+.+.|.+|+.
T Consensus        90 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           90 GFVHITDGQ-INVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             eEEEEECCE-EEEEecCCCCHHHHHHHhh
Confidence            999997654 3567889999999998874

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.49  E-value=4.4e-14  Score=112.22  Aligned_cols=108  Identities=22%  Similarity=0.345  Sum_probs=88.5

Q ss_pred             CCCCCcEEeCc-cchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217          157 SDSNESIELNS-SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       157 ~~~~~v~~l~~-~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      +....+..+++ +++.+.+... +++++|.||++||++|+.+.+.|.++++.+  .+.|+.||++.+..++++|+|.++|
T Consensus        17 ~~~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           17 QGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             ETTEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cCCccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCC
Confidence            45566888886 6677655443 469999999999999999999999998887  5899999999999999999999999


Q ss_pred             EEEEEc--CCC-CCcccccCCCCHHHHHHHHHHHhh
Q 015217          235 TILVFG--ADK-DSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       235 ~i~~~~--~~~-~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++++|+  ++. ....++.|. +.++|.+++.+.+.
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            999995  443 135567786 88999999988753

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.49  E-value=2.4e-13  Score=109.86  Aligned_cols=102  Identities=16%  Similarity=0.227  Sum_probs=87.2

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec------------------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA------------------------   88 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~------------------------   88 (411)
                      ..++++.+. ....++++++|.||++||++|+...|.+.++.+.+++++.++.|++                        
T Consensus        15 ~~~~g~~~~-~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (148)
T 2b5x_A           15 AWLNGEVTR-EQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (148)
T ss_dssp             EEESCCCCH-HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             ccccCcccc-hhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcc
Confidence            567777777 4445789999999999999999999999999999987799999985                        


Q ss_pred             ---cccHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           89 ---NEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        89 ---~~~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                         +.+..++++|++.++|+++++ ++|+...++.|..+.+.+.+++.+.+
T Consensus        94 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  144 (148)
T 2b5x_A           94 IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL  144 (148)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred             eEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence               445689999999999999999 56666777889889899999888775

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=3e-13  Score=107.61  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=86.7

Q ss_pred             CCCCcEEeCccchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ....+..++..+|.+.+....  ++++|.||++||++|+.+.+.|.++++.+. .+.|+.||++...   ++|+|..+|+
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt   83 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPT   83 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSE
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCE
Confidence            346688899999998776543  589999999999999999999999999985 5999999988764   7899999999


Q ss_pred             EEEEcCCCCCcccccCCC-------CHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGAR-------TAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~-------~~~~i~~fi~~~~  266 (411)
                      +++|++|. ...++.|..       +.+.|..++.++-
T Consensus        84 ~~~~~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           84 IFVYKNGQ-IEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEEESSSS-CSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEEECCE-EEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            99998654 355666754       7888999988764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.48  E-value=1.6e-14  Score=119.07  Aligned_cols=100  Identities=14%  Similarity=0.290  Sum_probs=81.8

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh-HHHhcCC--CcccEEEEE-eCCC
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS-LAQEYGI--RGFPTIKVF-VPGK  113 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~-~~~~~~i--~~~P~~~~~-~~g~  113 (411)
                      +.+. ....++++++|.||++||++|+.+.|.|.++++.....+.|+.||++.+.. ++.+|++  .++|++++| .+|+
T Consensus        37 ~~~~-~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A           37 DGKK-EAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK  115 (164)
T ss_dssp             HHHH-HHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred             HHHH-HHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCC
Confidence            4455 445678999999999999999999999999877665557788899988877 8899998  569999999 6787


Q ss_pred             CCcccCCC----------CCcchhHHHHHHHHHHH
Q 015217          114 PPVDYQGA----------RDVKPIAEFALQQIKAL  138 (411)
Q Consensus       114 ~~~~~~g~----------~~~~~l~~~~~~~~~~~  138 (411)
                      .+.++.|.          .+.+.+.+++.+.+...
T Consensus       116 ~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~  150 (164)
T 1sen_A          116 VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL  150 (164)
T ss_dssp             BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence            77778774          67888888888877554

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=1.2e-13  Score=109.34  Aligned_cols=107  Identities=22%  Similarity=0.392  Sum_probs=89.1

Q ss_pred             cEEeCccchHHHHh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCC--CchhHHhhCccccc
Q 015217          162 SIELNSSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQGF  233 (411)
Q Consensus       162 v~~l~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~~  233 (411)
                      ...++..++.+.+.   ..+++++|.||++||++|+.+.+.+   ..+++.+...+.++.+|++  ....++++|++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~   87 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY   87 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSS
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCC
Confidence            44557777877653   3578999999999999999999999   7788877777999999998  57789999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      |++++|..+++...++.|..+.+.+.+++.+.+..
T Consensus        88 Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           88 PTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             CEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            99999955555466788999999999999988753

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.47  E-value=6.4e-14  Score=114.32  Aligned_cols=89  Identities=16%  Similarity=0.273  Sum_probs=76.4

Q ss_pred             cCCCeEEEEEE-CCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecccc-----------HhHHHhcCCCcccEEEEE-
Q 015217           46 NANGVVLVEFY-APWCGHCQALTPIW---EKAATVLKGVATVAALDANEH-----------QSLAQEYGIRGFPTIKVF-  109 (411)
Q Consensus        46 ~~~~~~~v~f~-~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~-----------~~~~~~~~i~~~P~~~~~-  109 (411)
                      .++++++|+|| ++||++|+.+.|.+   .++.+....++.++.+|++..           .+++++|+|.++|+++++ 
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d  124 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID  124 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence            46899999999 99999999999999   777776656799999999865           389999999999999999 


Q ss_pred             eCCCCCcccCCCC--CcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGAR--DVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~--~~~~l~~~~~~~~  135 (411)
                      .+|+.+.++ |..  +.+.+.+++.+.+
T Consensus       125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          125 AEGKQLARM-GFEPGGGAAYVSKVKSAL  151 (154)
T ss_dssp             TTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence            567767778 888  7888888887765

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.47  E-value=1.1e-13  Score=110.11  Aligned_cols=101  Identities=15%  Similarity=0.267  Sum_probs=83.0

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---------------------   90 (411)
                      +..++++.+. ....++++++|.||++||++|+...+.+.++.+.++ ++.++.|+++.                     
T Consensus         9 l~~~~g~~~~-l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   86 (136)
T 1lu4_A            9 ATTLSGAPFD-GASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (136)
T ss_dssp             EEBTTSCEEE-GGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             eecCCCCeec-HHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEEC
Confidence            3344555555 333368899999999999999999999999999998 79999999987                     


Q ss_pred             -cHhHHHhcCCCcccEEEEEe-CCCCCcccC---CCCCcchhHHHHHHHH
Q 015217           91 -HQSLAQEYGIRGFPTIKVFV-PGKPPVDYQ---GARDVKPIAEFALQQI  135 (411)
Q Consensus        91 -~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~---g~~~~~~l~~~~~~~~  135 (411)
                       +..++++|++.++|++++++ +|+.. ++.   |..+.+.+.+++.+.+
T Consensus        87 ~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           87 ADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence             57899999999999999995 56545 888   9999989988887653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.47  E-value=2.5e-13  Score=112.10  Aligned_cols=110  Identities=21%  Similarity=0.315  Sum_probs=90.4

Q ss_pred             cCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccHhHHHhc------
Q 015217           26 YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQSLAQEY------   98 (411)
Q Consensus        26 ~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~------   98 (411)
                      ..++..+..++++.+. ....++++++|.||++||++|+...|.+.++.+.+++. +.++.|+++...+.+++|      
T Consensus        13 ~~p~~~l~~~~g~~~~-l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~   91 (165)
T 3or5_A           13 PAPSFSGVTVDGKPFS-SASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGI   91 (165)
T ss_dssp             BCCCCEEECTTSCEEE-GGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTC
T ss_pred             CCCCceeeCCCCCEec-hhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCC
Confidence            3344555566666666 33346899999999999999999999999999999874 999999999877777766      


Q ss_pred             ---------------------CCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           99 ---------------------GIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        99 ---------------------~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                                           ++.++|+++++. +|+...++.|..+.+.+.+++.+.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A           92 IYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             CSCEEECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred             CCceEecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                                 899999999984 56667788899999999999988763

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.47  E-value=9e-15  Score=110.94  Aligned_cols=76  Identities=22%  Similarity=0.430  Sum_probs=64.3

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc------ccHhHHHhcCCCcccEEEEEeCCCCCcccC
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQ  119 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~  119 (411)
                      ..+++++|.||++||++|+.+.|.|+++++.++      .|||+      +++++|++|+|.++|++++  +|+   .|.
T Consensus        10 ~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~---~~~   78 (106)
T 3kp8_A           10 HLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---TYT   78 (106)
T ss_dssp             HHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE---EEE
T ss_pred             hcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE---Eec
Confidence            346778999999999999999999999987664      56666      6788999999999999776  664   488


Q ss_pred             CCCCcchhHHHHH
Q 015217          120 GARDVKPIAEFAL  132 (411)
Q Consensus       120 g~~~~~~l~~~~~  132 (411)
                      |..+.+.|.+|+.
T Consensus        79 G~~~~~~l~~~~~   91 (106)
T 3kp8_A           79 GVRSLEALAVASG   91 (106)
T ss_dssp             SCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHhC
Confidence            9999999988874

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.45  E-value=2.7e-13  Score=107.83  Aligned_cols=101  Identities=17%  Similarity=0.285  Sum_probs=83.4

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---------------------   90 (411)
                      +..++++.+. ....++++++|.||++||++|+...+.+.++.+.++ ++.++.|+++.                     
T Consensus        10 ~~~~~g~~~~-l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   87 (136)
T 1zzo_A           10 AKTLDGHDFH-GESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (136)
T ss_dssp             EEBTTSCEEE-GGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             cccCCCCEee-HHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEE
Confidence            4455555555 333468899999999999999999999999999988 78999999853                     


Q ss_pred             --cHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           91 --HQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        91 --~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                        +..++++|++.++|++++++ +|+.. ++.|..+.+.+.+++.+.+
T Consensus        88 d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           88 DTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             cCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence              56789999999999999996 55545 8999999999988887764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.44  E-value=2.2e-13  Score=98.98  Aligned_cols=82  Identities=20%  Similarity=0.338  Sum_probs=74.0

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                      .+.++.||++||++|+.+.+.+.++++.+.+++.+..+|++.+..++++||+.++|++++  +|.  . ++.|..+.+.+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~--~-~~~G~~~~~~l   77 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGD--V-EFIGAPTKEAL   77 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTE--E-ECCSSSSSHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCE--E-eeecCCCHHHH
Confidence            467999999999999999999999999999889999999999999999999999999998  333  3 78898899999


Q ss_pred             HHHHHHH
Q 015217          259 ESFALEQ  265 (411)
Q Consensus       259 ~~fi~~~  265 (411)
                      .+++.+.
T Consensus        78 ~~~l~~~   84 (85)
T 1fo5_A           78 VEAIKKR   84 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.44  E-value=2.8e-13  Score=116.54  Aligned_cols=104  Identities=20%  Similarity=0.271  Sum_probs=87.8

Q ss_pred             CCCcEEe-CccchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIEL-NSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l-~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ...+..+ +..+|.+.+....  ++++|.||++||++|+.+.+.|.+++..+. .+.|+.||++ ++.++++|+|..+|+
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PT  175 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCE
Confidence            4568888 8889998776554  799999999999999999999999999985 7999999998 778999999999999


Q ss_pred             EEEEcCCCCCcccccCCCC-------HHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGART-------AGAIESFALEQ  265 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~-------~~~i~~fi~~~  265 (411)
                      +++|++|. ....+.|..+       .+.|..|+.++
T Consensus       176 l~~~~~G~-~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          176 LLVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCE-EEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            99998654 3556777554       38888888765

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.43  E-value=8e-13  Score=105.09  Aligned_cols=106  Identities=17%  Similarity=0.371  Sum_probs=84.6

Q ss_pred             CCCcEEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeC----CCchhHHhhCc
Q 015217          159 SNESIELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDC----DSEKSLMSKFN  229 (411)
Q Consensus       159 ~~~v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~----~~~~~l~~~~~  229 (411)
                      .+.+..+++ .++...+.+ .+++++|.||++||++|+.+.+.+   .++++.+.+ +.++.||+    +....++++|+
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~   88 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN   88 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcC
Confidence            344554544 555555543 367999999999999999999999   899999875 99999999    44668999999


Q ss_pred             cccccEEEEEcCCCCCc--ccccCCCCHHHHHHHHHHH
Q 015217          230 VQGFPTILVFGADKDSP--IPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~--~~y~g~~~~~~i~~fi~~~  265 (411)
                      |.++|++++|..+++..  .++.|..+.++|.+++.+.
T Consensus        89 v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           89 VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            99999999995444433  5789999999999998765

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.43  E-value=8.6e-14  Score=131.50  Aligned_cols=99  Identities=23%  Similarity=0.413  Sum_probs=84.9

Q ss_pred             CCCCcEEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--------CeEEEEEeCCCchhHHhhC
Q 015217          158 DSNESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSEKSLMSKF  228 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~~~l~~~~  228 (411)
                      ....+..++..+|.+.+... .++++|.||++||++|+.+.|.|.++++.+..        .+.|+.||++.+..++++|
T Consensus        21 ~~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y  100 (470)
T 3qcp_A           21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY  100 (470)
T ss_dssp             TCTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT
T ss_pred             CCCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc
Confidence            45779999999999876433 46899999999999999999999999999972        5999999999999999999


Q ss_pred             ccccccEEEEEcCC-CCCcccccCCCCHH
Q 015217          229 NVQGFPTILVFGAD-KDSPIPYEGARTAG  256 (411)
Q Consensus       229 ~v~~~P~i~~~~~~-~~~~~~y~g~~~~~  256 (411)
                      +|..+|++++|+++ ......|.|..+.+
T Consensus       101 ~V~~~PTlilf~~gg~~~~~~y~G~r~~e  129 (470)
T 3qcp_A          101 DINFVPRLFFFYPRDSCRSNEECGTSSLE  129 (470)
T ss_dssp             TCCSSCEEEEEEESSCCCTTSCCCCCCEE
T ss_pred             CCCccCeEEEEECCCceEEEEeeCCCCHH
Confidence            99999999999654 34577888875544

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.43  E-value=2.2e-13  Score=109.68  Aligned_cols=97  Identities=14%  Similarity=0.304  Sum_probs=80.0

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEeccc---------------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANE---------------------   90 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~---------------------   90 (411)
                      ..++.+.+. ... ++++++|.||++||++|+.+.+.+.++.+.++ .++.++.|+++.                     
T Consensus        21 ~~~~g~~~~-l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   98 (145)
T 3erw_A           21 KTIEGEDIS-IPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPI   98 (145)
T ss_dssp             ECTTSCEEE-ESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCE
T ss_pred             ecCCCCEEe-HHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeE
Confidence            334444444 222 78899999999999999999999999999998 479999999864                     


Q ss_pred             ----cHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHH
Q 015217           91 ----HQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        91 ----~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                          +..+++.|++.++|+++++ ++|+.+.++.|..+.+.+.+++
T Consensus        99 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           99 VLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             EECSSSHHHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             EEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence                5689999999999999999 5566677889999988887775

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.43  E-value=4e-13  Score=106.67  Aligned_cols=90  Identities=19%  Similarity=0.393  Sum_probs=78.5

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHH--HHHHHhcCCeEEEEEeC---CCchhHHhhCcc---ccccEEEEEcCCCCCcc
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWK--KAANNLKGKVKLGHVDC---DSEKSLMSKFNV---QGFPTILVFGADKDSPI  247 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~--~~a~~~~~~~~f~~v~~---~~~~~l~~~~~v---~~~P~i~~~~~~~~~~~  247 (411)
                      ..+++++|.||++||++|+.+.+.|.  +++..+.+++.++.||+   +.+..++++|+|   .++|++++|..+++...
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~  106 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY  106 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence            45789999999999999999999999  99999977899999999   889999999999   99999999955555456


Q ss_pred             cccC-------CCCHHHHHHHHHHH
Q 015217          248 PYEG-------ARTAGAIESFALEQ  265 (411)
Q Consensus       248 ~y~g-------~~~~~~i~~fi~~~  265 (411)
                      .+.|       ..+.+++.+|+.+.
T Consensus       107 ~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          107 TTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             ECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EecCCcccccccCCHHHHHHHHHHh
Confidence            6666       56888999998764

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.43  E-value=7.6e-14  Score=110.35  Aligned_cols=108  Identities=23%  Similarity=0.457  Sum_probs=91.0

Q ss_pred             CCCCcEEeC-ccchHHHHhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccc
Q 015217          158 DSNESIELN-SSNFDELVLK---SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGF  233 (411)
Q Consensus       158 ~~~~v~~l~-~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~  233 (411)
                      ....+..++ ..++.+.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.||++.+..++++|++..+
T Consensus        12 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~   90 (130)
T 1wmj_A           12 EEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAM   90 (130)
T ss_dssp             SCSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSS
T ss_pred             cCcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCcc
Confidence            445677774 5778877655   47799999999999999999999999999987 699999999999999999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      |++++|++|. ....+.| .+.+.+.+++.+.+..
T Consensus        91 Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           91 PTFLFIKDGA-EADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             CCCCBCTTTT-CCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             ceEEEEeCCe-EEEEEeC-CCHHHHHHHHHHHHhc
Confidence            9999996554 3566777 5788999999888753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.43  E-value=2.9e-13  Score=98.33  Aligned_cols=82  Identities=15%  Similarity=0.271  Sum_probs=73.7

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHH
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIE  259 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~  259 (411)
                      ..++.||++||++|+.+.+.+.++++.+.+++.+..+|++.+..++++||+.++|++++  +|.  . ++.|..+.+.+.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~--~-~~~G~~~~~~l~   77 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--V-RFVGAPSREELF   77 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--E-EEECSSCCHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCE--E-EEccCCCHHHHH
Confidence            45899999999999999999999999999889999999999999999999999999998  333  3 788988999999


Q ss_pred             HHHHHHh
Q 015217          260 SFALEQL  266 (411)
Q Consensus       260 ~fi~~~~  266 (411)
                      +++.+.+
T Consensus        78 ~~l~~~l   84 (85)
T 1nho_A           78 EAINDEM   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.41  E-value=5.9e-13  Score=104.13  Aligned_cols=101  Identities=17%  Similarity=0.298  Sum_probs=83.7

Q ss_pred             CcEEeCccchHHHHhc-CCCeEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCCeEEEEEeC-------CCchhHH
Q 015217          161 ESIELNSSNFDELVLK-SKDLWIVEFFAP-------WCGHCKKLAPEWKKAANNLKGKVKLGHVDC-------DSEKSLM  225 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~-~~~~~lv~f~~~-------~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-------~~~~~l~  225 (411)
                      .+...+.++|.+.+.. .+++++|.||++       ||++|+.+.|.+.++++.+.+++.|+.||+       +.+..++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~   85 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   85 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence            4566777888887655 478999999999       999999999999999999988899999999       7788999


Q ss_pred             hhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       226 ~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      ++|+|.++|++++|+++. ....+.| .+.+.|.+|+.
T Consensus        86 ~~~~i~~~Pt~~~~~~~~-~~~g~~~-~~~~~l~~~i~  121 (123)
T 1wou_A           86 KNLKVTAVPTLLKYGTPQ-KLVESEC-LQANLVEMLFS  121 (123)
T ss_dssp             HHHCCCSSSEEEETTSSC-EEEGGGG-GCHHHHHHHHH
T ss_pred             HHCCCCeeCEEEEEcCCc-eEecccc-CCHHHHHHHHh
Confidence            999999999999997633 2333333 56778888775

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.40  E-value=6.1e-13  Score=109.36  Aligned_cols=104  Identities=17%  Similarity=0.266  Sum_probs=79.9

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEeccccHhHHHhc--------CC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDANEHQSLAQEY--------GI  100 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~~~~~~~~~~--------~i  100 (411)
                      ....+++.|. .+..++++++|.||++||++|+.+.+. +  .++++.+.+++.+++||.++.+++.+.|        |+
T Consensus        24 W~~~~~ea~~-~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv  102 (173)
T 3ira_A           24 WYPWGEEAFE-KARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGR  102 (173)
T ss_dssp             CBCSSHHHHH-HHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHH-HHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCC
Confidence            3445567777 667789999999999999999999993 3  5777777778999999999999999888        99


Q ss_pred             CcccEEEEEe-CCCCCcc--c---CCCCCcchhHHHHHHHHH
Q 015217          101 RGFPTIKVFV-PGKPPVD--Y---QGARDVKPIAEFALQQIK  136 (411)
Q Consensus       101 ~~~P~~~~~~-~g~~~~~--~---~g~~~~~~l~~~~~~~~~  136 (411)
                      .++|+++++. +|+.+..  |   .+..+.+.+.+++.+..+
T Consensus       103 ~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~  144 (173)
T 3ira_A          103 GGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKE  144 (173)
T ss_dssp             CCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHH
T ss_pred             CCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHH
Confidence            9999999997 5654332  2   123345667777765543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.40  E-value=9.9e-13  Score=114.60  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             CCCcEEe-CccchHHHHhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIEL-NSSNFDELVLKS--KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l-~~~~~~~~~~~~--~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ...+..+ +..+|.+.+...  +++++|.||++||++|+.+.|.|.++|..+.+ +.|+.||++. ..++++|+|..+|+
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PT  188 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPT  188 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSE
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCE
Confidence            4568888 688999877543  67999999999999999999999999999975 9999999876 67899999999999


Q ss_pred             EEEEcCCCCCcccccCC-------CCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGA-------RTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~-------~~~~~i~~fi~~~~  266 (411)
                      +++|++|.. ...+.|.       ++.+.|..|+.++-
T Consensus       189 ll~~~~G~~-v~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          189 LLVYKGGEL-LSNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             EEEEETTEE-EEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             EEEEECCEE-EEEEeCCcccccccccHHHHHHHHHHcC
Confidence            999986542 3344442       45678888887764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.40  E-value=4.9e-13  Score=95.17  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=63.0

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCC-CcchhHH
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR-DVKPIAE  129 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~-~~~~l~~  129 (411)
                      ..|.||++||++|+.+.|.++++++.+.+++.++.+|   +.+++++|||.++|++++  +|+.+.+  |.. +.+.+.+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~   74 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK   74 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence            4689999999999999999999999998889999998   788999999999999887  6654333  876 7777776


Q ss_pred             HH
Q 015217          130 FA  131 (411)
Q Consensus       130 ~~  131 (411)
                      ++
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            54

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.40  E-value=1.5e-11  Score=120.40  Aligned_cols=181  Identities=13%  Similarity=0.133  Sum_probs=138.8

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDV  124 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~  124 (411)
                      .-.+++.+.++...|..|+++...+++++.. .++|.+...+  .. .       ...|++.+.++|+. -++|.|-...
T Consensus        16 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~--~~-~-------~~~p~~~~~~~~~~~~i~f~g~p~g   84 (521)
T 1hyu_A           16 KLTKPVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDN--TL-P-------VRKPSFLITNPGSQQGPRFAGSPLG   84 (521)
T ss_dssp             TCCSCEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECT--TS-S-------SCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             hCCCCEEEEEEeCCCcchHHHHHHHHHHHHh-CCceEEEEcC--Cc-c-------cCCCEEEEecCCCcceEEEeccCcc
Confidence            3456777777778899999999999988765 4567764322  11 0       56799999877643 6899999999


Q ss_pred             chhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHH
Q 015217          125 KPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA  204 (411)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a  204 (411)
                      .++..|+...+..                     ......++++.+........+..++.|+++||++|+.+.+.+.+++
T Consensus        85 ~e~~s~~~~l~~~---------------------~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a  143 (521)
T 1hyu_A           85 HEFTSLVLALLWT---------------------GGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMA  143 (521)
T ss_dssp             GGHHHHHHHHHHH---------------------TTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhh---------------------cCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHH
Confidence            9999999877531                     2233456666666543234567899999999999999999999999


Q ss_pred             HHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          205 NNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       205 ~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      ..+. ++.+..+|.+..++++++|+|.++|++++  ++.  . ...|..+.+.|.+|+..
T Consensus       144 ~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~--~-~~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          144 VLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGK--E-FGQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             HHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE--E-EEESCCCHHHHHHHHCC
T ss_pred             hHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE--CCE--E-EecCCCCHHHHHHHHhh
Confidence            9976 79999999999999999999999999987  332  2 24588888999988744

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.40  E-value=7.3e-13  Score=107.04  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=82.2

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccHh--------------
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQS--------------   93 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~~--------------   93 (411)
                      +..+..++++.+. ...-++++++|.||++||++|+...|.+.++.+.++++ +.++.|+++.+++              
T Consensus        13 ~~~l~~~~g~~~~-l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~   91 (148)
T 3hcz_A           13 NLYMTDTTGTYRY-LYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGW   91 (148)
T ss_dssp             CCCCBCTTSCBCC-GGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTS
T ss_pred             ceEEecCCCCEEE-hHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCc
Confidence            3444555555555 33347899999999999999999999999999999874 9999999997766              


Q ss_pred             -----------HHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHH
Q 015217           94 -----------LAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus        94 -----------~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                                 +++.|++.++|+++++ ++|+...++.|..+.+.+++.+.+.
T Consensus        92 ~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A           92 LNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             EEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred             eEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence                       9999999999999999 4566677777775555555555443

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.39  E-value=8.2e-13  Score=107.31  Aligned_cols=101  Identities=16%  Similarity=0.272  Sum_probs=82.3

Q ss_pred             EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------
Q 015217           34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------   90 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------   90 (411)
                      .++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ ++.++.|+++.                      
T Consensus        13 ~~~g~~~~-l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~   91 (151)
T 2f9s_A           13 DTNGKRIE-LSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDT   91 (151)
T ss_dssp             CTTCCEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEET
T ss_pred             cCCCCEEE-HHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECC
Confidence            34444444 2223689999999999999999999999999999986 58999999875                      


Q ss_pred             cHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           91 HQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        91 ~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +..+++.|++.++|+++++ .+|+.+.++.|..+.+.+.+++.+.+
T Consensus        92 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll  137 (151)
T 2f9s_A           92 DRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK  137 (151)
T ss_dssp             TSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             chHHHHhcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            3478999999999999999 56766777889989888888888765

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.38  E-value=1.7e-12  Score=105.53  Aligned_cols=104  Identities=15%  Similarity=0.279  Sum_probs=85.7

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccH-----------------
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQ-----------------   92 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~-----------------   92 (411)
                      .+..++++.+. ....++++++|.||++||++|+...+.+.++.+.+++ ++.++.|+++...                 
T Consensus        14 ~l~~~~g~~~~-l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~   92 (152)
T 2lja_A           14 SYPDINGKTVS-LADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQL   92 (152)
T ss_dssp             EEEETTTEEEE-STTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEE
T ss_pred             EeecCCCCEee-HHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCcee
Confidence            34455555444 2233688999999999999999999999999999987 5999999998764                 


Q ss_pred             ------hHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           93 ------SLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        93 ------~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                            .+++.|++.++|+++++. +|+.+.++.|..+.+.+.+++.+..
T Consensus        93 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  142 (152)
T 2lja_A           93 HMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL  142 (152)
T ss_dssp             ECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred             ecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence                  789999999999999997 6776777888889999999888765

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.38  E-value=1.7e-12  Score=105.39  Aligned_cols=90  Identities=18%  Similarity=0.299  Sum_probs=77.5

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc------------------------cHhHHHhcC-
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE------------------------HQSLAQEYG-   99 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~------------------------~~~~~~~~~-   99 (411)
                      -++++++|.||++||++|+...|.+.++.+.+++ ++.++.|+++.                        ...+++.|| 
T Consensus        22 ~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           22 LKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            3689999999999999999999999999999864 69999999863                        345788899 


Q ss_pred             -CCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          100 -IRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       100 -i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                       +.++|+++++. +|+...++.|..+.+.+.+++.+..
T Consensus       102 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~  139 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH  139 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence             99999999995 5666788999999999998888765

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.38  E-value=1e-12  Score=107.99  Aligned_cols=96  Identities=13%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             EeCccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcC---CCcccEEEEE
Q 015217           34 QLTPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG---IRGFPTIKVF  109 (411)
Q Consensus        34 ~l~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~---i~~~P~~~~~  109 (411)
                      .++++.+. .+. .++++++|.||++||++|+.+.|.++++++.++ ++.+..||.+++++++.+|+   +.++|+++++
T Consensus        40 ~~~~~~~~-~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~  117 (167)
T 1z6n_A           40 GLPSALTE-RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (167)
T ss_dssp             CCCHHHHH-HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             CCCHHHHH-HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEE
Confidence            45555554 333 357899999999999999999999999998875 68999999999999999997   9999999999


Q ss_pred             eCC-CCCcccCCCCCcchhHHHHHH
Q 015217          110 VPG-KPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       110 ~~g-~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      ++| +.+.++ |.. +..+...+.+
T Consensus       118 ~~~G~~~~~~-g~~-p~~~~~~i~~  140 (167)
T 1z6n_A          118 DEEFNLLGRF-VER-PQAVLDGGPQ  140 (167)
T ss_dssp             CTTCCEEEEE-ESS-CHHHHHHCHH
T ss_pred             CCCCCEEEEE-cCC-CHHHHHhHHH
Confidence            886 434444 443 3444444443

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.36  E-value=3.3e-12  Score=103.88  Aligned_cols=104  Identities=20%  Similarity=0.291  Sum_probs=83.6

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEec----------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDA----------------------   88 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~----------------------   88 (411)
                      +..++++.+. ....++++++|.||++||++|+...+.+.++.+.+++ ++.++.|+.                      
T Consensus        13 l~~~~g~~~~-l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (153)
T 2l5o_A           13 LPDLHGKTVS-NADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVM   91 (153)
T ss_dssp             EECTTSCEEE-HHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEE
T ss_pred             eecCCCCCcc-HHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEE
Confidence            3444555554 2233689999999999999999999999999999986 477776653                      


Q ss_pred             -cccHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           89 -NEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        89 -~~~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                       +.+..+++.|++.++|+++++ .+|+.+.++.|..+.+.+.+++.+.++
T Consensus        92 ~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A           92 YDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             ECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence             446689999999999999999 567767789999999999999887763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.36  E-value=2e-12  Score=102.80  Aligned_cols=99  Identities=20%  Similarity=0.324  Sum_probs=79.4

Q ss_pred             EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec-------------------------
Q 015217           34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA-------------------------   88 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~-------------------------   88 (411)
                      ..+++.+. ...-++++++|.||++||++|+...+.+.++.+.+++++.++.+++                         
T Consensus         9 ~~~g~~~~-l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (138)
T 4evm_A            9 GVDGKTYR-LSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLP   87 (138)
T ss_dssp             BTTSCEEE-GGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCC
T ss_pred             CCCCCEEE-HHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCee
Confidence            33444444 2233689999999999999999999999999999777888888853                         


Q ss_pred             ---cccHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHH
Q 015217           89 ---NEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        89 ---~~~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                         +.+..++++|++.++|+++++ ++|+...++.|..+.+.+.+++.+
T Consensus        88 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           88 VLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             EEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             EEECcchHHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence               334579999999999999999 567667788999998888887764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.36  E-value=1.1e-12  Score=98.09  Aligned_cols=98  Identities=15%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             CcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCcccc-cc
Q 015217          161 ESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQG-FP  234 (411)
Q Consensus       161 ~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~-~P  234 (411)
                      ....+++ ++|.+ +.+.+++++|+|+++||++|+.+.+.|++++..  +++.|+.||.+..+.    ++++|||.+ .|
T Consensus         7 ~~~~i~s~e~f~~-ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sP   83 (112)
T 3iv4_A            7 VAIKLSSIDQFEQ-VIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESP   83 (112)
T ss_dssp             CEEECCSHHHHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSS
T ss_pred             ceeecCCHHHHHH-HHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCC
Confidence            3556655 55666 455688999999999999999999999999985  579999999998866    799999995 99


Q ss_pred             EEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          235 TILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      ++++|++|......-.+..+...|.+.
T Consensus        84 q~il~k~G~~v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           84 QAFYFVNGEMVWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             EEEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred             eEEEEECCEEEEEeeccccCHHHHHHh
Confidence            999999887544445567788777654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.36  E-value=2.1e-12  Score=104.02  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=65.0

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHHHHH---HHHhCCCeEEEEEecc-ccHhHHHhcCCCcccEEEEEe-CCCCCcc
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKA---ATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVFV-PGKPPVD  117 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~---~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~-~g~~~~~  117 (411)
                      .+..++++++|.|||+||++|+.+.|.+.+.   .....  ..|+.|+++ +..+++.++++.++|++++|+ +|+.+.+
T Consensus        39 ~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~  116 (151)
T 3ph9_A           39 YAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRAD  116 (151)
T ss_dssp             HHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTT
T ss_pred             HHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEE
Confidence            4556799999999999999999999988764   22222  234455554 345678899999999999998 7887888


Q ss_pred             cCCC-------CCcchhHHHHH
Q 015217          118 YQGA-------RDVKPIAEFAL  132 (411)
Q Consensus       118 ~~g~-------~~~~~l~~~~~  132 (411)
                      ..|.       ...+.+.+.+.
T Consensus       117 ~~G~~~~~~~~~~~~~~~~ll~  138 (151)
T 3ph9_A          117 IAGRYSNRLYTYEPRDLPLLIE  138 (151)
T ss_dssp             CCCSCTTSTTCCCGGGHHHHHH
T ss_pred             EeCCcCCcccccchhhHHHHHH
Confidence            8887       55555544443

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.36  E-value=4.2e-12  Score=104.05  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             CCcEE-eCccchhHHHhcCCCeEEEEEECCCChhhhh-hhHHHHHHHHHhCC-CeEEEEEec------------------
Q 015217           30 SPVVQ-LTPNNFKSKVLNANGVVLVEFYAPWCGHCQA-LTPIWEKAATVLKG-VATVAALDA------------------   88 (411)
Q Consensus        30 ~~~~~-l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~-~~~~~~~~~~~~~~-~i~~~~vd~------------------   88 (411)
                      ..... ++++.+. ...-++++++|.||++||++|+. ..|.+.++.+.+++ ++.++.|++                  
T Consensus        12 ~~~~~~~~g~~~~-l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~   90 (160)
T 3lor_A           12 LDVQEWVNHEGLS-NEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFID   90 (160)
T ss_dssp             CCEEEESSSCCCC-HHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHH
T ss_pred             cccccccCCCccC-HHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHH
Confidence            33444 4555555 33346899999999999999999 59999999999986 489999986                  


Q ss_pred             ----------cccHh------HHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           89 ----------NEHQS------LAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        89 ----------~~~~~------~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                +....      ++++|++.++|+++++. +|+...++.|..+.+.+.+.+.+.+
T Consensus        91 ~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  154 (160)
T 3lor_A           91 EFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLL  154 (160)
T ss_dssp             HTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence                      22334      89999999999999996 5766778889999888888888765

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.34  E-value=5.1e-12  Score=103.35  Aligned_cols=105  Identities=14%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             CCcEEe--CccchhHHHhcCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhCC-CeEEEEEecc----------------
Q 015217           30 SPVVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQAL-TPIWEKAATVLKG-VATVAALDAN----------------   89 (411)
Q Consensus        30 ~~~~~l--~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~-~i~~~~vd~~----------------   89 (411)
                      ..+..+  +++.+. ...-++++++|.||++||++|+.. .|.+.++.+.+++ ++.++.|+++                
T Consensus         9 f~l~~~~~~g~~~~-l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~   87 (158)
T 3eyt_A            9 LQIQQWFNSATDLT-LADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFL   87 (158)
T ss_dssp             CCEEEEESCSSCCC-TGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHH
T ss_pred             ceehhhhcCCCccC-HHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHH
Confidence            344453  334444 333368999999999999999996 9999999999985 6899888863                


Q ss_pred             ------------ccH-----hHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           90 ------------EHQ-----SLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        90 ------------~~~-----~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                  ...     .+++.|++.++|+++++. +|+...++.|..+.+.+.+.+.+.+
T Consensus        88 ~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  151 (158)
T 3eyt_A           88 HEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLL  151 (158)
T ss_dssp             HHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence                        122     589999999999999985 5666778889999888888888765

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.34  E-value=2.5e-12  Score=106.45  Aligned_cols=108  Identities=17%  Similarity=0.241  Sum_probs=83.2

Q ss_pred             CCCcEEe--CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-------------------
Q 015217           29 SSPVVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-------------------   87 (411)
Q Consensus        29 ~~~~~~l--~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-------------------   87 (411)
                      +..+..+  +++.+....+.++++++|.||++||++|+.+.|.+.++.+.   ++.++.|+                   
T Consensus        30 ~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~  106 (168)
T 2b1k_A           30 KFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPY  106 (168)
T ss_dssp             CCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCC
T ss_pred             CeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCC
Confidence            3444555  55555533345789999999999999999999999999876   46777777                   


Q ss_pred             ----ccccHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHHH
Q 015217           88 ----ANEHQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKALL  139 (411)
Q Consensus        88 ----~~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~~  139 (411)
                          ++.+..++++|++.++|+++++. +|+...++.|..+.+.+.+++.+.++...
T Consensus       107 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~  163 (168)
T 2b1k_A          107 ALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS  163 (168)
T ss_dssp             SEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred             ceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence                34556789999999999766664 56666788899999999999888876554

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.33  E-value=5.2e-13  Score=110.05  Aligned_cols=104  Identities=17%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEe----------------------
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALD----------------------   87 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd----------------------   87 (411)
                      .+..++++.+. ....++++++|.||++||++|+.+.|.+.++++.++. .+.++.|+                      
T Consensus        22 ~l~~~~g~~~~-~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPAS-VYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGG-GGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEee-HHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            56677777777 4455789999999999999999999999999988643 35554444                      


Q ss_pred             ------ccccHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           88 ------ANEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        88 ------~~~~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                            ++.+.+++++|++.++|+++++ ++|+.+.++.|..+.+.+.+++.+.+
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                  3445689999999999999999 56766777889999888888887543

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.32  E-value=4.3e-12  Score=105.47  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             EEeCccchHHHHh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhH------------
Q 015217          163 IELNSSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSL------------  224 (411)
Q Consensus       163 ~~l~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~l------------  224 (411)
                      ...+..++.+.+.   ..+++++|.||++||++|+.+.+.+   .++.+.+.+++.++.||++....+            
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchh
Confidence            3445566666543   4578999999999999999974444   666666665799999999876654            


Q ss_pred             --------------HhhCccccccEEEEEcCCCCCcccccCCCC-HHHHHHHHHHHhh
Q 015217          225 --------------MSKFNVQGFPTILVFGADKDSPIPYEGART-AGAIESFALEQLE  267 (411)
Q Consensus       225 --------------~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~-~~~i~~fi~~~~~  267 (411)
                                    +++|++.++|+++++..+++...++.|..+ .+.+.+++.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence                          789999999999999666665677889888 9999999988764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.32  E-value=6.1e-12  Score=102.24  Aligned_cols=99  Identities=21%  Similarity=0.278  Sum_probs=76.8

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------   90 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------   90 (411)
                      ..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++.                     
T Consensus        15 ~~~~G~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d   93 (152)
T 2lrn_A           15 IDLKGNSVS-LNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLL   93 (152)
T ss_dssp             ECSSSCEEE-SGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEE
T ss_pred             EcCCCCEEe-HHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEec
Confidence            334444443 2223688999999999999999999999999999987 49999999986                     


Q ss_pred             ----cHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           91 ----HQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        91 ----~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                          ...+++.|++.++|+++++. +|+.+.++   .+.+.+.+++.+.+
T Consensus        94 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~  140 (152)
T 2lrn_A           94 QKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFV  140 (152)
T ss_dssp             CHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHH
T ss_pred             ccchhHHHHHHhCCCcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHH
Confidence                57899999999999999994 56544444   35567777777654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.32  E-value=4e-12  Score=102.65  Aligned_cols=103  Identities=14%  Similarity=0.191  Sum_probs=78.1

Q ss_pred             CCCcEEeCccchhHHH--hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHh-CC-CeEEEEEeccc--------------
Q 015217           29 SSPVVQLTPNNFKSKV--LNANGVVLVEFYAPWCGHCQALTPIWEKAATVL-KG-VATVAALDANE--------------   90 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~--~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~-~i~~~~vd~~~--------------   90 (411)
                      +..+..++++.+. ..  .-++++++|.||++||++|+...|.+.++.+.+ .+ .+.++.|+++.              
T Consensus        13 ~~~l~~~~g~~~~-l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~   91 (148)
T 3fkf_A           13 YFSLPNEKGEKLS-RSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTL   91 (148)
T ss_dssp             CCCEEBTTSCEEC-TTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTC
T ss_pred             CeEeeCCCCCEEe-ccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCC
Confidence            3344445555444 22  236899999999999999999999999999999 66 48999998886              


Q ss_pred             -----------cHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           91 -----------HQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        91 -----------~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                 ...+++.|++.++|+++++. +|+...++.   +.+.+.+++.+.+
T Consensus        92 ~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  145 (148)
T 3fkf_A           92 SWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI---QGEALTGKLKELL  145 (148)
T ss_dssp             CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC
T ss_pred             CceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHH
Confidence                       44899999999999999995 555444433   6777777776654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.31  E-value=4.4e-12  Score=103.46  Aligned_cols=97  Identities=18%  Similarity=0.317  Sum_probs=77.9

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-----------------------ccHhH
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-----------------------EHQSL   94 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-----------------------~~~~~   94 (411)
                      +.+. .....+++++|.||++||++|+.+.|.+.++.+.  +++.++.|+++                       ....+
T Consensus        33 ~~~~-l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  109 (156)
T 1kng_A           33 PGLD-PAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRA  109 (156)
T ss_dssp             CCBC-GGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHH
T ss_pred             ceec-hHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHH
Confidence            5555 3334588999999999999999999999998876  56888887764                       34578


Q ss_pred             HHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHHHH
Q 015217           95 AQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus        95 ~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                      ++.|++.++|+++++ .+|+...++.|..+.+.+.+++.+.++.
T Consensus       110 ~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~  153 (156)
T 1kng_A          110 SIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  153 (156)
T ss_dssp             HHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             HHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            899999999977777 5666677788999999999888877653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.31  E-value=2.5e-12  Score=96.42  Aligned_cols=77  Identities=14%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHH
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAE  129 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~  129 (411)
                      +.++.||++||++|+.+.+.+++++..+.  +.+..+|+++++++..+||++ +|+++++.+|+.+  ..|..+.+.|.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L~~  104 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVIGA  104 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHHHH
Confidence            67999999999999999999999998864  889999999999999999997 9999989888753  457788888887


Q ss_pred             HH
Q 015217          130 FA  131 (411)
Q Consensus       130 ~~  131 (411)
                      |+
T Consensus       105 ~L  106 (107)
T 2fgx_A          105 YL  106 (107)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.30  E-value=1.3e-11  Score=100.16  Aligned_cols=99  Identities=23%  Similarity=0.443  Sum_probs=78.4

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccH----------------------
Q 015217           36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQ----------------------   92 (411)
Q Consensus        36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~----------------------   92 (411)
                      +++.+. ....++++++|.||++||++|+...+.+.++.+.+++. +.++.|+++.+.                      
T Consensus        17 ~g~~~~-l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~   95 (152)
T 3gl3_A           17 KTGVVK-LSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKG   95 (152)
T ss_dssp             SSSEEE-GGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTC
T ss_pred             CCCeEe-HHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcc
Confidence            444444 22336889999999999999999999999999999874 899999988655                      


Q ss_pred             hHHHhcCCCcccEEEEE-eCCCCCcccCCCCCc--chhHHHHHHHH
Q 015217           93 SLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDV--KPIAEFALQQI  135 (411)
Q Consensus        93 ~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~--~~l~~~~~~~~  135 (411)
                      .+++.|++.++|+++++ .+|+.+.++.|....  +.+.+++.+.+
T Consensus        96 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A           96 QTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL  141 (152)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             hhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence            68889999999999888 456656677776544  57777777654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.30  E-value=1.2e-11  Score=103.89  Aligned_cols=104  Identities=18%  Similarity=0.315  Sum_probs=81.8

Q ss_pred             cEEe--CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-e------EEEEEeccc-cHhHHHhc---
Q 015217           32 VVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-A------TVAALDANE-HQSLAQEY---   98 (411)
Q Consensus        32 ~~~l--~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i------~~~~vd~~~-~~~~~~~~---   98 (411)
                      +..+  +.+.+. ...-++++++|.||++||++|+...|.+.++.+.++++ +      .++.|+++. .++.+++|   
T Consensus        42 l~~~~~~g~~~~-l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~  120 (183)
T 3lwa_A           42 GDSLMEEGTQIN-LSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTD  120 (183)
T ss_dssp             EEBSSSTTCEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHH
T ss_pred             ccccccCCcEec-HHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHH
Confidence            4445  555554 33346899999999999999999999999999998764 7      999999998 66666665   


Q ss_pred             ----------------------CCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           99 ----------------------GIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        99 ----------------------~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                                            ++.++|+++++. +|+...++.|..+.+.+.+++.+.++
T Consensus       121 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          121 NGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             TTCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             cCCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                                  689999877774 56667788999999999999887763

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.28  E-value=5.3e-12  Score=102.81  Aligned_cols=103  Identities=16%  Similarity=0.231  Sum_probs=83.3

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec--------------------
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--------------------   88 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--------------------   88 (411)
                      +..+..++++.+. ...-+ ++++|.||++||++|+...+.+.++.+.+  ++.++.|++                    
T Consensus        13 ~f~l~~~~g~~~~-l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~   88 (154)
T 3ia1_A           13 DFLLLDPKGQPVT-PATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFI   88 (154)
T ss_dssp             CCCEECTTSCEEC-TTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEE
T ss_pred             ceEEECCCCCEec-hHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCc
Confidence            3444555555554 22234 89999999999999999999999999999  688888888                    


Q ss_pred             -------cccHhHHHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           89 -------NEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        89 -------~~~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                             +....+++.|++.++|+++++ ++|+.+.++.|..+.+.+.+++.+..
T Consensus        89 ~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  143 (154)
T 3ia1_A           89 PLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAG  143 (154)
T ss_dssp             ECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred             ccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence                   366789999999999998888 45766778899999999999888764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.94  E-value=3.5e-13  Score=106.53  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCC--CchhHHhhCccccccEEEEEcC-CCCC--c
Q 015217          175 LKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQGFPTILVFGA-DKDS--P  246 (411)
Q Consensus       175 ~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~~P~i~~~~~-~~~~--~  246 (411)
                      ...+++++|.||++||++|+.+.+.+   .++++.+.+++.++.||++  ....++++|+|.++|++++|.. ++..  .
T Consensus        16 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~   95 (130)
T 2lst_A           16 QAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEV   95 (130)
Confidence            45567999999999999999999999   9999998888999999984  5578999999999999999953 3443  4


Q ss_pred             ccccCCCCHHHHHHHHHHHhhh
Q 015217          247 IPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       247 ~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      .++.|..+.+.+.+++.+.+..
T Consensus        96 ~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           96 GRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            6788988889999998887653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.27  E-value=6.1e-11  Score=104.18  Aligned_cols=148  Identities=13%  Similarity=0.194  Sum_probs=97.8

Q ss_pred             CCCeEEEEEE-CCCChhhh-hhhHHHHHHHHHhCC-Ce-EEEEEecccc----------------------HhHHHhcCC
Q 015217           47 ANGVVLVEFY-APWCGHCQ-ALTPIWEKAATVLKG-VA-TVAALDANEH----------------------QSLAQEYGI  100 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~-~~~~~~~~~~~~~~~-~i-~~~~vd~~~~----------------------~~~~~~~~i  100 (411)
                      ++++++|.|| ++||++|. ...|.+.++.+.+++ .+ .++.|+.+..                      ..+++.||+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            6789999999 99999999 999999999988864 57 7888876531                      246677776


Q ss_pred             C-----------cccEEEEEeCCCCCcccCCCCCc------chhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcE
Q 015217          101 R-----------GFPTIKVFVPGKPPVDYQGARDV------KPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESI  163 (411)
Q Consensus       101 ~-----------~~P~~~~~~~g~~~~~~~g~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  163 (411)
                      .           ..|+.+++++|+....+.|....      ....+.+. .+                      ...   
T Consensus       112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~-~l----------------------~~~---  165 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLK-YL----------------------APQ---  165 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHH-HH----------------------CTT---
T ss_pred             eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHH-Hh----------------------hhh---
Confidence            5           23665555666554444444322      22222222 11                      000   


Q ss_pred             EeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---hhHHhhCccccccEEEE
Q 015217          164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE---KSLMSKFNVQGFPTILV  238 (411)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~~l~~~~~v~~~P~i~~  238 (411)
                                .  .....+++|..+||+.|+.....+.+..      +.+-.+|.+.+   ..+.+.+|...+|++++
T Consensus       166 ----------~--i~~~~i~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~  225 (241)
T 1nm3_A          166 ----------H--QVQESISIFTKPGCPFCAKAKQLLHDKG------LSFEEIILGHDATIVSVRAVSGRTTVPQVFI  225 (241)
T ss_dssp             ----------S--CCCCCEEEEECSSCHHHHHHHHHHHHHT------CCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             ----------c--cccceEEEEECCCChHHHHHHHHHHHcC------CceEEEECCCchHHHHHHHHhCCCCcCEEEE
Confidence                      0  1233477889999999999998887642      44555665543   34777899999999865

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.27  E-value=1.6e-11  Score=101.19  Aligned_cols=102  Identities=15%  Similarity=0.287  Sum_probs=79.6

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc------------------ccH
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN------------------EHQ   92 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~------------------~~~   92 (411)
                      .+..++.+.+. ....++++++|.||++||++|+...|.+.++.+.++ ++.++.|+++                  ...
T Consensus        21 ~l~~~~g~~~~-l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~   98 (165)
T 3ha9_A           21 SLTTIDGEVIS-LNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTP   98 (165)
T ss_dssp             CEEBTTSCEEC-GGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCH
T ss_pred             EeecCCCCEee-HHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCH
Confidence            34455555554 333468999999999999999999999999999998 8999999987                  342


Q ss_pred             ----------------------hHHHhcCCCcccEEEEEeCCCCCcccCCCC-CcchhHHHHHHHH
Q 015217           93 ----------------------SLAQEYGIRGFPTIKVFVPGKPPVDYQGAR-DVKPIAEFALQQI  135 (411)
Q Consensus        93 ----------------------~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~-~~~~l~~~~~~~~  135 (411)
                                            .+++.|++.++|+++++..++.+.. .|.. +.+.+.+.+.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A           99 EMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             HHHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHh
Confidence                                  7899999999999999965444333 7777 7888888776543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.27  E-value=2.3e-12  Score=93.30  Aligned_cols=73  Identities=15%  Similarity=0.224  Sum_probs=61.9

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                      ++.||++||++|+.+.|.+++++..+     +..||++++++++++||++ +|++++ .+|+.+.   |..+.+.|.+++
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l   72 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL   72 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence            78999999999999999998876432     6889999999999999998 999887 7776542   778888888888


Q ss_pred             HHH
Q 015217          132 LQQ  134 (411)
Q Consensus       132 ~~~  134 (411)
                      .+.
T Consensus        73 ~~~   75 (87)
T 1ttz_A           73 DAA   75 (87)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.26  E-value=1.8e-11  Score=99.54  Aligned_cols=97  Identities=10%  Similarity=0.080  Sum_probs=75.6

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHh---------------
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQS---------------   93 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~---------------   93 (411)
                      ..+..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++...+               
T Consensus        18 f~l~~~~G~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~   96 (152)
T 2lrt_A           18 IQLKDLKGNTRS-LTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVR   96 (152)
T ss_dssp             CCEEBTTSCEEC-TTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEE
T ss_pred             eEEEcCCCCEEe-HHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEE
Confidence            344445554444 2223578999999999999999999999999999987 49999999986653               


Q ss_pred             --------HHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchh
Q 015217           94 --------LAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPI  127 (411)
Q Consensus        94 --------~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l  127 (411)
                              +++.|++.++|++++++ +|+.+.++.|..+.+..
T Consensus        97 d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~  139 (152)
T 2lrt_A           97 DANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEA  139 (152)
T ss_dssp             CSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCSCHHHH
T ss_pred             CCCCcchHHHHHcCcccCceEEEECCCCeEEEecCCHHHHHHH
Confidence                    88999999999999995 56667777777665443

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.25  E-value=2.4e-11  Score=98.78  Aligned_cols=103  Identities=22%  Similarity=0.363  Sum_probs=79.8

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc-------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEH-------------------   91 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~-------------------   91 (411)
                      +..++++.+. ....++++++|.||++||++|+...+.+.++.+.+++ ++.++.|+++.+                   
T Consensus        13 l~~~~g~~~~-l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   91 (154)
T 3kcm_A           13 LNTLNGEVVK-LSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVL   91 (154)
T ss_dssp             EECTTSCEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEE
T ss_pred             EEcCCCCEEe-hhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEE
Confidence            4444555554 3333689999999999999999999999999999987 689999998865                   


Q ss_pred             ----HhHHHhcCCCcccEEEEEe-CCCCCcccCCCC--CcchhHHHHHHHH
Q 015217           92 ----QSLAQEYGIRGFPTIKVFV-PGKPPVDYQGAR--DVKPIAEFALQQI  135 (411)
Q Consensus        92 ----~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~--~~~~l~~~~~~~~  135 (411)
                          ..+++.|++.++|+++++. +|+.+.++.|..  +.+.+.+++.+..
T Consensus        92 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A           92 LDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             ECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-
T ss_pred             ecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHH
Confidence                3488999999999877774 566566777775  5557777776543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.24  E-value=2.2e-11  Score=99.62  Aligned_cols=101  Identities=20%  Similarity=0.366  Sum_probs=78.3

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEeccc------------------
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANE------------------   90 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~------------------   90 (411)
                      ..+..++++.+. ....++++++|.||++||++|+...+.+.++.+.++ .++.++.|+++.                  
T Consensus        24 f~l~~~~g~~~~-l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d  102 (158)
T 3hdc_A           24 FKLPTLSGENKS-LAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSD  102 (158)
T ss_dssp             CEEECTTSCEEE-SGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEEC
T ss_pred             ceeEcCCCCEEe-hHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEEC
Confidence            334455555554 333468899999999999999999999999999998 479999999987                  


Q ss_pred             -cHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcc--hhHHHH
Q 015217           91 -HQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVK--PIAEFA  131 (411)
Q Consensus        91 -~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~--~l~~~~  131 (411)
                       +..+++.|++.++|+++++. +|+...++.|..+.+  ++++.+
T Consensus       103 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~  147 (158)
T 3hdc_A          103 ATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYL  147 (158)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred             chHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHH
Confidence             67899999999999988884 566567777765543  444444

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.24  E-value=3.9e-11  Score=96.47  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=68.0

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEecccc-----------------
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEH-----------------   91 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~-----------------   91 (411)
                      .+..++++.+. ...-++++++|.||++||++|+.+.|.+.++++.++  +++.++.|+++..                 
T Consensus        12 ~l~~~~g~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~   90 (144)
T 1i5g_A           12 NVLKGAAADIA-LPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP   90 (144)
T ss_dssp             EEEETTEEEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred             EEEcCCCCEec-HHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccc
Confidence            45556666655 333468899999999999999999999999999998  4788888988753                 


Q ss_pred             -------HhHHHhcCCCcccEEEEEe--CCCC
Q 015217           92 -------QSLAQEYGIRGFPTIKVFV--PGKP  114 (411)
Q Consensus        92 -------~~~~~~~~i~~~P~~~~~~--~g~~  114 (411)
                             ..++++|++.++|+++++.  +|+.
T Consensus        91 ~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i  122 (144)
T 1i5g_A           91 FEDRKGMEFLTTGFDVKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             TTCHHHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             cCchHHHHHHHHHcCCCCCCEEEEEECCCCcE
Confidence                   5789999999999999997  4553

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.24  E-value=2.5e-11  Score=98.77  Aligned_cols=91  Identities=19%  Similarity=0.312  Sum_probs=76.2

Q ss_pred             cCCCeEEEEEe-CCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCch-----------hHHhhCccccccEEEEEc
Q 015217          176 KSKDLWIVEFF-APWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEK-----------SLMSKFNVQGFPTILVFG  240 (411)
Q Consensus       176 ~~~~~~lv~f~-~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~-----------~l~~~~~v~~~P~i~~~~  240 (411)
                      ..+++++|.|| ++||++|+.+.+.+   .++++.+...+.++.+|++...           .++++|+|..+|+++++.
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d  124 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID  124 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence            34789999999 99999999999999   7887776667999999987653           899999999999999996


Q ss_pred             CCCCCcccccCCC--CHHHHHHHHHHHhh
Q 015217          241 ADKDSPIPYEGAR--TAGAIESFALEQLE  267 (411)
Q Consensus       241 ~~~~~~~~y~g~~--~~~~i~~fi~~~~~  267 (411)
                      .++....++ |..  +.+.+.+++.+.+.
T Consensus       125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          125 AEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             TTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            555556666 877  88999999887653

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=6.1e-11  Score=96.03  Aligned_cols=104  Identities=11%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             CCCcEEeCccchhHHH--hcCCCeEEEEEECCCChh--hhhhhHHHHHHHHHh-CC-CeEEEEEeccccH----------
Q 015217           29 SSPVVQLTPNNFKSKV--LNANGVVLVEFYAPWCGH--CQALTPIWEKAATVL-KG-VATVAALDANEHQ----------   92 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~--~~~~~~~~v~f~~~~C~~--C~~~~~~~~~~~~~~-~~-~i~~~~vd~~~~~----------   92 (411)
                      +..+..++++.+. ..  .-++++++|.||++||++  |+...|.+.++.+.+ ++ .+.++.|+++..+          
T Consensus        13 ~f~l~~~~g~~~~-l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~   91 (150)
T 3fw2_A           13 FFSLPNAKGEKIT-RSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRD   91 (150)
T ss_dssp             CCCEEBTTCCEEC-TTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHT
T ss_pred             ccEeECCCCCEEe-cchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHh
Confidence            3444455555544 22  236899999999999999  999999999999999 65 4899999888654          


Q ss_pred             ---------------hHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           93 ---------------SLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        93 ---------------~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                                     .+++.|++.++|++++++ +|+...++.   +.+.+.+.+.+.++
T Consensus        92 ~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  148 (150)
T 3fw2_A           92 TLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIVE  148 (150)
T ss_dssp             TCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHHH
T ss_pred             CCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHHh
Confidence                           789999999999999995 455444442   66777777776653

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.23  E-value=1.8e-11  Score=98.12  Aligned_cols=100  Identities=20%  Similarity=0.335  Sum_probs=73.3

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhCC-CeEEEEEeccccHhH-------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK---AATVLKG-VATVAALDANEHQSL-------------   94 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~~-~i~~~~vd~~~~~~~-------------   94 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.+   +.+.+++ .+.++.|+++.+.+.             
T Consensus        12 l~~~~g~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~   90 (142)
T 3ewl_A           12 YVTVHGDNSR-MSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWI   90 (142)
T ss_dssp             EECTTCCEEE-GGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCE
T ss_pred             EECCCCCEEE-hhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcc
Confidence            3344444444 223368999999999999999999999988   8888764 589999988865543             


Q ss_pred             -----------HHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217           95 -----------AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus        95 -----------~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                                 ++.|++.++|++++++..+. +.+ +..+.+.+.+++.+.
T Consensus        91 ~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~-i~~-~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A           91 VGWNKAGDIRTRQLYDIRATPTIYLLDGRKR-VIL-KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             EEECTTCHHHHTTCSCCCSSSEEEEECTTCB-EEE-CSCCHHHHHHHHHC-
T ss_pred             eeeCCccchhhHHHcCCCCCCeEEEECCCCC-EEe-cCCCHHHHHHHHHHH
Confidence                       34899999999999964333 233 457777888877654

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.23  E-value=9.6e-11  Score=94.37  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=85.5

Q ss_pred             EEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------------------
Q 015217          163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------------------  219 (411)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------------------  219 (411)
                      ..++...+... ...+++++|.||++||++|+...+.+.++++.+.+++.|..|+++                       
T Consensus        15 ~~~~g~~~~~~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (148)
T 2b5x_A           15 AWLNGEVTREQ-LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (148)
T ss_dssp             EEESCCCCHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             ccccCcccchh-hcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcc
Confidence            45666666543 235678999999999999999999999999999888999999854                       


Q ss_pred             ----CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          220 ----SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       220 ----~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                          .+..+++.|++..+|+++++..++.....+.|..+.+.+.+++.+.+.
T Consensus        94 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           94 IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             eEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence                355799999999999999996666556667888889999999988764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.22  E-value=3.6e-11  Score=100.23  Aligned_cols=104  Identities=16%  Similarity=0.259  Sum_probs=80.9

Q ss_pred             CcEEeCc--cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec--------------------
Q 015217           31 PVVQLTP--NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--------------------   88 (411)
Q Consensus        31 ~~~~l~~--~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--------------------   88 (411)
                      .+..+++  +.+. ...-++++++|.||++||++|+...|.+.++.+.   ++.++.|++                    
T Consensus        40 ~l~~~~g~~~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~  115 (176)
T 3kh7_A           40 DLPSVQDPARRLT-EADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLL  115 (176)
T ss_dssp             EEEBSSCTTSEEE-GGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSE
T ss_pred             EecccCCCCceec-HHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCce
Confidence            3444444  3444 3334589999999999999999999999999886   477777775                    


Q ss_pred             ---cccHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217           89 ---NEHQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKAL  138 (411)
Q Consensus        89 ---~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~  138 (411)
                         +.+..+++.|++.++|+++++. +|+...++.|..+.+.+.+++.+.++..
T Consensus       116 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l  169 (176)
T 3kh7_A          116 SISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQL  169 (176)
T ss_dssp             EEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             EEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence               3445788999999999888885 5665778889999999999988887644

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.22  E-value=1.2e-11  Score=94.00  Aligned_cols=87  Identities=16%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-----eEEEEEeCCCc--hhHHhhCccccccEEEEEcCCCCCcccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-----VKLGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDSPIPY  249 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-----~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~~~~~~~~~y  249 (411)
                      +....+|.||++||++|+.+.+.   ++..+...     +.+..||.+.+  ..++.+|+|.++||+++|++|. +..+.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~---i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~-ev~Ri   92 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAE---IAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDV-ESGRL   92 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHH---TTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTE-EEEEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHH---HHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCE-EEeee
Confidence            34689999999999999999863   33334332     67788887765  5789999999999999999554 46788


Q ss_pred             cCCCCHHHHHHHHHHHhh
Q 015217          250 EGARTAGAIESFALEQLE  267 (411)
Q Consensus       250 ~g~~~~~~i~~fi~~~~~  267 (411)
                      .|....+.+..|+.+.+.
T Consensus        93 ~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           93 EGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             ECCCCHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.21  E-value=6.6e-11  Score=93.88  Aligned_cols=88  Identities=18%  Similarity=0.339  Sum_probs=76.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----------------------chhHHhhCcccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS----------------------EKSLMSKFNVQGFP  234 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~----------------------~~~l~~~~~v~~~P  234 (411)
                      .+++++|.||++||++|+...+.+.++++.+. .+.+..|+++.                      +..+++.|++..+|
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  101 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence            45789999999999999999999999999998 89999999876                      57899999999999


Q ss_pred             EEEEEcCCCCCccccc---CCCCHHHHHHHHHHHh
Q 015217          235 TILVFGADKDSPIPYE---GARTAGAIESFALEQL  266 (411)
Q Consensus       235 ~i~~~~~~~~~~~~y~---g~~~~~~i~~fi~~~~  266 (411)
                      +++++..++... .+.   |..+.+.+.+++.+.+
T Consensus       102 ~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          102 AFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             EEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             EEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            999996655544 788   8899999999987653

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.20  E-value=6.2e-11  Score=95.50  Aligned_cols=82  Identities=18%  Similarity=0.244  Sum_probs=66.3

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEecccc-----------------
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEH-----------------   91 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~-----------------   91 (411)
                      .+..+++ .+. ...-++++++|+||++||++|+.+.|.+.++++.++  +++.++.|+++..                 
T Consensus        13 ~l~~~~g-~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~   90 (146)
T 1o8x_A           13 KLRRGDG-EVE-VKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVP   90 (146)
T ss_dssp             EEEETTE-EEE-GGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECC
T ss_pred             EEEcCCC-CCc-HHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeec
Confidence            3445555 544 233368899999999999999999999999999998  4788888888753                 


Q ss_pred             -------HhHHHhcCCCcccEEEEEe--CCCC
Q 015217           92 -------QSLAQEYGIRGFPTIKVFV--PGKP  114 (411)
Q Consensus        92 -------~~~~~~~~i~~~P~~~~~~--~g~~  114 (411)
                             ..++++|+|.++|+++++.  +|+.
T Consensus        91 ~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i  122 (146)
T 1o8x_A           91 FAQSEAVQKLSKHFNVESIPTLIGVDADSGDV  122 (146)
T ss_dssp             GGGHHHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             cchhhHHHHHHHHhCCCCCCEEEEEECCCCeE
Confidence                   4789999999999999997  5653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.19  E-value=7.1e-11  Score=100.26  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=79.2

Q ss_pred             EeCccchhHHHhcCCC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc----------------------
Q 015217           34 QLTPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN----------------------   89 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~----------------------   89 (411)
                      .++.+.+..... +++ +++|.||++||++|+...|.+.++.+.+.+ ++.++.|+++                      
T Consensus        32 ~~~G~~~~l~~~-~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~  110 (196)
T 2ywi_A           32 VIDGNVVRLEDV-KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGY  110 (196)
T ss_dssp             TTTCCEEEHHHH-CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTC
T ss_pred             cCCCCEEeHHHh-CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence            455555552223 455 699999999999999999999999999986 4899999984                      


Q ss_pred             -------ccHhHHHhcCCCcccEEEEEe-CCCCCcc---------cCCCCCcchhHHHHHHHH
Q 015217           90 -------EHQSLAQEYGIRGFPTIKVFV-PGKPPVD---------YQGARDVKPIAEFALQQI  135 (411)
Q Consensus        90 -------~~~~~~~~~~i~~~P~~~~~~-~g~~~~~---------~~g~~~~~~l~~~~~~~~  135 (411)
                             .+..+++.|++.++|+++++. +|+...+         +.|..+.+.+.+.+.+.+
T Consensus       111 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          111 PFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             CSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             CceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHH
Confidence                   345789999999999999995 5654444         457778888888888765

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.19  E-value=8.7e-11  Score=94.31  Aligned_cols=69  Identities=22%  Similarity=0.450  Sum_probs=60.1

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEecccc------------------------HhHHHhcC
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEH------------------------QSLAQEYG   99 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~------------------------~~~~~~~~   99 (411)
                      -++++++|.||++||++|+.+.|.+.++++.++  +++.++.|+++..                        ..++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             hCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            368899999999999999999999999999997  4688888888753                        46899999


Q ss_pred             CCcccEEEEEe--CCCC
Q 015217          100 IRGFPTIKVFV--PGKP  114 (411)
Q Consensus       100 i~~~P~~~~~~--~g~~  114 (411)
                      +.++|++++++  +|+.
T Consensus       106 v~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          106 VESIPTLITINADTGAI  122 (144)
T ss_dssp             CCSSSEEEEEETTTCCE
T ss_pred             CCCCCEEEEEECCCCeE
Confidence            99999999998  4543

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.19  E-value=8.7e-11  Score=99.02  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc----------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----------------------   89 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~----------------------   89 (411)
                      +..++++.+. ...-++++++|.||++||++|+...+.+.++.+.+.+++.++.|+++                      
T Consensus        18 l~~~~G~~~~-l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~   96 (188)
T 2cvb_A           18 LPDPRGGRYR-LSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGI   96 (188)
T ss_dssp             EECTTSCEEE-GGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTC
T ss_pred             eecCCCCEEe-HHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCC
Confidence            3344444444 22336799999999999999999999999999999877889999883                      


Q ss_pred             -------ccHhHHHhcCCCcccEEEEEeC-CCCCcc--------cCCCCCcchhHHHHHHHH
Q 015217           90 -------EHQSLAQEYGIRGFPTIKVFVP-GKPPVD--------YQGARDVKPIAEFALQQI  135 (411)
Q Consensus        90 -------~~~~~~~~~~i~~~P~~~~~~~-g~~~~~--------~~g~~~~~~l~~~~~~~~  135 (411)
                             .+..+++.|++.++|+++++.. |+...+        +.|..+.+.+.+.+.+.+
T Consensus        97 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll  158 (188)
T 2cvb_A           97 FFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALL  158 (188)
T ss_dssp             CSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHH
T ss_pred             CceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHH
Confidence                   3457899999999999999954 543332        223346778888887665

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.19  E-value=2.2e-11  Score=92.15  Aligned_cols=75  Identities=19%  Similarity=0.421  Sum_probs=62.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC------CchhHHhhCccccccEEEEEcCCCCCcccccC
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEG  251 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g  251 (411)
                      .++.+|.||++||++|+.+.|.|.++++.+.      .|+++      .+..++++|+|.++|++++  +|.    .|.|
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~----~~~G   79 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR----TYTG   79 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE----EEES
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE----EecC
Confidence            3456899999999999999999999997764      46666      5778999999999999877  322    4899


Q ss_pred             CCCHHHHHHHHHH
Q 015217          252 ARTAGAIESFALE  264 (411)
Q Consensus       252 ~~~~~~i~~fi~~  264 (411)
                      ..+.+.|.+|+..
T Consensus        80 ~~~~~~l~~~~~~   92 (106)
T 3kp8_A           80 VRSLEALAVASGY   92 (106)
T ss_dssp             CCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHhCC
Confidence            9999999988743

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.18  E-value=5.3e-11  Score=84.41  Aligned_cols=74  Identities=14%  Similarity=0.287  Sum_probs=62.7

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC-CHHHHH
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR-TAGAIE  259 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~-~~~~i~  259 (411)
                      ..|.||++||++|+.+.+.+.++++.+..++.++.+|   +..++++||+.++|++++  +|.  .... |.. +.+++.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~--~~~~-G~~~~~~~l~   73 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGE--LKIM-GRVASKEEIK   73 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTE--EEEC-SSCCCHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCE--EEEc-CCCCCHHHHH
Confidence            3578999999999999999999999998889999988   788999999999999998  332  3333 887 888888


Q ss_pred             HHH
Q 015217          260 SFA  262 (411)
Q Consensus       260 ~fi  262 (411)
                      +++
T Consensus        74 ~~l   76 (77)
T 1ilo_A           74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.18  E-value=1.8e-11  Score=100.69  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh-HHhhCcc--ccccEEEEEcCCCCCcccccC
Q 015217          175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS-LMSKFNV--QGFPTILVFGADKDSPIPYEG  251 (411)
Q Consensus       175 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-l~~~~~v--~~~P~i~~~~~~~~~~~~y~g  251 (411)
                      ...+++++|.||++||++|+.+.|.|.++++.+...+.|+.|+++.++. ++..|++  ..+|++++|..++....++.|
T Consensus        43 ~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G  122 (164)
T 1sen_A           43 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIIN  122 (164)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCC
T ss_pred             HhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeC
Confidence            4567899999999999999999999999887765557777788777666 7888888  569999999544444556677


Q ss_pred             C----------CCHHHHHHHHHHHhhh
Q 015217          252 A----------RTAGAIESFALEQLET  268 (411)
Q Consensus       252 ~----------~~~~~i~~fi~~~~~~  268 (411)
                      .          .+.+.+.+++.+.+..
T Consensus       123 ~~~~~~~~~~~~~~~~l~~~l~~~l~~  149 (164)
T 1sen_A          123 ENGNPSYKYFYVSAEQVVQGMKEAQER  149 (164)
T ss_dssp             TTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred             CCCccchhcccCCHHHHHHHHHHHHHh
Confidence            4          6788999998877643

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.18  E-value=8.5e-11  Score=96.84  Aligned_cols=78  Identities=17%  Similarity=0.288  Sum_probs=64.4

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEecccc------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEH------------------   91 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~------------------   91 (411)
                      +..++. .+. ...-+++++||+||++||++|+.+.|.+.++++.+++  ++.++.|+++..                  
T Consensus        34 l~~~~g-~v~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3s9f_A           34 LRKQAD-TAD-MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPF  111 (165)
T ss_dssp             EEETTE-EEC-SGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCT
T ss_pred             eecCCC-ccc-HHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCccccc
Confidence            344444 444 2233689999999999999999999999999999985  688888888766                  


Q ss_pred             ------HhHHHhcCCCcccEEEEEeC
Q 015217           92 ------QSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        92 ------~~~~~~~~i~~~P~~~~~~~  111 (411)
                            ..+++.|+|.++|++++++.
T Consensus       112 ~~~~~~~~l~~~~~v~~~Pt~~lid~  137 (165)
T 3s9f_A          112 ANRNIVEALTKKYSVESIPTLIGLNA  137 (165)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEET
T ss_pred             CchhHHHHHHHHcCCCCCCEEEEEeC
Confidence                  67999999999999999984

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.18  E-value=4.1e-11  Score=96.05  Aligned_cols=99  Identities=10%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhCC-CeEEEEEeccccHh------------
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK---AATVLKG-VATVAALDANEHQS------------   93 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~~-~i~~~~vd~~~~~~------------   93 (411)
                      ..+..++++.+. ...-++++++|.||++||++|+...|.+.+   +.+.+++ ++.++.|+.+...+            
T Consensus        14 f~l~~~~g~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~   92 (142)
T 3eur_A           14 FTYTLDSGVKGT-LYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKE   92 (142)
T ss_dssp             CEEEETTSCEEE-TTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTT
T ss_pred             cEEEcCCCCEee-HHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccc
Confidence            334445554444 222357999999999999999999999999   8988864 68999999886633            


Q ss_pred             ------------HHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHH
Q 015217           94 ------------LAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        94 ------------~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~  132 (411)
                                  +++.|++.++|++++++. |+.+.+..   +.+.+.+++.
T Consensus        93 ~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (142)
T 3eur_A           93 WTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA---TLQKVEQYLA  141 (142)
T ss_dssp             SEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE---CHHHHHHHHH
T ss_pred             cccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC---CHHHHHHHHh
Confidence                        477899999999999965 43333322   3455555553

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.17  E-value=1.4e-10  Score=97.53  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=79.6

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEecccc-----HhHHHhcCCC----
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEH-----QSLAQEYGIR----  101 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~~-----~~~~~~~~i~----  101 (411)
                      +..++++.+. ...-++++++|.||++||++|+...+.+.++.+.++ .++.++.|+++..     ..+++++++.    
T Consensus        45 l~~~~G~~~~-l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  123 (186)
T 1jfu_A           45 FEDADGKPKK-LSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGY  123 (186)
T ss_dssp             EECTTSCEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCC
T ss_pred             eEcCCCCEee-HHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCce
Confidence            3344444444 223368899999999999999999999999999998 4689999988865     5677777774    


Q ss_pred             -------------------cccEEEEEe-CCCCCcccCCCCC--cchhHHHHHHHH
Q 015217          102 -------------------GFPTIKVFV-PGKPPVDYQGARD--VKPIAEFALQQI  135 (411)
Q Consensus       102 -------------------~~P~~~~~~-~g~~~~~~~g~~~--~~~l~~~~~~~~  135 (411)
                                         ++|+++++. +|+...++.|..+  .+.+.+++.+.+
T Consensus       124 ~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll  179 (186)
T 1jfu_A          124 FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  179 (186)
T ss_dssp             EECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             EECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHh
Confidence                               899999994 5665667888765  677888887765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.17  E-value=1.5e-10  Score=91.69  Aligned_cols=88  Identities=18%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------------------chhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-----------------------EKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-----------------------~~~l~~~~~v~~~  233 (411)
                      .+++++|.||++||++|+...+.+.++++.+. ++.+..|+++.                       +..+++.|++..+
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  102 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence            45789999999999999999999999999998 79999999843                       4678999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |+++++..++... .+.|..+.+.+.+++.+.+
T Consensus       103 P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A          103 PAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             SEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence            9999997666544 7889999999999988764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.16  E-value=1e-10  Score=107.66  Aligned_cols=92  Identities=21%  Similarity=0.212  Sum_probs=78.8

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE   97 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~   97 (411)
                      -+++++||.||++||++|+...|.+.++.+.+++ .+.++.|+++.                           +..++++
T Consensus        80 l~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           80 LRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            3589999999999999999999999999999986 58999998752                           3578999


Q ss_pred             cCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHHHH
Q 015217           98 YGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus        98 ~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                      |+|.++|+++++ ++|+.+.++.|..+.+.+.+++.+.+..
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e  200 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLND  200 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            999999999888 4566677888988988898888887643

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.15  E-value=2.4e-10  Score=92.55  Aligned_cols=94  Identities=18%  Similarity=0.400  Sum_probs=81.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCch-----------------------hHHhhCcccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEK-----------------------SLMSKFNVQG  232 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~-----------------------~l~~~~~v~~  232 (411)
                      .+++++|.||++||++|+...+.+.++.+.+.+ .+.+..|+++...                       .+++.|++..
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            457899999999999999999999999999987 4999999988764                       6889999999


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcC
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV  270 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~  270 (411)
                      +|+++++..++.....+.|..+.+.+.+++.+....+.
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  146 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEG  146 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred             CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence            99999998666556677788889999999998876543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.15  E-value=1.5e-10  Score=92.90  Aligned_cols=86  Identities=22%  Similarity=0.427  Sum_probs=75.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEeCCC-------------------------chhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-GKVKLGHVDCDS-------------------------EKSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~-~~~~f~~v~~~~-------------------------~~~l~~~~~v  230 (411)
                      .+++++|.||++||++|+...+.+.++++.+. ..+.+..|+++.                         +..+++.|++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            56799999999999999999999999999998 469999998853                         5689999999


Q ss_pred             ccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          231 QGFPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       231 ~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      ..+|+++++..++.....+.|..+.+.+.+++
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            99999999976665567788999999988876

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.14  E-value=1.4e-10  Score=93.45  Aligned_cols=91  Identities=16%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccc--cHhHHHhcCCCcccEEEEEeC--CCCCcc
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKVFVP--GKPPVD  117 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~~--g~~~~~  117 (411)
                      ..++++++|+||++||..|+.+....   .++++.++.++.+..+|.+.  ...+.++|++.++|+++++..  |+.+.+
T Consensus        39 k~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             HHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence            45689999999999999999998765   66777776678888998874  356899999999999999965  445666


Q ss_pred             cCCCCCcchhHHHHHHHHH
Q 015217          118 YQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       118 ~~g~~~~~~l~~~~~~~~~  136 (411)
                      ..| .+++.+++++.+.+.
T Consensus       119 ~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A          119 WHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             ESS-CCHHHHHHHHHHHHH
T ss_pred             cCC-CCHHHHHHHHHHHHH
Confidence            666 899999888887764

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.14  E-value=8.1e-11  Score=88.15  Aligned_cols=77  Identities=14%  Similarity=0.259  Sum_probs=67.3

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHH
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIE  259 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~  259 (411)
                      ..+++|+++||++|+.+.+.+.+++..+.  +.|..+|.+.+++++++||+. +|++++|.++.  .+ ..|.++.+.|.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~--~v-~~g~~~~~~L~  103 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDK--EL-CHYFLDSDVIG  103 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTE--EE-ECSSCCCHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCE--EE-EecCCCHHHHH
Confidence            56999999999999999999999999875  889999999999999999997 99999887654  22 45888888988


Q ss_pred             HHH
Q 015217          260 SFA  262 (411)
Q Consensus       260 ~fi  262 (411)
                      +|+
T Consensus       104 ~~L  106 (107)
T 2fgx_A          104 AYL  106 (107)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.14  E-value=3.4e-10  Score=91.67  Aligned_cols=91  Identities=20%  Similarity=0.334  Sum_probs=78.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC------------------------chhHHhhCc--
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS------------------------EKSLMSKFN--  229 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~------------------------~~~l~~~~~--  229 (411)
                      .+++++|.||++||++|+...+.+.++++.+.+ .+.+..|+++.                        ...+++.||  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            467999999999999999999999999999965 59999999863                        345778899  


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +..+|+++++..++.....+.|..+.+.+.+++.+...
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999997766667788999999999999987654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.13  E-value=3.3e-10  Score=93.13  Aligned_cols=92  Identities=18%  Similarity=0.428  Sum_probs=79.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHhhC---------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKF---------------------------  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~l~~~~---------------------------  228 (411)
                      .+++++|.||++||++|+...+.+.++++.+.++ +.++.|+++.+...+++|                           
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            4679999999999999999999999999999885 999999998877776666                           


Q ss_pred             ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      ++..+|+++++..++.....+.|..+.+.+.+++.+.+..
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            8999999999976665567788999999999999888753

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.12  E-value=2.4e-10  Score=92.55  Aligned_cols=92  Identities=17%  Similarity=0.356  Sum_probs=78.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------chhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------EKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------~~~l~~~~~v~~~  233 (411)
                      .+++++|.||++||++|+...+.+.++++.+.+ .+.+..|+++.                      +..+++.|++..+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            457999999999999999999999999999987 58999988865                      3478999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      |+++++..++.....+.|..+.+.+.+++.+.+..
T Consensus       105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPG  139 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhh
Confidence            99999966665566778988999999999887643

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.10  E-value=3e-10  Score=91.33  Aligned_cols=92  Identities=13%  Similarity=0.046  Sum_probs=64.9

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHHHHH---HHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCccccc
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKA---ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYE  250 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~---a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~  250 (411)
                      ....+++++|.||++||++|+.+.+.+.+.   ......++..+.+| ++...++.++++.++|++++|+.+++...+..
T Consensus        40 A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~  118 (151)
T 3ph9_A           40 AQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSLTVRADIA  118 (151)
T ss_dssp             HHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTSCBCTTCC
T ss_pred             HHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEec-CCchhhHhhcCCCCCCEEEEECCCCCEEEEEe
Confidence            345688999999999999999999998764   23322244444444 23445788999999999999985555566777


Q ss_pred             CC-------C---CHHHHHHHHHHHh
Q 015217          251 GA-------R---TAGAIESFALEQL  266 (411)
Q Consensus       251 g~-------~---~~~~i~~fi~~~~  266 (411)
                      |.       +   +.+.+.+.+.+.+
T Consensus       119 G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          119 GRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             CSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             CCcCCcccccchhhHHHHHHHHHHHH
Confidence            76       3   3455666666554

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.10  E-value=9.5e-11  Score=96.19  Aligned_cols=95  Identities=13%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             eCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCc---cccccEEEEEc
Q 015217          165 LNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN---VQGFPTILVFG  240 (411)
Q Consensus       165 l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~---v~~~P~i~~~~  240 (411)
                      +++..+.. +.. ..++++|.||++||++|+...|.+.+++..+. ++.|..|+.+.+++++.+|+   +.++|++++++
T Consensus        41 ~~~~~~~~-l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~  118 (167)
T 1z6n_A           41 LPSALTER-LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLD  118 (167)
T ss_dssp             CCHHHHHH-HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             CCHHHHHH-HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEEC
Confidence            44444444 333 45789999999999999999999999999875 69999999888888999997   99999999998


Q ss_pred             CCCCCcccccCCCCHHHHHHHHH
Q 015217          241 ADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       241 ~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      +++....++ |... ..+...+.
T Consensus       119 ~~G~~~~~~-g~~p-~~~~~~i~  139 (167)
T 1z6n_A          119 EEFNLLGRF-VERP-QAVLDGGP  139 (167)
T ss_dssp             TTCCEEEEE-ESSC-HHHHHHCH
T ss_pred             CCCCEEEEE-cCCC-HHHHHhHH
Confidence            765533344 5443 34444443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.09  E-value=3e-10  Score=92.23  Aligned_cols=89  Identities=20%  Similarity=0.318  Sum_probs=78.4

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC---------------------------CCchhHHhhCccc
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC---------------------------DSEKSLMSKFNVQ  231 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~---------------------------~~~~~l~~~~~v~  231 (411)
                      ++++|.||++||++|+...+.+.++++.+  .+.+..|++                           +....+++.|++.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            78999999999999999999999999999  688888888                           3667899999999


Q ss_pred             cccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          232 GFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       232 ~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      .+|+++++..++.....+.|..+.+.+.++|.+.....
T Consensus       109 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          109 GQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            99999999766665677889999999999999886543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.08  E-value=5.6e-10  Score=90.37  Aligned_cols=95  Identities=22%  Similarity=0.422  Sum_probs=77.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCch----------------------hHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK----------------------SLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~----------------------~l~~~~~v~~~  233 (411)
                      .+++++|.||++||++|+...+.+.++++.+.++ +.+..|+++.+.                      .+++.|++..+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            4679999999999999999999999999999885 999999988655                      67888999999


Q ss_pred             cEEEEEcCCCCCcccccCC--CCHHHHHHHHHHHhhhcCC
Q 015217          234 PTILVFGADKDSPIPYEGA--RTAGAIESFALEQLETNVA  271 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~--~~~~~i~~fi~~~~~~~~~  271 (411)
                      |+++++..++.....+.|.  .+.+.+.++|.+.+.....
T Consensus       107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC----
T ss_pred             CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccc
Confidence            9999997666555667774  3558999999988765443

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.08  E-value=9.4e-10  Score=89.15  Aligned_cols=93  Identities=23%  Similarity=0.363  Sum_probs=78.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeC-----------------------CCchhHHhhCcccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDC-----------------------DSEKSLMSKFNVQG  232 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~-----------------------~~~~~l~~~~~v~~  232 (411)
                      .+++++|.||++||++|+...+.+.++++.+.++ +.+..|+.                       +.+..+++.|++..
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            5679999999999999999999999999999874 77776653                       34567999999999


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      +|+++++..++.....|.|..+.+.+.+++.+.+...
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~  143 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNS  143 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred             cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence            9999999766665677889999999999999887643

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.08  E-value=6.1e-11  Score=105.36  Aligned_cols=71  Identities=24%  Similarity=0.449  Sum_probs=59.2

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc------ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCc
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      .+|+||++||++|+++.|.++++++.++      .+||+      +++++|++++|+++||+++  +|+   +|.|.++.
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~---~~~G~~~~  268 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---TYTGVRSL  268 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE---EEESCCCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE---EecCCCCH
Confidence            4799999999999999999999986653      35555      3789999999999999654  664   49999999


Q ss_pred             chhHHHHH
Q 015217          125 KPIAEFAL  132 (411)
Q Consensus       125 ~~l~~~~~  132 (411)
                      +++.+|+.
T Consensus       269 ~~L~~~l~  276 (291)
T 3kp9_A          269 EALAVASG  276 (291)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHC
Confidence            99998874

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.07  E-value=5.3e-10  Score=92.52  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC-----CCeEEEEEecccc--------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLK-----GVATVAALDANEH--------------   91 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-----~~i~~~~vd~~~~--------------   91 (411)
                      +...+++.+. ...-++++++|.||++||++ |+...|.+.++.+.++     .++.++.|+++..              
T Consensus        11 l~~~~G~~~~-l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~   89 (171)
T 2rli_A           11 LLDHRGRARC-KADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDF   89 (171)
T ss_dssp             EEETTSCEEE-TTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTT
T ss_pred             EEeCCCCEEe-HHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHc
Confidence            3344444443 22235789999999999998 9999999999999885     4688888888721              


Q ss_pred             --------------HhHHHhcCCCccc---------------EEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHH
Q 015217           92 --------------QSLAQEYGIRGFP---------------TIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus        92 --------------~~~~~~~~i~~~P---------------~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                                    ..+++.||+...|               +++++. +|+...++.|..+.+.+.+.+.+.++.
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  165 (171)
T 2rli_A           90 HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA  165 (171)
T ss_dssp             CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence                          2588899999888               777774 566677788988988999888887653

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.07  E-value=7e-10  Score=95.76  Aligned_cols=106  Identities=19%  Similarity=0.225  Sum_probs=76.7

Q ss_pred             CCCCcEEeCccchhHHHhcCCC-eEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEecc----------------
Q 015217           28 SSSPVVQLTPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDAN----------------   89 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~----------------   89 (411)
                      .+..+..++++.+. ...-.++ +++|.||++||++|+...|.+.++.+.++++ +.++.|+++                
T Consensus        39 P~f~l~~~~G~~v~-l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~  117 (218)
T 3u5r_E           39 ADFVLPDAGGNLFT-LAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAE  117 (218)
T ss_dssp             CCCCEECTTCCEEC-GGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHH
T ss_pred             CCcEeECCCCCEEe-HHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHH
Confidence            34445555665555 2223466 5999999999999999999999999999874 999999983                


Q ss_pred             -------------ccHhHHHhcCCCcccEEEEEeCCCCCcccCCC-----------CCcchhHHHHHHHH
Q 015217           90 -------------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA-----------RDVKPIAEFALQQI  135 (411)
Q Consensus        90 -------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-----------~~~~~l~~~~~~~~  135 (411)
                                   ....+++.|++.++|++++++..+. +.|.|.           .+.+.|.+.+.+.+
T Consensus       118 ~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~-i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll  186 (218)
T 3u5r_E          118 VKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERR-LVYHGQFDDARPGNGKDVTGADLRAAVDAVL  186 (218)
T ss_dssp             HHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTCB-EEEEECSSSCCTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCCc-EEEeccccccccccccccCHHHHHHHHHHHH
Confidence                         3567999999999999999954333 234432           34455666655543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.06  E-value=3.4e-10  Score=91.15  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=75.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCchh-------------------------HHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKS-------------------------LMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~-------------------------l~~~~~v  230 (411)
                      .+++++|.||++||++|+...+.+.++.+.+.++ +.+..|+++.+..                         +++.|++
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            4679999999999999999999999999999886 9999999987766                         8999999


Q ss_pred             ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          231 QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       231 ~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ..+|+++++..++.....+.|..+.+.+.+.+.+.+
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            999999999766655666777766666666665543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.06  E-value=1.6e-10  Score=83.49  Aligned_cols=74  Identities=12%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      ++.|+++||++|+.+.+.+.+++..+     +..||.+.+++++++||+. +|++++ .+|.  .+.  |.++.+.|.++
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~--~v~--g~~~~~~L~~~   71 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGR--ELD--WPFDAPRLRAW   71 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCC--EEE--SCCCHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCE--EEe--CCCCHHHHHHH
Confidence            78999999999999999999877543     6789999999999999998 999988 5544  332  88899999999


Q ss_pred             HHHHh
Q 015217          262 ALEQL  266 (411)
Q Consensus       262 i~~~~  266 (411)
                      +.+.+
T Consensus        72 l~~~~   76 (87)
T 1ttz_A           72 LDAAP   76 (87)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            87654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.06  E-value=7.8e-10  Score=87.57  Aligned_cols=88  Identities=19%  Similarity=0.296  Sum_probs=75.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC----------------------------CCchhHHhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC----------------------------DSEKSLMSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~----------------------------~~~~~l~~~~  228 (411)
                      .+++++|.||++||++|+...+.+.++++.+...+.+..+++                            +.+..+++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            467899999999999999999999999999877888888843                            3345689999


Q ss_pred             ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      ++..+|+++++..++.....+.|..+.+.+.+++.+
T Consensus       101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence            999999999997666656778898999999888765

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.06  E-value=7.4e-10  Score=90.51  Aligned_cols=91  Identities=16%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             CCCeEEEEEeCCCChhhhh-hhHHHHHHHHHhcCC-eEEEEEeCC----------------------------Cchh---
Q 015217          177 SKDLWIVEFFAPWCGHCKK-LAPEWKKAANNLKGK-VKLGHVDCD----------------------------SEKS---  223 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~-~~~~~~~~a~~~~~~-~~f~~v~~~----------------------------~~~~---  223 (411)
                      .+++++|.||++||++|+. ..+.+.++++.+.++ +.+..|+++                            ....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            4689999999999999999 599999999999875 899888852                            2333   


Q ss_pred             ---HHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          224 ---LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       224 ---l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                         +++.|++..+|+++++..++.....+.|..+.+.+.+.|.+.+.
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence               88999999999999997666656777899999999999988764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.05  E-value=1.2e-09  Score=89.56  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             CCcEEeCccchhHHHhcCCCe-EEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-----------------
Q 015217           30 SPVVQLTPNNFKSKVLNANGV-VLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------------   89 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~-~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-----------------   89 (411)
                      ..+..++++.+. ...-++++ ++|.|| ++||++|+...|.+.++.+.+++ .+.++.|+++                 
T Consensus        11 f~l~~~~G~~~~-l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~   89 (161)
T 3drn_A           11 FEGIADNGEKIS-LSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFI   89 (161)
T ss_dssp             CEEEETTSCEEE-GGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSE
T ss_pred             eEeecCCCCEEE-HHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCce
Confidence            334455555554 22225665 999999 99999999999999999999986 4888888887                 


Q ss_pred             ----ccHhHHHhcCCCc----ccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217           90 ----EHQSLAQEYGIRG----FPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKAL  138 (411)
Q Consensus        90 ----~~~~~~~~~~i~~----~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~  138 (411)
                          ...++++.|++.+    +|+++++. +|+....+.|........+-+.+.++..
T Consensus        90 ~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A           90 LVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             EEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             EEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence                4567899999999    99998885 5665667778555554444444444444

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.05  E-value=1.6e-10  Score=92.64  Aligned_cols=94  Identities=11%  Similarity=0.070  Sum_probs=66.2

Q ss_pred             EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccH--------------------
Q 015217           34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQ--------------------   92 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~--------------------   92 (411)
                      ..+++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ ++.++.|+++.+.                    
T Consensus        19 ~~~g~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d   97 (143)
T 4fo5_A           19 LGNDAKAS-FHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHE   97 (143)
T ss_dssp             -----CCC-SCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cCCCCEEE-HHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeec
Confidence            44444444 2223678999999999999999999999999999975 5888888887432                    


Q ss_pred             ------hHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHH
Q 015217           93 ------SLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        93 ------~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~  131 (411)
                            .+++.|++.++|+.+++. +|+.+.+..   +.+.+.+.+
T Consensus        98 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l  140 (143)
T 4fo5_A           98 GLGKESELYKKYDLRKGFKNFLINDEGVIIAANV---TPEKLTEIL  140 (143)
T ss_dssp             TTGGGSHHHHHTTGGGCCCEEEECTTSBEEEESC---CHHHHHHHH
T ss_pred             ccccchHHHHHcCCCCCCcEEEECCCCEEEEccC---CHHHHHHHH
Confidence                  577889999999988887 454433332   344444443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.04  E-value=5.5e-10  Score=91.68  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=78.1

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC-----CeEEEEEecccc---------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKG-----VATVAALDANEH---------------   91 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~i~~~~vd~~~~---------------   91 (411)
                      ...+++.+. ...-++++++|.||++||++ |+...|.+.++.+.+++     ++.++.|+++..               
T Consensus         9 ~~~~G~~~~-l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~   87 (164)
T 2ggt_A            9 TTHTGERKT-DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFS   87 (164)
T ss_dssp             EETTSCEEE-GGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTC
T ss_pred             EeCCCCEEe-HHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcC
Confidence            344444443 22235899999999999998 99999999999998863     688888887642               


Q ss_pred             -------------HhHHHhcCCCccc---------------EEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           92 -------------QSLAQEYGIRGFP---------------TIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        92 -------------~~~~~~~~i~~~P---------------~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                   ..+++.||+...|               +++++. +|+...++.|..+.+.+.+.+.+.+
T Consensus        88 ~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A           88 PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence                         1488899999999               666664 5666777888888888888887765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.03  E-value=2.1e-10  Score=94.22  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=81.1

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEe----------------------
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVD----------------------  217 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~----------------------  217 (411)
                      .+..++.+.+... ...+++++|.||++||++|+...+.+.++++.+.. .+.+..|+                      
T Consensus        22 ~l~~~~g~~~~~~-~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPASVY-LKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGGGG-CCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEeeHH-HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            4666666655542 33467899999999999999999999999998743 34444443                      


Q ss_pred             ------CCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          218 ------CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       218 ------~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                            ++.+..++++|++..+|+++++..++.....+.|..+.+.+.+++.+.+
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                  3445679999999999999999666655667789899999999988765

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.02  E-value=1.4e-09  Score=87.18  Aligned_cols=105  Identities=22%  Similarity=0.260  Sum_probs=80.4

Q ss_pred             CCCCceEeCChhHHHHhcCCcc---EEE----------eHHHHHHHHHHhhcCccEEEEecC--CCchhhHHHhCCCCCC
Q 015217          271 APPEVTELTSQDVMEEKCGSAA---ICF----------YLEMLLSVAEKFKRGHYSFVWAAA--GKQPDLENRVGVGGYG  335 (411)
Q Consensus       271 ~~~~v~~l~~~~~~~~~~~~~~---~~~----------~~~~~~~~a~~~~~~~~~f~~i~~--~~~~~~~~~f~~~~~~  335 (411)
                      ..|.|.+++..+....+.++.+   ++|          +.+.++.+|++|+++ +.|+++|.  .++...+..||++..+
T Consensus        12 ~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgk-i~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           12 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             ---CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTT-CEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             cCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCc-eEEEEEecchHhHHHHHHHcCCCccc
Confidence            4588888888776555554443   223          458899999999998 99999998  5566789999999878


Q ss_pred             CCeEEEeec--CCCccccCCCCCChhHHHHHHHHHccCCCCCC
Q 015217          336 YPALVALNV--KKGVYTPLKSAFELEHIVEFVKEAGRGGKGNL  376 (411)
Q Consensus       336 ~P~l~v~~~--~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~  376 (411)
                      .|+++|++.  ...+|....++++.+.|++|+.++++|++++.
T Consensus        91 ~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~  133 (147)
T 3bj5_A           91 CPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPH  133 (147)
T ss_dssp             CSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEE
T ss_pred             CCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCcccc
Confidence            999999985  34566433488999999999999999987544

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.01  E-value=2.3e-09  Score=86.85  Aligned_cols=88  Identities=19%  Similarity=0.339  Sum_probs=72.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------------------------chhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------------------------EKSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------------------------~~~l~~~~~v  230 (411)
                      .+++++|.||++||++|+...+.+.++++.+.++ +.+..|+++.                         ...+++.|++
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            4579999999999999999999999999999875 9999999886                         5678999999


Q ss_pred             ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          231 QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       231 ~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ..+|+++++..++.....+   .+.+++.+++.+.+.
T Consensus       108 ~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             CSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHT
T ss_pred             CcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHh
Confidence            9999999996555333333   345678888877654

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.01  E-value=1.5e-09  Score=88.45  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=76.9

Q ss_pred             CCCeEEEEEeCCCChhhhhh-hHHHHHHHHHhcC-CeEEEEEeCC----------------------------Cch----
Q 015217          177 SKDLWIVEFFAPWCGHCKKL-APEWKKAANNLKG-KVKLGHVDCD----------------------------SEK----  222 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~-~~~~~~~a~~~~~-~~~f~~v~~~----------------------------~~~----  222 (411)
                      ..++++|.||++||++|+.. .+.+.++++.+.+ .+.|..|+++                            ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            46799999999999999996 9999999999985 5888888853                            112    


Q ss_pred             -hHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          223 -SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       223 -~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                       .+++.|++..+|+++++..++.....+.|..+.+.+.+.|.+.+.
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence             488999999999999997666556677899999999999988764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.56  E-value=3.6e-11  Score=96.40  Aligned_cols=68  Identities=22%  Similarity=0.514  Sum_probs=57.9

Q ss_pred             CCC-eEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEecccc-------------------------HhHHHh
Q 015217           47 ANG-VVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEH-------------------------QSLAQE   97 (411)
Q Consensus        47 ~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~i~~~~vd~~~~-------------------------~~~~~~   97 (411)
                      +++ +++|.||++||++|+.+.|.+.++++.++   .++.++.|+++..                         ..++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            466 99999999999999999999999999883   3677888887754                         368999


Q ss_pred             cCCCcccEEEEEe-CCCC
Q 015217           98 YGIRGFPTIKVFV-PGKP  114 (411)
Q Consensus        98 ~~i~~~P~~~~~~-~g~~  114 (411)
                      |++.++|+++++. +|+.
T Consensus       104 ~~v~~~P~~~lid~~G~i  121 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTL  121 (143)
Confidence            9999999999997 5654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=3.8e-11  Score=98.26  Aligned_cols=101  Identities=19%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHH-HHHHhC--CCeEEEEEeccccHhHHHhcC---------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK-AATVLK--GVATVAALDANEHQSLAQEYG---------   99 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~-~~~~~~--~~i~~~~vd~~~~~~~~~~~~---------   99 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.+ +...+.  .++.++.|+++..++.+++|.         
T Consensus        18 l~~~~g~~~~-l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~   96 (159)
T 2ls5_A           18 ITLTDGKQVT-LSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPL   96 (159)
Confidence            3444555444 222367899999999999999999999998 888776  368888898886654444333         


Q ss_pred             ---------------CCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHH
Q 015217          100 ---------------IRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       100 ---------------i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                                     +.++|+++++ ++|+.+.++.| .+.+.+.+++.+.
T Consensus        97 ~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l  146 (159)
T 2ls5_A           97 GLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQI  146 (159)
Confidence                           5679999988 56766666666 4556666666543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.99  E-value=1.6e-10  Score=89.08  Aligned_cols=83  Identities=19%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-----HhHHHhcCCCcccEEEEEeCCCCCcc
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-----QSLAQEYGIRGFPTIKVFVPGKPPVD  117 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~P~~~~~~~g~~~~~  117 (411)
                      .+.. ++++++ ||++||++|+.+.|.+.++..    .+.++.+|.+.+     ..++++||+.++|++  |.+|+.+..
T Consensus        15 ~~~~-~~~vv~-f~a~~C~~C~~~~~~l~~~~~----~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~   86 (116)
T 2e7p_A           15 ELAS-SAPVVV-FSKTYCGYCNRVKQLLTQVGA----SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGG   86 (116)
T ss_dssp             HHHT-SSSEEE-EECTTCHHHHHHHHHHHHHTC----CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEEC
T ss_pred             HHHc-CCCEEE-EECCCChhHHHHHHHHHHcCC----CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECC
Confidence            3433 455555 999999999999999988753    356666666655     569999999999998  457766666


Q ss_pred             cCCCC---CcchhHHHHHH
Q 015217          118 YQGAR---DVKPIAEFALQ  133 (411)
Q Consensus       118 ~~g~~---~~~~l~~~~~~  133 (411)
                      +.|..   +.+.+.+++.+
T Consensus        87 ~~~~~~~~~~~~l~~~l~~  105 (116)
T 2e7p_A           87 CDTVVEKHQRNELLPLLQD  105 (116)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHhCChHHHHHHH
Confidence            65554   66677777764

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.99  E-value=1.6e-09  Score=87.11  Aligned_cols=87  Identities=17%  Similarity=0.319  Sum_probs=71.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHh-cCC-eEEEEEeCCC-------------------------chhHHhhCc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNL-KGK-VKLGHVDCDS-------------------------EKSLMSKFN  229 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~-~~~-~~f~~v~~~~-------------------------~~~l~~~~~  229 (411)
                      .+++++|.||++||++|+...+.+.++++.+ .++ +.+..|+++.                         +..+++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4579999999999999999999999999999 665 9999998876                         347899999


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +..+|+++++..++.  +.+... +.+.+.+++.+.+
T Consensus       112 v~~~P~~~lid~~G~--i~~~~~-~~~~l~~~l~~ll  145 (148)
T 3fkf_A          112 ILTLPTNILLSPTGK--ILARDI-QGEALTGKLKELL  145 (148)
T ss_dssp             CCSSSEEEEECTTSB--EEEESC-CHHHHHHHHHHHC
T ss_pred             CCCcCEEEEECCCCe--EEEecC-CHHHHHHHHHHHH
Confidence            999999999966553  333222 7888888887764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.98  E-value=1.2e-09  Score=89.59  Aligned_cols=78  Identities=14%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCCCchhHHhhC--------cccccc
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMSKF--------NVQGFP  234 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~l~~~~--------~v~~~P  234 (411)
                      .++.+.. ....+++++|.||++||++|+.+.+ .|  .++++.+.+++.++.||.+..+++.+.|        |+.++|
T Consensus        28 ~~ea~~~-A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~P  106 (173)
T 3ira_A           28 GEEAFEK-ARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWP  106 (173)
T ss_dssp             SHHHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSS
T ss_pred             CHHHHHH-HHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCc
Confidence            3455555 4567889999999999999999988 44  5778888778999999999999999888        999999


Q ss_pred             EEEEEcCCCC
Q 015217          235 TILVFGADKD  244 (411)
Q Consensus       235 ~i~~~~~~~~  244 (411)
                      ++++++.+++
T Consensus       107 t~v~l~~dG~  116 (173)
T 3ira_A          107 LNIIMTPGKK  116 (173)
T ss_dssp             EEEEECTTSC
T ss_pred             ceeeECCCCC
Confidence            9999975553

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.98  E-value=2.1e-09  Score=89.99  Aligned_cols=90  Identities=13%  Similarity=0.329  Sum_probs=75.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-e------EEEEEeCCC-chhHHhhC--------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-V------KLGHVDCDS-EKSLMSKF--------------------  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~------~f~~v~~~~-~~~l~~~~--------------------  228 (411)
                      ..++++|.||++||++|+...+.+.++++.+.++ +      .|..|+++. +...+++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            4579999999999999999999999999999875 7      999999987 56555554                    


Q ss_pred             -----ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          229 -----NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       229 -----~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                           ++..+|+++++..++.....+.|..+.+.|.+++.+.+
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                 67889998888766665667889899999999998765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.98  E-value=1.3e-09  Score=90.23  Aligned_cols=101  Identities=20%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-----------ccHhHH-----
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLA-----   95 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-----------~~~~~~-----   95 (411)
                      ..++++.+. ...-++++++|.||++||++|+ ..|.+.++.+.+++ .+.++.|+++           ...+++     
T Consensus        18 ~d~~G~~~~-l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~   95 (171)
T 3cmi_A           18 VDKKGQPFP-FDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYG   95 (171)
T ss_dssp             BBTTSCBCC-GGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------C
T ss_pred             EcCCCCEec-HHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccC
Confidence            344444444 2223689999999999999999 99999999999986 4888888773           111222     


Q ss_pred             -------------------------HhcCCCccc------EEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           96 -------------------------QEYGIRGFP------TIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        96 -------------------------~~~~i~~~P------~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                               +.|++.++|      +++++ ++|+...++.|..+.+.+.+.+.+.+
T Consensus        96 ~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (171)
T 3cmi_A           96 VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL  167 (171)
T ss_dssp             CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence                                     246888999      76677 55766778889899999999988775

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.96  E-value=2.8e-09  Score=87.89  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=74.6

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c----HhHH-Hhc-
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H----QSLA-QEY-   98 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~----~~~~-~~~-   98 (411)
                      ..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++.       .    .+++ +++ 
T Consensus        17 ~~~~G~~~~-l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T 2v1m_A           17 KDINGVDVS-LEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYG   95 (169)
T ss_dssp             EBTTSCEEE-GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             ecCCCCCcc-HHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcC
Confidence            344444444 2223689999999999999999999999999999986 48999998852       1    2231 332 


Q ss_pred             ----------------------------C-----CCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217           99 ----------------------------G-----IRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        99 ----------------------------~-----i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                                  |     +.++|+++++. +|+.+.++.|..+.+.+.+.+.+.+
T Consensus        96 ~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A           96 VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                                        3     33457777774 5666778889889999999888775

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.95  E-value=1e-09  Score=90.48  Aligned_cols=88  Identities=13%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC-----------------------CCchhHHhhCcccc
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-----------------------DSEKSLMSKFNVQG  232 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-----------------------~~~~~l~~~~~v~~  232 (411)
                      ..+++++|.||++||++|+...+.+.++++.   .+.+..|++                       +.+..+++.|++..
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  125 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  125 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence            3567899999999999999999999999886   466766663                       44557889999999


Q ss_pred             ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +|+.+++..++.....+.|..+.+.+.+++.+.+
T Consensus       126 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          126 APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            9988888666655567789889999988887765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.94  E-value=4.3e-09  Score=86.42  Aligned_cols=87  Identities=24%  Similarity=0.467  Sum_probs=73.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC------------------Cc-----------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD------------------SE-----------------  221 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~------------------~~-----------------  221 (411)
                      ..++++|.||++||++|+...+.+.++.+.+. .+.|..|+++                  ..                 
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            45799999999999999999999999999998 8999999987                  33                 


Q ss_pred             -----hhHHhhCccccccEEEEEcCCCCCcccccCCC-CHHHHHHHHHHHh
Q 015217          222 -----KSLMSKFNVQGFPTILVFGADKDSPIPYEGAR-TAGAIESFALEQL  266 (411)
Q Consensus       222 -----~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~-~~~~i~~fi~~~~  266 (411)
                           ..+++.|++..+|+++++..++.  +.+.|.. +.+.+.+.+.+.+
T Consensus       115 ~~~d~~~~~~~~~v~~~P~~~lid~~G~--i~~~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSIDYIVIMDKSSN--VLYAGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             EEECCSHHHHHTTCCSSSEEEEEETTCC--EEEEEESCCHHHHHHHHHHC-
T ss_pred             EEeChHHHHHHhCCCCceEEEEEcCCCc--EEEeCCCCCHHHHHHHHHHHh
Confidence                 27889999999999999976653  3337888 8899998887653

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.94  E-value=2.5e-09  Score=90.20  Aligned_cols=103  Identities=18%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c----HhHH-Hh-
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H----QSLA-QE-   97 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~----~~~~-~~-   97 (411)
                      +..++.+.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++.       .    .+++ ++ 
T Consensus        33 l~~~~G~~~~-l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~  111 (190)
T 2vup_A           33 VLDADHKPYN-LVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKF  111 (190)
T ss_dssp             CBBTTSSBCC-GGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred             EEcCCCCEEE-HHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhc
Confidence            4445555554 2223688999999999999999999999999999986 48999998862       1    1233 22 


Q ss_pred             ----------------------------cCCCccc------EEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           98 ----------------------------YGIRGFP------TIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        98 ----------------------------~~i~~~P------~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                                  +++.++|      +.+++ ++|+.+.++.|..+.+.+.+.+.+.+
T Consensus       112 ~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  184 (190)
T 2vup_A          112 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL  184 (190)
T ss_dssp             CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred             CCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                                        3777888      66666 55766778889888888888887766

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.94  E-value=5.8e-10  Score=92.33  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEecccc----------------------------Hh
Q 015217           47 ANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKG----VATVAALDANEH----------------------------QS   93 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~i~~~~vd~~~~----------------------------~~   93 (411)
                      ++++++|.||++||++ |+...|.+.++.+.+++    ++.++.|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            6889999999999997 99999999999998873    689999998742                            35


Q ss_pred             HHHhcCC---------------CcccEEEEEeCCCCCcccCCCC--CcchhHHHHHH
Q 015217           94 LAQEYGI---------------RGFPTIKVFVPGKPPVDYQGAR--DVKPIAEFALQ  133 (411)
Q Consensus        94 ~~~~~~i---------------~~~P~~~~~~~g~~~~~~~g~~--~~~~l~~~~~~  133 (411)
                      +++.|++               .++|+++++++|+...++.|..  +.+.+.+.+.+
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~  170 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQA  170 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHH
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHH
Confidence            6666664               5789999999665566777777  77777777654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.94  E-value=5.8e-10  Score=79.64  Aligned_cols=61  Identities=18%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcCCCcccEEEEEeCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      -++.||++||++|+.+.+.++++.+.+...+.++.+|.+ +..+++++||+.++|++++  +|+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            378899999999999999999988765445666666665 5778999999999999876  665

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.93  E-value=4.1e-09  Score=85.91  Aligned_cols=89  Identities=13%  Similarity=0.335  Sum_probs=74.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------chhHHhhCccccccEE
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------EKSLMSKFNVQGFPTI  236 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------~~~l~~~~~v~~~P~i  236 (411)
                      .+++++|.||++||++|+...+.+.++++.+.+ .+.+..|+++.                   +..+++.|++..+|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            457999999999999999999999999999984 69999999876                   5789999999999999


Q ss_pred             EEEcCCCCCcccccCCC--CHHHHHHHHHHH
Q 015217          237 LVFGADKDSPIPYEGAR--TAGAIESFALEQ  265 (411)
Q Consensus       237 ~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~  265 (411)
                      +++..++.....+.|..  +..++.+.+.+.
T Consensus       120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~  150 (158)
T 3hdc_A          120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKSL  150 (158)
T ss_dssp             EEECTTSBEEEEEESCCCTTSHHHHHHHHTT
T ss_pred             EEEcCCCCEEEEEeCCCccchHHHHHHHHhh
Confidence            99977776567777764  456666666554

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.93  E-value=2.1e-09  Score=88.74  Aligned_cols=102  Identities=14%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccc-------c----HhHHH-hc-
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE-------H----QSLAQ-EY-   98 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~-------~----~~~~~-~~-   98 (411)
                      ..++.+.+. ...-++++++|.||++||++|+...|.+.++.+.++++ +.++.|+++.       .    .++++ ++ 
T Consensus        18 ~~~~g~~~~-l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T 2p5q_A           18 KDAKENDVD-LSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFK   96 (170)
T ss_dssp             EBTTSCEEE-GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTC
T ss_pred             EcCCCCEec-HHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcC
Confidence            344444444 22236899999999999999999999999999999874 9999998852       1    23344 33 


Q ss_pred             ----------------------------CC--Cccc---EEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           99 ----------------------------GI--RGFP---TIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        99 ----------------------------~i--~~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                                  ++  .++|   +.+++ ++|+...++.|..+.+.+.+.+.+.+
T Consensus        97 ~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (170)
T 2p5q_A           97 SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL  167 (170)
T ss_dssp             CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHT
T ss_pred             CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHh
Confidence                                        34  5678   77777 45766778889989999999888764

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.92  E-value=3.5e-09  Score=85.80  Aligned_cols=91  Identities=21%  Similarity=0.380  Sum_probs=74.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-----------------------hhHHhhCcccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE-----------------------KSLMSKFNVQG  232 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~-----------------------~~l~~~~~v~~  232 (411)
                      .+++++|.||++||++|+...+.+.++++.+.+ .+.+..|+++.+                       ..+++.|++..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            467999999999999999999999999999987 689999988765                       34888999999


Q ss_pred             ccEEEEEcCCCCCcccccCCC--CHHHHHHHHHHHhh
Q 015217          233 FPTILVFGADKDSPIPYEGAR--TAGAIESFALEQLE  267 (411)
Q Consensus       233 ~P~i~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~~~  267 (411)
                      +|+++++..++.....+.|..  +.+++.++|.+...
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence            999988876665556677764  66788888876543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.91  E-value=2.2e-09  Score=87.19  Aligned_cols=89  Identities=21%  Similarity=0.405  Sum_probs=72.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------------------CchhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------------------SEKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------------------~~~~l~~~~~v~~~  233 (411)
                      .+++++|.||++||++|+...+.+.++++.  +++.|..|+++                       ....+++.|++..+
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            367899999999999999999999998876  55888877753                       34468889999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      |+++++..++.....+.|..+.+.+.+++.+.+.
T Consensus       119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          119 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            9888886666555667898899999988877653

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.91  E-value=3.8e-09  Score=84.34  Aligned_cols=86  Identities=13%  Similarity=0.316  Sum_probs=69.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcC-CeEEEEEeCCCchhH------------------------HhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKK---AANNLKG-KVKLGHVDCDSEKSL------------------------MSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~---~a~~~~~-~~~f~~v~~~~~~~l------------------------~~~~  228 (411)
                      ..++++|.||++||++|+...+.+.+   +.+.+.+ .+.+..|+.+.+...                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            46799999999999999999999888   8888866 499999988765543                        3489


Q ss_pred             ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++..+|+++++..++  .+.+ +..+.+++.+++.+.
T Consensus       106 ~v~~~P~~~lid~~G--~i~~-~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDGRK--RVIL-KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECTTC--BEEE-CSCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCC--CEEe-cCCCHHHHHHHHHHH
Confidence            999999999997655  3344 567889999988764

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.91  E-value=4.5e-09  Score=87.72  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=79.6

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c----HhHHHh-c
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H----QSLAQE-Y   98 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~----~~~~~~-~   98 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++.       .    .+++++ +
T Consensus        23 l~d~~G~~v~-l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~  101 (180)
T 3kij_A           23 VKDAKGRTVS-LEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNY  101 (180)
T ss_dssp             EEBTTSCEEE-GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred             EecCCCCEec-HHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhc
Confidence            3444555554 2233688999999999999999999999999999987 48888887653       2    345666 5


Q ss_pred             CCC--------------------------cccE----EEEE-eCCCCCcccCCCCCcchhHHHHHHHHHHHHH
Q 015217           99 GIR--------------------------GFPT----IKVF-VPGKPPVDYQGARDVKPIAEFALQQIKALLK  140 (411)
Q Consensus        99 ~i~--------------------------~~P~----~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~  140 (411)
                      ++.                          +.|+    .+++ ++|+.+.+|.|..+.+.+.+.+.+.++....
T Consensus       102 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~~  174 (180)
T 3kij_A          102 GVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVII  174 (180)
T ss_dssp             CCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHHH
T ss_pred             CCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            532                          1465    4555 5676677889999999999999888766553

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.91  E-value=4.5e-09  Score=85.12  Aligned_cols=84  Identities=10%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCchh-----------------------HHhhCccccc
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKS-----------------------LMSKFNVQGF  233 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~-----------------------l~~~~~v~~~  233 (411)
                      .++++|.||++||++|+...+.+.++++.+.++ +.+..|+++....                       +++.|++..+
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  114 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL  114 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence            578999999999999999999999999999875 9999999887654                       8889999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      |+++++..++.....+.|..+.++...-
T Consensus       115 P~~~lid~~G~i~~~~~g~~~~e~~~~~  142 (152)
T 2lrt_A          115 PSVFLVNRNNELSARGENIKDLDEAIKK  142 (152)
T ss_dssp             SEEEEEETTTEEEEETTTCSCHHHHHHH
T ss_pred             ceEEEECCCCeEEEecCCHHHHHHHHHH
Confidence            9999997666556677787666554443

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-08  Score=79.18  Aligned_cols=97  Identities=15%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             CCcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217          160 NESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       160 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~  238 (411)
                      ..+..|++ .++.++ ...+.+++|.|+++||++|   .+.|.++|+.+ ..+.|+.++   ++++++++++. .|++++
T Consensus        21 ~~~~~i~s~~e~e~f-i~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~vvl   91 (124)
T 2l4c_A           21 QEPTWLTDVPAAMEF-IAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTICL   91 (124)
T ss_dssp             CCCEECCSHHHHHHH-HHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCEEE
T ss_pred             CcceEcCCHHHHHHH-HhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeEEE
Confidence            33455754 556664 5678899999999999876   78999999999 789999865   68899999999 699999


Q ss_pred             EcCCCCCcccccC----CCCHHHHHHHHHHH
Q 015217          239 FGADKDSPIPYEG----ARTAGAIESFALEQ  265 (411)
Q Consensus       239 ~~~~~~~~~~y~g----~~~~~~i~~fi~~~  265 (411)
                      |+...+....|.|    ..+.+.|.+||..+
T Consensus        92 fkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           92 FRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9987666778886    78999999999876

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.89  E-value=3e-09  Score=89.42  Aligned_cols=89  Identities=15%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~   99 (411)
                      ++++++|.|| ++||++|+...|.+.++.+.+++ ++.++.|+++.                         +..+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            5789999999 99999999999999999999875 58888888764                         346888999


Q ss_pred             CC------cccEEEEEe-CCCCCcccCCCC----CcchhHHHHHHHH
Q 015217          100 IR------GFPTIKVFV-PGKPPVDYQGAR----DVKPIAEFALQQI  135 (411)
Q Consensus       100 i~------~~P~~~~~~-~g~~~~~~~g~~----~~~~l~~~~~~~~  135 (411)
                      +.      ++|++++++ +|+...++.|..    +.+.+.+.+.+..
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99      999999995 566566666654    5677777776654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.88  E-value=1.2e-08  Score=81.95  Aligned_cols=102  Identities=11%  Similarity=0.149  Sum_probs=78.6

Q ss_pred             cchHHHH---hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEE
Q 015217          168 SNFDELV---LKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       168 ~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~  239 (411)
                      .++.+.+   .+.+++++|.|+++||..|+.+....   .++++.++.++.+..+|.++.  ..+.++|++.++|+++++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fl  108 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSIL  108 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEE
Confidence            3444443   34578999999999999999997755   667777766889999998653  358899999999999999


Q ss_pred             cCC-CCCcccccCCCCHHHHHHHHHHHhhhcC
Q 015217          240 GAD-KDSPIPYEGARTAGAIESFALEQLETNV  270 (411)
Q Consensus       240 ~~~-~~~~~~y~g~~~~~~i~~fi~~~~~~~~  270 (411)
                      ... ++....+.| .+.+++..++.+.+..+.
T Consensus       109 d~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~  139 (153)
T 2dlx_A          109 DPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG  139 (153)
T ss_dssp             CTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred             eCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence            765 444444555 899999998888776543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.88  E-value=1.4e-09  Score=81.14  Aligned_cols=78  Identities=13%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      ...+.++.|+++||++|+.+.+.+++++    ..+.+..+|++  ++++++++|| .++|++  +.+|+..  ..+..+.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~----~~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~--~~~g~~~   84 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYK----DRFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL--MMHRVNT   84 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTS----SSSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE--EESSCCH
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhh----hCCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE--EecCCCH
Confidence            4567899999999999999999988754    23899999998  7889999999 999986  3466542  3455777


Q ss_pred             chhHHHHHH
Q 015217          125 KPIAEFALQ  133 (411)
Q Consensus       125 ~~l~~~~~~  133 (411)
                      +.|.+++.+
T Consensus        85 ~~l~~~l~~   93 (100)
T 1wjk_A           85 SKLEKQLRK   93 (100)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHH
Confidence            777777754

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.88  E-value=3.3e-09  Score=89.20  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=76.0

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c-HhH---HH-
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H-QSL---AQ-   96 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~-~~~---~~-   96 (411)
                      ..+..++++.+. ...-+++++||.||++||++|+...|.+.++.+.+++ .+.++.|+++.       . .++   ++ 
T Consensus        29 f~l~d~~G~~~~-l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~  107 (187)
T 3dwv_A           29 FEVLDADHKPYN-LVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCT  107 (187)
T ss_dssp             SCCBBTTSCBCC-GGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCB
T ss_pred             eEEEcCCCCEee-HHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHh
Confidence            334455555555 3334689999999999999999999999999999987 48888887752       1 111   11 


Q ss_pred             --------------------------------hcCCCccc---EEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           97 --------------------------------EYGIRGFP---TIKVF-VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        97 --------------------------------~~~i~~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                                      .+++..+|   +++++ ++|+...++.|..+.+.+.+.+.+.+
T Consensus       108 ~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL  182 (187)
T 3dwv_A          108 KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL  182 (187)
T ss_dssp             CCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC
T ss_pred             ccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                                            12344566   77777 45666778889989998888887765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.87  E-value=4.3e-09  Score=103.02  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=78.6

Q ss_pred             EeCccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCC
Q 015217           34 QLTPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPG  112 (411)
Q Consensus        34 ~l~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  112 (411)
                      .++++.++ .+. ..++..++.||++||++|+.+.|.+++++..++ ++.+.++|.+..++++++|+|.++|++++  +|
T Consensus       103 ~~~~~~~~-~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g  178 (521)
T 1hyu_A          103 KEAQSLLE-QIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NG  178 (521)
T ss_dssp             CSCHHHHH-HHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT
T ss_pred             CCCHHHHH-HHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE--CC
Confidence            56766666 443 346678999999999999999999999998876 79999999999999999999999999866  66


Q ss_pred             CCCcccCCCCCcchhHHHHHH
Q 015217          113 KPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      +.+  ..|..+.+.+.+++.+
T Consensus       179 ~~~--~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          179 KEF--GQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             EEE--EESCCCHHHHHHHHCC
T ss_pred             EEE--ecCCCCHHHHHHHHhh
Confidence            543  3488888888888754

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.87  E-value=4.2e-09  Score=86.02  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             cEEeCccchhHHHhcCCC-eEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc------------------
Q 015217           32 VVQLTPNNFKSKVLNANG-VVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~-~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~------------------   90 (411)
                      +...+++.+. ...-.++ +++|.|| ++||++|+...+.+.++.+.+++ ++.++.|+++.                  
T Consensus        20 l~~~~G~~~~-l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~   98 (160)
T 1xvw_A           20 LRDQNQQLVT-LRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLL   98 (160)
T ss_dssp             EECTTSCEEE-GGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEE
T ss_pred             eEcCCCCEEe-HHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEE
Confidence            3344444444 2222455 9999998 99999999999999999999875 58888888763                  


Q ss_pred             -----cHhHHHhcCCC----ccc--EEEEEe-CCCCCcccCCCCCcchhHHHHH
Q 015217           91 -----HQSLAQEYGIR----GFP--TIKVFV-PGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        91 -----~~~~~~~~~i~----~~P--~~~~~~-~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                           +..+++.|++.    ++|  +++++. +|+...++.|..+.....+.+.
T Consensus        99 ~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~  152 (160)
T 1xvw_A           99 SDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT  152 (160)
T ss_dssp             ECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHH
T ss_pred             ecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence                 56789999999    999  666764 5666667777765543333333

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.87  E-value=6.6e-09  Score=83.02  Aligned_cols=83  Identities=16%  Similarity=0.278  Sum_probs=67.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcC-CeEEEEEeCCCchh------------------------HHhhCc
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKK---AANNLKG-KVKLGHVDCDSEKS------------------------LMSKFN  229 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~---~a~~~~~-~~~f~~v~~~~~~~------------------------l~~~~~  229 (411)
                      .++++|.||++||++|+...+.+.+   +.+.+.+ .+.+..|+.+....                        +++.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            5799999999999999999999999   9999965 58898898876533                        477899


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      +..+|+++++..++.  +.+.+ .+.+++.+|+.
T Consensus       111 v~~~P~~~lid~~G~--i~~~~-~~~~~l~~~l~  141 (142)
T 3eur_A          111 LRAIPTLYLLDKNKT--VLLKD-ATLQKVEQYLA  141 (142)
T ss_dssp             CTTCSEEEEECTTCB--EEEEE-ECHHHHHHHHH
T ss_pred             CCcCCeEEEECCCCc--EEecC-CCHHHHHHHHh
Confidence            999999999976663  34433 35788888764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.87  E-value=4.4e-09  Score=75.94  Aligned_cols=75  Identities=20%  Similarity=0.208  Sum_probs=59.1

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcC--CCcccEEEEEeCCCCCcccCCCCCc
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYG--IRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~--i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      -++.|+++||++|+.+.+.+++++..+++ +.+..+|++.++    ++.+++|  +.++|+++  .+|+.+.   |   .
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~--~~g~~i~---~---~   72 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQHIG---G---Y   72 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTEEEE---S---S
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeEE--ECCEEEE---C---H
Confidence            37889999999999999999999987664 899999998654    7999999  99999973  3665432   2   3


Q ss_pred             chhHHHHHHH
Q 015217          125 KPIAEFALQQ  134 (411)
Q Consensus       125 ~~l~~~~~~~  134 (411)
                      +.+.+++.+.
T Consensus        73 ~~l~~~~~~~   82 (85)
T 1ego_A           73 TDFAAWVKEN   82 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5677776654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.86  E-value=1.2e-08  Score=83.82  Aligned_cols=66  Identities=24%  Similarity=0.485  Sum_probs=59.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCc------------------------hhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSE------------------------KSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~------------------------~~l~~~~~v  230 (411)
                      ..++++|.||++||++|+...+.+.++++.+.+  .+.+..|+++..                        ..+++.|++
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            467999999999999999999999999999986  688888888766                        678999999


Q ss_pred             ccccEEEEEcCC
Q 015217          231 QGFPTILVFGAD  242 (411)
Q Consensus       231 ~~~P~i~~~~~~  242 (411)
                      ..+|+++++..+
T Consensus       127 ~~~Pt~~lid~~  138 (165)
T 3s9f_A          127 ESIPTLIGLNAD  138 (165)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            999999999865

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.86  E-value=1.1e-08  Score=86.56  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=74.4

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC-----------------------------CchhHHhhC
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD-----------------------------SEKSLMSKF  228 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~-----------------------------~~~~l~~~~  228 (411)
                      .+++|.||++||++|+...+.+.++.+.+.++ +.+..|+++                             .+..+++.|
T Consensus        47 ~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  126 (196)
T 2ywi_A           47 AATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAY  126 (196)
T ss_dssp             SEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHH
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHh
Confidence            36999999999999999999999999999874 899999873                             345789999


Q ss_pred             ccccccEEEEEcCCCCCccc---------ccCCCCHHHHHHHHHHHhhh
Q 015217          229 NVQGFPTILVFGADKDSPIP---------YEGARTAGAIESFALEQLET  268 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~---------y~g~~~~~~i~~fi~~~~~~  268 (411)
                      ++..+|+++++..++.....         +.|..+.++|.+.|.+.+..
T Consensus       127 ~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          127 DAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEG  175 (196)
T ss_dssp             TCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcC
Confidence            99999999999765543333         45777889999999887754

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.85  E-value=2e-09  Score=89.97  Aligned_cols=102  Identities=17%  Similarity=0.078  Sum_probs=72.5

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccc-------c----HhHHHh-c
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE-------H----QSLAQE-Y   98 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~-------~----~~~~~~-~   98 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.++.+.++++ +.++.|+++.       .    .+++++ +
T Consensus        34 l~~~~G~~~~-l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~  112 (181)
T 2p31_A           34 AVNIRGKLVS-LEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTY  112 (181)
T ss_dssp             EEBTTSCEEE-GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred             eecCCCCEec-HHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhc
Confidence            3344444444 22236889999999999999999999999999999864 8999998763       1    233443 2


Q ss_pred             -----------------------CCCccc-------EEEEE-eCCCCCcccCCCCCcchhHHHHHHH
Q 015217           99 -----------------------GIRGFP-------TIKVF-VPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus        99 -----------------------~i~~~P-------~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                                             ++.++|       +.+++ ++|+.+.++.|..+.+.+.+.+.+.
T Consensus       113 ~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          113 SVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             CCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred             CCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence                                   245678       66666 5576677888888888777776543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.84  E-value=1.3e-08  Score=81.43  Aligned_cols=67  Identities=16%  Similarity=0.318  Sum_probs=59.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCc------------------------hhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSE------------------------KSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~------------------------~~l~~~~~v  230 (411)
                      .+++++|.||++||++|+...+.+.++++.+.+  .+.+..|+++.+                        ..+++.|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            467999999999999999999999999999984  788999988753                        468999999


Q ss_pred             ccccEEEEEc-CCC
Q 015217          231 QGFPTILVFG-ADK  243 (411)
Q Consensus       231 ~~~P~i~~~~-~~~  243 (411)
                      ..+|+++++. .++
T Consensus       107 ~~~P~~~lid~~~G  120 (144)
T 1i5g_A          107 KSIPTLVGVEADSG  120 (144)
T ss_dssp             CSSSEEEEEETTTC
T ss_pred             CCCCEEEEEECCCC
Confidence            9999999997 555

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.84  E-value=1.6e-08  Score=81.19  Aligned_cols=67  Identities=21%  Similarity=0.422  Sum_probs=58.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCc------------------------hhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSE------------------------KSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~------------------------~~l~~~~~v  230 (411)
                      .+++++|.||++||++|+...+.+.++++.+.  ..+.+..|+++.+                        ..++++|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            46799999999999999999999999999998  3688988888753                        468899999


Q ss_pred             ccccEEEEEc-CCC
Q 015217          231 QGFPTILVFG-ADK  243 (411)
Q Consensus       231 ~~~P~i~~~~-~~~  243 (411)
                      ..+|+++++. .++
T Consensus       107 ~~~Pt~~lid~~~G  120 (146)
T 1o8x_A          107 ESIPTLIGVDADSG  120 (146)
T ss_dssp             CSSSEEEEEETTTC
T ss_pred             CCCCEEEEEECCCC
Confidence            9999999997 555

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.83  E-value=1.7e-08  Score=84.80  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------------------------CchhHHhh
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------------------------SEKSLMSK  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------------------------~~~~l~~~  227 (411)
                      ..++++|.||++||++|+...+.+.++.+.+.+++.+..|+++                             .+..+++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            3579999999999999999999999999999887888888873                             34568899


Q ss_pred             CccccccEEEEEcCCCCCcccccCC----------CCHHHHHHHHHHHhhh
Q 015217          228 FNVQGFPTILVFGADKDSPIPYEGA----------RTAGAIESFALEQLET  268 (411)
Q Consensus       228 ~~v~~~P~i~~~~~~~~~~~~y~g~----------~~~~~i~~fi~~~~~~  268 (411)
                      |++..+|+++++..++.  +.+.|.          .+.++|.+.|.+.+..
T Consensus       112 ~~v~~~P~~~lid~~G~--i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~  160 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRL--LRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG  160 (188)
T ss_dssp             TTCCEESEEEEECTTCB--EEEEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             cCCCCCCeEEEECCCCc--EEEEEecCCccccccccCHHHHHHHHHHHHcC
Confidence            99999999999966553  333343          3678899998887653

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.82  E-value=1.8e-08  Score=92.71  Aligned_cols=93  Identities=13%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHhhC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKF  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~l~~~~  228 (411)
                      ..++++|.||++||++|+...+.+.++++.+.+ .+.+..|+++.                           +..+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            367999999999999999999999999999987 58999888642                           35688999


Q ss_pred             ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217          229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN  269 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  269 (411)
                      ++..+|+++++..++.....+.|..+.+.+.++|.+.+...
T Consensus       161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~  201 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDA  201 (352)
T ss_dssp             TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            99999999999766655667788889999999998877543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=3.1e-08  Score=79.83  Aligned_cols=87  Identities=13%  Similarity=0.274  Sum_probs=71.1

Q ss_pred             CCCeEEEEEeCCCChh--hhhhhHHHHHHHHHh-cCC-eEEEEEeCCCch-------------------------hHHhh
Q 015217          177 SKDLWIVEFFAPWCGH--CKKLAPEWKKAANNL-KGK-VKLGHVDCDSEK-------------------------SLMSK  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~--c~~~~~~~~~~a~~~-~~~-~~f~~v~~~~~~-------------------------~l~~~  227 (411)
                      .+++++|.||++||++  |+...+.+.++.+.| .++ +.+..|+.+...                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3579999999999999  999999999999999 664 999999887654                         78899


Q ss_pred             CccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          228 FNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       228 ~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |++..+|+++++..++.....+   .+.+.+.+.+.+.+
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKN---LRGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEES---CCHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEcc---CCHHHHHHHHHHHH
Confidence            9999999999997666323333   26778888877654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.81  E-value=7.5e-09  Score=87.61  Aligned_cols=89  Identities=11%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~   99 (411)
                      ++++++|.|| ++||++|+...|.+.++.+.+++ ++.++.|+++.                         +..+++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            5789999999 99999999999999999999876 58888888763                         346888999


Q ss_pred             CC-----cccEEEEEe-CCCCCcccCCCC----CcchhHHHHHHHH
Q 015217          100 IR-----GFPTIKVFV-PGKPPVDYQGAR----DVKPIAEFALQQI  135 (411)
Q Consensus       100 i~-----~~P~~~~~~-~g~~~~~~~g~~----~~~~l~~~~~~~~  135 (411)
                      +.     ++|+++++. +|+...++.|..    +.+.+.+.+.+..
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99     999999995 566556666654    4566666666543

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.81  E-value=1e-08  Score=85.23  Aligned_cols=88  Identities=16%  Similarity=0.256  Sum_probs=72.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC-----------------------CCchhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-----------------------DSEKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-----------------------~~~~~l~~~~~v~~~  233 (411)
                      ..++++|.||++||++|+...+.+.++++.   .+.+..|++                       +.+..+++.|++..+
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            367899999999999999999999999887   477777764                       334568888999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      |+++++..++.....+.|..+.+.+.+++.+.+.
T Consensus       134 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          134 PETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             CEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            9999997766656677898899998888877654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.80  E-value=1.1e-08  Score=85.72  Aligned_cols=102  Identities=12%  Similarity=-0.027  Sum_probs=73.0

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-----------cHhHHHhcC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-----------HQSLAQEYG   99 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-----------~~~~~~~~~   99 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++.           -.+++++++
T Consensus        34 l~~~~G~~v~-l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~  112 (185)
T 2gs3_A           34 AKDIDGHMVN-LDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYN  112 (185)
T ss_dssp             EEBTTSCEEE-GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTT
T ss_pred             eEcCCCCEee-HHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcC
Confidence            3344444444 2223678999999999999999999999999999986 48999998752           123444433


Q ss_pred             C------------------------------------CcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHH
Q 015217          100 I------------------------------------RGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       100 i------------------------------------~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +                                    +..|+.+++. +|+.+.++.|..+.+.+.+.+.+.
T Consensus       113 ~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          113 VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence            2                                    2247877774 566677888988888888777654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.79  E-value=2.1e-08  Score=80.19  Aligned_cols=67  Identities=18%  Similarity=0.392  Sum_probs=58.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCc------------------------hhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSE------------------------KSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~------------------------~~l~~~~~v  230 (411)
                      .+++++|.||++||++|+...+.+.++++.+.  ..+.+..|+++.+                        ..++++|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            46789999999999999999999999999998  4688888888763                        368899999


Q ss_pred             ccccEEEEEc-CCC
Q 015217          231 QGFPTILVFG-ADK  243 (411)
Q Consensus       231 ~~~P~i~~~~-~~~  243 (411)
                      ..+|+++++. .++
T Consensus       107 ~~~Pt~~lid~~~G  120 (144)
T 1o73_A          107 ESIPTLITINADTG  120 (144)
T ss_dssp             CSSSEEEEEETTTC
T ss_pred             CCCCEEEEEECCCC
Confidence            9999999998 555

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.79  E-value=5e-09  Score=88.91  Aligned_cols=88  Identities=9%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| ++||++|+...|.+.++.+.+++ ++.++.|+++.                            +..+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            5789999999 99999999999999999998875 58888888763                            347889


Q ss_pred             hcCCC-----cccEEEEEe-CCCCCcccCCCC----CcchhHHHHHHH
Q 015217           97 EYGIR-----GFPTIKVFV-PGKPPVDYQGAR----DVKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i~-----~~P~~~~~~-~g~~~~~~~g~~----~~~~l~~~~~~~  134 (411)
                      .|++.     ++|+++++. +|+...++.|..    +.+.+.+.+.+.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            99999     999999996 565556666655    445566555543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.78  E-value=3.7e-08  Score=82.54  Aligned_cols=91  Identities=16%  Similarity=0.353  Sum_probs=74.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEeCCCc-----hhHHhhCccc-------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-GKVKLGHVDCDSE-----KSLMSKFNVQ-------------------  231 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~-~~~~f~~v~~~~~-----~~l~~~~~v~-------------------  231 (411)
                      ..++++|.||++||++|+...+.+.++.+.+. ..+.+..|+++..     ..+++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            45799999999999999999999999999998 4689999988765     4566777764                   


Q ss_pred             ----cccEEEEEcCCCCCcccccCCCC--HHHHHHHHHHHhh
Q 015217          232 ----GFPTILVFGADKDSPIPYEGART--AGAIESFALEQLE  267 (411)
Q Consensus       232 ----~~P~i~~~~~~~~~~~~y~g~~~--~~~i~~fi~~~~~  267 (411)
                          .+|+++++..++.....+.|..+  .+++.++|.+.+.
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence                78999999766655667778654  6889999887764

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.78  E-value=1.6e-08  Score=86.43  Aligned_cols=89  Identities=13%  Similarity=0.012  Sum_probs=68.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc--------c---HhHHH------hcC---------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE--------H---QSLAQ------EYG---------   99 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~--------~---~~~~~------~~~---------   99 (411)
                      +++++||.||++||++|+...|.+.++.+.+++ .+.++.|+++.        .   .++++      +++         
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~  125 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC  125 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence            688999999999999999999999999999986 48999998851        1   12333      333         


Q ss_pred             --------------------------------------------CCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHH
Q 015217          100 --------------------------------------------IRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       100 --------------------------------------------i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                                                                  +.+.|+.+++. +|+...++.|..+.+.+.+.+.+.
T Consensus       126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l  205 (208)
T 2f8a_A          126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL  205 (208)
T ss_dssp             CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred             ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence                                                        23347767774 566677888999999988888766


Q ss_pred             H
Q 015217          135 I  135 (411)
Q Consensus       135 ~  135 (411)
                      +
T Consensus       206 l  206 (208)
T 2f8a_A          206 L  206 (208)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.78  E-value=6e-09  Score=87.24  Aligned_cols=100  Identities=15%  Similarity=0.049  Sum_probs=70.5

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c----HhHHHhc-
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H----QSLAQEY-   98 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~----~~~~~~~-   98 (411)
                      +..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+++.       .    .++++++ 
T Consensus        32 l~~~~G~~~~-l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~  110 (183)
T 2obi_A           32 AKDIDGHMVN-LDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYN  110 (183)
T ss_dssp             EEBTTSCEEE-GGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTT
T ss_pred             EEcCCCCEee-HHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcC
Confidence            3344555444 2223689999999999999999999999999999986 48999998752       1    1222222 


Q ss_pred             ------------------------------C-----CCcccEEEEEe-CCCCCcccCCCCCcchhHHHHH
Q 015217           99 ------------------------------G-----IRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        99 ------------------------------~-----i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                                                    +     +.+.|+++++. +|+.+.++.|..+.+.+.+.+.
T Consensus       111 ~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  180 (183)
T 2obi_A          111 VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLP  180 (183)
T ss_dssp             CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSG
T ss_pred             CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHH
Confidence                                          3     33358888884 5666777888888777666554

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.76  E-value=3.5e-08  Score=81.83  Aligned_cols=83  Identities=17%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe---------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD---------------------------------------   87 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd---------------------------------------   87 (411)
                      .++++++.|+.+||++|+.++|.+.++.+.+.+ +.+...+                                       
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            467899999999999999999999999988765 5554443                                       


Q ss_pred             ------------------------------ccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           88 ------------------------------ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        88 ------------------------------~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                                    ...+.++++++||.++|++++  +|+   .+.|..+.+.+.+.+.+.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                          223346788999999999876  553   5678888888888887655

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.75  E-value=2.2e-08  Score=86.08  Aligned_cols=82  Identities=24%  Similarity=0.367  Sum_probs=62.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe---------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD---------------------------------------   87 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd---------------------------------------   87 (411)
                      .++++++.||++||++|++++|.+.++.+.   ++.+..+.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            467899999999999999999999998763   23333221                                       


Q ss_pred             -c----cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           88 -A----NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        88 -~----~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                       |    +++.++++++||+++|++ ++.+|.   .+.|..+.+.|.+++.+..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence             2    244578999999999998 555663   5678888888988887654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.73  E-value=6.9e-09  Score=92.18  Aligned_cols=71  Identities=20%  Similarity=0.433  Sum_probs=58.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC------CchhHHhhCccccccEEEEEcCCCCCcccccCCCCH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA  255 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~  255 (411)
                      +|.||++||++|+.+.|.|+++++++.      .++|+      .+++++++|+|+++||+++  +|.    .|.|..+.
T Consensus       201 vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~----~~~G~~~~  268 (291)
T 3kp9_A          201 GTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR----TYTGVRSL  268 (291)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE----EEESCCCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE----EecCCCCH
Confidence            689999999999999999999997663      45554      2678999999999999665  332    38999999


Q ss_pred             HHHHHHHHH
Q 015217          256 GAIESFALE  264 (411)
Q Consensus       256 ~~i~~fi~~  264 (411)
                      +++.+|+..
T Consensus       269 ~~L~~~l~~  277 (291)
T 3kp9_A          269 EALAVASGY  277 (291)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHCC
Confidence            999988643

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.72  E-value=5e-08  Score=84.03  Aligned_cols=88  Identities=14%  Similarity=0.322  Sum_probs=72.4

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC-----------------------------CchhHHhhCc
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD-----------------------------SEKSLMSKFN  229 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~-----------------------------~~~~l~~~~~  229 (411)
                      +++|.||++||++|+...+.+.++++.|.++ +.|..|+++                             .+..+++.|+
T Consensus        61 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~  140 (218)
T 3u5r_E           61 ALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYG  140 (218)
T ss_dssp             EEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHT
T ss_pred             eEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcC
Confidence            6999999999999999999999999999875 999999883                             3567899999


Q ss_pred             cccccEEEEEcCCCCCcccccC-----------CCCHHHHHHHHHHHhhhc
Q 015217          230 VQGFPTILVFGADKDSPIPYEG-----------ARTAGAIESFALEQLETN  269 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g-----------~~~~~~i~~fi~~~~~~~  269 (411)
                      +..+|+++++..++  .+.|.|           ..+.++|.+.|.+.+...
T Consensus       141 v~~~P~~~liD~~G--~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          141 AACTPDFFLYDRER--RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             CCEESEEEEECTTC--BEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEECCCC--cEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence            99999999996665  344554           345688888888876543

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.70  E-value=7.4e-08  Score=78.77  Aligned_cols=91  Identities=12%  Similarity=0.225  Sum_probs=75.1

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcC-----CeEEEEEeCCCc----------------------------h
Q 015217          177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKG-----KVKLGHVDCDSE----------------------------K  222 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~~-----~~~f~~v~~~~~----------------------------~  222 (411)
                      ..++++|.||++||++ |....+.+.++.+.+..     .+.+..|+++..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3579999999999998 99999999999999964     688888887642                            1


Q ss_pred             hHHhhCcccccc---------------EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          223 SLMSKFNVQGFP---------------TILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       223 ~l~~~~~v~~~P---------------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      .+++.||+...|               +++++..++.....+.|..+.++|.+.|.+.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            378889999888               788887666656777888899999998887654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.70  E-value=7.5e-08  Score=81.71  Aligned_cols=105  Identities=11%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC----CCeEEEEEeccc---------------
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLK----GVATVAALDANE---------------   90 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~----~~i~~~~vd~~~---------------   90 (411)
                      .+...+++.+. ...-++++++|.||++||++ |....|.+.++.+.+.    +++.++.|+++.               
T Consensus        25 ~l~d~~G~~v~-l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~  103 (200)
T 2b7k_A           25 HLEDMYGNEFT-EKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDF  103 (200)
T ss_dssp             EEEETTSCEEE-GGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTS
T ss_pred             EEEcCCCCEEe-HHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHc
Confidence            34455555554 22236889999999999997 9999999999877664    367888887762               


Q ss_pred             -------------cHhHHHhcCCC-ccc---------------EEEEE-eCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           91 -------------HQSLAQEYGIR-GFP---------------TIKVF-VPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        91 -------------~~~~~~~~~i~-~~P---------------~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                                   ...+++.||+. +.|               +++++ ++|+....+.|..+.+.+.+.+.+.++
T Consensus       104 ~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          104 HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVK  179 (200)
T ss_dssp             CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHH
T ss_pred             CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                         13577888887 344               55666 456666677888888888888877764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.69  E-value=1.2e-07  Score=78.00  Aligned_cols=91  Identities=15%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             CCeEEEEEeCCCChh-hhhhhHHHHHHHHHhc-----CCeEEEEEeCCCc----------------------------hh
Q 015217          178 KDLWIVEFFAPWCGH-CKKLAPEWKKAANNLK-----GKVKLGHVDCDSE----------------------------KS  223 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~-----~~~~f~~v~~~~~----------------------------~~  223 (411)
                      .++++|.||++||++ |+...+.+.++.+.+.     ..+.+..|+++..                            ..
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            579999999999998 9999999999999995     4688888887631                            15


Q ss_pred             HHhhCcccccc---------------EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217          224 LMSKFNVQGFP---------------TILVFGADKDSPIPYEGARTAGAIESFALEQLET  268 (411)
Q Consensus       224 l~~~~~v~~~P---------------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  268 (411)
                      +++.|++...|               +++++..++.....|.|..+.+.+.+.+.+.+..
T Consensus       106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  165 (171)
T 2rli_A          106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA  165 (171)
T ss_dssp             HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            78889998877               8888876666566788888999999998887653

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.68  E-value=9.3e-08  Score=78.56  Aligned_cols=101  Identities=18%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDANE--------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--------------------   90 (411)
                      +...+++.+. ...-++++++|.||++| |++|+...|.+.++.+.+ .++.++.|+.+.                    
T Consensus        29 l~~~~G~~~~-l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~  106 (167)
T 2jsy_A           29 VLTNSLEEKS-LADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLS  106 (167)
T ss_dssp             EEBTTCCEEE-HHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEE
T ss_pred             EECCCCCEee-HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEee
Confidence            3444555554 22225789999999999 999999999999999998 668888887762                    


Q ss_pred             ---cHhHHHhcCCCc------ccEEEEEe-CCCCCcccCCC-----CCcchhHHHHHHH
Q 015217           91 ---HQSLAQEYGIRG------FPTIKVFV-PGKPPVDYQGA-----RDVKPIAEFALQQ  134 (411)
Q Consensus        91 ---~~~~~~~~~i~~------~P~~~~~~-~g~~~~~~~g~-----~~~~~l~~~~~~~  134 (411)
                         +.++++.|++..      .|+.+++. +|+...++.|.     .+.+.+.+.+.+.
T Consensus       107 d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          107 DHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             GGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             CCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence               346788899887      49888886 45555555442     2335666666544

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.68  E-value=1.1e-07  Score=75.87  Aligned_cols=83  Identities=11%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCch--------------------------hHHhhCc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEK--------------------------SLMSKFN  229 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~--------------------------~l~~~~~  229 (411)
                      ..++++|.||++||++|+...+.+.++.+.|.+ .+.+..|+.+.+.                          .+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            357999999999999999999999999999986 4888888877432                          4778899


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +..+|+.+++..++.  +.+.+ ...+++.+.+
T Consensus       111 v~~~P~~~lid~~G~--i~~~~-~~~~~l~~~l  140 (143)
T 4fo5_A          111 LRKGFKNFLINDEGV--IIAAN-VTPEKLTEIL  140 (143)
T ss_dssp             GGGCCCEEEECTTSB--EEEES-CCHHHHHHHH
T ss_pred             CCCCCcEEEECCCCE--EEEcc-CCHHHHHHHH
Confidence            999999999976663  33332 3456666655

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.67  E-value=5.6e-08  Score=82.02  Aligned_cols=117  Identities=21%  Similarity=0.340  Sum_probs=75.6

Q ss_pred             cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccch
Q 015217           91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNF  170 (411)
Q Consensus        91 ~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  170 (411)
                      ....++.+||.++|++++  +|+..... +..+.+++..|+.+.+.  +.+.+..+..+.....         .....++
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~-~~~~~~~~~~f~~~~~~--l~~~L~s~~~p~~~~~---------~~~g~~y  104 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQLNP-QGMDTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQ---------YEDGKQY  104 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECG-GGSCCSSHHHHHHHHHH--HHHHHTC------------------CCBTTTE
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEecCc-cccccccHHHHHHHHHH--HHHHHHhCcccccccc---------cCCCCCc
Confidence            445788999999999866  55532221 33456678787777765  4555544332221111         1122223


Q ss_pred             HHHHh-cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCc
Q 015217          171 DELVL-KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSE  221 (411)
Q Consensus       171 ~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~  221 (411)
                      ..... ...++.+|.||+.||++|+.+.|.+   .++++.+.+++.|..++.+.+
T Consensus       105 ~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          105 TTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             EECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             eEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            32111 2356899999999999999999999   999999988899999988653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.66  E-value=2.5e-08  Score=74.30  Aligned_cols=79  Identities=10%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--CchhHHhhCccccccEEEEEcCCCCCcccccCCCCH
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA  255 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~  255 (411)
                      ..+.+++|+++||++|+.+.+.+.+++.    .+.|..+|.+  .+++++++|| ..+|+++  .++.  .. ..+..+.
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~--~~-~~~g~~~   84 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQ--FL-MMHRVNT   84 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSS--EE-EESSCCH
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCE--EE-EecCCCH
Confidence            4567899999999999999999887653    3899999998  7789999999 9999764  3433  22 3566888


Q ss_pred             HHHHHHHHHHh
Q 015217          256 GAIESFALEQL  266 (411)
Q Consensus       256 ~~i~~fi~~~~  266 (411)
                      +.|.+++.+.+
T Consensus        85 ~~l~~~l~~~~   95 (100)
T 1wjk_A           85 SKLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHHSSS
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.65  E-value=7.2e-08  Score=81.99  Aligned_cols=88  Identities=10%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| ++||++|....+.+.++.+.+++ .+.++.|+++.                            ..++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            5789999999 99999999999999999999875 58888888763                            346888


Q ss_pred             hcCCC------cccEEEEEeC-CCCCcccCCCCC----cchhHHHHHHH
Q 015217           97 EYGIR------GFPTIKVFVP-GKPPVDYQGARD----VKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~~~----~~~l~~~~~~~  134 (411)
                      .|++.      ++|+++++.. |+....+.|...    .+++.+.+.+.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence            99999      9999988854 554445445443    45666666544

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.65  E-value=1.1e-08  Score=72.94  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCccccccEEEE
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFNVQGFPTILV  238 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~v~~~P~i~~  238 (411)
                      .+++|+++||++|+.+.+.+.++++.+...+.+..++.+ ....++++||+.++|++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE
Confidence            367899999999999999999988776545666666554 4678899999999999987

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.65  E-value=6.5e-08  Score=82.74  Aligned_cols=80  Identities=23%  Similarity=0.337  Sum_probs=60.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE--e-------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL--D-------------------------------------   87 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v--d-------------------------------------   87 (411)
                      .++++++.|+.+||++|+++++.+.++.+.  + +.+..+  .                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            467899999999999999999999997652  3 333322  1                                     


Q ss_pred             -c----cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217           88 -A----NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        88 -~----~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                       |    +++.++++++||+++|++++ .+|+   .+.|..+.+.|.+++.+
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHh
Confidence             1    13457889999999999876 6665   56788888888887754

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.61  E-value=1.3e-07  Score=79.75  Aligned_cols=87  Identities=16%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| ++||++|....+.+.++.+.+++ .+.++.|+++.                            ..++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            5789999999 99999999999999999998863 58888887762                            246888


Q ss_pred             hcCCC-----cccEEEEEe-CCCCCcccCCCC----CcchhHHHHHH
Q 015217           97 EYGIR-----GFPTIKVFV-PGKPPVDYQGAR----DVKPIAEFALQ  133 (411)
Q Consensus        97 ~~~i~-----~~P~~~~~~-~g~~~~~~~g~~----~~~~l~~~~~~  133 (411)
                      .||+.     .+|++++++ +|+....+.|..    +.+.+.+.+.+
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~  156 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  156 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence            99999     899999995 455444555543    34455555544

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.59  E-value=1.5e-07  Score=79.28  Aligned_cols=90  Identities=26%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-------------------------------------   89 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-------------------------------------   89 (411)
                      .++++++.|+.+||++|+.++|.+.++.+.+.+++.|..+...                                     
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            5789999999999999999999999999998877777655431                                     


Q ss_pred             ------------------------------------ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217           90 ------------------------------------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        90 ------------------------------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                                                          .+...++++||.++|++++  +|+......|..+.+.+.+.+..
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                                0114567789999999876  67655555577888888888877


Q ss_pred             HHHHH
Q 015217          134 QIKAL  138 (411)
Q Consensus       134 ~~~~~  138 (411)
                      .+...
T Consensus       182 l~~k~  186 (192)
T 3h93_A          182 LIEKE  186 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.58  E-value=2e-07  Score=76.03  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             CCe-EEEEEe-CCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC---------------------CchhHHhhCcccc-
Q 015217          178 KDL-WIVEFF-APWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD---------------------SEKSLMSKFNVQG-  232 (411)
Q Consensus       178 ~~~-~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~---------------------~~~~l~~~~~v~~-  232 (411)
                      .+. ++|.|| ++||++|+...+.+.++++.+.++ +.+..|+.+                     .+..+++.|++.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            444 899999 999999999999999999999875 889888877                     4567889999998 


Q ss_pred             ---ccEEEEEcCCCCCcccccCCC
Q 015217          233 ---FPTILVFGADKDSPIPYEGAR  253 (411)
Q Consensus       233 ---~P~i~~~~~~~~~~~~y~g~~  253 (411)
                         +|+.+++..++.....+.|..
T Consensus       108 ~~~~P~~~lid~~G~i~~~~~g~~  131 (161)
T 3drn_A          108 ILPARITFVIDKKGIIRHIYNSQM  131 (161)
T ss_dssp             SSCCCEEEEECTTSBEEEEEECSS
T ss_pred             CcccceEEEECCCCEEEEEEecCC
Confidence               999999977665556677743

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.58  E-value=1.8e-07  Score=80.76  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.||+ +||++|....|.+.++.+.+++ .+.++.|+++.                            +..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            68899999996 9999999999999999999976 48888888863                            225788


Q ss_pred             hcCCC------cccEEEEEe-CCCCCcccCCCCCcc
Q 015217           97 EYGIR------GFPTIKVFV-PGKPPVDYQGARDVK  125 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~-~g~~~~~~~g~~~~~  125 (411)
                      .|++.      .+|++++++ +|+....+.|....+
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~  183 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVG  183 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBC
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCC
Confidence            89998      899999986 455555665655444

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.57  E-value=1.6e-07  Score=80.41  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| ++||++|....+.+.++.+.+++ ++.++.|+++.                            ..++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            6789999999 99999999999999999998863 58888887653                            346888


Q ss_pred             hcCCC-----cccEEEEEeC-CCCCcccCCCC----CcchhHHHHHHH
Q 015217           97 EYGIR-----GFPTIKVFVP-GKPPVDYQGAR----DVKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i~-----~~P~~~~~~~-g~~~~~~~g~~----~~~~l~~~~~~~  134 (411)
                      .||+.     .+|+++++.. |+....+.|..    +.+++.+.+...
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            99999     8999888864 55444444433    355666666544

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.57  E-value=8.6e-08  Score=82.60  Aligned_cols=88  Identities=11%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| ++||++|+...+.+.++.+.+++ .+.++.|+++.                            ..++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            5699999999 99999999999999999999864 58888887753                            246889


Q ss_pred             hcCCC------cccEEEEEe-CCCCCcccCCCC----CcchhHHHHHHH
Q 015217           97 EYGIR------GFPTIKVFV-PGKPPVDYQGAR----DVKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~-~g~~~~~~~g~~----~~~~l~~~~~~~  134 (411)
                      .|++.      .+|++++++ +|+....+.|..    +.+++.+.+...
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            99999      999999995 455444445543    335565555543

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.55  E-value=2.3e-07  Score=76.90  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEeccc----------------------cHhHHHhcCCCcc
Q 015217           47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDANE----------------------HQSLAQEYGIRGF  103 (411)
Q Consensus        47 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~----------------------~~~~~~~~~i~~~  103 (411)
                      ++++++|.||++| |++|+...|.+.++.+.  .++.++.|+.+.                      +..+++.|++...
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  120 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  120 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence            5789999999999 99999999999999988  557888887762                      2468889999877


Q ss_pred             ---------cEEEEEe-CCCCCcccCC--CCCcchhHHHHHHH
Q 015217          104 ---------PTIKVFV-PGKPPVDYQG--ARDVKPIAEFALQQ  134 (411)
Q Consensus       104 ---------P~~~~~~-~g~~~~~~~g--~~~~~~l~~~~~~~  134 (411)
                               |+.+++. +|+....+.|  ......+.+++...
T Consensus       121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l  163 (175)
T 1xvq_A          121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAAL  163 (175)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHH
T ss_pred             ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHH
Confidence                     8888875 4655555543  33444566665543

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.55  E-value=4.4e-07  Score=76.58  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=39.1

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN   89 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~   89 (411)
                      ..++++++.|+.+||++|+.+.|.+.++.+.+.+++.+..++..
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            35789999999999999999999999999998887888777764

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.54  E-value=9.1e-08  Score=78.89  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=69.9

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcC----CeEEEEEeCCCc----------------------------hh
Q 015217          177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKG----KVKLGHVDCDSE----------------------------KS  223 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~~----~~~f~~v~~~~~----------------------------~~  223 (411)
                      ..++++|.||++||++ |+...+.+.++.+.+..    ++.+..|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3579999999999997 99999999999999984    699999987642                            24


Q ss_pred             HHhhCc---------------cccccEEEEEcCCCCCcccccCCC--CHHHHHHHHHHH
Q 015217          224 LMSKFN---------------VQGFPTILVFGADKDSPIPYEGAR--TAGAIESFALEQ  265 (411)
Q Consensus       224 l~~~~~---------------v~~~P~i~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~  265 (411)
                      +++.|+               +..+|+++++. ++.....+.|..  +.+.|.+.|.+.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            555555               45789999999 776566677776  788888887653

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.54  E-value=3.4e-07  Score=76.94  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=71.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC--------ch---hHH-h-----------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS--------EK---SLM-S-----------------  226 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~--------~~---~l~-~-----------------  226 (411)
                      ..++++|.||++||++|+...+.+.++.+.+.++ +.+..|+++.        ..   ..+ +                 
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4578999999999999999999999999999875 9999998762        11   122 1                 


Q ss_pred             ------------hCcccccc------EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          227 ------------KFNVQGFP------TILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       227 ------------~~~v~~~P------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                                  .+++..+|      +.+++..++.....+.|..+.+.+.+.|.+.+.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                        14777788      888887666656677888889999999887764

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.53  E-value=3.9e-07  Score=74.44  Aligned_cols=75  Identities=9%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------cHhHHHhcCCCc-
Q 015217           47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIRG-  102 (411)
Q Consensus        47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------~~~~~~~~~i~~-  102 (411)
                      ++++++|.||+ +||++|....+.+.++.+.+++ .+.++.|.++.                     ..++++.||+.. 
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            57799999998 9999999999999999998875 47788787762                     236778888877 


Q ss_pred             -----------ccEEEEEeC-CCCCcccCCC
Q 015217          103 -----------FPTIKVFVP-GKPPVDYQGA  121 (411)
Q Consensus       103 -----------~P~~~~~~~-g~~~~~~~g~  121 (411)
                                 .|+.++++. |+....+.+.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~  144 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKV  144 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSC
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCC
Confidence                       899999965 5544455443

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.52  E-value=1e-07  Score=78.75  Aligned_cols=102  Identities=17%  Similarity=0.148  Sum_probs=69.0

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhCC---CeEEEEEeccc---cH-------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCG-HCQALTPIWEKAATVLKG---VATVAALDANE---HQ-------------   92 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~---~~-------------   92 (411)
                      ..++.+.+. ...-++++++|.||++||+ +|....+.+.++.+.+++   ++.++.|+++.   .+             
T Consensus        19 ~~~~G~~~~-l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~   97 (174)
T 1xzo_A           19 QNQDGKNVS-LESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLS   97 (174)
T ss_dssp             ECTTSCEEE-TGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCC
T ss_pred             EcCCCCEEe-hhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            334444443 2223688999999999999 999999999999988864   38899888862   11             


Q ss_pred             ------------hHHHh----------------cCCCcccEEEEEe-CCCCCcccCCCC--CcchhHHHHHHHH
Q 015217           93 ------------SLAQE----------------YGIRGFPTIKVFV-PGKPPVDYQGAR--DVKPIAEFALQQI  135 (411)
Q Consensus        93 ------------~~~~~----------------~~i~~~P~~~~~~-~g~~~~~~~g~~--~~~~l~~~~~~~~  135 (411)
                                  ++.+.                +++.+.|+++++. +|+...++.|..  +.+.+.+.+.+.+
T Consensus        98 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll  171 (174)
T 1xzo_A           98 FDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS  171 (174)
T ss_dssp             GGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred             CcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence                        11222                2356688877775 465566677765  3566777766543

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.51  E-value=2.6e-07  Score=76.18  Aligned_cols=89  Identities=12%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC-------Cc----hhHH-------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD-------SE----KSLM-------------------  225 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~-------~~----~~l~-------------------  225 (411)
                      ..++++|.||++||++|+ ..+.+.++.+.+.++ +.+..|+++       ..    ...+                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            457999999999999999 999999999999875 888888763       10    1112                   


Q ss_pred             -----------hhCcccccc------EEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          226 -----------SKFNVQGFP------TILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       226 -----------~~~~v~~~P------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                                 +.|++..+|      +.+++..++.....+.|..+.+.+.+.|.+.+
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL  167 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence                       246788889      88888766665677788888889988888765

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=1.3e-08  Score=83.06  Aligned_cols=87  Identities=18%  Similarity=0.251  Sum_probs=62.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHH-HHHHhc--CCeEEEEEeCCCchhHHhhCc------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKK-AANNLK--GKVKLGHVDCDSEKSLMSKFN------------------------  229 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~-~a~~~~--~~~~f~~v~~~~~~~l~~~~~------------------------  229 (411)
                      .+++++|.||++||++|+...+.+.+ +...+.  ..+.++.|+++...+.+++|.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            35689999999999999999999998 888886  358888888776544444333                        


Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      +.++|+++++..++.....+.| .+.+++.+++.+
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~  145 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQ  145 (159)
Confidence            5668999999655544455555 455566655544

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.90  E-value=1.3e-08  Score=81.21  Aligned_cols=67  Identities=19%  Similarity=0.466  Sum_probs=55.9

Q ss_pred             CC-eEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEeCCCc-------------------------hhHHhhC
Q 015217          178 KD-LWIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCDSE-------------------------KSLMSKF  228 (411)
Q Consensus       178 ~~-~~lv~f~~~~c~~c~~~~~~~~~~a~~~~---~~~~f~~v~~~~~-------------------------~~l~~~~  228 (411)
                      ++ +++|.||++||++|+...+.+.++++.++   ..+.+..|+++..                         ..+++.|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            45 89999999999999999999999999983   3577777776644                         3688999


Q ss_pred             ccccccEEEEEcCCCC
Q 015217          229 NVQGFPTILVFGADKD  244 (411)
Q Consensus       229 ~v~~~P~i~~~~~~~~  244 (411)
                      ++..+|+++++..++.
T Consensus       105 ~v~~~P~~~lid~~G~  120 (143)
T 2lus_A          105 GITGIPALVIVKKDGT  120 (143)
Confidence            9999999999975553

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.48  E-value=6e-07  Score=73.64  Aligned_cols=91  Identities=16%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------c-h---hH-HhhC---------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E-K---SL-MSKF---------------  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~-~---~l-~~~~---------------  228 (411)
                      ..++++|.||++||++|+...+.+.++.+.+.++ +.+..|+++.       . .   .. .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4579999999999999999999999999999874 9999998752       1 1   12 1222               


Q ss_pred             --------------c-----cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          229 --------------N-----VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       229 --------------~-----v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                                    |     +..+|+.+++..++.....+.|..+.+.+.+.|.+.+.
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence                          2     33357888887766656677888888888888877653

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.48  E-value=4.7e-07  Score=74.40  Aligned_cols=90  Identities=12%  Similarity=0.226  Sum_probs=70.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC--------ch---hHHh-hC---------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS--------EK---SLMS-KF---------------  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~--------~~---~l~~-~~---------------  228 (411)
                      ..++++|.||++||++|+...+.+.++++.+.++ +.+..|+++.        ..   ..++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4679999999999999999999999999999875 9999998752        11   2233 33               


Q ss_pred             --------------cc--cccc---EEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          229 --------------NV--QGFP---TILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       229 --------------~v--~~~P---~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                                    ++  ..+|   +.+++..++.....+.|..+.+.+.+.|.+.+
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL  167 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHh
Confidence                          33  4568   88888766665667788888888988887765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.47  E-value=3.4e-07  Score=77.24  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHhhCcc
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------------EKSLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------------~~~l~~~~~v  230 (411)
                      .++++|.|| ++||++|+...+.+.++.+.+.+ .+.+..|+.+.                         +..+++.|++
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            578999999 99999999999999999999987 48888888764                         3457888999


Q ss_pred             c-----cccEEEEEcCCCCCcccccCCC----CHHHHHHHHHHHh
Q 015217          231 Q-----GFPTILVFGADKDSPIPYEGAR----TAGAIESFALEQL  266 (411)
Q Consensus       231 ~-----~~P~i~~~~~~~~~~~~y~g~~----~~~~i~~fi~~~~  266 (411)
                      .     .+|+++++..++.....+.|..    +.+++.+.+.+..
T Consensus       125 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          125 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            9     8999999976665455555654    6788888887764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.47  E-value=2.7e-07  Score=80.58  Aligned_cols=86  Identities=16%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec--------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--------------------------------------   88 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--------------------------------------   88 (411)
                      ..+.+++.|+.+||++|+++++.+.++.+.  +++.+..+..                                      
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~  173 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  173 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCc
Confidence            356789999999999999999999987764  5566554332                                      


Q ss_pred             ------------cccHhHHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHHHHH
Q 015217           89 ------------NEHQSLAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        89 ------------~~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                                  +++.++++++||.++|++++... |+ .....|..+.+.+.+++.+..
T Consensus       174 ~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          174 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC--
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHHH
Confidence                        12346788999999999888763 43 346788888888888876543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.46  E-value=3.3e-07  Score=76.79  Aligned_cols=91  Identities=18%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHhhCc
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------------EKSLMSKFN  229 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------------~~~l~~~~~  229 (411)
                      ..++++|.|| ++||++|....+.+.++++.|.+ .+.+..|+.+.                         +..+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            3578999999 99999999999999999999986 48888888764                         346888999


Q ss_pred             cc------cccEEEEEcCCCCCcccccCCC----CHHHHHHHHHHHhh
Q 015217          230 VQ------GFPTILVFGADKDSPIPYEGAR----TAGAIESFALEQLE  267 (411)
Q Consensus       230 v~------~~P~i~~~~~~~~~~~~y~g~~----~~~~i~~fi~~~~~  267 (411)
                      +.      .+|+++++..++.....+.|..    +.+++.+.+.+...
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            98      8999999976665455555643    67888888876654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.46  E-value=5.5e-07  Score=76.96  Aligned_cols=56  Identities=18%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             cEEeC-ccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           32 VVQLT-PNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        32 ~~~l~-~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      +..++ .+.+. ...-+++++||.||++||++|+ ..|.|.++.+.+++ .+.++.|.|+
T Consensus        40 l~d~~~G~~v~-Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           40 AIALNKNEYVS-FKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             EEBSSSSCEEE-GGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             eeeCCCCCEEc-HHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            33444 44444 2333689999999999999998 89999999999975 5888888875

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.46  E-value=4.3e-08  Score=75.22  Aligned_cols=79  Identities=14%  Similarity=0.189  Sum_probs=54.2

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-----hhHHhhCccccccEEEEEcCCCCCcccccCCC
Q 015217          179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE-----KSLMSKFNVQGFPTILVFGADKDSPIPYEGAR  253 (411)
Q Consensus       179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~-----~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~  253 (411)
                      +.+++ ||++||++|+.+.+.+.+++..    +.+..++.+.+     ..++++||+.++|++ + .+|. ....+.|..
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~-~~g~-~v~~~~~~~   91 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTVPNV-F-IGGK-QIGGCDTVV   91 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-E-ETTE-EEECHHHHH
T ss_pred             CCEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE-E-ECCE-EECChHHHH
Confidence            34444 9999999999999999887543    45666665554     468999999999999 3 3332 233344332


Q ss_pred             ---CHHHHHHHHHHH
Q 015217          254 ---TAGAIESFALEQ  265 (411)
Q Consensus       254 ---~~~~i~~fi~~~  265 (411)
                         +...|.+++.+.
T Consensus        92 ~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           92 EKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHhCChHHHHHHHc
Confidence               445677777654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.45  E-value=2e-07  Score=66.95  Aligned_cols=76  Identities=24%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCc--cccccEEEEEcCCCCCcccccCCCC
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFN--VQGFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~--v~~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                      .++.|+++||++|+.+.+.+.+++..+.+ +.+..+|.+.+    .++.+++|  +.++|++++  ++.  .   .|.  
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~--~g~--~---i~~--   71 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ--H---IGG--   71 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE--E---EES--
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeEEE--CCE--E---EEC--
Confidence            37789999999999999999999988764 88888887654    37899999  899999843  332  2   222  


Q ss_pred             HHHHHHHHHHHh
Q 015217          255 AGAIESFALEQL  266 (411)
Q Consensus       255 ~~~i~~fi~~~~  266 (411)
                      .++|.+++.+.+
T Consensus        72 ~~~l~~~~~~~~   83 (85)
T 1ego_A           72 YTDFAAWVKENL   83 (85)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            368888887765

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.44  E-value=2.4e-07  Score=78.39  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHh
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~  226 (411)
                      ..++++|.|| ++||++|+...+.+.++.+.|.+ .+.+..|+.+.                            +..+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            3578999999 99999999999999999999976 48888888764                            346888


Q ss_pred             hCccc-----cccEEEEEcCCCCCcccccCCC----CHHHHHHHHHHHh
Q 015217          227 KFNVQ-----GFPTILVFGADKDSPIPYEGAR----TAGAIESFALEQL  266 (411)
Q Consensus       227 ~~~v~-----~~P~i~~~~~~~~~~~~y~g~~----~~~~i~~fi~~~~  266 (411)
                      .|++.     .+|+++++..++.....+.|..    +.+++.+.+.+..
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99998     8999999976665455555654    5678888876654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.42  E-value=8.7e-07  Score=75.34  Aligned_cols=91  Identities=12%  Similarity=0.001  Sum_probs=67.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-----------cHhHHH------hcCCC-------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-----------HQSLAQ------EYGIR-------  101 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-----------~~~~~~------~~~i~-------  101 (411)
                      +++++||.||++||++| ...|.|.++.+.+++ .+.++.|.|+.           ..++++      ++++.       
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~  115 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG  115 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence            68999999999999999 688999999999975 58888888651           134555      55432       


Q ss_pred             ------------------------------------------cccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217          102 ------------------------------------------GFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKAL  138 (411)
Q Consensus       102 ------------------------------------------~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~  138 (411)
                                                                +.|+.+++. +|+...+|.|..+++.+...+.+.+...
T Consensus       116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll~~~  195 (207)
T 2r37_A          116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ  195 (207)
T ss_dssp             CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence                                                      015666664 4665678888888888888887776443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.41  E-value=4.4e-07  Score=73.79  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---------------------cHhHHHhcCCCccc-
Q 015217           48 NGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDANE---------------------HQSLAQEYGIRGFP-  104 (411)
Q Consensus        48 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---------------------~~~~~~~~~i~~~P-  104 (411)
                      +++++|.|| +.||++|....|.+.++.+.++++-.++.|.++.                     +.++++.||+...| 
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~  114 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL  114 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence            347888887 8999999999999999999887521666666642                     23688899999988 


Q ss_pred             ------EEEEEeCCCCCcccCCCCCc
Q 015217          105 ------TIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus       105 ------~~~~~~~g~~~~~~~g~~~~  124 (411)
                            ++++ ++|+....+.|....
T Consensus       115 ~g~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A          115 SGSIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             SCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             CCccceEEEE-cCCEEEEEEccCCcc
Confidence                  5555 778766666665443

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.40  E-value=6.3e-07  Score=74.62  Aligned_cols=89  Identities=10%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC--------chh---HHhh-----------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS--------EKS---LMSK-----------------  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~--------~~~---l~~~-----------------  227 (411)
                      ..++++|.||++||++|+...+.+.++++++.++ +.+..|+++.        ...   .+++                 
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4579999999999999999999999999999875 9999998753        111   2222                 


Q ss_pred             -------Ccccccc-------EEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          228 -------FNVQGFP-------TILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       228 -------~~v~~~P-------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                             |++..+|       +.+++..++.....+.|..+.++|.+.|.+.
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence                   2244568       7777766665566678888888888877653

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.40  E-value=9.1e-07  Score=71.91  Aligned_cols=85  Identities=8%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             CeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-----------------------chhHHhhCccc--
Q 015217          179 DLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-----------------------EKSLMSKFNVQ--  231 (411)
Q Consensus       179 ~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-----------------------~~~l~~~~~v~--  231 (411)
                      ++++|.|| ++||++|+...+.+.++++.+.+ .+.+..|+++.                       +..+++.|++.  
T Consensus        37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~  116 (160)
T 1xvw_A           37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  116 (160)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence            38999998 99999999999999999999976 58888888764                       56788999998  


Q ss_pred             --ccc--EEEEEcCCCCCcccccCCCC----HHHHHHHHH
Q 015217          232 --GFP--TILVFGADKDSPIPYEGART----AGAIESFAL  263 (411)
Q Consensus       232 --~~P--~i~~~~~~~~~~~~y~g~~~----~~~i~~fi~  263 (411)
                        ++|  +.+++..++.....+.|..+    .+++.+.+.
T Consensus       117 ~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~  156 (160)
T 1xvw_A          117 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALA  156 (160)
T ss_dssp             TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             cCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence              888  88888766655556666543    344544443

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.39  E-value=2.3e-06  Score=65.99  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CCCcEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           29 SSPVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        29 ~~~~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ...+..|++ +++. .++..+++++|-|+++||.+|   .+.+.++++.+ +.+.|+.++   ++++++++++. .|+++
T Consensus        20 ~~~~~~i~s~~e~e-~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~vv   90 (124)
T 2l4c_A           20 AQEPTWLTDVPAAM-EFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTIC   90 (124)
T ss_dssp             SCCCEECCSHHHHH-HHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCEE
T ss_pred             CCcceEcCCHHHHH-HHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeEE
Confidence            344555654 5666 566778999999999999999   67899999999 779998886   47799999998 89999


Q ss_pred             EEeCCCC-CcccCC----CCCcchhHHHHHHH
Q 015217          108 VFVPGKP-PVDYQG----ARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~~~g~~-~~~~~g----~~~~~~l~~~~~~~  134 (411)
                      +|+.... ...|.|    ..+.+.|.+|+...
T Consensus        91 lfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           91 LFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9998643 567876    78999999999754

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.39  E-value=5.2e-07  Score=62.98  Aligned_cols=68  Identities=16%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHH---hcCCCcccEEEEEeCCCCCcccCCCCCcchhH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ---EYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA  128 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~  128 (411)
                      ++.|+++||++|++..+.+++.      .+.+..+|++.++++.+   ++++.++|++++  +|+.   . +..+.+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~-~g~~~~~l~   70 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---W-SGFRPERIK   70 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---E-ESCCHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---E-cCCCHHHHH
Confidence            6789999999999999988764      36677788887766555   899999999863  5542   2 234555555


Q ss_pred             HHH
Q 015217          129 EFA  131 (411)
Q Consensus       129 ~~~  131 (411)
                      +++
T Consensus        71 ~~l   73 (75)
T 1r7h_A           71 QLQ   73 (75)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.39  E-value=1.1e-06  Score=73.49  Aligned_cols=91  Identities=14%  Similarity=0.125  Sum_probs=69.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC--------chhHHh----h----------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS--------EKSLMS----K----------------  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~--------~~~l~~----~----------------  227 (411)
                      ..++++|.||++||++|....+.+.++.+.|.++ +.+..|+++.        ...+.+    +                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4578999999999999999999999999999885 8888887651        122221    1                


Q ss_pred             ----------------Ccccccc---EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          228 ----------------FNVQGFP---TILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       228 ----------------~~v~~~P---~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                                      +++..+|   +.+++..++.....+.|..+.+.|.+.|.+.+.
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                            2334566   888887767656677888899999999887754

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.34  E-value=2.2e-06  Score=73.03  Aligned_cols=43  Identities=12%  Similarity=0.178  Sum_probs=38.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..++++|.||++||++|+...|.+.+++++|.++ +.+..|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4579999999999999999999999999999875 888888875

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.34  E-value=2.9e-06  Score=70.43  Aligned_cols=88  Identities=9%  Similarity=0.028  Sum_probs=62.7

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------   90 (411)
                      +...+.+.+. ...-++++++|.|| +.||+.|....+.+.++.+.+++ .+.++.|.++.                   
T Consensus        36 l~~~~G~~v~-l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~  114 (179)
T 3ixr_A           36 LMLSGSTCKT-LSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVS  114 (179)
T ss_dssp             EEEGGGEEEC-GGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEE
T ss_pred             EECCCCCEEe-HHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEE
Confidence            4445555554 22335778888888 99999999999999999999876 47787777753                   


Q ss_pred             --cHhHHHhcCCCc------------ccEEEEEeC-CCCCcccCC
Q 015217           91 --HQSLAQEYGIRG------------FPTIKVFVP-GKPPVDYQG  120 (411)
Q Consensus        91 --~~~~~~~~~i~~------------~P~~~~~~~-g~~~~~~~g  120 (411)
                        +.++++.|++..            .|+.++++. |+....+.+
T Consensus       115 D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~  159 (179)
T 3ixr_A          115 DSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQ  159 (179)
T ss_dssp             CTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECS
T ss_pred             CCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcC
Confidence              226778888864            588888864 554445544

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.30  E-value=4.9e-07  Score=64.24  Aligned_cols=68  Identities=13%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHH---hcCCCcccEEEEEeCCCCCcccCCCCCcchhH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ---EYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA  128 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~  128 (411)
                      ++.|+++||++|+...+.+++.      .+.+..+|+++++++.+   ++|+.++|+++  .+|+.+    +..+.+.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~~----~g~~~~~l~   70 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLSW----SGFRPDMIN   70 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEEE----ESCCHHHHG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEEE----ecCCHHHHH
Confidence            6789999999999999988763      36677889987765443   58999999983  355421    223444454


Q ss_pred             HHH
Q 015217          129 EFA  131 (411)
Q Consensus       129 ~~~  131 (411)
                      +++
T Consensus        71 ~~l   73 (81)
T 1h75_A           71 RLH   73 (81)
T ss_dssp             GGS
T ss_pred             HHH
Confidence            444

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.29  E-value=9.7e-06  Score=64.67  Aligned_cols=111  Identities=17%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEE-EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC--CCchhHHhhCcccc--
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWI-VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC--DSEKSLMSKFNVQG--  232 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~l-v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~--~~~~~l~~~~~v~~--  232 (411)
                      .-+.|.+++.++..... ....+.. ++|.......-..+.+.+.++|+.|++++.|+.+|.  +......+.||+..  
T Consensus        12 ~~PLV~e~t~en~~~~~-~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           12 QLPLVIEFTEQTAPKIF-GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             ---CEEECCTTTHHHHH-SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             cCCeeEEeccccHHHHh-cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCccc
Confidence            45789999999988864 4444443 345533333346688999999999999999999998  44446888999985  


Q ss_pred             ccEEEEEcC-CCCCccccc-CCCCHHHHHHHHHHHhhhc
Q 015217          233 FPTILVFGA-DKDSPIPYE-GARTAGAIESFALEQLETN  269 (411)
Q Consensus       233 ~P~i~~~~~-~~~~~~~y~-g~~~~~~i~~fi~~~~~~~  269 (411)
                      +|+++++.. +....+.+. +.++.+.|.+|+...+...
T Consensus        91 ~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~Gk  129 (147)
T 3bj5_A           91 CPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK  129 (147)
T ss_dssp             CSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCC
Confidence            899999864 322234443 7889999999999988643

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.29  E-value=5e-06  Score=69.85  Aligned_cols=42  Identities=29%  Similarity=0.534  Sum_probs=36.9

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA   88 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~   88 (411)
                      .+++++|.|+.+||++|+.++|.+.++.+.+.+++.|..++.
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~   64 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV   64 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            468899999999999999999999999998887777766654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.28  E-value=3.4e-06  Score=70.07  Aligned_cols=90  Identities=11%  Similarity=0.099  Sum_probs=65.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------c----hhHHhh-Cccc------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E----KSLMSK-FNVQ------------  231 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~----~~l~~~-~~v~------------  231 (411)
                      ..++++|.||++||++|+...+.+.++.+.|.++ +.+..|+++.       .    ...+++ +++.            
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4579999999999999999999999999999885 8888888653       2    134444 4322            


Q ss_pred             --------------cccE----EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          232 --------------GFPT----ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       232 --------------~~P~----i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                                    ..|+    .+++..++.....|.|..+.+.+.+.|.+.+
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                          1465    6677666655667778777777666665554

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.28  E-value=1.4e-06  Score=72.68  Aligned_cols=87  Identities=11%  Similarity=0.083  Sum_probs=63.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------c-h---hHHhhC----------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E-K---SLMSKF----------------  228 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~-~---~l~~~~----------------  228 (411)
                      ..++++|.||++||++|+...+.+.++.+.+.++ +.+..|+++.       . .   ..++++                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4579999999999999999999999999999874 8999898752       1 1   122222                


Q ss_pred             ---------------c-----cccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          229 ---------------N-----VQGFPTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       229 ---------------~-----v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                                     +     +..+|+++++..++.....+.|..+.++|.+.|.
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  180 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLP  180 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHH
Confidence                           2     2224888888766655666778777777766554

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.26  E-value=2.5e-06  Score=71.22  Aligned_cols=88  Identities=14%  Similarity=0.054  Sum_probs=63.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------c----hhHHhhCccc-------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E----KSLMSKFNVQ-------------  231 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~----~~l~~~~~v~-------------  231 (411)
                      ..++++|.||++||++|+...+.+.++.+++.++ +.+..|+++.       .    ...++++++.             
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            3579999999999999999999999999999874 8999888752       1    2233444332             


Q ss_pred             -----------------------cccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          232 -----------------------GFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       232 -----------------------~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                                             ..|+.+++..++.....+.|..+.++|.+.|.+
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  183 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  183 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHH
Confidence                                   136777776666555666777677666666554

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.26  E-value=1.8e-06  Score=74.22  Aligned_cols=88  Identities=9%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      +++++||.|| ++||++|....|.+.++.+.+++ .+.++.|.++.                            ...+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            6789999999 99999999999999999988863 57777776642                            124677


Q ss_pred             hcCC-----CcccEEEEEeC-CCCCcccCCC----CCcchhHHHHHHH
Q 015217           97 EYGI-----RGFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i-----~~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~~~  134 (411)
                      .||+     ...|+.++++. |+....+.|.    .+.+++.+.+.+.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            7888     36899988864 5444444443    3455666666554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.25  E-value=2e-07  Score=71.20  Aligned_cols=60  Identities=20%  Similarity=0.212  Sum_probs=45.1

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-------hHHHhcCCCcccEEEEEeCCCC
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-------SLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ..++.|+++||++|+++.+.+.+..... ++  +..+|++.++       .+.+.+|+.++|++++  +|+.
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~   85 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTS   85 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            4577899999999999999887644221 22  7778887663       7888999999999743  5654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.24  E-value=3.1e-06  Score=69.61  Aligned_cols=103  Identities=13%  Similarity=0.027  Sum_probs=68.1

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEeccc----------------
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCG-HCQALTPIWEKAATVLK---GVATVAALDANE----------------   90 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~i~~~~vd~~~----------------   90 (411)
                      .+...+++.+. ...-++++++|.||++||+ .|....+.+.++.+.+.   .++.++.|.++.                
T Consensus        12 ~l~d~~G~~v~-l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~   90 (170)
T 3me7_A           12 TLVDSYGNEFQ-LKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGI   90 (170)
T ss_dssp             EEEETTCCEEE-GGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTC
T ss_pred             EEEcCCcCEEc-hHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCC
Confidence            34445555444 2222589999999999997 69999999999999985   357777776541                


Q ss_pred             ---------------cHhHHHhcCC---------CcccEEEEEeC-CCCCcccCCC-CCcchhHHHHHHH
Q 015217           91 ---------------HQSLAQEYGI---------RGFPTIKVFVP-GKPPVDYQGA-RDVKPIAEFALQQ  134 (411)
Q Consensus        91 ---------------~~~~~~~~~i---------~~~P~~~~~~~-g~~~~~~~g~-~~~~~l~~~~~~~  134 (411)
                                     ..+++++||+         .+.|++++++. |+....|.|. .+.+++.+.+.+.
T Consensus        91 ~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~  160 (170)
T 3me7_A           91 DGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA  160 (170)
T ss_dssp             CSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred             CCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence                           1245666553         45577878864 5444455664 4566666666654

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.24  E-value=3.6e-06  Score=70.35  Aligned_cols=88  Identities=11%  Similarity=-0.006  Sum_probs=63.1

Q ss_pred             CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc-------------------------HhHHHhcC
Q 015217           47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANEH-------------------------QSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~-------------------------~~~~~~~~   99 (411)
                      ++++++|.||+ +||+.|....|.+.++.+.+++ .+.++.|.++..                         ..+++.||
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            57899999995 9999999999999999988864 577777766521                         14566677


Q ss_pred             CC------cccEEEEEe-CCCCCcccCCCC----CcchhHHHHHHH
Q 015217          100 IR------GFPTIKVFV-PGKPPVDYQGAR----DVKPIAEFALQQ  134 (411)
Q Consensus       100 i~------~~P~~~~~~-~g~~~~~~~g~~----~~~~l~~~~~~~  134 (411)
                      +.      ..|+.+++. +|+....+.|..    +.+++.+.+.+.
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            76      369988886 455455555543    355566666544

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.23  E-value=6.7e-07  Score=72.56  Aligned_cols=57  Identities=16%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      +...+.+.+. ...-++++++|.|| ++||++|....|.+.++.+.+++ .+.++.|+.+
T Consensus        15 l~~~~G~~~~-l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d   73 (157)
T 4g2e_A           15 LPDTELKKVK-LSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVD   73 (157)
T ss_dssp             EEBTTSCEEE-GGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESS
T ss_pred             eECCCCCEEe-HHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeeccc
Confidence            3344444444 22236789999998 99999999999999988888765 5777777765

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.22  E-value=4.4e-06  Score=69.51  Aligned_cols=86  Identities=21%  Similarity=0.358  Sum_probs=64.1

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--c----------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--E----------------------------------   90 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~----------------------------------   90 (411)
                      .+++++|.|+...|++|+++++.+.++.+.+.+++.+..+...  .                                  
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999998876555443221  0                                  


Q ss_pred             ---------------------------------------cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217           91 ---------------------------------------HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        91 ---------------------------------------~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                                                             +.+.++++||+++|++++  +|+.++...+..+.+.+.+.+
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHH
Confidence                                                   015678899999999776  777555556667777777666


Q ss_pred             HHH
Q 015217          132 LQQ  134 (411)
Q Consensus       132 ~~~  134 (411)
                      ..+
T Consensus       178 ~~L  180 (184)
T 4dvc_A          178 NYL  180 (184)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.22  E-value=2.8e-06  Score=72.06  Aligned_cols=89  Identities=9%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      .++++|.|| ++||+.|....+.+.++++.|.+ .+.+..|+++.                            +..+++.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            578999999 99999999999999999999976 48888888764                            3457888


Q ss_pred             Cccc------cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHHh
Q 015217          228 FNVQ------GFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQL  266 (411)
Q Consensus       228 ~~v~------~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~~  266 (411)
                      |++.      .+|+++++..++.....+.|.    .+.+++.+.+....
T Consensus       116 ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          116 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            9998      899999997666444444443    34577877776543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.19  E-value=2.9e-06  Score=72.75  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC--------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC--------------------------------------  218 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~--------------------------------------  218 (411)
                      ..++.++.|+++||++|+.+.+.+.++++.   .+.+..+..                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            356899999999999999999999988763   344443321                                      


Q ss_pred             ------CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          219 ------DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       219 ------~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                            +.+..+++++||.++|+++ +.++    ..+.|..+.+.|.+++.+..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~v-~~dG----~~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAVV-LSNG----TLVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEE-CTTS----CEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEEE-EcCC----eEecCCCCHHHHHHHHHHhh
Confidence                  1234578899999999985 4433    24678888899999887654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.19  E-value=1.6e-06  Score=65.08  Aligned_cols=59  Identities=19%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-------HhHHHhcCCCcccEEEEEeCCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-------QSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-------~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      .++.|+++||++|+++.+.+.+....+++   +..+|++.+       ..+.+.+|+.++|+++  .+|+.
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~--~~g~~   78 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKEC   78 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE--ECCEE
Confidence            36779999999999999999886654432   455666654       3578889999999973  35653

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.18  E-value=5.5e-06  Score=68.39  Aligned_cols=83  Identities=19%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-------------------------------------  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-------------------------------------  219 (411)
                      +.++.++.|++.|||+|+.+.+.+.++.+.+.. +.+...+..                                     
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            356889999999999999999999999998765 555554421                                     


Q ss_pred             --------------------------------CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          220 --------------------------------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       220 --------------------------------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                                                      .+..+++++||.++|++++   ++   ..+.|..+.+.+.+.|.+.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i---~g---~~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV---ED---ALVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE---TT---EEECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE---CC---EEeeCCCCHHHHHHHHHHHH
Confidence                                            1234667899999999987   22   25678889999999887765

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.18  E-value=4e-06  Score=70.40  Aligned_cols=89  Identities=17%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHh
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~  226 (411)
                      ..++++|.|| ++||++|....+.+.++++.|.+ .+.+..|+.+.                            +..+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            3578999999 99999999999999999999974 58888887763                            235788


Q ss_pred             hCccc-----cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHH
Q 015217          227 KFNVQ-----GFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQ  265 (411)
Q Consensus       227 ~~~v~-----~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  265 (411)
                      .||+.     .+|+++++..++.....+.|.    .+.+++.+.+...
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            89998     899999997666444444453    2466777766554

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.18  E-value=5.2e-06  Score=70.96  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHh
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~  226 (411)
                      ..++++|.|| ++||+.|....+.+.+++++|.+ .+.+..|+.+.                            +..+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            3568999999 99999999999999999999974 58888887654                            345788


Q ss_pred             hCccc-----cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHH
Q 015217          227 KFNVQ-----GFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQ  265 (411)
Q Consensus       227 ~~~v~-----~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  265 (411)
                      .||+.     .+|+++++..++.....+.|.    .+.+++.+.+...
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            89998     899999997666444444443    3467777777654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.17  E-value=6e-06  Score=69.82  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhc----CCeEEEEEeCCC----------------------------chh
Q 015217          177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLK----GKVKLGHVDCDS----------------------------EKS  223 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~----~~~~f~~v~~~~----------------------------~~~  223 (411)
                      ..++++|.||++||++ |....+.+.++.+.+.    ..+.+..|+++.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            3578999999999998 9999999999877775    368888888763                            124


Q ss_pred             HHhhCccc-ccc---------------EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          224 LMSKFNVQ-GFP---------------TILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       224 l~~~~~v~-~~P---------------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +++.||+. ..|               +++++..++.....+.|..+.+.+.+.|.+.+.
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVK  179 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            67788876 333               678877666656667787787888888877664

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.16  E-value=4.7e-06  Score=71.61  Aligned_cols=89  Identities=10%  Similarity=0.149  Sum_probs=69.5

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      .++++|.|| ++||+.|+...+.+.+++++|.. .+.+..|+++.                            +..+++.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            478999999 99999999999999999999975 58888887753                            3468888


Q ss_pred             Cccc------cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHHh
Q 015217          228 FNVQ------GFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQL  266 (411)
Q Consensus       228 ~~v~------~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~~  266 (411)
                      |++.      .+|+++++..++.....+.|.    .+.+++.+.+....
T Consensus       136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            9998      899999997666434434443    45678887776543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.16  E-value=2.8e-06  Score=69.93  Aligned_cols=42  Identities=10%  Similarity=0.064  Sum_probs=36.3

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~   89 (411)
                      ++++++|.|| +.||++|....+.+.++.+.+ .++.++.|.++
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d   88 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMD   88 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCC
Confidence            5789999999 899999999999999999888 66777777664

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.15  E-value=5.8e-06  Score=70.53  Aligned_cols=80  Identities=16%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-------------------------------------  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-------------------------------------  219 (411)
                      +.++.++.|+++||++|+.+.+.+.++.+.   .+.+..+...                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            356899999999999999999999987653   2444332211                                     


Q ss_pred             -------CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          220 -------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       220 -------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                             .+..+++++||+++|++++ .+|.    .+.|..+.+.|.+++.+
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~----~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE----LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC----CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE----EecCCCCHHHHHHHHHh
Confidence                   2345778899999999988 4432    46788889999988865

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.14  E-value=6.6e-06  Score=70.20  Aligned_cols=88  Identities=10%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc----------------------------HhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANEH----------------------------QSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~----------------------------~~~~~   96 (411)
                      ++++++|.|| ++||++|....|.+.++.+.+++ .+.++.|.++..                            ..+++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            5789999999 99999999999999999998864 577777766421                            24677


Q ss_pred             hcCCC------cccEEEEEeC-CCCCcccCCCC----CcchhHHHHHHH
Q 015217           97 EYGIR------GFPTIKVFVP-GKPPVDYQGAR----DVKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~~----~~~~l~~~~~~~  134 (411)
                      .||+.      ..|+.++++. |+....+.|..    +.+++.+.+...
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78884      6899988864 54444444433    445566665544

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.14  E-value=1.2e-05  Score=65.71  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=66.5

Q ss_pred             CCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------------------chhHHhhCcccc
Q 015217          177 SKDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-----------------------EKSLMSKFNVQG  232 (411)
Q Consensus       177 ~~~~~lv~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-----------------------~~~l~~~~~v~~  232 (411)
                      ..++++|.||++| |++|+...+.+.++.+.+ ..+.+..|+.+.                       +..+++.|++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            3568999999999 999999999999999999 678888887663                       235777888876


Q ss_pred             ------ccEEEEEcCCCCCcccccCC-----CCHHHHHHHHHHH
Q 015217          233 ------FPTILVFGADKDSPIPYEGA-----RTAGAIESFALEQ  265 (411)
Q Consensus       233 ------~P~i~~~~~~~~~~~~y~g~-----~~~~~i~~fi~~~  265 (411)
                            .|+.+++..++.....+.|.     .+.+++.+.+.+.
T Consensus       122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence                  49999997666545555442     2446777776654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.13  E-value=9.1e-06  Score=68.36  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=67.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-------------------------------------   89 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-------------------------------------   89 (411)
                      .+++.++.|+.+||++|+.+++.+.++.+.+++++.+..+...                                     
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~~  100 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKI  100 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999988776666555431                                     


Q ss_pred             -------------------------------------ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217           90 -------------------------------------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        90 -------------------------------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                                                           .+..+++++||.++|++++  +|+.  ...|..+.+.+.+.+.
T Consensus       101 ~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~--~~~g~~~~~~l~~~i~  176 (195)
T 2znm_A          101 RLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV--GGKY--RVIFNNGFDGGVHTIK  176 (195)
T ss_dssp             CTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTE--EECCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEE--EEcCCCCHHHHHHHHH
Confidence                                                 0114567789999999654  5653  2456677888888888


Q ss_pred             HHHHHHHHH
Q 015217          133 QQIKALLKE  141 (411)
Q Consensus       133 ~~~~~~~~~  141 (411)
                      +.+.....+
T Consensus       177 ~~l~~~~~~  185 (195)
T 2znm_A          177 ELVAKVREE  185 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777655444

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.13  E-value=7e-06  Score=57.08  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=51.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh---hCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS---KFNVQGFPTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~---~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                      +++|+++||++|+...+.+.++      .+.|..+|.+.++.+.+   ++++..+|++++  + +.    ..+..+.+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~-g~----~~~g~~~~~l   69 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--D-GE----HWSGFRPERI   69 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--T-TE----EEESCCHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--C-Ce----EEcCCCHHHH
Confidence            6789999999999999988864      36777888887766555   899999999874  2 32    1344677777


Q ss_pred             HHHH
Q 015217          259 ESFA  262 (411)
Q Consensus       259 ~~fi  262 (411)
                      .+++
T Consensus        70 ~~~l   73 (75)
T 1r7h_A           70 KQLQ   73 (75)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.11  E-value=8.6e-06  Score=70.90  Aligned_cols=76  Identities=11%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc----------------------------HhHHH
Q 015217           47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANEH----------------------------QSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~----------------------------~~~~~   96 (411)
                      ++++++|.||+ .||+.|....+.+.++.+.+++ .+.++.|.++..                            .++++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            67899999999 9999999999999999999975 577877776521                            25678


Q ss_pred             hcCCC------cccEEEEEeC-CCCCcccCCCC
Q 015217           97 EYGIR------GFPTIKVFVP-GKPPVDYQGAR  122 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~~  122 (411)
                      .||+.      ..|++++++. |+....+.+..
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~  188 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDL  188 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCC
Confidence            88887      6899888864 54444444433

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.08  E-value=1.4e-05  Score=66.50  Aligned_cols=63  Identities=13%  Similarity=0.154  Sum_probs=42.6

Q ss_pred             CCCCCcEEe--Cc-cchhHHHhcCCC-eEEEEEECCCChhhhh-hhHHHHHHHHHhCC-CeE-EEEEecc
Q 015217           27 GSSSPVVQL--TP-NNFKSKVLNANG-VVLVEFYAPWCGHCQA-LTPIWEKAATVLKG-VAT-VAALDAN   89 (411)
Q Consensus        27 ~~~~~~~~l--~~-~~f~~~~~~~~~-~~~v~f~~~~C~~C~~-~~~~~~~~~~~~~~-~i~-~~~vd~~   89 (411)
                      .++..+..+  ++ +.+.-.-.-+++ ++++.||+.||+.|.. ..|.+.++.+.+++ .+. ++.|+.+
T Consensus        32 aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d  101 (184)
T 3uma_A           32 LPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVN  101 (184)
T ss_dssp             CCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS
T ss_pred             CCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            334444555  55 555522212456 4566667999999999 79999999998865 466 7777775

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.07  E-value=8.5e-06  Score=64.93  Aligned_cols=80  Identities=24%  Similarity=0.400  Sum_probs=59.9

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec-------------------------------------
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA-------------------------------------   88 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~-------------------------------------   88 (411)
                      ..++.+++.|+.++|++|+++.+.+.++     +++.+..++.                                     
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~   86 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPV   86 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCT
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence            3567899999999999999999988654     3344432211                                     


Q ss_pred             ---------cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217           89 ---------NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus        89 ---------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                               +++.++++++||+++|++++ .+|+   ...|..+.+.|.+++.+.
T Consensus        87 ~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~  137 (147)
T 3gv1_A           87 GGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKN  137 (147)
T ss_dssp             TCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHH
Confidence                     12347889999999999876 5564   467888999998888764

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.07  E-value=6.2e-06  Score=69.04  Aligned_cols=41  Identities=20%  Similarity=0.414  Sum_probs=34.3

Q ss_pred             CCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEec
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDA   88 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~   88 (411)
                      .++++|.|+..||++|+.+.|.+   .++.+.+.+++.|..++.
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~   57 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHV   57 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEEC
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEec
Confidence            46899999999999999999986   688887777777766655

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.06  E-value=9.6e-06  Score=66.38  Aligned_cols=43  Identities=14%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             CCCeEEEEEE-CCCChhhhh-hhHHHHHHHHHhCC-Ce-EEEEEecc
Q 015217           47 ANGVVLVEFY-APWCGHCQA-LTPIWEKAATVLKG-VA-TVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~-~~~~~~~~~~~~~~-~i-~~~~vd~~   89 (411)
                      ++++++|.|| ++||+.|.. ..|.+.++.+.+++ .+ .++.|+.+
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d   76 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVN   76 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            5778888876 999999999 99999999888864 57 78877765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=5.5e-06  Score=64.68  Aligned_cols=66  Identities=20%  Similarity=0.329  Sum_probs=45.3

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---H----hHHHhcCCCcccEEEEEe
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH---Q----SLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~----~~~~~~~i~~~P~~~~~~  110 (411)
                      +.+. .+...++  ++.|+++||++|+++.+.+.++.      +.+..+|++..   +    .+.+.+++..+|+++  .
T Consensus        18 ~~~~-~~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i   86 (130)
T 2cq9_A           18 NQIQ-ETISDNC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V   86 (130)
T ss_dssp             HHHH-HHHHHSS--EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--E
T ss_pred             HHHH-HHHcCCc--EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--E
Confidence            3444 3344443  34499999999999999988763      33455666644   3    378889999999974  3


Q ss_pred             CCCC
Q 015217          111 PGKP  114 (411)
Q Consensus       111 ~g~~  114 (411)
                      +|+.
T Consensus        87 ~G~~   90 (130)
T 2cq9_A           87 NGTF   90 (130)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            6653

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.05  E-value=9.2e-06  Score=66.40  Aligned_cols=83  Identities=18%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDANE--------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--------------------   90 (411)
                      +..++.+.+. ...-++++++|.|| +.||++|....+.+.++.+.  .++.++.|..+.                    
T Consensus        31 l~~~~G~~~~-l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~  107 (166)
T 3p7x_A           31 VLDNDLNQVT-LADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVITLS  107 (166)
T ss_dssp             EECTTSCEEE-GGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEE
T ss_pred             EEcCCCCEEe-HHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceEEcc
Confidence            3344444444 22235788999999 78999999999999998877  446776666542                    


Q ss_pred             ---cHhHHHhcCCCc------ccEEEEEeC-CCCCcc
Q 015217           91 ---HQSLAQEYGIRG------FPTIKVFVP-GKPPVD  117 (411)
Q Consensus        91 ---~~~~~~~~~i~~------~P~~~~~~~-g~~~~~  117 (411)
                         +.++++.||+..      .|+.++++. |+....
T Consensus       108 D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~  144 (166)
T 3p7x_A          108 DHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYK  144 (166)
T ss_dssp             CTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred             CCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence               235666777765      799888864 543333

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.04  E-value=1.4e-05  Score=68.82  Aligned_cols=88  Identities=8%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC----------------------------chhHHh
Q 015217          177 SKDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS----------------------------EKSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~----------------------------~~~l~~  226 (411)
                      ..++++|.||+ .||++|....+.+.++.+.|.++ +.+..|+++.                            +..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            45789999996 99999999999999999999874 8888888774                            224677


Q ss_pred             hCccc------cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHH
Q 015217          227 KFNVQ------GFPTILVFGADKDSPIPYEGA----RTAGAIESFALE  264 (411)
Q Consensus       227 ~~~v~------~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~  264 (411)
                      .|++.      .+|+.+++..++.....+.|.    ...+++.+.+..
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            88988      889999997666444444443    234566655543

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.03  E-value=5.4e-06  Score=67.55  Aligned_cols=43  Identities=21%  Similarity=0.234  Sum_probs=35.5

Q ss_pred             CCCeEEEEEE-CCCChhhh-hhhHHHHHHHHHhCC-CeE-EEEEecc
Q 015217           47 ANGVVLVEFY-APWCGHCQ-ALTPIWEKAATVLKG-VAT-VAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~-~~~~~~~~~~~~~~~-~i~-~~~vd~~   89 (411)
                      ++++++|.|| +.||++|. ...|.+.++.+.+++ ++. ++.|..+
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d   80 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN   80 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            6789999999 89999999 899999999988863 466 6666554

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.03  E-value=4e-05  Score=64.21  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=35.5

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA   88 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~   88 (411)
                      .+++.++.|+.++|++|..+++.+.++.+.+.+++.+..+..
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            456799999999999999999999999998877777655543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.02  E-value=1.2e-05  Score=66.12  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=65.7

Q ss_pred             CCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhcCC---eEEEEEeCCC---ch----hHHhh------------------
Q 015217          177 SKDLWIVEFFAPWCG-HCKKLAPEWKKAANNLKGK---VKLGHVDCDS---EK----SLMSK------------------  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~-~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~---~~----~l~~~------------------  227 (411)
                      ..++++|.||++||+ +|....+.+.++.+.+..+   +.+..|+++.   ..    ..+++                  
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            357899999999999 9999999999999988753   8898888762   11    11222                  


Q ss_pred             -------------------CccccccEEEEEcCCCCCcccccCCC--CHHHHHHHHHHHh
Q 015217          228 -------------------FNVQGFPTILVFGADKDSPIPYEGAR--TAGAIESFALEQL  266 (411)
Q Consensus       228 -------------------~~v~~~P~i~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~~  266 (411)
                                         +++...|+++++..++.....+.|..  +.++|.+.|.+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS  171 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence                               23445788888877665555667765  4788888887654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.01  E-value=2.1e-06  Score=70.13  Aligned_cols=103  Identities=14%  Similarity=0.208  Sum_probs=65.4

Q ss_pred             cEEeCccchhH-HHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc------------------
Q 015217           32 VVQLTPNNFKS-KVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~-~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~------------------   90 (411)
                      +...+.+.+.- ....+++++++.|| ++||++|....+.+.++.+.+++ .+.++.|..+.                  
T Consensus        16 l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l   95 (164)
T 4gqc_A           16 LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLL   95 (164)
T ss_dssp             EEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEE
T ss_pred             eECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCccccee
Confidence            33444444441 22347888888888 99999999999999888888875 47777777652                  


Q ss_pred             ---cHhHHHhcCCC----------cccEEEEEeC-CCCCcccC-----CCCCcchhHHHHHHH
Q 015217           91 ---HQSLAQEYGIR----------GFPTIKVFVP-GKPPVDYQ-----GARDVKPIAEFALQQ  134 (411)
Q Consensus        91 ---~~~~~~~~~i~----------~~P~~~~~~~-g~~~~~~~-----g~~~~~~l~~~~~~~  134 (411)
                         +.++++.||+.          ..|+.++++. |+....+.     +..+.+++++.+.+.
T Consensus        96 ~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l  158 (164)
T 4gqc_A           96 SDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI  158 (164)
T ss_dssp             ECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred             ecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence               23677888874          3577777754 44322222     233455565555543

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.01  E-value=3.8e-06  Score=66.93  Aligned_cols=65  Identities=18%  Similarity=0.324  Sum_probs=44.9

Q ss_pred             chhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---H----hHHHhcCCCcccEEEEEeC
Q 015217           39 NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH---Q----SLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        39 ~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~----~~~~~~~i~~~P~~~~~~~  111 (411)
                      .+. .+...+ . ++.|+++||++|+.+.+.+.++.      +.+..+|++..   +    .+++.+|+.++|+++  .+
T Consensus        41 ~~~-~~i~~~-~-Vvvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~  109 (146)
T 2ht9_A           41 QIQ-ETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VN  109 (146)
T ss_dssp             HHH-HHHHHC-S-EEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ET
T ss_pred             HHH-HHhcCC-C-EEEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--EC
Confidence            344 334444 3 34499999999999999998763      33455666644   3    378899999999974  36


Q ss_pred             CCC
Q 015217          112 GKP  114 (411)
Q Consensus       112 g~~  114 (411)
                      |+.
T Consensus       110 G~~  112 (146)
T 2ht9_A          110 GTF  112 (146)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            653

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.00  E-value=8.8e-06  Score=70.90  Aligned_cols=88  Identities=13%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             CCC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217           47 ANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE   97 (411)
Q Consensus        47 ~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~   97 (411)
                      +++ .+|+.|+++||+.|....+.+.++.+.+++ ++.++.|++|.                           ..++++.
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            456 466788999999999999999999998875 58888888753                           2368889


Q ss_pred             cCCC-------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHHHH
Q 015217           98 YGIR-------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFALQQ  134 (411)
Q Consensus        98 ~~i~-------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~~~  134 (411)
                      ||+.       .+|+++++.. |+....+.|.    ++.+++.+.+...
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence            9987       8999888864 5443333343    3556666666543

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.00  E-value=9.9e-06  Score=67.52  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVL   77 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~   77 (411)
                      +++++|.|+..||++|+++.|.+.++.+.+
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence            678999999999999999999999999887

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.8e-05  Score=63.12  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=74.4

Q ss_pred             hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccH---------------hHHH---hcCCCcc
Q 015217           45 LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQ---------------SLAQ---EYGIRGF  103 (411)
Q Consensus        45 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~---------------~~~~---~~~i~~~  103 (411)
                      ..+.|+++|+++++||..|..+-...   +.+.+.++.++.+...|.+...               .++.   .+++.++
T Consensus        52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~  131 (178)
T 2ec4_A           52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQF  131 (178)
T ss_dssp             TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTC
T ss_pred             hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Confidence            45688999999999999999988644   6677777778888898888654               3443   3899999


Q ss_pred             cEEEEEeCC----CCCcccCCCCCcchhHHHHHHHHHHHH
Q 015217          104 PTIKVFVPG----KPPVDYQGARDVKPIAEFALQQIKALL  139 (411)
Q Consensus       104 P~~~~~~~g----~~~~~~~g~~~~~~l~~~~~~~~~~~~  139 (411)
                      |++.++...    +.+.+..|..+++.+...+.+.++..-
T Consensus       132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~  171 (178)
T 2ec4_A          132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT  171 (178)
T ss_dssp             SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            999999532    225678999999999998887776543

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.97  E-value=2.4e-06  Score=71.88  Aligned_cols=45  Identities=18%  Similarity=0.383  Sum_probs=40.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecccc
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEH   91 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~   91 (411)
                      .++++||.||+.||+||+.+.|.|   +++.+.+++++.|..++.+.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            467899999999999999999999   999999988899999998753

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.97  E-value=2e-05  Score=57.13  Aligned_cols=74  Identities=20%  Similarity=0.388  Sum_probs=52.2

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc-----CCCcccEEEEEeCCCCCcccCCCCCc
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY-----GIRGFPTIKVFVPGKPPVDYQGARDV  124 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~-----~i~~~P~~~~~~~g~~~~~~~g~~~~  124 (411)
                      ..++.|+.+||++|++....|.+.      .+.|-.+|++++++..+.+     |.+.+|+++ +.+|..+.    ..+.
T Consensus         4 a~I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~l~----~~~~   72 (92)
T 2lqo_A            4 AALTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGSTLT----NPSA   72 (92)
T ss_dssp             SCEEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCEEE----SCCH
T ss_pred             CcEEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEEEe----CCCH
Confidence            357889999999999999887652      4677788888776543332     788999964 45665332    2466


Q ss_pred             chhHHHHHHH
Q 015217          125 KPIAEFALQQ  134 (411)
Q Consensus       125 ~~l~~~~~~~  134 (411)
                      +++.+++.+.
T Consensus        73 ~el~~~L~el   82 (92)
T 2lqo_A           73 DEVKAKLVKI   82 (92)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6777777654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.97  E-value=2.8e-05  Score=63.20  Aligned_cols=86  Identities=12%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC---------------------chhHHhhCcccc--
Q 015217          178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS---------------------EKSLMSKFNVQG--  232 (411)
Q Consensus       178 ~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~---------------------~~~l~~~~~v~~--  232 (411)
                      .++++|.||+ .||+.|....+.+.++.+.|.++ +.+..|+++.                     +..+++.||+..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            4588999997 99999999999999999999764 8888887663                     234777888876  


Q ss_pred             ----------ccEEEEEcCCCCCcccccCCC---CHHHHHHHHH
Q 015217          233 ----------FPTILVFGADKDSPIPYEGAR---TAGAIESFAL  263 (411)
Q Consensus       233 ----------~P~i~~~~~~~~~~~~y~g~~---~~~~i~~fi~  263 (411)
                                .|+.+++..++.....+.|..   ..+++.+.+.
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~  158 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALK  158 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHH
Confidence                      899999977665444454322   2344554443

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.96  E-value=1.1e-05  Score=58.72  Aligned_cols=70  Identities=11%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-----cc----HhHHHhcCCCcccEEEEEeCCCCCcccCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-----EH----QSLAQEYGIRGFPTIKVFVPGKPPVDYQGA  121 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-----~~----~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~  121 (411)
                      .++.|+++||++|++..+.+.+..      +.+-.+|++     ..    +++.+.+++..+|++++  +|+.    -+.
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~----i~G   80 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH----VLG   80 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE----EES
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE----EeC
Confidence            367899999999999998888753      233345555     23    56778899999999876  5532    233


Q ss_pred             CCcchhHHHHH
Q 015217          122 RDVKPIAEFAL  132 (411)
Q Consensus       122 ~~~~~l~~~~~  132 (411)
                      .+.+.+.+++.
T Consensus        81 ~~~~~l~~~l~   91 (92)
T 3ic4_A           81 YNEEKLKELIR   91 (92)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHhc
Confidence            47777777653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.96  E-value=3.9e-05  Score=63.19  Aligned_cols=41  Identities=17%  Similarity=0.142  Sum_probs=34.1

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEe
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALD   87 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~i~~~~vd   87 (411)
                      ..++.++.|+..+|++|+.+++.+.++.+.+  .+++.+...+
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~   68 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   68 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEe
Confidence            4678999999999999999999999988888  6666665443

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=97.94  E-value=1.4e-05  Score=65.00  Aligned_cols=70  Identities=9%  Similarity=-0.003  Sum_probs=50.8

Q ss_pred             EeCccchhHHHhcCCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---HhHHHhcCCCcccE
Q 015217           34 QLTPNNFKSKVLNANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFPT  105 (411)
Q Consensus        34 ~l~~~~f~~~~~~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~  105 (411)
                      ..+.+.+. ...-++++++|.||+ .||++|....|.+.++.+.+ .++.++.|.++..   .++++++++..+|.
T Consensus        29 ~~~G~~v~-l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~  102 (163)
T 1psq_A           29 TTDLSKKS-LADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIM  102 (163)
T ss_dssp             CTTSCEEE-GGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEE
T ss_pred             cCCCcEee-HHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEE
Confidence            33444444 222367899999995 99999999999999999888 6788888888743   34566777644553

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.93  E-value=2.1e-05  Score=64.83  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----------------------chhHHhhCccccc-
Q 015217          178 KDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDS----------------------EKSLMSKFNVQGF-  233 (411)
Q Consensus       178 ~~~~lv~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~----------------------~~~l~~~~~v~~~-  233 (411)
                      .++++|.||+.| |++|+...+.+.++.+.  ..+.+..|+.+.                      +..+++.|++... 
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  121 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD  121 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence            568999999999 99999999999999988  568888887662                      2457888998876 


Q ss_pred             --------cEEEEEcCCCCCccccc
Q 015217          234 --------PTILVFGADKDSPIPYE  250 (411)
Q Consensus       234 --------P~i~~~~~~~~~~~~y~  250 (411)
                              |+.+++..++.....+.
T Consensus       122 ~~~~g~~~p~~~lid~~G~I~~~~~  146 (175)
T 1xvq_A          122 GPMAGLLARAIVVIGADGNVAYTEL  146 (175)
T ss_dssp             STTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             cccCCcccceEEEECCCCeEEEEEE
Confidence                    89888876665444554

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.92  E-value=1.3e-05  Score=57.93  Aligned_cols=55  Identities=22%  Similarity=0.406  Sum_probs=44.0

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--ccHhHHHhc-CCCcccEEEEEeCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--EHQSLAQEY-GIRGFPTIKVFVPGK  113 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~~~~~~~~~-~i~~~P~~~~~~~g~  113 (411)
                      .++.|+++||++|++..+.+++..      +.+..+|++  ...++.+.+ ++.++|++++  +|+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~   64 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDASTSLRQEMVQRANGRNTFPQIFI--GDY   64 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence            477899999999999999887752      567778887  556788889 9999999743  554

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.92  E-value=1.9e-05  Score=69.22  Aligned_cols=74  Identities=11%  Similarity=0.181  Sum_probs=56.6

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc----------------------------HhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANEH----------------------------QSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~----------------------------~~~~~   96 (411)
                      ++++++|.|| +.||+.|....+.+.++.+.+++ .+.++.|.++..                            .++++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            6789999999 99999999999999999999975 577877777521                            25677


Q ss_pred             hcCCC------cccEEEEEeC-CCCCcccCC
Q 015217           97 EYGIR------GFPTIKVFVP-GKPPVDYQG  120 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~-g~~~~~~~g  120 (411)
                      .||+.      .+|++++++. |+....+.+
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~  200 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLN  200 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEec
Confidence            88885      5799888864 544344444

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.91  E-value=1.2e-05  Score=65.63  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---hHHHhcCCCccc
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFP  104 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P  104 (411)
                      ++++++|.|| +.||++|....|.+.++.+.+ .++.++.|..+...   ++++++++..+|
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~  102 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAK  102 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceE
Confidence            5789999999 899999999999999999998 67888888887433   244455553344

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.91  E-value=7.5e-06  Score=62.71  Aligned_cols=58  Identities=26%  Similarity=0.470  Sum_probs=43.8

Q ss_pred             EEEEECCCChhhhhh-hHHHHHHHHHhCCCeEEEEEeccccH-------hHHHhcCCCcccEEEEEeCCCC
Q 015217           52 LVEFYAPWCGHCQAL-TPIWEKAATVLKGVATVAALDANEHQ-------SLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++.|+++||++|+++ .+.+.+...   ..+.+..+|++.++       ++.+.+|+..+|++  |.+|+.
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~   92 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKH   92 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            666999999999998 777765431   23677788888653       58888999999996  446654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.90  E-value=2.3e-05  Score=68.23  Aligned_cols=86  Identities=17%  Similarity=0.301  Sum_probs=62.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--------------------------------------
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--------------------------------------  219 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--------------------------------------  219 (411)
                      .+..++.|+++||++|+.+.+.+.++.+.  +++.+..+...                                      
T Consensus        97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           97 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            45789999999999999999999887765  45666554331                                      


Q ss_pred             ------------CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          220 ------------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       220 ------------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                                  .+..+++++||.++|++++...++. .....|..+.+.|.+++.+..
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC--
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHHH
Confidence                        1234667899999999999764332 345678888888888876543

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.88  E-value=2.4e-05  Score=55.28  Aligned_cols=69  Identities=10%  Similarity=0.161  Sum_probs=49.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh---hCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS---KFNVQGFPTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~---~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                      ++.|+++||++|+...+.+.+.      .+.|..+|++.++.+.+   ++|+..+|++++  ++.     ..+..+.+.|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~~--~g~-----~~~g~~~~~l   69 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDL-----SWSGFRPDMI   69 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTE-----EEESCCHHHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEEEE--CCE-----EEecCCHHHH
Confidence            6789999999999999988763      36777888887765544   589999999843  332     1234566666


Q ss_pred             HHHHH
Q 015217          259 ESFAL  263 (411)
Q Consensus       259 ~~fi~  263 (411)
                      .+++.
T Consensus        70 ~~~l~   74 (81)
T 1h75_A           70 NRLHP   74 (81)
T ss_dssp             GGGSC
T ss_pred             HHHHh
Confidence            66553

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.87  E-value=2.8e-05  Score=57.35  Aligned_cols=60  Identities=12%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc-----CCCcccEEEEEeCCCC
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY-----GIRGFPTIKVFVPGKP  114 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~-----~i~~~P~~~~~~~g~~  114 (411)
                      +...-++.|+++||++|+++.+.|.+..      +.+..+|++.+++..+.+     |...+|+++  .+|+.
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~if--i~g~~   77 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANGKRSLPQIF--IDDQH   77 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEEE--ETTEE
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE--ECCEE
Confidence            4566788899999999999999988753      456678888776544433     899999874  36643

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.87  E-value=3.2e-05  Score=64.76  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC  218 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~  218 (411)
                      +.++.++.|++.||++|+.+.+.+.++.+.+..++.|..+..
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            457899999999999999999999999999988887776654

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.86  E-value=3.1e-05  Score=57.84  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=44.7

Q ss_pred             HHhcCCCeEEEEEEC-----CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217           43 KVLNANGVVLVEFYA-----PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      .+...+ .++ .|+.     +||++|+++.+.+.+..      +.+..+|++.++.    +.+.+|..++|+++  .+|+
T Consensus        12 ~~i~~~-~vv-vf~~g~~~~~~C~~C~~~~~~L~~~~------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~--i~g~   81 (105)
T 2yan_A           12 VLTNKA-SVM-LFMKGNKQEAKCGFSKQILEILNSTG------VEYETFDILEDEEVRQGLKAYSNWPTYPQLY--VKGE   81 (105)
T ss_dssp             HHHTSS-SEE-EEESBCSSSBCTTHHHHHHHHHHHHT------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--ETTE
T ss_pred             HHhccC-CEE-EEEecCCCCCCCccHHHHHHHHHHCC------CCeEEEECCCCHHHHHHHHHHHCCCCCCeEE--ECCE
Confidence            334444 344 4777     99999999999987763      5677888887765    55568999999974  3665


Q ss_pred             C
Q 015217          114 P  114 (411)
Q Consensus       114 ~  114 (411)
                      .
T Consensus        82 ~   82 (105)
T 2yan_A           82 L   82 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.84  E-value=1e-05  Score=60.47  Aligned_cols=55  Identities=20%  Similarity=0.303  Sum_probs=41.5

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-------hhHHhhCccccccEEEE
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE-------KSLMSKFNVQGFPTILV  238 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~-------~~l~~~~~v~~~P~i~~  238 (411)
                      .++.|+++||++|+.+.+.+.+++..+.+   |..+|++.+       ..+.+.+|+.++|++++
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~   74 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEE
Confidence            36779999999999999999887655432   444555544       35778899999999743

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.84  E-value=6.4e-05  Score=61.72  Aligned_cols=55  Identities=20%  Similarity=0.164  Sum_probs=35.8

Q ss_pred             eCccchhHHHhcCCCeEE-EEEECCCChhhh-hhhHHHHHHHHHhCC-CeEEEE-Eecc
Q 015217           35 LTPNNFKSKVLNANGVVL-VEFYAPWCGHCQ-ALTPIWEKAATVLKG-VATVAA-LDAN   89 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~-v~f~~~~C~~C~-~~~~~~~~~~~~~~~-~i~~~~-vd~~   89 (411)
                      .+.+.+.-.-.-++++++ +.||+.||+.|. ...|.+.++.+++++ .+.++. +..+
T Consensus        30 ~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D   88 (173)
T 3mng_A           30 EPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN   88 (173)
T ss_dssp             STTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS
T ss_pred             CCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence            444555522222566554 455599999999 588999999998865 355543 5554

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.81  E-value=5.7e-05  Score=63.19  Aligned_cols=40  Identities=15%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             CCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEe
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALD   87 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd   87 (411)
                      +++.+|.|+..+|++|++++|.+   .++.+.+.+++.+..++
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~   63 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYH   63 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEE
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEe
Confidence            47899999999999999999986   68999887655555444

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.81  E-value=8.4e-05  Score=60.88  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=43.0

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEecc
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCG-HCQALTPIWEKAATVLK---GVATVAALDAN   89 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~i~~~~vd~~   89 (411)
                      +....+.+++.+. ...-++++++|.||.+||+ .|....+.+.++.+.++   .++.++.|.+|
T Consensus        14 dF~L~d~~G~~v~-l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           14 TFQFTNQDGKPFG-TKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             CCEEECTTSCEEE-HHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CcEEECCCCCEEe-HHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            3334455556555 3333689999999999997 69999998888877764   25777777654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.81  E-value=0.00031  Score=61.01  Aligned_cols=44  Identities=18%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             CCCeEEEEEe-CCCChhhh-hhhHHHHHHHHHhcC-Ce-EEEEEeCCC
Q 015217          177 SKDLWIVEFF-APWCGHCK-KLAPEWKKAANNLKG-KV-KLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~-~~~~~~~~~a~~~~~-~~-~f~~v~~~~  220 (411)
                      ..++++|.|| ++||++|. ...+.+.++++.|++ .+ .+..|+.+.
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~   79 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVND   79 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCC
Confidence            3567888898 99999999 899999999998875 47 787777554

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.78  E-value=0.0001  Score=61.80  Aligned_cols=43  Identities=28%  Similarity=0.432  Sum_probs=38.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~  219 (411)
                      ..++.++.|++.||++|+.+.+.+.++.+.+.+++.|..++..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            4678999999999999999999999999999888888888764

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.77  E-value=0.00021  Score=60.77  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..++++|.||++||++|+ ..+.+.++.++|.++ +.+..|+|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            457999999999999999 788999999999764 888888875

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.75  E-value=2.8e-05  Score=65.61  Aligned_cols=70  Identities=13%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---hHHHhcCCCccc
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFP  104 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P  104 (411)
                      ...+.+.+. ...-++++++|.|| +.||+.|....+.+.++.+.+ .++.++.|.++...   ++++++++..+|
T Consensus        64 ~d~~G~~v~-L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~f~  137 (200)
T 3zrd_A           64 VAKDLSDVA-LSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEGLSNVI  137 (200)
T ss_dssp             ECTTSCEEE-GGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             ECCCCCEEc-HHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcCCCCce
Confidence            334444444 22236789999999 679999999999999999998 56888888877433   234455553444

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.73  E-value=5.2e-05  Score=53.57  Aligned_cols=55  Identities=11%  Similarity=0.225  Sum_probs=41.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCCcccEEEEEeCCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++.|+++||++|+++.+.+.+.      .+.+..+|++.++    ++.+.+++.++|+++  .+|+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~   61 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQH   61 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            6789999999999999888764      2456667776543    466788999999974  35643

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.71  E-value=5.7e-05  Score=54.82  Aligned_cols=55  Identities=20%  Similarity=0.418  Sum_probs=41.6

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCCcccEEEEEeCCC
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      .++.|+++||++|++..+.+.+.      .+.+..+|+++++    ++.+.+++.++|++  +.+|+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~   65 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSV   65 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            47789999999999999888764      3566777887654    35558899999975  33564

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.70  E-value=8.3e-05  Score=55.27  Aligned_cols=73  Identities=11%  Similarity=0.085  Sum_probs=47.3

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-----HhHH----HhcCCCcccEEEEEeCCCCCccc
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-----QSLA----QEYGIRGFPTIKVFVPGKPPVDY  118 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-----~~~~----~~~~i~~~P~~~~~~~g~~~~~~  118 (411)
                      ++..++.|+++||++|++..+.+.+..      +.+-.+|++..     +++.    +..+..++|++++  +|+   ++
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---~~   88 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---KA   88 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---EE
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---EE
Confidence            445677899999999999999988753      33444555531     2332    3468999999765  331   23


Q ss_pred             CCCCCcchhHHHH
Q 015217          119 QGARDVKPIAEFA  131 (411)
Q Consensus       119 ~g~~~~~~l~~~~  131 (411)
                      -|..+.+.|.+++
T Consensus        89 igg~~~~~l~~~L  101 (103)
T 3nzn_A           89 IVGFKEKEIRESL  101 (103)
T ss_dssp             EESCCHHHHHHHT
T ss_pred             EEcCCHHHHHHHh
Confidence            3556666665543

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.70  E-value=0.00012  Score=59.15  Aligned_cols=75  Identities=11%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---------------------chhHHhhCcccccc-
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------------------EKSLMSKFNVQGFP-  234 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------------------~~~l~~~~~v~~~P-  234 (411)
                      .++++|.|| +.||+.|....+.+.++.+.|.++-.+..|+++.                     +..+++.||+...| 
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~  114 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL  114 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence            346788887 8999999999999999999997632666666543                     33577788888878 


Q ss_pred             -----EEEEEcCCCCCcccccCCC
Q 015217          235 -----TILVFGADKDSPIPYEGAR  253 (411)
Q Consensus       235 -----~i~~~~~~~~~~~~y~g~~  253 (411)
                           +.+++ .++.....+.|..
T Consensus       115 ~g~~~~~~li-~~G~i~~~~~g~~  137 (159)
T 2a4v_A          115 SGSIRSHFIF-VDGKLKFKRVKIS  137 (159)
T ss_dssp             SCBCCEEEEE-ETTEEEEEEESCC
T ss_pred             CCccceEEEE-cCCEEEEEEccCC
Confidence                 55555 4554344555543

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.69  E-value=3e-05  Score=63.65  Aligned_cols=57  Identities=16%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             CeEEEEEECCCChhhhhh-hHHHHHHHHHhCC-CeE-EEEEeccc---cHhHHHhcCCC-cccE
Q 015217           49 GVVLVEFYAPWCGHCQAL-TPIWEKAATVLKG-VAT-VAALDANE---HQSLAQEYGIR-GFPT  105 (411)
Q Consensus        49 ~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~-~i~-~~~vd~~~---~~~~~~~~~i~-~~P~  105 (411)
                      +++++.||++||++|... .|.+.++.+.+++ .+. ++.|+.+.   ...+++++++. .+|.
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~  108 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEF  108 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEE
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEE
Confidence            578889999999999998 9999999888864 466 88887764   34577788873 6774

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.69  E-value=3.9e-05  Score=59.80  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---h----hHHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE---K----SLMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~----~l~~~~~v~~~P~i~~  238 (411)
                      ++.|+++||++|+.+.+.+.++.      +.|..++++.+   +    .+.+.+++..+|++++
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            45599999999999999998763      34555666654   3    3778899999999853

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.68  E-value=0.00012  Score=62.77  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hhHHh
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE----------------------------KSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~----------------------------~~l~~  226 (411)
                      ..++++|.|| ++||+.|....+.+.++.++|.+ .+.+..|+.+..                            ..+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            3568999999 99999999999999999999864 577777776542                            13555


Q ss_pred             hCcc-----ccccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHH
Q 015217          227 KFNV-----QGFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQ  265 (411)
Q Consensus       227 ~~~v-----~~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  265 (411)
                      .||+     ...|+.+++..++.....+.|.    .+.+++.+.+...
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            6666     2568888887655433333342    3566777666554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.68  E-value=1.5e-05  Score=60.56  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHhhCccccccEEEE
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMSKFNVQGFPTILV  238 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~l~~~~~v~~~P~i~~  238 (411)
                      ..++.|+++||++|+...+.+.++.... ++  |..+|++.++       .+.+.+|+.++|++++
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            3578899999999999999887654331 12  6677776553       6888999999998754

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.65  E-value=0.0002  Score=51.80  Aligned_cols=75  Identities=13%  Similarity=0.314  Sum_probs=53.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC-----ccccccEEEEEcCCCCCcccccCCCCH
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF-----NVQGFPTILVFGADKDSPIPYEGARTA  255 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~-----~v~~~P~i~~~~~~~~~~~~y~g~~~~  255 (411)
                      .++.|.++|||+|......+.+      ..+.|-.+|.+.+++..+.+     |.+.+|+|++ .++.  .   -+..+.
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~------~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~--~---l~~~~~   72 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTA------NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGS--T---LTNPSA   72 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSC--E---EESCCH
T ss_pred             cEEEEcCCCCHhHHHHHHHHHh------cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCE--E---EeCCCH
Confidence            4788999999999999988875      24777788888877654433     6778998876 3322  1   123577


Q ss_pred             HHHHHHHHHHhh
Q 015217          256 GAIESFALEQLE  267 (411)
Q Consensus       256 ~~i~~fi~~~~~  267 (411)
                      ++|.+++.+..+
T Consensus        73 ~el~~~L~el~g   84 (92)
T 2lqo_A           73 DEVKAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            888888877643

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=97.64  E-value=0.00026  Score=58.47  Aligned_cols=86  Identities=12%  Similarity=0.094  Sum_probs=60.3

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC---------------------chhHHhhCcccc--
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS---------------------EKSLMSKFNVQG--  232 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~---------------------~~~l~~~~~v~~--  232 (411)
                      .++++|.|| +.||+.|....+.+.++.+.|.++ +.+..|+++.                     +..+++.|++..  
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~  130 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK  130 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence            457788887 999999999999999999999874 7888787664                     234677777753  


Q ss_pred             ----------ccEEEEEcCCCCCcccccCC---CCHHHHHHHHH
Q 015217          233 ----------FPTILVFGADKDSPIPYEGA---RTAGAIESFAL  263 (411)
Q Consensus       233 ----------~P~i~~~~~~~~~~~~y~g~---~~~~~i~~fi~  263 (411)
                                .|+.+++..++.....+.+.   ...+++.+.+.
T Consensus       131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~  174 (179)
T 3ixr_A          131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLK  174 (179)
T ss_dssp             CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHH
T ss_pred             cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHH
Confidence                      58889987666434344332   23345555544

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=97.63  E-value=0.00017  Score=59.93  Aligned_cols=89  Identities=11%  Similarity=0.011  Sum_probs=62.4

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-------------------------hhHHhhCcc
Q 015217          178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE-------------------------KSLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~-------------------------~~l~~~~~v  230 (411)
                      .++++|.||+ .||+.|....+.+.++.+.|.+ .+.+..|+.+..                         ..+++.||+
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv  109 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence            5788999995 9999999999999999998875 477777776542                         124455555


Q ss_pred             c------cccEEEEEcCCCCCcccccCCC----CHHHHHHHHHHHh
Q 015217          231 Q------GFPTILVFGADKDSPIPYEGAR----TAGAIESFALEQL  266 (411)
Q Consensus       231 ~------~~P~i~~~~~~~~~~~~y~g~~----~~~~i~~fi~~~~  266 (411)
                      .      ..|+.+++..++.....+.|..    +.+++.+.+....
T Consensus       110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            4      2588888876664444444433    4677777765543

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.63  E-value=7e-05  Score=65.17  Aligned_cols=86  Identities=10%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHhhCccc
Q 015217          180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKFNVQ  231 (411)
Q Consensus       180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~l~~~~~v~  231 (411)
                      .+++.|+++||+.|....+.+.+++..|.. .+.+..|+++.                           +..+++.||+.
T Consensus        36 vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~  115 (249)
T 3a2v_A           36 FVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLL  115 (249)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCC
T ss_pred             EEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCc
Confidence            456678899999999999999999999976 48888888764                           23577888886


Q ss_pred             -------cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHH
Q 015217          232 -------GFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQ  265 (411)
Q Consensus       232 -------~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  265 (411)
                             .+|+++++..++.....+.|.    .+.++|.+.|...
T Consensus       116 ~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          116 HAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             CTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence                   789999997666433333343    3677887777554

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.61  E-value=7.7e-05  Score=56.49  Aligned_cols=62  Identities=19%  Similarity=0.452  Sum_probs=42.3

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----H----hHHHhcCCCcccEEEEEeCCCC
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----Q----SLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~----~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      .+..+++  ++.|+++||++|++..+.|.+..      +.+..+|++..    +    .+.+..|...+|+++  .+|+.
T Consensus        14 ~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~   83 (113)
T 3rhb_A           14 KTVTENT--VVIYSKTWCSYCTEVKTLFKRLG------VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVF--VCGKH   83 (113)
T ss_dssp             HHHHHSS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEE--ETTEE
T ss_pred             HHHhcCC--EEEEECCCChhHHHHHHHHHHcC------CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            4444444  67799999999999999887642      33445666542    2    255567999999974  46653

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.59  E-value=0.00029  Score=57.61  Aligned_cols=90  Identities=10%  Similarity=0.013  Sum_probs=66.1

Q ss_pred             CCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhc---CCeEEEEEeCCC---------------------------c----h
Q 015217          178 KDLWIVEFFAPWCG-HCKKLAPEWKKAANNLK---GKVKLGHVDCDS---------------------------E----K  222 (411)
Q Consensus       178 ~~~~lv~f~~~~c~-~c~~~~~~~~~~a~~~~---~~~~f~~v~~~~---------------------------~----~  222 (411)
                      .++++|.||++||+ .|....+.+.++.+.+.   ..+.+..|+++.                           +    .
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            67899999999997 69999999999999996   357777776541                           0    1


Q ss_pred             hHHhhCc---------cccccEEEEEcCCCCCcccccCC-CCHHHHHHHHHHHhh
Q 015217          223 SLMSKFN---------VQGFPTILVFGADKDSPIPYEGA-RTAGAIESFALEQLE  267 (411)
Q Consensus       223 ~l~~~~~---------v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~  267 (411)
                      .+++.||         +...|+++++..++.....|.|. .+.++|.+.|.+...
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~  162 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARG  162 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhc
Confidence            3555544         33457888887766544456674 678899888887754

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.58  E-value=0.00047  Score=58.33  Aligned_cols=42  Identities=12%  Similarity=0.083  Sum_probs=36.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..++++|.||++||++| ...+.+.++.++|.++ +.+..|+++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            45799999999999999 5788999999999864 888888765

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=97.57  E-value=0.00024  Score=60.42  Aligned_cols=89  Identities=7%  Similarity=0.105  Sum_probs=62.8

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hhHHh
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE----------------------------KSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~----------------------------~~l~~  226 (411)
                      ..++++|.|| ++||+.|....+.+.++.++|.. .+.+..|+++..                            ..+++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            3568999999 99999999999999999999975 477777776532                            23555


Q ss_pred             hCccc------cccEEEEEcCCCCCcccccCC----CCHHHHHHHHHHH
Q 015217          227 KFNVQ------GFPTILVFGADKDSPIPYEGA----RTAGAIESFALEQ  265 (411)
Q Consensus       227 ~~~v~------~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  265 (411)
                      .||+.      ..|+.+++..++.....+.|.    .+.+++.+.+...
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            66663      478888887666433333343    3556777666553

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.57  E-value=0.00013  Score=53.72  Aligned_cols=55  Identities=15%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC-----ccccccEEEE
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF-----NVQGFPTILV  238 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~-----~v~~~P~i~~  238 (411)
                      ....++.|+++||++|+...+.+.+..      +.|..+|.+.++...+.+     |...+|++++
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi   73 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANGKRSLPQIFI   73 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEE
Confidence            345678899999999999999998763      556677887776554444     8889998854

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.56  E-value=8.8e-05  Score=53.77  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----Cc----hhHHhhCccccccEEEEEcCCCCCcccccC
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----SE----KSLMSKFNVQGFPTILVFGADKDSPIPYEG  251 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----~~----~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g  251 (411)
                      .+++|+++||++|+.....+.++.      +.+..++.+     ..    ..+.+.+++..+|++++  + +.    .-|
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~-g~----~i~   79 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--G-DK----HVL   79 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--T-TE----EEE
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--C-CE----EEe
Confidence            367899999999999999888764      333345544     22    55667889999999887  2 21    234


Q ss_pred             CCCHHHHHHHHH
Q 015217          252 ARTAGAIESFAL  263 (411)
Q Consensus       252 ~~~~~~i~~fi~  263 (411)
                      .++.+.|.+++.
T Consensus        80 G~~~~~l~~~l~   91 (92)
T 3ic4_A           80 GYNEEKLKELIR   91 (92)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHhc
Confidence            568888888763

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.54  E-value=7.9e-05  Score=53.68  Aligned_cols=52  Identities=23%  Similarity=0.454  Sum_probs=41.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--CchhHHhhC-ccccccEEEE
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--SEKSLMSKF-NVQGFPTILV  238 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--~~~~l~~~~-~v~~~P~i~~  238 (411)
                      .+++|+++||++|+...+.+.+..      +.|..+|.+  ....+.+.+ ++..+|++++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~   61 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDASTSLRQEMVQRANGRNTFPQIFI   61 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSCHHHHHHHHHHHHSSCCSCEEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECCHHHHHHHHHHhCCCCCcCEEEE
Confidence            477899999999999999888753      567778877  455678888 9999999854

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.52  E-value=4.3e-05  Score=58.44  Aligned_cols=54  Identities=17%  Similarity=0.240  Sum_probs=41.0

Q ss_pred             EEEEeCCCChhhhhh-hHHHHHHHHHhcCCeEEEEEeCCCch-------hHHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKL-APEWKKAANNLKGKVKLGHVDCDSEK-------SLMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~-~~~~~~~a~~~~~~~~f~~v~~~~~~-------~l~~~~~v~~~P~i~~  238 (411)
                      ++.|+++||++|+.. .+.+.+...   ..+.|..+|.+.++       .+.+.+|+.++|++++
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vfi   88 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYI   88 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            667999999999999 887766441   23677777776543       5888899999998743

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.51  E-value=0.00013  Score=52.44  Aligned_cols=73  Identities=11%  Similarity=0.063  Sum_probs=49.6

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcCC-----CcccEEEEEeCCCCCcccCC
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGI-----RGFPTIKVFVPGKPPVDYQG  120 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i-----~~~P~~~~~~~g~~~~~~~g  120 (411)
                      ..++.|+++||++|++....+.+..    -.+.+..+|.+.+    .++.+.+|.     ..+|++++  +|+.+.    
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~----   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG----   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE----
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe----
Confidence            4588899999999999988776543    2356666666654    457778888     99999854  564321    


Q ss_pred             CCCcchhHHHHHHH
Q 015217          121 ARDVKPIAEFALQQ  134 (411)
Q Consensus       121 ~~~~~~l~~~~~~~  134 (411)
                        ..+++.+++.+.
T Consensus        74 --g~~~i~~~~~~~   85 (89)
T 3msz_A           74 --GFTELKANADKI   85 (89)
T ss_dssp             --SHHHHHHTHHHH
T ss_pred             --ChHHHHHHHHHH
Confidence              344555555543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.48  E-value=0.00027  Score=57.84  Aligned_cols=42  Identities=10%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS  220 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~  220 (411)
                      .++++|.|| +.||+.|....+.+.++.+.+ ..+.+..|+.+.
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~   89 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDL   89 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSC
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCC
Confidence            468889998 799999999999999999888 668888777654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.45  E-value=9.3e-05  Score=59.73  Aligned_cols=87  Identities=13%  Similarity=0.277  Sum_probs=51.8

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc---------------------hhHHhhCccc--
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE---------------------KSLMSKFNVQ--  231 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~---------------------~~l~~~~~v~--  231 (411)
                      ..+++++.|| +.||++|....+.+.++..++.. .+.+..|+.+..                     ..+++.||+.  
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            3567888888 99999999999999888888876 477777775542                     2356667663  


Q ss_pred             ---------cccEEEEEcCCCCCcccc-----cCCCCHHHHHHHHH
Q 015217          232 ---------GFPTILVFGADKDSPIPY-----EGARTAGAIESFAL  263 (411)
Q Consensus       232 ---------~~P~i~~~~~~~~~~~~y-----~g~~~~~~i~~fi~  263 (411)
                               ..|+.+++..++.....+     .+..+.+++.+.+.
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~  154 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVK  154 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred             cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence                     246777776555322222     23345666666553

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.45  E-value=0.00049  Score=59.69  Aligned_cols=88  Identities=7%  Similarity=0.143  Sum_probs=62.8

Q ss_pred             CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hhHHh
Q 015217          177 SKDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE----------------------------KSLMS  226 (411)
Q Consensus       177 ~~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~----------------------------~~l~~  226 (411)
                      ..++++|.||+ .||+.|....+.+.++.+.|++ .+.+..|+++..                            ..+++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            35788999998 9999999999999999999986 478877776642                            23566


Q ss_pred             hCccc------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHHH
Q 015217          227 KFNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFALE  264 (411)
Q Consensus       227 ~~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~  264 (411)
                      .||+.      .+|+.+++..++.....+.+    ..+.+++.+.+..
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            67776      57999998766643333333    2345666666543

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.45  E-value=0.00014  Score=57.74  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---h----hHHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE---K----SLMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~----~l~~~~~v~~~P~i~~  238 (411)
                      ++.|+++||++|+.+.+.+.++.      +.|..++++.+   +    .+++.+|+..+|++++
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi  108 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV  108 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE
Confidence            45599999999999999998764      33445555543   3    3778899999999853

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.45  E-value=0.00066  Score=57.74  Aligned_cols=99  Identities=9%  Similarity=0.011  Sum_probs=62.9

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCC-Chhhh-----hhhHHHHHHHHHhCCCeEEEEEeccc---------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPW-CGHCQ-----ALTPIWEKAATVLKGVATVAALDANE---------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~-C~~C~-----~~~~~~~~~~~~~~~~i~~~~vd~~~---------------   90 (411)
                      +...+.+.+. ...-.+++++|.||+.| |+.|.     ...+.+.+.   +. .+.++.|.++.               
T Consensus        33 L~d~~G~~vs-Lsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~-gv~VvgIS~Ds~~~~~~f~~~~gl~~  107 (224)
T 3keb_A           33 LVDDQKHDAA-LESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP-HLKLIVITVDSPSSLARARHEHGLPN  107 (224)
T ss_dssp             EEETTSCEEE-GGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT-TSEEEEEESSCHHHHHHHHHHHCCTT
T ss_pred             EECCCCCEEe-HHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC-CCEEEEEECCCHHHHHHHHHHcCCCC
Confidence            3444444444 22235789999999998 99999     777777766   43 45666665531               


Q ss_pred             --------cHhHHHhcCCCc---------ccEEEEEeC-CCCCcc-----cCCCCCcchhHHHHHHHH
Q 015217           91 --------HQSLAQEYGIRG---------FPTIKVFVP-GKPPVD-----YQGARDVKPIAEFALQQI  135 (411)
Q Consensus        91 --------~~~~~~~~~i~~---------~P~~~~~~~-g~~~~~-----~~g~~~~~~l~~~~~~~~  135 (411)
                              +..+++.||+..         .|+.++++. |.....     +.+..+.+.+.+.+....
T Consensus       108 fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          108 IALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             CEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             ceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence                    246888898875         698888864 543222     223455666776665543

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.43  E-value=0.0025  Score=52.18  Aligned_cols=92  Identities=10%  Similarity=0.115  Sum_probs=69.2

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCch---------------hHH---hhCcccccc
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEK---------------SLM---SKFNVQGFP  234 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~---------------~l~---~~~~v~~~P  234 (411)
                      +..+..+|+++++||..|..+-...   .++.+.++.++.+...|.+...               .++   +.+++.++|
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P  132 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFP  132 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCS
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCC
Confidence            3467999999999999999886543   6677777778888888877654               233   338999999


Q ss_pred             EEEEEcCCC---CCcccccCCCCHHHHHHHHHHHhh
Q 015217          235 TILVFGADK---DSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       235 ~i~~~~~~~---~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      .+.++...+   +...+..|..+.+++.+.+...+.
T Consensus       133 ~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e  168 (178)
T 2ec4_A          133 LFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAME  168 (178)
T ss_dssp             EEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHH
Confidence            999995433   223457899999988887766553

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=97.40  E-value=0.00048  Score=55.78  Aligned_cols=43  Identities=12%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 015217          177 SKDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~  220 (411)
                      ..++++|.||+ .||+.|....+.+.++.+++ ..+.+..|+.+.
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~   84 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDL   84 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCC
Confidence            35688999995 99999999999999999888 667777777553

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.39  E-value=0.00057  Score=58.89  Aligned_cols=87  Identities=13%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-----------------------------cHhHHH
Q 015217           48 NGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-----------------------------HQSLAQ   96 (411)
Q Consensus        48 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-----------------------------~~~~~~   96 (411)
                      ++++++.|| ++||+.|....+.+.++.++++. ++.++.|.++.                             ..++++
T Consensus        29 k~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~  108 (233)
T 2v2g_A           29 NSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAV  108 (233)
T ss_dssp             SSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHH
Confidence            348888888 89999999999999999988864 57777776652                             124667


Q ss_pred             hcCCC------------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHHHH
Q 015217           97 EYGIR------------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFALQQ  134 (411)
Q Consensus        97 ~~~i~------------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~~~  134 (411)
                      .||+.            ..|++++++. |+....+.+.    ++.+++.+.+...
T Consensus       109 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          109 KLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            77774            4788888865 4433333332    3455566655543

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.39  E-value=0.002  Score=55.21  Aligned_cols=40  Identities=15%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHH-HHHHHHh--CCCeEEEEE
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIW-EKAATVL--KGVATVAAL   86 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~-~~~~~~~--~~~i~~~~v   86 (411)
                      ..++.++.|....|++|+++.+.+ .++.+.+  .+++.+...
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~   80 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFR   80 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEE
Confidence            356789999999999999999964 7787777  456666444

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.39  E-value=0.00033  Score=59.88  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=58.7

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHHhcCC
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQEYGI  100 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~~~~i  100 (411)
                      .+|+.|+++||+.|....+.+.++.++++. ++.++.|.++.                            +.++++.||+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            555666899999999999999999998875 57777777652                            1256777887


Q ss_pred             C------------cccEEEEEeC-CCCCcccCC----CCCcchhHHHHHHH
Q 015217          101 R------------GFPTIKVFVP-GKPPVDYQG----ARDVKPIAEFALQQ  134 (411)
Q Consensus       101 ~------------~~P~~~~~~~-g~~~~~~~g----~~~~~~l~~~~~~~  134 (411)
                      .            ..|+++++.. |+....+.+    .++.+++.+.+...
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            3            3689888865 443333322    34556666666543

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.38  E-value=0.0011  Score=56.76  Aligned_cols=85  Identities=18%  Similarity=0.155  Sum_probs=58.8

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------------cHhHHHh
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------------HQSLAQE   97 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------------~~~~~~~   97 (411)
                      .+|+.|+++||+.|....+.+.++.+++++ ++.++.|.++.                               +.++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            566677899999999999999999998875 57777776652                               1246677


Q ss_pred             cCCC------------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHHHH
Q 015217           98 YGIR------------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFALQQ  134 (411)
Q Consensus        98 ~~i~------------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~~~  134 (411)
                      ||+.            ..|++++++. |+....+.+.    ++.+++.+.+...
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l  167 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  167 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            7773            3689888865 4433343333    3456666666544

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.36  E-value=0.00057  Score=54.25  Aligned_cols=80  Identities=24%  Similarity=0.372  Sum_probs=58.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC--------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC--------------------------------------  218 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~--------------------------------------  218 (411)
                      +.+..++.|+.++|++|+.+.+.+.++     +++.+.....                                      
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~   87 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG   87 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence            456889999999999999999987654     3444443321                                      


Q ss_pred             ----C----CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          219 ----D----SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       219 ----~----~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                          .    .+..+++++||+++|++++ .++.    ...|..+.+.+.+.|.+..
T Consensus        88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~----~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR----TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC----EEESCCCTTHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE----EeeCCCCHHHHHHHHHHHH
Confidence                0    1335778899999999998 4332    4678888999999987764

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.34  E-value=0.00046  Score=51.76  Aligned_cols=66  Identities=18%  Similarity=0.331  Sum_probs=45.9

Q ss_pred             cchhHHHhcCCCeEEEEEEC-----CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEE
Q 015217           38 NNFKSKVLNANGVVLVEFYA-----PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKV  108 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  108 (411)
                      +.++ .++.+++  ++.|+.     +||++|++..+.|.+.      .+.+..+|++.+++    +.+..|...+|++  
T Consensus         6 ~~~~-~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--   74 (109)
T 1wik_A            6 SGLK-VLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--   74 (109)
T ss_dssp             CCHH-HHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHH-HHhccCC--EEEEEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--
Confidence            3455 4444444  445777     9999999999888764      36788888887654    4556788999985  


Q ss_pred             EeCCCC
Q 015217          109 FVPGKP  114 (411)
Q Consensus       109 ~~~g~~  114 (411)
                      |.+|+.
T Consensus        75 fi~g~~   80 (109)
T 1wik_A           75 YVRGDL   80 (109)
T ss_dssp             ECSSSE
T ss_pred             EECCEE
Confidence            446653

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=97.34  E-value=0.0012  Score=55.54  Aligned_cols=85  Identities=25%  Similarity=0.285  Sum_probs=62.0

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHH-HHHHHHh--CCCeEEEEEeccc---------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIW-EKAATVL--KGVATVAALDANE---------------------------------   90 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~-~~~~~~~--~~~i~~~~vd~~~---------------------------------   90 (411)
                      ..++.+|.|....|++|+++.+.+ ..+.+.+  .+++.|...+.--                                 
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~  107 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEK  107 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence            467899999999999999999987 5555566  3567775554310                                 


Q ss_pred             --------------------------------------------cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcch
Q 015217           91 --------------------------------------------HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP  126 (411)
Q Consensus        91 --------------------------------------------~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  126 (411)
                                                                  +...++++||.++|++++  +|+.   +.|..+.+.
T Consensus       108 ~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvv--nG~~---~~G~~~~e~  182 (202)
T 3gha_A          108 QPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYV--NDKV---IKNFADYDE  182 (202)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEE--TTEE---CSCTTCHHH
T ss_pred             CccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHH
Confidence                                                        004566789999999877  5642   668888888


Q ss_pred             hHHHHHHHHH
Q 015217          127 IAEFALQQIK  136 (411)
Q Consensus       127 l~~~~~~~~~  136 (411)
                      +.+.+.+.+.
T Consensus       183 l~~~i~~~~~  192 (202)
T 3gha_A          183 IKETIEKELK  192 (202)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888876654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.31  E-value=0.00061  Score=55.28  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=35.5

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS  220 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~  220 (411)
                      .++++|.|| +.||+.|....+.+.++.+.+ ..+.+..|+.+.
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~   85 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADL   85 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCC
Confidence            468899998 799999999999999999998 667777777554

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.29  E-value=0.0014  Score=54.78  Aligned_cols=42  Identities=26%  Similarity=0.483  Sum_probs=35.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC  218 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~  218 (411)
                      +.++.++.|++.||++|..+.+.+.++.+.+..++.|..+..
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            356889999999999999999999999999887777766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	411
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	3e-26
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	7e-22
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-23
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	5e-21
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	3e-23
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	6e-21
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	6e-21
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	1e-19
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-20
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	2e-18
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	1e-20
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	2e-19
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	2e-20
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	9e-18
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-19
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-18
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	2e-18
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	5e-18
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	5e-18
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	4e-17
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	1e-17
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	6e-16
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	4e-17
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	1e-14
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	2e-16
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	7e-14
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-16
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	2e-15
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	2e-15
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	4e-13
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	6e-15
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	6e-14
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	2e-13
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	1e-10
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	5e-13
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	8e-11
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	2e-12
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	3e-11
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	9e-12
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	2e-09
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-11
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	4e-07
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	6e-11
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	2e-10
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	8e-11
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-07
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	8e-11
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	1e-10
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	9e-11
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-09
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	1e-10
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	8e-09
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-10
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	1e-09
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	4e-10
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	5e-07
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	1e-09
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	4e-07
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	1e-09
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-08
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	6e-09
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	4e-08
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	2e-07
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	2e-04
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	7e-06
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	1e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	0.002
d1un2a_	195	c.47.1.13 (A:) Disulfide-bond formation facilitato	2e-05
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	2e-05
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	0.001
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	4e-05
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	0.002
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	0.002
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	0.002
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	0.003
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	0.003

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 3e-26
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHC-----KKLAPEWKKAANNLKGKVKLGHV 216
           ++ L++  F +++ KSK   +V+F   +         K+LA     + + L  +V +   
Sbjct: 6   ALPLDTVTFYKVIPKSK-FVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDY 64

Query: 217 DCDSEKSLMSKF--NVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQ 265
                  L  K+  + + +P   +F   D ++P+PY GA   GAI+ +   Q
Sbjct: 65  GDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.2 bits (218), Expect = 7e-22
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCG-----HCQALTPIWEKAATVLKGVATV 83
           +   + L    F  KV+  +  VLV+F   +         + L      +  +L     +
Sbjct: 3   TKGALPLDTVTFY-KVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGI 61

Query: 84  AALDANEHQSLAQEY--GIRGFPTIKVFVP--GKPPVDYQGARDVKPIAEFALQQIKAL 138
           +      +  L+++Y      +P   +F     + PV Y GA  V  I  +   Q   L
Sbjct: 62  SDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQGVYL 120

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--------GKVKLG 214
           ++L+  +F++ V +     +V+F        K     +   + +            V + 
Sbjct: 5   VDLDELSFEKTVERFP-YSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVK 61

Query: 215 HVDCDSEKSLMSKF--NVQGFPTILVF--GADKDSPIPYEGARTAGAIESFALEQL 266
                  K+L  ++  + + FP+I +F   AD+   +P     T   +++F     
Sbjct: 62  DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT 117

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 85.9 bits (212), Expect = 5e-21
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 16/112 (14%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--------GVATV 83
            V L   +F+ K +      +V+F        +     +   +                V
Sbjct: 4   CVDLDELSFE-KTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGV 60

Query: 84  AALDANEHQSLAQEYG--IRGFPTIKVFVPGKP---PVDYQGARDVKPIAEF 130
                 E+++L   Y    + FP+I +F         +       +  +  F
Sbjct: 61  KDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAF 112

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 91.4 bits (226), Expect = 3e-23
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL 139
           +++   A +YGIRG PT+ +F  G+      GA     + EF    + A L
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF----LDANL 107

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 85.2 bits (210), Expect = 6e-21
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S++ I L   +FD  VLK+    +V+F+A WCG CK +AP   + A+  +GK+ +  ++ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
           D       K+ ++G PT+L+F  + +      GA + G ++ F    L+ N+A
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 85.6 bits (211), Expect = 6e-21
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGH------CKKLAPEWKKAANNLKGK- 210
             +  I +N+ N+   V K  ++  + +  P           +      + AA  L+ K 
Sbjct: 9   GVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG 67

Query: 211 VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267
           V  G VD + + ++  K  +    +I VF   +D  I Y+G  +A  +  F L+ LE
Sbjct: 68  VGFGLVDSEKDAAVAKKLGLTEEDSIYVF--KEDEVIEYDGEFSADTLVEFLLDVLE 122

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 82.2 bits (202), Expect = 1e-19
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH------CQALTPIWEKAATVLKG 79
           Y     V+ +   N+K  V     V+ + ++ P           +    I E AA VL+ 
Sbjct: 7   YDGVDRVINVNAKNYK-NVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED 65

Query: 80  VA-TVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
                  +D+ +  ++A++ G+    +I         ++Y G      + EF L  ++
Sbjct: 66  KGVGFGLVDSEKDAAVAKKLGLTEEDSI-YVFKEDEVIEYDGEFSADTLVEFLLDVLE 122

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 84.9 bits (209), Expect = 1e-20
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALD 87
            PV  +   N+   VL+    VL+EFYAPWCGHC+AL P +E+   +           + 
Sbjct: 2   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 61

Query: 88  ANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIK 136
             +  +      I+GFPTIK++  G    PV Y G+R V+ + +F  +  K
Sbjct: 62  KVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 112

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 78.3 bits (192), Expect = 2e-18
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG--HVDCDS 220
             + + N++E+VL      ++EF+APWCGHCK LAP++++               +    
Sbjct: 5   TVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD 64

Query: 221 EKSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQLETNVA 271
             +      +QGFPTI ++    K  P+ Y G+RT   +  F  E  +   A
Sbjct: 65  ATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA 116

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 84.5 bits (208), Expect = 1e-20
 Identities = 28/102 (27%), Positives = 49/102 (48%)

Query: 29  SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
           S  V+ +T   F+S+VL A   VLV F+A WCG CQ ++P+   AA        V  L+ 
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
           + + +  ++Y + G P +++    +     +G      +  F
Sbjct: 61  DPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSF 102

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 81.0 bits (199), Expect = 2e-19
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC 218
           S   I +  + F+  VLK++   +V F+A WCG C+ ++P    AAN    ++K+  ++ 
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60

Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
           D   + + K+ V+G P + +    +      EG  +   + SF    L
Sbjct: 61  DPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHL 107

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (209), Expect = 2e-20
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 151 SSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK 210
           S +  ++  +   +L   N DE+V   K   +V ++APWCGHCK+LAP +++ A+     
Sbjct: 3   SQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANA 62

Query: 211 VKLGHVDC-DSEKSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQLET 268
                +   D  ++ +    ++G+PTI+++ G  K   + Y+G+R+  ++  F  E    
Sbjct: 63  TSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF 122

Query: 269 NVAPPEVTELTSQDVMEE 286
           +V    + E   +   EE
Sbjct: 123 DVDGKALYEEAQEKAAEE 140

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (189), Expect = 9e-18
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL-DA 88
           S V QL   N    V +    VLV +YAPWCGHC+ L P +++ A       +   +   
Sbjct: 12  SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 71

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEF 130
           +  ++  +   I G+PTI ++  GK    V YQG+R +  + +F
Sbjct: 72  DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDF 115

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 79.9 bits (196), Expect = 5e-19
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
           E+  +N   F  +VL+S    +V+F+APWCG C+ +AP   + A   K K+K   ++ D 
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
             ++ S++ ++  PTI+VF           GA     I     + L
Sbjct: 62  SPNVASEYGIRSIPTIMVFK-GGKKCETIIGAVPKATIVQTVEKYL 106

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 78.8 bits (193), Expect = 1e-18
 Identities = 35/100 (35%), Positives = 52/100 (52%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
               +  + FK+ VL ++  VLV+F+APWCG C+ + P+ ++ A   K       L+ +E
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
             ++A EYGIR  PTI VF  GK      GA     I + 
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQT 101

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 77.9 bits (191), Expect = 2e-18
 Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
           ++ L  +NF +  ++     +V+F+A WCG C+ +AP  ++ A     KV +  ++ D  
Sbjct: 2   TMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267
               S+F +   PT+ +     +      G +    +E+   + L+
Sbjct: 61  PETTSQFGIMSIPTL-ILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 77.1 bits (189), Expect = 5e-18
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
            + LT  NF+ + +  +  VLV+F+A WCG C+ + P+ E+ A       TVA L+ +E+
Sbjct: 2   TMTLTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLK 140
                ++GI   PT+ +F  G+P     G +  + +       +  +L+
Sbjct: 61  PETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQ----LADVLQ 105

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 5e-18
 Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 6/109 (5%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL---DA 88
           V+ L  +NF  + L A+  +LVEFYAPWCGHC+AL P + KAA  LK   +   L   DA
Sbjct: 9   VLVLRKSNFA-EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQI 135
            E   LAQ+YG+RG+PTIK F  G    P +Y   R+   I  +  ++ 
Sbjct: 68  TEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 4e-17
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA---NNLKGKVKLG 214
           + +  + L  SNF E  L +    +VEF+APWCGHCK LAPE+ KAA        +++L 
Sbjct: 5   EEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63

Query: 215 HVDCDSEKSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQL 266
            VD   E  L  ++ V+G+PTI  F   D  SP  Y   R A  I ++  ++ 
Sbjct: 64  KVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 75.5 bits (185), Expect = 1e-17
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           I  F +P C +C        +A      K+ +  +D   ++    ++ +   P I + G 
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGV 64

Query: 242 DKDSPIPYEGARTAGAIESFALEQLE 267
            +     + GA +   +     +++E
Sbjct: 65  VR-----FVGAPSREELFEAINDEME 85

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 70.5 bits (172), Expect = 6e-16
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 50  VVLVE-FYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108
           VV +E F +P C +C     + ++A         V  +D    +  A EYG+   P I +
Sbjct: 2   VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

Query: 109 FVPGKPPVDYQGARDVKPIAEFALQQIK 136
               +    + GA   + + E    +++
Sbjct: 62  NGVVR----FVGAPSREELFEAINDEME 85

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.9 bits (183), Expect = 4e-17
 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 4/118 (3%)

Query: 22  SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL-KGV 80
            +A+    S VV+L  ++F  + + ++ +VL EF+APWCGHC+ + P + KAA  L +  
Sbjct: 2   QEAVAPEDSAVVKLATDSFN-EYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 60

Query: 81  ATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIK 136
            T+A +D  E+Q L  E+ I GFP++K+F        +DY+G R  + I +F ++Q +
Sbjct: 61  ITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 45/107 (42%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL-KGKVKLGHVDCDSE 221
           ++L + +F+E  ++S DL + EFFAPWCGHCK +APE+ KAA  L +  + L  +DC   
Sbjct: 13  VKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN 71

Query: 222 KSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQLE 267
           + L  + N+ GFP++ +F  +D ++ I YEG RTA AI  F ++Q +
Sbjct: 72  QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-TVAALDAN 89
           PV   T +++  +    +GV+L+               +  +           VA  D  
Sbjct: 15  PVEASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 72

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALL 139
           + +++   + +R FP   VF  GK      G      +       +++++
Sbjct: 73  QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTL----MRSIV 118

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 65.4 bits (159), Expect = 7e-14
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 164 ELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE 221
            + +S  D+ + +  D + ++                  +          ++   D +  
Sbjct: 15  PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS 74

Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
           +++  +FNV+ FP  LVF  D        G      + + 
Sbjct: 75  EAIGDRFNVRRFPATLVFT-DGKLRGALSGIHPWAELLTL 113

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 71.9 bits (175), Expect = 3e-16
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
            ++N S++ E VL+S+   +V+F+APWCG CK +AP   + A    GK+ +  ++ D   
Sbjct: 2   QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
            + +++N++  PT+L F  + +      GA     +     + L
Sbjct: 62  GIATQYNIRSIPTVLFFK-NGERKESIIGAVPKSTLTDSIEKYL 104

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 69.6 bits (169), Expect = 2e-15
 Identities = 29/99 (29%), Positives = 50/99 (50%)

Query: 32  VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
           V  +  +++K  VL +   V+V+F+APWCG C+ + P+ ++ A    G   V  L+ +E 
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 92  QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
             +A +Y IR  PT+  F  G+      GA     + + 
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDS 99

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 46  NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA-TVAALDANEHQSLAQEYGIRGFP 104
             +GVVL+               +  +           VA  D  + +++   +G+  FP
Sbjct: 34  APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFP 93

Query: 105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLK 140
              VF  G       G      +       ++ L++
Sbjct: 94  ATLVFTGGNYRGVLNGIHPWAELINL----MRGLVE 125

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 63.9 bits (155), Expect = 4e-13
 Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 164 ELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKV-KLGHVDCDSE 221
            ++ S  D+ + ++ D + ++                  +          ++   D +  
Sbjct: 21  PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS 80

Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267
           +++  +F V  FP  LVF    +      G      + +     +E
Sbjct: 81  EAIGDRFGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE 125

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 68.3 bits (166), Expect = 6e-15
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 30  SPVVQLTPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
             V ++  + F   V  A +  V+++ +  WCG C+A+ P +EK A     V  +     
Sbjct: 6   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN 65

Query: 89  NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137
            E+++LA+E GIR  PT K+        +  GA+  K +   A+Q  ++
Sbjct: 66  QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLE--AIQAARS 112

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 65.6 bits (159), Expect = 6e-14
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 163 IELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
            E+N   F  +V  + D   +++ F  WCG CK +AP+++K A      + L        
Sbjct: 9   TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN 68

Query: 222 KSLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIE 259
           K+L  +  ++  PT  +    +         GA+    +E
Sbjct: 69  KTLAKELGIRVVPTFKILKENSVVGE---VTGAKYDKLLE 105

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 36  TPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           +  +F+ ++  A   + +V+F    CG C  + P +   +        +   D ++ Q  
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEV-DVHQCQGT 66

Query: 95  AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
           A    I   PT + F        YQGA D   + E   Q ++
Sbjct: 67  AATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQHLE 107

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           +  +F   +  +   L +V+F    CG C ++AP +   +N    +     VD    +  
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNK-YPQAVFLEVDVHQCQGT 66

Query: 225 MSKFNVQGFPTILVF----------GADKD 244
            +  N+   PT   F          GAD  
Sbjct: 67  AATNNISATPTFQFFRNKVRIDQYQGADAV 96

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 63.0 bits (152), Expect = 5e-13
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKK----AANNLKGKVKLGHVDCD 219
            L       +    +D+ I+ F  P C +C        K         KGK+    V+  
Sbjct: 1   NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI 60

Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
                  ++NV   P I++    +D  + +EGA          L  L
Sbjct: 61  EYPEWADQYNVMAVPKIVIQVNGED-RVEFEGAYPEKMFLEKLLSAL 106

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 56.5 bits (135), Expect = 8e-11
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 35  LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK----AATVLKGVATVAALDANE 90
           L     ++       V ++ F  P C +C     +  K         KG      ++A E
Sbjct: 2   LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 61

Query: 91  HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
           +   A +Y +   P I + V G+  V+++GA   K   E  L  +
Sbjct: 62  YPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 106

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 44  VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF 103
           +   + VV++ F   W   C  +  +    A  +K  A +  +D  E     + Y +   
Sbjct: 18  LSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP 77

Query: 104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLK 140
            T+  F   K  +   G  +      +A++  + ++ 
Sbjct: 78  CTVMFFFRNKHIMIDLGTGN-NNKINWAMEDKQEMVD 113

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           N    D+ +L  +D + ++ F   W   C K+       A  +K    +  VD       
Sbjct: 9   NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDF 68

Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPE 274
              + +    T++ F   ++  I  +         ++A+E  +  V   E
Sbjct: 69  NKMYELYDPCTVMFF--FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIE 116

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 9e-12
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 36  TPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
           +   F+  +  A + +V+V+F A WCG C+ + P +   +     V     +D ++ Q +
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQDV 65

Query: 95  AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
           A E  ++  PT + F  G+   ++ GA           ++++A + E
Sbjct: 66  ASECEVKCMPTFQFFKKGQKVGEFSGANK---------EKLEATINE 103

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           + + F E +  + D L +V+F A WCG CK + P +   +      V    VD D  + +
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDV 65

Query: 225 MSKFNVQGFPTILVF 239
            S+  V+  PT   F
Sbjct: 66  ASECEVKCMPTFQFF 80

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 30  SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
           S V   +   F+  +++ + + +  F A WCG C+ +    EK A         A +DA+
Sbjct: 9   SVVDVYSVEQFR-NIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE-FPTVKFAKVDAD 66

Query: 90  EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
            +  +  +  +   PT  +   GK      GA           Q+++ ++K+
Sbjct: 67  NNSEIVSKCRVLQLPTFIIARSGKMLGHVIGAN-----PGMLRQKLRDIIKD 113

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           +++ S      ++    L +  F A WCG CK +    +K A      VK   VD D+  
Sbjct: 11  VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE-FPTVKFAKVDADNNS 69

Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267
            ++SK  V   PT ++  + K            GA      ++L 
Sbjct: 70  EIVSKCRVLQLPTFIIARSGK------MLGHVIGANPGMLRQKLR 108

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 56.5 bits (135), Expect = 6e-11
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           I  F +P C HC       ++ AN +   V++ +++         ++ +   PTI++ G 
Sbjct: 6   IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65

Query: 242 DKDSPIPYEGARTAGAIESFALEQL 266
            +     + GA T  A+     ++L
Sbjct: 66  VE-----FIGAPTKEALVEAIKKRL 85

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 48  NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107
           + V +  F +P C HC A   + E+ A  +     V  ++  E+   A EYGI   PTI 
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 108 VFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
           +    +    + GA           + +   +K+RL
Sbjct: 62  INGDVE----FIGAPTK--------EALVEAIKKRL 85

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 11/119 (9%)

Query: 27  GSSSPVVQL-TPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
            +++ V Q+    +   ++  A+G +V+++F+A WCG C+ ++P   + +T       V 
Sbjct: 2   AAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL 61

Query: 85  ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERL 143
            +D +E + +A EY I   PT      G    ++ GA           ++++ ++K  +
Sbjct: 62  KVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANA---------KRLEDVIKANI 111

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 166 NSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
           + ++ D  + K+   L +++FFA WCG CK ++P+  + +      V +  VD D  + +
Sbjct: 12  DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI 71

Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
             ++N+   PT +    +      + GA     +E      +
Sbjct: 72  AMEYNISSMPTFVFL-KNGVKVEEFAGANAK-RLEDVIKANI 111

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.9 bits (136), Expect = 8e-11
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 4/102 (3%)

Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--- 89
           +++T      + L+             C +C+             K        +     
Sbjct: 11  LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70

Query: 90  -EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
            + Q+    YGI   P       G+  V    +   + I +F
Sbjct: 71  NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDF 112

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 3/104 (2%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD--- 217
           + +E+ +    +  L  K+          C +C+K A          K  +   + +   
Sbjct: 9   KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS 68

Query: 218 CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
             ++                V   D    +  + + +A  I+ F
Sbjct: 69  QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDF 112

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 56.8 bits (136), Expect = 9e-11
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 29  SSPVVQLTPNNFKSKVLNA---NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAA 85
            S +V  +   + +++      +  ++V+F A WCG C+ + P++E  +    G      
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

Query: 86  LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
           +D +   ++A+  GI   PT  V+  G    D  GA            ++KAL+ +
Sbjct: 62  VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQ---------DKLKALVAK 108

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 166 NSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           + + +D  + K K+     +V+F A WCG CK +AP ++  +N+  GKV    VD D+  
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68

Query: 223 SLMSKFNVQGFPTILVF 239
           ++     +   PT  V+
Sbjct: 69  AVAEAAGITAMPTFHVY 85

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 33  VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           +  +   F   +++ N +V+V+F+A WCG C+ + P +E+ +     +     +D +E  
Sbjct: 4   IVTSQAEFD-SIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM-VFIKVDVDEVS 61

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
            + ++  I   PT KV+  G       GA D           +K L+++
Sbjct: 62  EVTEKENITSMPTFKVYKNGSSVDTLLGAND---------SALKQLIEK 101

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
           I  + + FD  ++   +L IV+FFA WCG CK++AP +++ +      V    VD D   
Sbjct: 4   IVTSQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEVS 61

Query: 223 SLMSKFNVQGFPTILVF 239
            +  K N+   PT  V+
Sbjct: 62  EVTEKENITSMPTFKVY 78

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 15/107 (14%)

Query: 31  PVVQLTPNNFKSKVLNANG-VVLVEFYA-------PWCGHCQALTPIWEKAATVLKGVAT 82
            V       F   V   NG  +   F          WC  C    P+  +    +     
Sbjct: 3   EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 62

Query: 83  VAALDANE-------HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
                  E       +    +   +   PT+  +   +  V+ +  +
Sbjct: 63  FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQ 109

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 15/94 (15%)

Query: 165 LNSSNFDELVLKSKDLWIVEFF--------APWCGHCKKLAPEWKKAANNLKGKVKLGHV 216
                F   V +     I  +F          WC  C +  P  ++   ++       + 
Sbjct: 7   SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYC 66

Query: 217 DCDSEKSLM-------SKFNVQGFPTILVFGADK 243
               +               V   PT+L +G  +
Sbjct: 67  QVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQ 100

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 26  YGSSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
           YG    +   T   F   +        ++V  Y      C AL    E  A     V   
Sbjct: 98  YGFVYELE--TGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMV-KF 154

Query: 84  AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
             + A  +      +     PT+ V+  G+   ++    +     +F    +++ L E
Sbjct: 155 CKIRA-SNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAE-DFFAADVESFLNE 210

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 129 EFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNFDELVLKSKD--LWIVEF 185
           E  L++ +    + +  K                 EL +   F E + K +     +V  
Sbjct: 74  EGCLRKYRRQCMQDMHQKL------SFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNI 127

Query: 186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
           +      C  L    +  A       K   +   +      +F+    PT+LV+
Sbjct: 128 YEDGVRGCDALNSSLECLAAEYPMV-KFCKIRASNTG-AGDRFSSDVLPTLLVY 179

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 36  TPNNFKSKVLNA---NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           T   +  ++  A     +V+V+F A WCG C+ + P +   A           +D +E +
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVLFLKVDTDELK 71

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLS 144
           S+A ++ I+  PT      GK      GA+           ++++ + + L+
Sbjct: 72  SVASDWAIQAMPTFMFLKEGKILDKVVGAKK---------DELQSTIAKHLA 114

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 157 SDSNESIELNS-SNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVK 212
           S+  + I  ++   ++E + K+ +   L +V+F A WCG C+ +AP +   A  L   + 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 213 LGHVDCDSEKSLMSKFNVQGFPTILVF----------GADKD 244
              VD D  KS+ S + +Q  PT +            GA KD
Sbjct: 63  -LKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKD 103

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 36  TPNNFKS---KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
           T + +K    K   +  +++V+F A WC  C+ + PI+ + A     V T   +D +E +
Sbjct: 11  TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-TFLKVDVDELK 69

Query: 93  SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137
           ++A+E+ +   PT      GK  VD     D   +     +   A
Sbjct: 70  AVAEEWNVEAMPTFIFLKDGK-LVDKTVGADKDGLPTLVAKHATA 113

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
            +++    +F++    S+ L +V+F A WC  CK +AP + + A           VD D 
Sbjct: 10  HTVDTWKEHFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-TFLKVDVDE 67

Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
            K++  ++NV+  PT +         +          + + 
Sbjct: 68  LKAVAEEWNVEAMPTFIFL--KDGKLVDKTVGADKDGLPTL 106

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.9 bits (121), Expect = 6e-09
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 39  NFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE 97
           +   ++ + +G      +Y+  C +C  +       A  L       A+D    Q+   E
Sbjct: 5   SLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAV-LNPRIKHTAIDGGTFQNEITE 63

Query: 98  YGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
             + G P   VFV GK     QG   +  I   
Sbjct: 64  RNVMGVPA--VFVNGKE--FGQGRMTLTEIVAK 92

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237
            D     +++  C +C  +          L  ++K   +D  + ++ +++ NV G P + 
Sbjct: 15  GDFEFETYYSLSCHNCPDVVQALNL-MAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVF 73

Query: 238 VFGADKDSPIPYEGARTAGAIESFALEQLET 268
           V G +       +G  T   I    + +++T
Sbjct: 74  VNGKEF-----GQGRMTLTEI----VAKVDT 95

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 16/99 (16%)

Query: 51  VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110
           VL  F    C  C     + +              +   E+ +  + Y           +
Sbjct: 18  VLTLFTKAPCPLCDEAKEVLQPYKDRFIL--QEVDITLPENSTWYERYKFD---IPVFHL 72

Query: 111 PGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATG 149
            G+  + ++              +++  L  +LSG ++G
Sbjct: 73  NGQFLMMHR----------VNTSKLEKQL-RKLSGPSSG 100

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 8/86 (9%), Positives = 20/86 (23%), Gaps = 9/86 (10%)

Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
           +  F    C  C +     +   +    +     +      +   ++     P   + G 
Sbjct: 19  LTLFTKAPCPLCDEAKEVLQPYKDRFILQEV--DITLPENSTWYERYKFD-IPVFHLNGQ 75

Query: 242 DKDSPIPYEGARTAGAIESFALEQLE 267
                           +E   L +L 
Sbjct: 76  FLM-----MHRVNTSKLEKQ-LRKLS 95

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 29/133 (21%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD--- 217
           E   LN     E ++  K   ++ F++  C  CK+  P+  +  +  + ++ +  V    
Sbjct: 13  EKAWLNGEVTREQLIGEK-PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPR 71

Query: 218 ------------------------CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253
                                    DS+ +L   F  +  P   VF           G  
Sbjct: 72  SEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGS 131

Query: 254 TAGAIESFALEQL 266
               +E   + ++
Sbjct: 132 GMKMLEKR-VNRV 143

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 4/129 (3%)

Query: 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216
               ES  L S+  + L    +   ++     WC  C+        A       ++L  +
Sbjct: 33  RQKLESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAII 91

Query: 217 DCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVT 276
                +  + +        I +     +    +             L+     +A  +  
Sbjct: 92  SKGRAEDDLRQRLALERIAIPLVLVLDE---EFNLLGRFVERPQAVLDGGPQALAAYKAG 148

Query: 277 ELTSQDVME 285
           +     + +
Sbjct: 149 DYLEHAIGD 157

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 3/99 (3%)

Query: 50  VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
             L+     WC  CQ      + A  +   +  +A +     +   ++        I + 
Sbjct: 56  YRLLVAGEMWCPDCQINLAALDFAQRLQPNI-ELAIISKGRAEDDLRQRLALERIAIPLV 114

Query: 110 VPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKAT 148
           +      ++          +  L      L    +G   
Sbjct: 115 LVLDE--EFNLLGRFVERPQAVLDGGPQALAAYKAGDYL 151

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 19/140 (13%)

Query: 71  EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR--DVKPIA 128
           E+           + +   E    A +  +RG P +  FV GK  ++ QG    ++    
Sbjct: 21  EEYDAAWNSFVVKSLVAQQE--KAAADVQLRGVPAM--FVNGKYQLNPQGMDTSNMDVFV 76

Query: 129 EFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAP 188
           +     +K L +++  G        K       ++E   +   +         ++EFF+ 
Sbjct: 77  QQYADTVKYLSEKKGGGTGAQYEDGKQY----TTLEKPVAGAPQ---------VLEFFSF 123

Query: 189 WCGHCKKLAPEWKKAANNLK 208
           +C HC +       + N  K
Sbjct: 124 FCPHCYQFEEVLHISDNVKK 143

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 21/125 (16%)

Query: 38  NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWE--------------------KAATVL 77
             +++ VL     VL+  +A WC   +A                            + + 
Sbjct: 10  QFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 69

Query: 78  KGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVD-YQGARDVKPIAEFALQQIK 136
           +     A    +    L  + G+ G P   +          + G  + +   E      +
Sbjct: 70  ELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE 129

Query: 137 ALLKE 141
              KE
Sbjct: 130 KYSKE 134

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW 200
           ES++     +   VL      ++  +A WC   +      
Sbjct: 3   ESLDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYL 42

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 18/117 (15%)

Query: 36  TPNNFKSKVLNANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA------ALDA 88
           T +     ++ A G  V+++ YA WC  C+           V K +A           + 
Sbjct: 9   TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 68

Query: 89  NEHQSLAQEYGIRGFPTIKVFVP-GKPPVDY--QGARDVKPIAEFALQQIKALLKER 142
            +  +L +   + G PTI  F   G+        G  D +  +          L++R
Sbjct: 69  AQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAH--------LRDR 117

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 27  GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA--TVA 84
           G    +   T  + K +   +   ++V  +  WCG C+AL P + ++  + +      + 
Sbjct: 4   GFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMV 63

Query: 85  ALDANEHQSLAQEY-GIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFA--LQQIKALLK 140
            L+  E              P I    P GK   +            F    +Q+   +K
Sbjct: 64  NLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK 123

Query: 141 ---ERLSGKA 147
              ERL+G A
Sbjct: 124 EAQERLTGDA 133

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 16/112 (14%)

Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS-------- 223
           +    S    +V     WCG CK L P++ ++    +       V+ + E+         
Sbjct: 19  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 78

Query: 224 ------LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF--ALEQLE 267
                  +   +  G     +   + +    Y        ++    A E+L 
Sbjct: 79  DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLT 130

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
           E+    + + +  S  + +   FA      K+L+ + K  A   +G +  G +D  +  +
Sbjct: 10  EIGPETYSDYM--SAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGA 67

Query: 224 LMSKFNVQG--FPTILVFGADKDSPIPY--EGARTAGAIESFALEQLETNVAPPEVTELT 279
                N++   FP   +    K+   P+  E   T  AI++F  + +   + P     + 
Sbjct: 68  HAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEP----SIK 123

Query: 280 SQDVMEEKCG 289
           S+ + E++ G
Sbjct: 124 SEPIPEKQEG 133

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 31/137 (22%)

Query: 31  PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV------- 83
             ++   N   S  L  +   L++F+A WC  C +     EK A   K  +         
Sbjct: 6   STLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASP 65

Query: 84  ----------------------AALDANEHQSLAQEYGIRGFPTIKVFVP-GKPPVDYQG 120
                                   +  +   ++AQ   I  +P+  +    G      +G
Sbjct: 66  GFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKG 125

Query: 121 ARDVKPIAEFALQQIKA 137
           + +        ++   A
Sbjct: 126 SINEAQALAL-IRDPNA 141

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 30/127 (23%)

Query: 173 LVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHV-------------- 216
           + LK     +++F+A WC  C     + +K A +        +                 
Sbjct: 18  VYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQ 77

Query: 217 -------------DCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263
                          D+  ++    N+  +P+  + G D D     +G+       +  +
Sbjct: 78  KWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALAL-I 136

Query: 264 EQLETNV 270
                ++
Sbjct: 137 RDPNADL 143

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 27/111 (24%)

Query: 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV-- 216
           S   ++  +++     L  K      F A WC   +   P+          K     +  
Sbjct: 10  STNVLKGAAADIALPSLAGK-TVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68

Query: 217 ------------------------DCDSEKSLMSKFNVQGFPTILVFGADK 243
                                   D    + L + F+V+  PT++   AD 
Sbjct: 69  SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADS 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.89
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.89
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.88
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.87
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.87
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.83
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.83
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.83
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.82
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.82
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.82
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.81
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.8
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.79
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.79
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.79
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.79
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.79
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.79
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.79
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.78
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.78
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.78
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.77
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.76
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.75
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.75
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.74
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.73
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.73
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.72
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.72
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.72
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.71
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.7
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.69
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.69
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.69
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.69
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.68
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.67
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.67
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.67
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.66
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.65
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.63
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.62
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.6
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.59
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.59
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.58
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.57
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.56
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.56
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.55
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.49
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.46
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.43
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.43
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.31
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.29
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.27
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.27
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.26
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.25
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.23
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.22
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.21
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.2
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.17
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.17
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.15
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.13
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.1
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.02
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.99
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.95
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.93
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.93
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.9
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.86
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.86
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.84
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.82
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.81
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.76
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.76
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.75
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.75
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.75
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.71
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.61
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.61
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.61
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.57
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.43
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.24
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.24
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.2
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.12
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.1
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.07
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.07
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.05
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.91
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.87
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.87
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.86
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.82
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.82
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.79
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.71
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.65
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.57
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.57
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.53
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.46
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.41
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.33
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.32
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.24
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.24
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.2
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.2
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.18
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.15
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.15
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	97.12
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.11
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.08
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.07
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.05
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.04
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.0
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	96.97
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.95
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.85
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.79
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.75
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	96.61
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	96.61
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.61
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	96.59
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.58
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.58
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.54
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	96.51
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.49
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.48
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.36
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.34
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.25
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.21
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.21
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.18
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.07
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.04
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.88
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	95.8
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	95.73
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	95.7
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	95.63
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	95.56
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	95.55
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.42
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	95.25
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	94.79
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	94.45
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	94.32
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	94.21
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	93.95
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	93.7
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	93.55
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	93.19
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	93.03
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	92.67
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	92.4
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.69
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	91.26
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	91.07
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	90.54
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	90.24
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	89.54
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	87.49
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	83.87

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.89  E-value=1.6e-23  Score=158.88  Aligned_cols=106  Identities=25%  Similarity=0.499  Sum_probs=100.1

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ..|.++++++|++.+.+++++++|.||++||++|+++.|.|++++..+.+.+.++.+|+++++++|++|+|+++||+++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEE
Confidence            45889999999977778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|+.+.++.|.++.+.|.+|+.+++
T Consensus        82 ~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          82 KGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            99988889999999999999998875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.1e-23  Score=157.28  Aligned_cols=107  Identities=36%  Similarity=0.707  Sum_probs=100.7

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      +..+++|++++|++.+...+++++|+||++||++|+.+.|.+.+++..+.+++.++.+|+++++.+|.+|+|.++||+++
T Consensus         1 s~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_           1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             CTTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred             CCCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEE
Confidence            35688999999997778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |++|+.+.++.|.++.+.|.+|+.+++
T Consensus        81 ~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          81 FKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999988899999999999999998875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.88  E-value=4e-23  Score=155.49  Aligned_cols=103  Identities=28%  Similarity=0.558  Sum_probs=97.5

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +.++++++|++.+..++++++|.||++||++|+.+.|.+.++++.+.+++.++.+|+++++++|++|+|+++||+++|++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~   80 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   80 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEc
Confidence            57899999997777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+.+.++.|..+.+.|.+|+.++
T Consensus        81 G~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          81 GERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHh
Confidence            98889999999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.87  E-value=1.2e-22  Score=153.57  Aligned_cols=104  Identities=34%  Similarity=0.585  Sum_probs=97.8

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      +..+++++|++.+.+++++++|.||++||++|+.+.|.+.+++..+.+++.++.|||+.++++|++|+|+++|++++|++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   82 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence            56789999997778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCcchhHHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |+.+.++.|..+.+.|.+++.+++
T Consensus        83 G~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          83 GKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHhh
Confidence            988999999999999999998764

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.87  E-value=7.9e-23  Score=154.07  Aligned_cols=102  Identities=28%  Similarity=0.577  Sum_probs=95.7

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  111 (411)
                      .+.|++++|+ .++.++++++|.||++||++|+.+.|.+.+++..+++++.|+.+||++++.+|++|+|.++|++++|++
T Consensus         2 ~i~lt~~~f~-~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~   80 (105)
T d1nw2a_           2 TMTLTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHH-HHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred             EEEECHHHHH-HHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEEC
Confidence            4689999999 677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCcchhHHHHHHH
Q 015217          112 GKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       112 g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |+.+.++.|..+.+.|.+++.+.
T Consensus        81 G~~~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          81 GEPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             TEEEEEEESCCCHHHHHHHTTTT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHH
Confidence            98888999999999998888654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.1e-22  Score=152.53  Aligned_cols=110  Identities=38%  Similarity=0.767  Sum_probs=99.0

Q ss_pred             cccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCc
Q 015217           24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRG  102 (411)
Q Consensus        24 ~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~  102 (411)
                      +....++.+++|+.++|+ .++.+++.++|.||++||++|+++.|.|+++++.+.+ .+.++.|||+++.++|.+|+|.+
T Consensus         4 a~~~~~s~v~~lt~~~f~-~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   82 (119)
T d2b5ea4           4 AVAPEDSAVVKLATDSFN-EYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPG   82 (119)
T ss_dssp             SSCCTTSSCEECCTTTHH-HHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCCCCCccEEcCHHHHH-HHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhcccc
Confidence            345566789999999999 5677889999999999999999999999999999875 69999999999999999999999


Q ss_pred             ccEEEEEeCCCC--CcccCCCCCcchhHHHHHHH
Q 015217          103 FPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       103 ~P~~~~~~~g~~--~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|++++|++|+.  ...|.|.++.+.|++|+.+.
T Consensus        83 ~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          83 FPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ  116 (119)
T ss_dssp             SSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHH
T ss_pred             CCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHh
Confidence            999999998865  34689999999999999875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.83  E-value=1.5e-20  Score=142.17  Aligned_cols=106  Identities=25%  Similarity=0.503  Sum_probs=98.1

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..|.++|+++|.+.+.+.+++++|.||++||++|+.+.+.|.+++..+.+.+.|+.||++.++.++++|+|+++|++++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEE
Confidence            35899999999988878888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ...+|.|..+.++|.+||.+++
T Consensus        82 ~~g~-~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          82 KGEQ-ILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCCCCHHHHHHHHHHhc
Confidence            8654 4678999999999999999875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.2e-21  Score=149.91  Aligned_cols=106  Identities=44%  Similarity=0.826  Sum_probs=96.1

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccE
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ...|..+++++|+ .++.++++++|.||++||++|+.+.|.|.++++.+.+   ++.++.|||++++.+|.+|+|.++||
T Consensus         6 ~~~V~~l~~~~f~-~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFA-EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHH-HHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHH-HHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            4568899999999 6778899999999999999999999999999999864   58999999999999999999999999


Q ss_pred             EEEEeCCCC--CcccCCCCCcchhHHHHHHHH
Q 015217          106 IKVFVPGKP--PVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       106 ~~~~~~g~~--~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++|.+|+.  ..+|.|.++.+.|.+|+.+.+
T Consensus        85 ~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~  116 (120)
T d1meka_          85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             EEEEECCeEeeeEEecCCCCHHHHHHHHHHhh
Confidence            999998865  467899999999999998753

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=2.2e-20  Score=144.84  Aligned_cols=108  Identities=22%  Similarity=0.362  Sum_probs=92.8

Q ss_pred             cCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhh------hhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhc
Q 015217           26 YGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHC------QALTPIWEKAATVLKG-VATVAALDANEHQSLAQEY   98 (411)
Q Consensus        26 ~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C------~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~   98 (411)
                      +.....|++|++++|+ .++.+++.++|+||+|||++|      +.+.+.++.+++.+.+ .+.++.|||++++++|++|
T Consensus         7 ~d~~~~V~~L~~~nf~-~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~   85 (124)
T d1a8ya1           7 YDGVDRVINVNAKNYK-NVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL   85 (124)
T ss_dssp             CCCCCCCEECCTTTHH-HHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTT
T ss_pred             cCCCCccEECCHHHHH-HHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcc
Confidence            4566789999999999 566778899999999999974      4445556666666655 5999999999999999999


Q ss_pred             CCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217           99 GIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus        99 ~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+++||+++|.+|+ ...|.|.++.+.|++|+.+.+
T Consensus        86 ~I~~yPTi~~f~~g~-~~~y~G~r~~~~l~~fi~~~l  121 (124)
T d1a8ya1          86 GLTEEDSIYVFKEDE-VIEYDGEFSADTLVEFLLDVL  121 (124)
T ss_dssp             TCCSTTCEEEEESSS-EEECCSCCSHHHHHHHHHHHH
T ss_pred             ccccCCcEEEeccCc-cEEeeCCCCHHHHHHHHHHhc
Confidence            999999999999886 578999999999999999876

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.82  E-value=3.4e-20  Score=139.17  Aligned_cols=104  Identities=28%  Similarity=0.560  Sum_probs=96.5

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      |.++++.+|.+.+.+++++++|.||++||++|+.+.|.+.++++.+.+++.++.++++.++.++++|+|+++||+++|++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~   80 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   80 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEc
Confidence            57899999999888888899999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |. ...++.|..+.+.|.+|+.+++
T Consensus        81 G~-~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          81 GE-RKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             TE-EEEEEEECCCHHHHHHHHHHHC
T ss_pred             Ce-EEEEEeCCCCHHHHHHHHHHhC
Confidence            54 4678999999999999998874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5.7e-20  Score=138.95  Aligned_cols=106  Identities=30%  Similarity=0.630  Sum_probs=98.2

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      ..+.+||+++|.+.+.+.+++++|.||++||++|+.+.+.+.+++..+..++.++.+|++.++.++++|+|.++||+++|
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~   81 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEE
Confidence            45899999999998878889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|. ...+|.|..+.+.|.+||.+++
T Consensus        82 ~~G~-~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          82 KNGE-VAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCCCCHHHHHHHHHHhc
Confidence            8764 4678999999999999999876

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.82  E-value=2.9e-20  Score=141.09  Aligned_cols=104  Identities=20%  Similarity=0.497  Sum_probs=92.0

Q ss_pred             CcEEe-CccchhHHHh---cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           31 PVVQL-TPNNFKSKVL---NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        31 ~~~~l-~~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      .+..+ +.++|++.+.   .++++++|+||++||++|+.+.|.|+++++.+++++.|+.||++++++++++|+|+++||+
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   82 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCEE
Confidence            45666 5677775553   3678999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|++|+.+.++.| .+.+.|.+|+.++.
T Consensus        83 ~~~~~G~~v~~~~G-~~~~~l~~~i~k~~  110 (112)
T d1ep7a_          83 HVYKDGVKADDLVG-ASQDKLKALVAKHA  110 (112)
T ss_dssp             EEEETTEEEEEEES-CCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeC-cCHHHHHHHHHHHh
Confidence            99999988889988 48888999988764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.9e-19  Score=138.32  Aligned_cols=108  Identities=41%  Similarity=0.858  Sum_probs=97.1

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTI  236 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i  236 (411)
                      ..+.+++|+.++|.+. .++++.++|.||++||++|+.+.+.|.++++.+.. .+.|+.|||+.+..++++|+|.++|++
T Consensus         8 ~~s~v~~lt~~~f~~~-i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti   86 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEY-IQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSL   86 (119)
T ss_dssp             TTSSCEECCTTTHHHH-HTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEcCHHHHHHH-HhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeE
Confidence            4568999999999986 46778999999999999999999999999999975 599999999999999999999999999


Q ss_pred             EEEcCCC-CCcccccCCCCHHHHHHHHHHHh
Q 015217          237 LVFGADK-DSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       237 ~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|++|. .....|.|..+.++|.+|+.++.
T Consensus        87 ~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          87 KIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             EEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            9997654 33567999999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.80  E-value=1.2e-19  Score=136.86  Aligned_cols=104  Identities=30%  Similarity=0.528  Sum_probs=96.5

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      +..+++++|.+.+.+++++++|.||++||++|+.+.|.+.+++..+.+++.++.||++.++.++++|+|+++|++++|++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   82 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence            56789999999888888899999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHHh
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |. ...++.|..+.+.|.+||.+++
T Consensus        83 G~-~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          83 GK-KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SS-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             Ce-EEEEEeCCCCHHHHHHHHHHhh
Confidence            55 4778999999999999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=1.4e-19  Score=137.37  Aligned_cols=104  Identities=23%  Similarity=0.517  Sum_probs=90.0

Q ss_pred             CCcEEeCc-cchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQLTP-NNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l~~-~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      +.+.++.+ ++|+..+. .++++++|.||++||++|+.+.|.+++++..+++.+.++.+|++++++++++|+|.++|+++
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~   84 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV   84 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEE
Confidence            44666654 67885554 46789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          108 VFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|++|+.+.++.|. +.+.|.+++.++
T Consensus        85 ~~~~G~~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          85 FLKNGVKVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             EEETTEEEEEEESC-CHHHHHHHHHHT
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHhc
Confidence            99999888899986 456787777654

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=8.4e-20  Score=144.81  Aligned_cols=106  Identities=34%  Similarity=0.626  Sum_probs=91.6

Q ss_pred             CCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcc
Q 015217           27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGF  103 (411)
Q Consensus        27 ~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~  103 (411)
                      ..+..|..|++++|++.+...+++|+|+||++||++|+++.|.|.++++.+.+   .+.++.+|++  ..+|.+|+|.++
T Consensus         9 ~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~   86 (140)
T d2b5ea1           9 NQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGY   86 (140)
T ss_dssp             CCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSS
T ss_pred             cCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccC
Confidence            45677999999999977777788999999999999999999999999998864   4666666665  468999999999


Q ss_pred             cEEEEEeCCCC--CcccCCCCCcchhHHHHHHH
Q 015217          104 PTIKVFVPGKP--PVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       104 P~~~~~~~g~~--~~~~~g~~~~~~l~~~~~~~  134 (411)
                      |++++|++|+.  ...|.|.++.+.|.+|+.+.
T Consensus        87 Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          87 PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             SEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred             CeEEEEECCEEcceeEeCCCCCHHHHHHHHHHc
Confidence            99999998865  45789999999999999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.4e-19  Score=133.66  Aligned_cols=102  Identities=23%  Similarity=0.367  Sum_probs=89.7

Q ss_pred             cEEe-CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           32 VVQL-TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        32 ~~~l-~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      +..+ +.++|++.+. .++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++++++++++|+|.++|++++|
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~   81 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchhhhhhcCceeceEEEEE
Confidence            4444 5678985554 3477999999999999999999999999999875 78999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|+.+.++.|. +.+.|.+++.+++
T Consensus        82 ~~G~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          82 RNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHHhh
Confidence            999988999994 8888988888775

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.79  E-value=2.2e-19  Score=134.87  Aligned_cols=102  Identities=23%  Similarity=0.517  Sum_probs=93.2

Q ss_pred             cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217          162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA  241 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~  241 (411)
                      .+.||+++|.+. .+++++++|.||++||++|+.+.+.+.+++..+.+++.|+.||++.++.++++|+|.++|++++|++
T Consensus         2 ~i~lt~~~f~~~-i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~   80 (105)
T d1nw2a_           2 TMTLTDANFQQA-IQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHHH-TTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred             EEEECHHHHHHH-HhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEEC
Confidence            578999999985 5678899999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCcccccCCCCHHHHHHHHHHH
Q 015217          242 DKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       242 ~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |.. ..++.|..+.+.|.++|.+.
T Consensus        81 G~~-~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          81 GEP-VKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             TEE-EEEEESCCCHHHHHHHTTTT
T ss_pred             CEE-EEEEECCCCHHHHHHHHHHH
Confidence            653 67889999999999988664

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.79  E-value=2.4e-19  Score=135.89  Aligned_cols=101  Identities=22%  Similarity=0.377  Sum_probs=89.7

Q ss_pred             cEEe-CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           32 VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        32 ~~~l-~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      ++++ +.++|+ .++.++++++|+||++||++|+.+.|.|++++..+. ++.|+.||++++++++++|||.++|++++|.
T Consensus        10 vi~i~s~~~~~-~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~   87 (113)
T d1r26a_          10 VVDVYSVEQFR-NIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR   87 (113)
T ss_dssp             CEEECCHHHHH-HHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eEEeCCHHHHH-HHHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEEEEEE
Confidence            5555 667788 677889999999999999999999999999999986 6899999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +|+.+.++.|. +++.+.+++.+.+
T Consensus        88 ~G~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          88 SGKMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            99888899985 5677887777665

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.79  E-value=3.8e-19  Score=134.68  Aligned_cols=104  Identities=27%  Similarity=0.490  Sum_probs=90.7

Q ss_pred             CCCcEEeCccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-cHhHHHhcCCCcccEE
Q 015217           29 SSPVVQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-HQSLAQEYGIRGFPTI  106 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~  106 (411)
                      ...+.+++.++|.+.+.. ++++++|+||++||++|+.+.|.|+++++.+.+ +.++.+|++. +++++++|+|+++|++
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~l~~~~~V~~~Pt~   83 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTF   83 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchhhHhheeeccCCEE
Confidence            356889999999965544 457999999999999999999999999999875 6899999975 7899999999999999


Q ss_pred             EEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217          107 KVFVPGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       107 ~~~~~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      ++|++|+.+.++.|. +.+.+.+++.+.
T Consensus        84 ~~~k~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          84 KILKENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHHc
Confidence            999999888999996 667888887754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.79  E-value=4.7e-20  Score=141.49  Aligned_cols=105  Identities=34%  Similarity=0.706  Sum_probs=88.9

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC--eEEEEEeccccHhHHHhcCCCcccEEE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV--ATVAALDANEHQSLAQEYGIRGFPTIK  107 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--i~~~~vd~~~~~~~~~~~~i~~~P~~~  107 (411)
                      ..|..|++++|++.+..++++|+|+||++||++|+++.|.|+++++.+.+.  ..+..+++.+....+.+++|.++|+++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            468899999999666788999999999999999999999999999999763  223445555566677899999999999


Q ss_pred             EEeCCCC--CcccCCCCCcchhHHHHHHH
Q 015217          108 VFVPGKP--PVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       108 ~~~~g~~--~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|.+|+.  ...|.|.++.++|.+|+.++
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~  110 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAEN  110 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHc
Confidence            9988754  56899999999999999864

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=3.2e-19  Score=135.79  Aligned_cols=105  Identities=23%  Similarity=0.474  Sum_probs=90.2

Q ss_pred             CCCcEEe-CccchhHHH---hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217           29 SSPVVQL-TPNNFKSKV---LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP  104 (411)
Q Consensus        29 ~~~~~~l-~~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  104 (411)
                      ...++.+ +.++|++.+   ...+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++++++++|+|+++|
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~l~~~~~V~~~P   83 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMP   83 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeeceeeccccceeeeE
Confidence            4456666 667777444   35688999999999999999999999999998875 789999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++++|.+|+.+.++.|. +.+.|.+++.+++
T Consensus        84 t~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          84 TFMFLKEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            99999999888888885 6788888887764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.78  E-value=4.3e-19  Score=134.94  Aligned_cols=104  Identities=22%  Similarity=0.471  Sum_probs=88.6

Q ss_pred             CCcEEeCc-cchhH---HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217           30 SPVVQLTP-NNFKS---KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        30 ~~~~~l~~-~~f~~---~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  105 (411)
                      ..++.+.. ++|++   .+..++++++|.||++||++|+.+.|.|+++++.+.+ +.++.+|+++++.++++|+|+++||
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccccccccCeecccce
Confidence            34555544 33442   3456789999999999999999999999999999865 7899999999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++|++|+.+.++.| .+.+.|.+++.++.
T Consensus        83 ~~~~k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          83 FIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence            999999988888888 58889999998874

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=4.1e-19  Score=136.96  Aligned_cols=102  Identities=15%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEecc-----ccHhHHHhcCC--
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDAN-----EHQSLAQEYGI--  100 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~i~~~~vd~~-----~~~~~~~~~~i--  100 (411)
                      .+++|++.+|+ .++.+++.+||.||+|||++|+  +|+|.++++.+.   ..+.++.|||+     .++++|++|+|  
T Consensus         3 g~v~L~~~nFd-~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFE-KTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHH-HHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHH-HHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            47899999999 6778889999999999999999  599999998764   46899999996     46889999988  


Q ss_pred             CcccEEEEEeCCCC---CcccCCCCCcchhHHHHHHHH
Q 015217          101 RGFPTIKVFVPGKP---PVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       101 ~~~P~~~~~~~g~~---~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      +++||+++|++|..   ...|.|.++.++|.+|+.++.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence            58999999988764   457889999999999998763

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5e-19  Score=132.71  Aligned_cols=100  Identities=21%  Similarity=0.499  Sum_probs=85.5

Q ss_pred             EEe-CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217           33 VQL-TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV  110 (411)
Q Consensus        33 ~~l-~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  110 (411)
                      .++ +.++|++.+.. ++++++|+|||+||++|+.+.|.+.++++.+++ +.|+.+|++++++++++|+|+++||+++|+
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~   81 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKCMPTFQFFK   81 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCHhHHHHcCceEEEEEEEEE
Confidence            455 44667754433 467999999999999999999999999998865 579999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcchhHHHHHHH
Q 015217          111 PGKPPVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       111 ~g~~~~~~~g~~~~~~l~~~~~~~  134 (411)
                      +|+.+.++.|. +.+.|.+++.+.
T Consensus        82 ~G~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          82 KGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             TTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHhh
Confidence            99989999995 677888877654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.77  E-value=2.6e-19  Score=133.86  Aligned_cols=96  Identities=23%  Similarity=0.565  Sum_probs=85.5

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      -+.++|+ .++.++++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++++++++|+|.++||+++|++|+.
T Consensus         6 ~s~~~f~-~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~   83 (103)
T d1syra_           6 TSQAEFD-SIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS   83 (103)
T ss_dssp             CSHHHHH-HHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CCHHHHH-HHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcceeeeeeeecceEEEEEECCEE
Confidence            3567888 5667889999999999999999999999999999865 6799999999999999999999999999999988


Q ss_pred             CcccCCCCCcchhHHHHHH
Q 015217          115 PVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       115 ~~~~~g~~~~~~l~~~~~~  133 (411)
                      +.++.|. +.+.|.+++.+
T Consensus        84 v~~~~G~-~~~~l~~~i~k  101 (103)
T d1syra_          84 VDTLLGA-NDSALKQLIEK  101 (103)
T ss_dssp             EEEEESC-CHHHHHHHHHT
T ss_pred             EEEEeCc-CHHHHHHHHHh
Confidence            8899985 67778877764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=1.1e-18  Score=131.56  Aligned_cols=100  Identities=24%  Similarity=0.312  Sum_probs=85.2

Q ss_pred             eCccchhHHHhcCCCe-EEEEEECCCChhhhhhhHHHHHHHHHh----CCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217           35 LTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVL----KGVATVAALDANEHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~----~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  109 (411)
                      |+++.++ .+...+++ +++.||++||++|+++.|.+.+++...    .+.+.+..+|+++.++++++|+|.++||++++
T Consensus         2 l~~~~~e-~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           2 LMDETKQ-AIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCHHHHH-HHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCHHHHH-HHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            5666665 45454554 566799999999999999999997653    34699999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          110 VPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       110 ~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      ++|+...++.|..+.+.+.+++.+.+
T Consensus        81 ~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          81 VNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            99988899999999999999998765

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.6e-18  Score=137.27  Aligned_cols=111  Identities=28%  Similarity=0.605  Sum_probs=95.4

Q ss_pred             CCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccc
Q 015217          155 SKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQ  231 (411)
Q Consensus       155 ~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~  231 (411)
                      |....+.|.+|++.+|.+.+.+.++.++|.||++||++|+.+.|.|.++|+.+.+   .+.++.+|++  ..+|++|+|.
T Consensus         7 p~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~   84 (140)
T d2b5ea1           7 FENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIE   84 (140)
T ss_dssp             CCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCS
T ss_pred             CccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccc
Confidence            3456788999999999998877788999999999999999999999999999865   4677777664  4579999999


Q ss_pred             cccEEEEEcCCC-CCcccccCCCCHHHHHHHHHHHhh
Q 015217          232 GFPTILVFGADK-DSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       232 ~~P~i~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++|++++|++|. ..++.|.|.++.+.|.+||.++..
T Consensus        85 ~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          85 GYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             SSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             cCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence            999999998764 346789999999999999998753

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-18  Score=134.57  Aligned_cols=108  Identities=40%  Similarity=0.763  Sum_probs=96.6

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ...|..++.++|.+. .++++.++|.||++||++|+.+.+.|.++++.+.+   ++.++.|||+.+..++++|+|.++|+
T Consensus         6 ~~~V~~l~~~~f~~~-l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFAEA-LAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHH-HHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHHHH-HhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            456999999999985 56788999999999999999999999999999865   48999999999999999999999999


Q ss_pred             EEEEcCCCC-CcccccCCCCHHHHHHHHHHHhh
Q 015217          236 ILVFGADKD-SPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       236 i~~~~~~~~-~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +++|++|.. ....|.|.++.++|.+||.++++
T Consensus        85 ~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            999987643 35679999999999999999875

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.74  E-value=1.3e-17  Score=128.98  Aligned_cols=106  Identities=24%  Similarity=0.370  Sum_probs=92.1

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChh------hhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccc
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGH------CKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQ  231 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~------c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~  231 (411)
                      ...|++|++++|.+.+ .+++.++|+||++||++      |..+.+.+..+|+.+.+ .+.|+.|||+.++.+|++|+|.
T Consensus        10 ~~~V~~L~~~nf~~~l-~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~   88 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   88 (124)
T ss_dssp             CCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCC
T ss_pred             CCccEECCHHHHHHHH-HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccc
Confidence            4669999999999975 55778999999999985      45566677777877766 4999999999999999999999


Q ss_pred             cccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          232 GFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       232 ~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      ++||+++|+++.  .+.|.|.++.+.|.+|+.+.+.
T Consensus        89 ~yPTi~~f~~g~--~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          89 EEDSIYVFKEDE--VIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             STTCEEEEESSS--EEECCSCCSHHHHHHHHHHHHS
T ss_pred             cCCcEEEeccCc--cEEeeCCCCHHHHHHHHHHhcC
Confidence            999999998764  7899999999999999998864

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.1e-18  Score=132.85  Aligned_cols=101  Identities=17%  Similarity=0.256  Sum_probs=82.1

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217           36 TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        36 ~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      +.+++++.+.. ++++++|.||++||++|+++.|.+.++++.+++.+.|+.||++++++++++|+|+++||+++|.+|+.
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~   88 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   88 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCCcE
Confidence            44678866643 56799999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CcccCCC----------CCcchhHHHHHHHHH
Q 015217          115 PVDYQGA----------RDVKPIAEFALQQIK  136 (411)
Q Consensus       115 ~~~~~g~----------~~~~~l~~~~~~~~~  136 (411)
                      +....|.          .+.+.+++.+....+
T Consensus        89 i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          89 IMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence            4333332          244556666655443

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.73  E-value=8.2e-18  Score=127.36  Aligned_cols=105  Identities=23%  Similarity=0.460  Sum_probs=90.9

Q ss_pred             CCcEEe-CccchHHHHhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          160 NESIEL-NSSNFDELVLK---SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       160 ~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      +.+..+ +.++|.+.+..   .+++++|.||++||++|+.+.|.|.++++.+.+++.|+.||++.++.++++|+|..+|+
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   81 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence            456777 55677666533   57899999999999999999999999999999899999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +++|++|. ...++.| .+.++|.+||.++.
T Consensus        82 ~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~~  110 (112)
T d1ep7a_          82 FHVYKDGV-KADDLVG-ASQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEETTE-EEEEEES-CCHHHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEeC-cCHHHHHHHHHHHh
Confidence            99998655 3667777 58899999999875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.72  E-value=2.1e-18  Score=132.06  Aligned_cols=104  Identities=33%  Similarity=0.637  Sum_probs=88.5

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-----eEEEEEeCCCchhHHhhCcccccc
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-----VKLGHVDCDSEKSLMSKFNVQGFP  234 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-----~~f~~v~~~~~~~l~~~~~v~~~P  234 (411)
                      ++|..|+.++|.+.+.+++++++|.||++||++|+.+.|.|.++++.+...     +.+...+   ...++.+++|.++|
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~P   78 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD---ATANDVPDEIQGFP   78 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEE---TTTSCCSSCCSSSS
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecc---cchhhhcccccCCC
Confidence            579999999999987788889999999999999999999999999999773     3444444   44557789999999


Q ss_pred             EEEEEcCCCC-CcccccCCCCHHHHHHHHHHHh
Q 015217          235 TILVFGADKD-SPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       235 ~i~~~~~~~~-~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++++|+++.. ....|.|.++.++|.+||.++.
T Consensus        79 ti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          79 TIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             EEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EEEEEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            9999976543 4678999999999999999875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=3.1e-18  Score=130.57  Aligned_cols=105  Identities=13%  Similarity=0.177  Sum_probs=81.6

Q ss_pred             CcEEeCccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           31 PVVQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ....++..+++..+.. .++++++.||++||++|+.+.|.|.++++.+.+ ++.++.||++++++++++|||+++|++++
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            4567788888843432 456899999999999999999999999999987 79999999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |++|+.+.++.|..+.+.+++++...+
T Consensus        92 ~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            999999999999999999999998765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=2.6e-18  Score=123.53  Aligned_cols=83  Identities=27%  Similarity=0.401  Sum_probs=75.7

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchh
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI  127 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l  127 (411)
                      +++.+++|||+||++|+.+.|.|+++++.+.+.+.+..+|++++++++++|+|.++||++++.+|+    +.|..+.+.+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l   77 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL   77 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence            578899999999999999999999999999888999999999999999999999999998876553    5688999999


Q ss_pred             HHHHHHH
Q 015217          128 AEFALQQ  134 (411)
Q Consensus       128 ~~~~~~~  134 (411)
                      .+++.++
T Consensus        78 ~~~i~~~   84 (85)
T d1fo5a_          78 VEAIKKR   84 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.5e-18  Score=133.32  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=94.3

Q ss_pred             CcEEeCccchhHHHhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217           31 PVVQLTPNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQSLAQEYGIRGFPTIKV  108 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~P~~~~  108 (411)
                      ....++.++|+..+... +++++|.||++||++|+.+.|.|.++++.+.+. +.++.||++.+++++++|+|.++||+++
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            45678889998544433 457899999999999999999999999999885 7889999999999999999999999999


Q ss_pred             EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217          109 FVPGKPPVDYQGARDVKPIAEFALQQI  135 (411)
Q Consensus       109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~  135 (411)
                      |++|+.+.++.|.++.+.+.+++...+
T Consensus        98 ~~~G~~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          98 FTGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             EETTEEEEEECCCSCHHHHHHHHHHHH
T ss_pred             EEcCcEeeeecCCCCHHHHHHHHHHHh
Confidence            999998999999999999999998776

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=6.5e-17  Score=122.33  Aligned_cols=107  Identities=22%  Similarity=0.492  Sum_probs=91.5

Q ss_pred             CCCCcEEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          158 DSNESIELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      ....+.++.+ ++|...+.+ .+++++|.||++||++|+.+.|.|.+++..+.+.+.++.++++.++.++++|+|..+|+
T Consensus         3 ~~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt   82 (111)
T d1xwaa_           3 AAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT   82 (111)
T ss_dssp             CSCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccE
Confidence            3456777765 667776654 46799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +++|++|.. ..++.|. +.++|.+||.+|+
T Consensus        83 ~~~~~~G~~-v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          83 FVFLKNGVK-VEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEEEETTEE-EEEEESC-CHHHHHHHHHHTC
T ss_pred             EEEEECCEE-EEEEeCC-CHHHHHHHHHhcC
Confidence            999986653 6778885 6678999998763

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4.8e-18  Score=130.82  Aligned_cols=102  Identities=22%  Similarity=0.313  Sum_probs=86.9

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-------CeEEEEEeccccHhHHHhcC--C
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-------VATVAALDANEHQSLAQEYG--I  100 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-------~i~~~~vd~~~~~~~~~~~~--i  100 (411)
                      ..+++|++++|+ .++.+++.++|.||++||.+|.  .|.|.++++.+.+       .+.++.+||+.++.+|.+++  |
T Consensus         4 ~~~v~L~~~nFd-~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           4 KGALPLDTVTFY-KVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             SSSCSCSHHHHH-HHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CceEECCHHhHH-HHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            458899999999 6778899999999999998886  4889999888865       25556668889999999875  7


Q ss_pred             CcccEEEEEeCCCC--CcccCCCCCcchhHHHHHHH
Q 015217          101 RGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQ  134 (411)
Q Consensus       101 ~~~P~~~~~~~g~~--~~~~~g~~~~~~l~~~~~~~  134 (411)
                      .++||+++|++|..  ...|.|.++.++|.+|+++.
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            79999999998864  56899999999999999853

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.69  E-value=3.2e-17  Score=124.83  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=87.9

Q ss_pred             CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcCCCcccE
Q 015217           30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGIRGFPT  105 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~  105 (411)
                      ..+..++.+++. ..+.++++++|+||++||++|+.+.|.|.+++..++..+.++.++...+    ..++++|+|.++||
T Consensus         9 ~~~~~~t~~~~~-~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1           9 KDLEVTTVVRAQ-EALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             TTSEECCHHHHH-HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeeeCCHHHHH-HHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccE
Confidence            345667777777 6678899999999999999999999999999999988877776665433    46899999999999


Q ss_pred             EEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217          106 IKVFVPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus       106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                      +++|++|+...++.|..+.++|.+|+.
T Consensus        88 li~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            999999988899999999999999873

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=1.3e-16  Score=121.19  Aligned_cols=106  Identities=28%  Similarity=0.478  Sum_probs=88.9

Q ss_pred             CCCCcEEe-CccchHHHHh---cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccc
Q 015217          158 DSNESIEL-NSSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGF  233 (411)
Q Consensus       158 ~~~~v~~l-~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~  233 (411)
                      ....++.+ +.++|.+.+.   +.+++++|.||++||++|+.+.|.|.++++.+.+ +.|+.+|++.++.++++|+|+++
T Consensus         4 ~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~l~~~~~V~~~   82 (114)
T d1xfla_           4 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAM   82 (114)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSS
T ss_pred             CCCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeeceeeccccceeee
Confidence            34556666 5566666543   4578999999999999999999999999999875 88999999999999999999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      |++++|++|. ...++.| .+.++|.++|.+++
T Consensus        83 Pt~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~l  113 (114)
T d1xfla_          83 PTFMFLKEGK-ILDKVVG-AKKDELQSTIAKHL  113 (114)
T ss_dssp             SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             EEEEEEECCE-EEEEEeC-cCHHHHHHHHHHhh
Confidence            9999998665 3566777 47899999999875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.69  E-value=1.3e-16  Score=120.46  Aligned_cols=105  Identities=22%  Similarity=0.431  Sum_probs=91.1

Q ss_pred             CCCCcEEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-chhHHhhCccccccE
Q 015217          158 DSNESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-EKSLMSKFNVQGFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-~~~l~~~~~v~~~P~  235 (411)
                      ....+.+++.++|.+.+... +++++|.||++||++|+.+.|.|.++++.+.+ +.|+.+|++. +++++++|+|.++|+
T Consensus         4 ~~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~l~~~~~V~~~Pt   82 (112)
T d1f9ma_           4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   82 (112)
T ss_dssp             CTTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             cceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchhhHhheeeccCCE
Confidence            35679999999999987654 56999999999999999999999999999875 7899999975 789999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      +++|++|. ...++.|. +.+.+.+++.++
T Consensus        83 ~~~~k~G~-~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          83 FKILKENS-VVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEeCC-CHHHHHHHHHHc
Confidence            99998655 36778885 678999998775

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.2e-16  Score=122.78  Aligned_cols=104  Identities=17%  Similarity=0.306  Sum_probs=89.1

Q ss_pred             CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEeCC-----CchhHHhhCcc--
Q 015217          161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKLGHVDCD-----SEKSLMSKFNV--  230 (411)
Q Consensus       161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~---~~~~f~~v~~~-----~~~~l~~~~~v--  230 (411)
                      .+++|++.+|.+.+ .+++.++|.||++||++|++  |.|.++|+.+.   ..+.++.|||+     .+++++++|+|  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            47899999999865 66789999999999999994  99999998874   36999999985     36789999988  


Q ss_pred             ccccEEEEEcCCCCC--cccccCCCCHHHHHHHHHHHhh
Q 015217          231 QGFPTILVFGADKDS--PIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       231 ~~~P~i~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      .++||+++|+++...  .+.|.|+++.++|.+|+.++..
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP  118 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcC
Confidence            479999999877654  3577899999999999999864

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=2.2e-16  Score=119.30  Aligned_cols=104  Identities=25%  Similarity=0.421  Sum_probs=87.0

Q ss_pred             CCCcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          159 SNESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       159 ~~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .+.++++++ ++|.+ +.+.+++++|.||++||++|+.+.|.|.+++..+. .+.|+.||++.++.++++|||.++|+++
T Consensus         7 ~p~vi~i~s~~~~~~-~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~   84 (113)
T d1r26a_           7 YPSVVDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFI   84 (113)
T ss_dssp             CSCCEEECCHHHHHH-HHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceEEeCCHHHHHH-HHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEEE
Confidence            345777754 55666 56778899999999999999999999999999986 6999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +|++|.. ..++.|. +.+.+.+++.+.+
T Consensus        85 ~~~~G~~-v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          85 IARSGKM-LGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             EEETTEE-EEEEESS-CHHHHHHHHHHHH
T ss_pred             EEECCEE-EEEEeCC-CHHHHHHHHHHHh
Confidence            9987653 5677784 6677777776654

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=118.41  Aligned_cols=102  Identities=21%  Similarity=0.321  Sum_probs=88.1

Q ss_pred             cEEe-CccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIEL-NSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l-~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +..+ +.++|.+.+... +++++|.||++||++|+.+.|.|.++++.+.+ +.|+.+|++.++.++++|+|.++|++++|
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~   81 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchhhhhhcCceeceEEEEE
Confidence            3444 567888876544 56899999999999999999999999999875 89999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|.. ..++.| .+.+.|.++|.+++
T Consensus        82 ~~G~~-v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          82 RNKVR-IDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTEE-EEEEES-SCHHHHHHHHHHHH
T ss_pred             ECCEE-EEEEeC-CCHHHHHHHHHHhh
Confidence            87653 677888 48899999999886

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=2.2e-17  Score=118.29  Aligned_cols=81  Identities=22%  Similarity=0.363  Sum_probs=73.2

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHH
Q 015217           51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF  130 (411)
Q Consensus        51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~  130 (411)
                      .++.||++||++|+++.|.|++++..+.+++.++.+|++++++++.+|||.++||+++  +|+  .+|.|..+.+.+.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~--~~~~G~~~~~~l~~~   79 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--VRFVGAPSREELFEA   79 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--EEEECSSCCHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCc--EEEEcCCCHHHHHHH
Confidence            4667999999999999999999999999999999999999999999999999999866  443  468899999999999


Q ss_pred             HHHHH
Q 015217          131 ALQQI  135 (411)
Q Consensus       131 ~~~~~  135 (411)
                      +.+.+
T Consensus        80 i~~~l   84 (85)
T d1nhoa_          80 INDEM   84 (85)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.66  E-value=1.8e-16  Score=118.17  Aligned_cols=96  Identities=28%  Similarity=0.560  Sum_probs=83.1

Q ss_pred             CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCC
Q 015217          166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS  245 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~  245 (411)
                      +.++|.+. .+++++++|.||++||++|+.+.|.+.++++.+.+ ..|+.+|++.+++++++|+|.++||+++|++|. .
T Consensus         7 s~~~f~~~-i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~-~   83 (103)
T d1syra_           7 SQAEFDSI-ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS-S   83 (103)
T ss_dssp             SHHHHHHH-HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred             CHHHHHHH-HhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcceeeeeeeecceEEEEEECCE-E
Confidence            45667664 56788999999999999999999999999999865 789999999999999999999999999998765 3


Q ss_pred             cccccCCCCHHHHHHHHHHH
Q 015217          246 PIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       246 ~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ..++.|. +.+.|.+||.++
T Consensus        84 v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          84 VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEeCc-CHHHHHHHHHhh
Confidence            6678884 778999998765

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.65  E-value=4.1e-16  Score=118.15  Aligned_cols=104  Identities=24%  Similarity=0.449  Sum_probs=85.9

Q ss_pred             CCcEEeCc-cchHHHH---hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          160 NESIELNS-SNFDELV---LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       160 ~~v~~l~~-~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      +.++.+++ +++.+.+   ..++++++|.||++||++|+.+.|.|.++++.+.+ +.|+.+|++.++.++++|+|.++|+
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccccccccCeecccce
Confidence            45666665 3333332   34567999999999999999999999999999865 8899999999999999999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +++|++|. ...++.| .+.+.|.+||.+|.
T Consensus        83 ~~~~k~G~-~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          83 FIFLKDGK-LVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTE-EEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEcC-CCHHHHHHHHHHHh
Confidence            99998664 3566667 57889999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.7e-16  Score=115.35  Aligned_cols=101  Identities=26%  Similarity=0.455  Sum_probs=84.8

Q ss_pred             cEEeCc-cchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          162 SIELNS-SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       162 v~~l~~-~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      +.++++ ++|.+.+... +++++|.||++||++|+.+.|.+.++++.+.+ +.|+.+|++.++.++++|+|+++||+++|
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCHhHHHHcCceEEEEEEEE
Confidence            445644 5677766544 56899999999999999999999999999875 67999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHH
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      ++|.. ..++.|. +.+.|.++|.+.
T Consensus        81 ~~G~~-v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          81 KKGQK-VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             ETTEE-EEEEESC-CHHHHHHHHHHH
T ss_pred             ECCEE-EEEEeCC-CHHHHHHHHHhh
Confidence            87653 6778884 788999988764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.63  E-value=4.8e-16  Score=116.79  Aligned_cols=100  Identities=23%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             eCccchHHHHhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHH----hcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217          165 LNSSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANN----LKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       165 l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~~a~~----~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~  239 (411)
                      |+++.... +.+.+ +..++.|+++||++|+.+.|.+.++|..    +...+.+..+|++..+.++++|+|.++||++++
T Consensus         2 l~~~~~e~-~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           2 LMDETKQA-IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCHHHHHH-HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCHHHHHH-HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            44444444 34444 4567779999999999999999999865    334699999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          240 GADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|.. ..++.|..+.+.+.+++.+.+
T Consensus        81 ~~G~~-~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          81 VNGED-RVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             ETTEE-EEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCeE-EEEEECCCCHHHHHHHHHHhh
Confidence            86654 688899999999999998865

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=2.6e-16  Score=112.88  Aligned_cols=84  Identities=21%  Similarity=0.354  Sum_probs=75.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA  257 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~  257 (411)
                      +++.+++||++||++|+.+.|.|.++++.+.+.+.+..++++.+++++++|+|.++||+++++++     .+.|..+.++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~~~   76 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTKEA   76 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSSHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCc-----EEECCCCHHH
Confidence            46789999999999999999999999999998999999999999999999999999999886543     3679889999


Q ss_pred             HHHHHHHHh
Q 015217          258 IESFALEQL  266 (411)
Q Consensus       258 i~~fi~~~~  266 (411)
                      |.++|.+++
T Consensus        77 l~~~i~~~L   85 (85)
T d1fo5a_          77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998864

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.1e-16  Score=117.48  Aligned_cols=88  Identities=11%  Similarity=0.248  Sum_probs=73.0

Q ss_pred             EEeCccchhHHHh-cCCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEecc-------ccHhHHHh
Q 015217           33 VQLTPNNFKSKVL-NANGVVLVEFYAP-------WCGHCQALTPIWEKAATVLKGVATVAALDAN-------EHQSLAQE   97 (411)
Q Consensus        33 ~~l~~~~f~~~~~-~~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-------~~~~~~~~   97 (411)
                      ...+.++|.+.+. .++++++|+|||+       ||++|+++.|.+.++++.+++++.|+.||++       .+..++++
T Consensus         5 ~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~   84 (119)
T d1woua_           5 SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKN   84 (119)
T ss_dssp             EEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHH
T ss_pred             EeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHh
Confidence            3455677775543 3567999999995       9999999999999999999988999999985       45579999


Q ss_pred             cCCCcccEEEEEeCCCCCcccCC
Q 015217           98 YGIRGFPTIKVFVPGKPPVDYQG  120 (411)
Q Consensus        98 ~~i~~~P~~~~~~~g~~~~~~~g  120 (411)
                      |+|.++||+++|.+|+.+..+.+
T Consensus        85 ~~V~~iPT~i~~~~g~~l~~~~~  107 (119)
T d1woua_          85 LKVTAVPTLLKYGTPQKLVESEC  107 (119)
T ss_dssp             HCCCSSSEEEETTSSCEEEGGGG
T ss_pred             CCeEEEEEEEEEECCeEEeeeec
Confidence            99999999999998876665544

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.59  E-value=8.6e-16  Score=116.81  Aligned_cols=106  Identities=12%  Similarity=0.159  Sum_probs=80.3

Q ss_pred             CCcEEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .....++..++..++... ..++++.|+++||++|+.+.|.+.++++.|.+ ++.++.||++.++.++++|||+.+|+++
T Consensus        11 ~g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~   90 (119)
T d2es7a1          11 RGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATL   90 (119)
T ss_dssp             TTCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEE
T ss_pred             cCCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEE
Confidence            346778888888876554 44788889999999999999999999999988 7999999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +|++|. ...++.|..+.+++.++++..+
T Consensus        91 ~~~~G~-~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          91 VFTDGK-LRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EESCC-----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEcCe-EEEEeeCCCCHHHHHHHHHHHh
Confidence            997654 4788899999999999988754

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=9.1e-16  Score=118.67  Aligned_cols=107  Identities=11%  Similarity=0.126  Sum_probs=94.6

Q ss_pred             CCcEEeCccchHHHHhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHhhCccccccEEE
Q 015217          160 NESIELNSSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQGFPTIL  237 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~l~~~~~v~~~P~i~  237 (411)
                      .....++..+|...+.... +++++.|+++||++|+.+.+.+.++++.|.+. +.++.||++.+++++++|+|.++|+++
T Consensus        17 ~g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~   96 (132)
T d2hfda1          17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_dssp             TTCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEE
T ss_pred             cCCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEE
Confidence            4577889999998766554 47888899999999999999999999999885 789999999999999999999999999


Q ss_pred             EEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          238 VFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      +|++|.. ...+.|..+.+++.+++...+.
T Consensus        97 ~~~~G~~-v~~~~G~~~~~~l~~~i~~ll~  125 (132)
T d2hfda1          97 VFTGGNY-RGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_dssp             EEETTEE-EEEECCCSCHHHHHHHHHHHHS
T ss_pred             EEEcCcE-eeeecCCCCHHHHHHHHHHHhC
Confidence            9987653 7788999999999999988765

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=116.66  Aligned_cols=79  Identities=18%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             CccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217          166 NSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD  244 (411)
Q Consensus       166 ~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~  244 (411)
                      +..++++.+.. .+++++|.||++||++|+.+.|.+.+++..+.+.+.|+.||++.+++++++|+|.++||+++|++|..
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~   88 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   88 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCCcE
Confidence            34577777654 36699999999999999999999999999999999999999999999999999999999999987763

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.57  E-value=2.1e-15  Score=107.82  Aligned_cols=81  Identities=15%  Similarity=0.270  Sum_probs=73.3

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHH
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIES  260 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~  260 (411)
                      .+..||++||++|+.+.|.|++++..+.+++.++.+|++.++.++++|||.++|+++++   +  ..+|.|..+.+.+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~---~--~~~~~G~~~~~~l~~   78 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN---G--VVRFVGAPSREELFE   78 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEET---T--TEEEECSSCCHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEEC---C--cEEEEcCCCHHHHHH
Confidence            46679999999999999999999999999999999999999999999999999998772   2  246889999999999


Q ss_pred             HHHHHh
Q 015217          261 FALEQL  266 (411)
Q Consensus       261 fi~~~~  266 (411)
                      +|.+++
T Consensus        79 ~i~~~l   84 (85)
T d1nhoa_          79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999875

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=8.9e-16  Score=117.89  Aligned_cols=104  Identities=22%  Similarity=0.424  Sum_probs=85.9

Q ss_pred             CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-------eEEEEEeCCCchhHHhhCc--
Q 015217          159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-------VKLGHVDCDSEKSLMSKFN--  229 (411)
Q Consensus       159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-------~~f~~v~~~~~~~l~~~~~--  229 (411)
                      ...+++|++.+|.+++ ..++.++|.||++||..|.  .+.|.++|..+.+.       +.++.+||+.++.+|.+++  
T Consensus         3 ~~~~v~L~~~nFd~~i-~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~   79 (122)
T d1g7ea_           3 TKGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   79 (122)
T ss_dssp             CSSSCSCSHHHHHHHG-GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCS
T ss_pred             CCceEECCHHhHHHHH-hhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccc
Confidence            3568999999999864 6688999999999998775  47899999888762       4445567888889999865  


Q ss_pred             cccccEEEEEcCCC-CCcccccCCCCHHHHHHHHHHH
Q 015217          230 VQGFPTILVFGADK-DSPIPYEGARTAGAIESFALEQ  265 (411)
Q Consensus       230 v~~~P~i~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~  265 (411)
                      |.++|||++|++|. ..+..|.|.++.++|.+||.++
T Consensus        80 I~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          80 KESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             ccCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            77999999998765 3467899999999999999887

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=5.2e-15  Score=108.11  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             hhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCccc
Q 015217           40 FKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY  118 (411)
Q Consensus        40 f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~  118 (411)
                      +.+.+.. .+...++.||++||++|+.+.|.|++++... +++.+..+|++.+++++.+|||.++||+++  +|+.  .+
T Consensus         6 ~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~--~~   80 (96)
T d1hyua4           6 LLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE--FG   80 (96)
T ss_dssp             HHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE--EE
T ss_pred             HHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecccchHHHhhcccccccEEEE--CCEE--EE
Confidence            3334433 4567888899999999999999999999875 469999999999999999999999999754  6653  47


Q ss_pred             CCCCCcchhHHHHH
Q 015217          119 QGARDVKPIAEFAL  132 (411)
Q Consensus       119 ~g~~~~~~l~~~~~  132 (411)
                      .|.++.+.|++++.
T Consensus        81 ~G~~~~~~l~~~le   94 (96)
T d1hyua4          81 QGRMTLTEIVAKVD   94 (96)
T ss_dssp             ESCCCHHHHHHHHC
T ss_pred             ecCCCHHHHHHHHh
Confidence            79999888888763

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.55  E-value=6.1e-15  Score=111.98  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=84.8

Q ss_pred             CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCccccccE
Q 015217          160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNVQGFPT  235 (411)
Q Consensus       160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~v~~~P~  235 (411)
                      ..+..++.+++.+. ..++++++|+||++||++|+.+.|.|.+++..+...+.+..++...+    ..++++|+|.++||
T Consensus         9 ~~~~~~t~~~~~~~-i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1           9 KDLEVTTVVRAQEA-LDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             TTSEECCHHHHHHH-HHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeeeCCHHHHHHH-HhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccE
Confidence            45777778888775 56778899999999999999999999999999988877766553332    36889999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +++|++|. ...++.|..+.++|.+|+
T Consensus        88 li~~~~gk-~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          88 FVHITDGQ-INVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             EEEEETTE-EEEECCTTCCHHHHHHHH
T ss_pred             EEEEECCE-EEEEEcCCCCHHHHHHHH
Confidence            99998765 478899999999999997

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=7.5e-14  Score=106.36  Aligned_cols=95  Identities=17%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             cchhHHH-hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecc----ccHhHHHhcCCCcccEEEEE
Q 015217           38 NNFKSKV-LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDAN----EHQSLAQEYGIRGFPTIKVF  109 (411)
Q Consensus        38 ~~f~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~P~~~~~  109 (411)
                      ++++..+ ..++++++|.||++||++|+.+.|.+   .++.+.+. .+.+..+|++    .+.+++++|+|.++|++++|
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~   89 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILFF   89 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceEEEEE
Confidence            3444333 34688999999999999999999987   55555554 3556666654    45679999999999999999


Q ss_pred             e-CCCCC--cccCCCCCcchhHHHHHH
Q 015217          110 V-PGKPP--VDYQGARDVKPIAEFALQ  133 (411)
Q Consensus       110 ~-~g~~~--~~~~g~~~~~~l~~~~~~  133 (411)
                      . +|+.+  .++.|.++++.+.+++++
T Consensus        90 ~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          90 DGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             eCCCcEEecccccccCCHHHHHHHHhc
Confidence            5 46543  367899999999998864

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=2.6e-13  Score=98.90  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             chHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcc
Q 015217          169 NFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI  247 (411)
Q Consensus       169 ~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~  247 (411)
                      ++.+.+.+- ....++.|+++||++|+.+.|.+.+++..+ .++.+..+|++.+++++++|||.++||+++   ++  ..
T Consensus         5 ~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~---ng--~~   78 (96)
T d1hyua4           5 SLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQNEITERNVMGVPAVFV---NG--KE   78 (96)
T ss_dssp             HHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHHHHHHTTCCSSSEEEE---TT--EE
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecccchHHHhhcccccccEEEE---CC--EE
Confidence            344444443 446788899999999999999999999875 469999999999999999999999999865   33  23


Q ss_pred             cccCCCCHHHHHHHH
Q 015217          248 PYEGARTAGAIESFA  262 (411)
Q Consensus       248 ~y~g~~~~~~i~~fi  262 (411)
                      .|.|..+.++|.+++
T Consensus        79 ~~~G~~~~~~l~~~l   93 (96)
T d1hyua4          79 FGQGRMTLTEIVAKV   93 (96)
T ss_dssp             EEESCCCHHHHHHHH
T ss_pred             EEecCCCHHHHHHHH
Confidence            578999999998876

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=104.50  Aligned_cols=99  Identities=15%  Similarity=0.281  Sum_probs=77.1

Q ss_pred             cEEeCccchHHHHhcC-CCeEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-------CchhHHh
Q 015217          162 SIELNSSNFDELVLKS-KDLWIVEFFAP-------WCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-------SEKSLMS  226 (411)
Q Consensus       162 v~~l~~~~~~~~~~~~-~~~~lv~f~~~-------~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-------~~~~l~~  226 (411)
                      +...+.++|.+.+... +++++|+||++       ||++|+.+.|.+.++++.+.+++.|+.||++       .+..+++
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            3445567777776554 46899999995       9999999999999999999989999999984       4556899


Q ss_pred             hCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217          227 KFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA  262 (411)
Q Consensus       227 ~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi  262 (411)
                      +|+|.++||+++|++++. ...+.+ .+.+.+..|+
T Consensus        84 ~~~V~~iPT~i~~~~g~~-l~~~~~-~~~~ll~~~~  117 (119)
T d1woua_          84 NLKVTAVPTLLKYGTPQK-LVESEC-LQANLVEMLF  117 (119)
T ss_dssp             HHCCCSSSEEEETTSSCE-EEGGGG-GCHHHHHHHH
T ss_pred             hCCeEEEEEEEEEECCeE-Eeeeec-CCHHHHHHHh
Confidence            999999999999987653 444443 3455555554

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.4e-13  Score=106.49  Aligned_cols=101  Identities=17%  Similarity=0.222  Sum_probs=76.3

Q ss_pred             ccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-----------------------ccHh
Q 015217           37 PNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-----------------------EHQS   93 (411)
Q Consensus        37 ~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-----------------------~~~~   93 (411)
                      ++.+....+.++++++|.|||+||++|++.+|.++++...   .+.+..++.+                       .+..
T Consensus         9 g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   85 (136)
T d1z5ye1           9 GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGM   85 (136)
T ss_dssp             TCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCH
T ss_pred             CcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhHHHHHHcCCccceeecccchh
Confidence            3445545556899999999999999999999999998753   2333333332                       2336


Q ss_pred             HHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHHHHHHHHHH
Q 015217           94 LAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQQIKALLK  140 (411)
Q Consensus        94 ~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~~~~~~~~  140 (411)
                      +.+.|++.++|+.++++. |+...++.|..+.+.+.+.+.+.++....
T Consensus        86 ~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~~  133 (136)
T d1z5ye1          86 LGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK  133 (136)
T ss_dssp             HHHHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHHH
T ss_pred             HHHhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence            889999999999988854 55566789999998888888887765543

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=4.7e-12  Score=98.64  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=75.5

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc----------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----------------------   89 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~----------------------   89 (411)
                      +..++++.+. ...-++++++|.||++||++|++..|.+.++.+.+++ +.++.++..                      
T Consensus        10 ~~~~~G~~~~-l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~   87 (134)
T d1zzoa1          10 AKTLDGHDFH-GESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (134)
T ss_dssp             EEBTTSCEEE-GGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEcCCCCEEe-HHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEe
Confidence            4455555555 2223689999999999999999999999999999876 444444432                      


Q ss_pred             -ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217           90 -EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        90 -~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                       .+..+.+.||+.++|++++++..+.+..+.|..+.+++.+.+.+
T Consensus        88 D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1          88 DTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCEEEEESCCCHHHHHHHHHH
T ss_pred             eccchHHHhcCCCccCeEEEECCCCeEEEEECCCCHHHHHHHHHh
Confidence             12378999999999999999765555566888888888777764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.29  E-value=3.7e-12  Score=100.48  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=78.2

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------   89 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---------------------   89 (411)
                      +..++.+... ....++++++|.||++||++|++..|.+.++.+.++. .+.+..+..+                     
T Consensus         8 l~~~~~~~~~-l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           8 LKTADNRPAS-VYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             CEETTSCBGG-GGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             eECCCCCEee-HHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            4455555555 4456789999999999999999999999999988774 4666555432                     


Q ss_pred             -------ccHhHHHhcCCCcccEEEEEe-CCCCCcccCCCCCcchhHHHHHH
Q 015217           90 -------EHQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        90 -------~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                             .+..+++.||+.++|++++++ +|+...++.|..+.+.+.+++++
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHH
Confidence                   233779999999999999995 46556678899998888877764

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=1.1e-11  Score=96.32  Aligned_cols=99  Identities=14%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------------------   90 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---------------------   90 (411)
                      ...++++.+. ...-++++++|.||++||++|+...|.+.++....++ +.++.|+.+.                     
T Consensus         9 ~~~~~G~~~~-l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d   86 (134)
T d1lu4a_           9 ATTLSGAPFD-GASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (134)
T ss_dssp             EEBTTSCEEE-GGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             eECCCCCEEc-HHHhCCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeC
Confidence            4456666666 3333689999999999999999999999999988764 6666776643                     


Q ss_pred             -cHhHHHhcCCCcccEEEEEeCCCC---CcccCCCCCcchhHHHHH
Q 015217           91 -HQSLAQEYGIRGFPTIKVFVPGKP---PVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        91 -~~~~~~~~~i~~~P~~~~~~~g~~---~~~~~g~~~~~~l~~~~~  132 (411)
                       +..+++.||+.++|++++++..+.   +.+..|..+.+++.+.+.
T Consensus        87 ~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~  132 (134)
T d1lu4a_          87 ADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVA  132 (134)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHH
T ss_pred             chHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHH
Confidence             237889999999999999965433   234456777777776664

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.2e-11  Score=93.75  Aligned_cols=96  Identities=19%  Similarity=0.406  Sum_probs=71.6

Q ss_pred             cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----chhHHhhCccccccEEEEE
Q 015217          168 SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----EKSLMSKFNVQGFPTILVF  239 (411)
Q Consensus       168 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----~~~l~~~~~v~~~P~i~~~  239 (411)
                      +++...+.+ .+++++|.||++||++|+.+.+.+   .++.+.+. .+.+..++...    +..++++|+|.++|++++|
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~   89 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILFF   89 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceEEEEE
Confidence            344444433 467999999999999999999987   45555544 46666666543    4468999999999999999


Q ss_pred             cCCCCCc--ccccCCCCHHHHHHHHHH
Q 015217          240 GADKDSP--IPYEGARTAGAIESFALE  264 (411)
Q Consensus       240 ~~~~~~~--~~y~g~~~~~~i~~fi~~  264 (411)
                      ..+++..  .++.|..+.+.+.+++++
T Consensus        90 ~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          90 DGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             eCCCcEEecccccccCCHHHHHHHHhc
Confidence            7655433  356799999999999875

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=2.9e-11  Score=95.11  Aligned_cols=98  Identities=16%  Similarity=0.224  Sum_probs=77.0

Q ss_pred             eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc------------------------
Q 015217           35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE------------------------   90 (411)
Q Consensus        35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~------------------------   90 (411)
                      ++.+... ....++++++|+||++||++|+...|.+.++.+.+++.+.++.|+.+.                        
T Consensus        17 ~ng~~~~-~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~   95 (143)
T d2b5xa1          17 LNGEVTR-EQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF   95 (143)
T ss_dssp             ESCCCCH-HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred             cCCeEec-HHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCcccc
Confidence            4554444 445678999999999999999999999999999998877887776531                        


Q ss_pred             ---cHhHHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHHH
Q 015217           91 ---HQSLAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        91 ---~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                         ...+++.|++.++|++++++. |+...++.|..+.+.+.+.+.+
T Consensus        96 ~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          96 VDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             ECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             ccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence               125788899999999988854 5556678898888777766654

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=2.5e-12  Score=108.23  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=74.2

Q ss_pred             CCcEEeC-ccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217           30 SPVVQLT-PNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI  106 (411)
Q Consensus        30 ~~~~~l~-~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  106 (411)
                      ..+.+++ .++|...+...  +..|+|+||++||++|+.+.+.|.+++..++. +.|++||+++.+ +..+|++.++|++
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~-~~~~~~i~~lPtl  176 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG-AGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT-CSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch-hHHhCCCCCCCeE
Confidence            5577886 47788566443  44799999999999999999999999999865 899999998764 6689999999999


Q ss_pred             EEEeCCCCCcccCC
Q 015217          107 KVFVPGKPPVDYQG  120 (411)
Q Consensus       107 ~~~~~g~~~~~~~g  120 (411)
                      ++|++|..+.++.|
T Consensus       177 ~~yk~G~~v~~~vg  190 (217)
T d2trcp_         177 LVYKGGELISNFIS  190 (217)
T ss_dssp             EEEETTEEEEEETT
T ss_pred             EEEECCEEEEEEEC
Confidence            99999987666555

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.23  E-value=7.4e-12  Score=98.79  Aligned_cols=92  Identities=18%  Similarity=0.299  Sum_probs=71.4

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec---------------------cccHhHHHhcCCCcccE
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA---------------------NEHQSLAQEYGIRGFPT  105 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~---------------------~~~~~~~~~~~i~~~P~  105 (411)
                      ++++++|.||++||++|+..+|.+.++.+.++..+..+.++-                     +.+..+.+.|++.++|+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  109 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence            689999999999999999999999988776544333333222                     12347899999999999


Q ss_pred             EEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217          106 IKVFV-PGKPPVDYQGARDVKPIAEFALQQIKAL  138 (411)
Q Consensus       106 ~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~  138 (411)
                      +++++ +|+.+.++.|..+.+.+.+.+.+.++.+
T Consensus       110 ~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~ka  143 (144)
T d1knga_         110 TFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA  143 (144)
T ss_dssp             EEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred             EEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            98886 4665778889999999888888776543

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.22  E-value=3e-11  Score=94.91  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=61.0

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccccH------------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQ------------------   92 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~~------------------   92 (411)
                      +.-+..++. ...-++++++|+|||+||++|+++.|.+.++.+.+.+  .+.++.|+.++..                  
T Consensus        14 l~~~~~~v~-ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~   92 (144)
T d1i5ga_          14 LKGAAADIA-LPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE   92 (144)
T ss_dssp             EETTEEEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             ccCCCCEee-HHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence            333444544 2333689999999999999999999999999998875  4777777776432                  


Q ss_pred             ------hHHHhcCCCcccEEEEEeC
Q 015217           93 ------SLAQEYGIRGFPTIKVFVP  111 (411)
Q Consensus        93 ------~~~~~~~i~~~P~~~~~~~  111 (411)
                            .+.+.|+|.++|+++++..
T Consensus        93 d~~~~~~l~~~y~v~~iPt~~lid~  117 (144)
T d1i5ga_          93 DRKGMEFLTTGFDVKSIPTLVGVEA  117 (144)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEET
T ss_pred             ChHHHHHHHHHCCCCCcCEEEEEeC
Confidence                  4688899999999999975

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.21  E-value=6.7e-11  Score=91.60  Aligned_cols=105  Identities=16%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             CCCCceEeCChhHHHHhcCCccEEE-----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeE
Q 015217          271 APPEVTELTSQDVMEEKCGSAAICF-----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPAL  339 (411)
Q Consensus       271 ~~~~v~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l  339 (411)
                      ..|.+.+++..+....+..+.++++           +...++.+|++|+++ +.|+|+|..++...++.||+....+|++
T Consensus         4 ~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           4 GSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGV-INFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             SCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTT-SEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             CCCceeccChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCc-eEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            3577888887776666666555433           458999999999998 9999999988899999999988899999


Q ss_pred             EEeecCCCccccCC--CCCChhHHHHHHHHHccCCCCCC
Q 015217          340 VALNVKKGVYTPLK--SAFELEHIVEFVKEAGRGGKGNL  376 (411)
Q Consensus       340 ~v~~~~~~~~~~~~--~~~~~~~i~~fi~~~~~g~~~~~  376 (411)
                      +|++...+...+|.  +.++.++|.+||++++.|++...
T Consensus        83 ~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~  121 (133)
T d2djka1          83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS  121 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCS
T ss_pred             EEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCcc
Confidence            99987665554554  57999999999999999976554

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3e-11  Score=94.85  Aligned_cols=98  Identities=15%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             cchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecccc--HhHHHhcCCCcccEEEEEeC-
Q 015217           38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEH--QSLAQEYGIRGFPTIKVFVP-  111 (411)
Q Consensus        38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~P~~~~~~~-  111 (411)
                      ++.......++|+++|+||++||++|+.+.+..   .++.+.+..++.++.+|.+..  ..++++|++.++|+++++.+ 
T Consensus        32 ~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~  111 (147)
T d2dlxa1          32 ETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPR  111 (147)
T ss_dssp             HHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTT
T ss_pred             HHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCC
Confidence            333435566899999999999999999998844   566677777888999998755  78999999999999999964 


Q ss_pred             -CCCCcccCCCCCcchhHHHHHHHHH
Q 015217          112 -GKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus       112 -g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                       |+. .+.-|..+++.+++.+.+.+.
T Consensus       112 ~ge~-v~~~~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         112 TGQK-LVEWHQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             TCCC-CEEESSCCHHHHHHHHHHHHH
T ss_pred             CCeE-ecccCCCCHHHHHHHHHHHHh
Confidence             544 455566888888887777664

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=5.9e-11  Score=92.58  Aligned_cols=100  Identities=17%  Similarity=0.316  Sum_probs=76.3

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc-------------------
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEH-------------------   91 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~-------------------   91 (411)
                      +..++++.+. .-.-++++++|.||++||++|+...+.+.++.+.+.+ ++.++.++++++                   
T Consensus        10 l~~~~G~~~~-l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~   88 (137)
T d1st9a_          10 LEDTNGKRIE-LSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVL   88 (137)
T ss_dssp             EECTTSCEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEE
T ss_pred             EECCCcCEEe-HHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccc
Confidence            3444544454 2233688999999999999999999999999999876 588888876532                   


Q ss_pred             ---HhHHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHH
Q 015217           92 ---QSLAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        92 ---~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~  132 (411)
                         ..+++.|++.++|++++++. |+.+.++.|..+.+.+.+++.
T Consensus        89 d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_          89 DTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             ETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             cccchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence               26788999999999999965 444667789888776666553

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=3.8e-11  Score=98.68  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=72.4

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc------------------
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN------------------   89 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~------------------   89 (411)
                      .+..+.+++++.+. ...-++++++|.||++||++|++..|.+.++.+.+++++.+..++.+                  
T Consensus        13 PdF~l~d~~G~~~~-Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~   91 (187)
T d2cvba1          13 IDAELPDPRGGRYR-LSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAE   91 (187)
T ss_dssp             CCCEEECTTSCEEE-GGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHH
T ss_pred             CccEeecCCCCEEE-HHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHH
Confidence            34445556666555 33336899999999999999999999999999999988888888642                  


Q ss_pred             -----------ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCC
Q 015217           90 -----------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARD  123 (411)
Q Consensus        90 -----------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~  123 (411)
                                 .+..++++|++.++|++++++... .++|.|..+
T Consensus        92 ~~~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G-~i~y~G~id  135 (187)
T d2cvba1          92 EHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERR-LLRYHGRVN  135 (187)
T ss_dssp             HHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTC-BEEEEECSS
T ss_pred             HhCCcceeeechhhhhcccccccceeeEEEEcCCC-eEEEEeeec
Confidence                       123789999999999999987654 356776544

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=5.8e-11  Score=99.72  Aligned_cols=104  Identities=20%  Similarity=0.243  Sum_probs=82.5

Q ss_pred             CCCcEEeCc-cchHHHHhcCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217          159 SNESIELNS-SNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       159 ~~~v~~l~~-~~~~~~~~~~~~--~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~  235 (411)
                      -..+..+++ ++|.+.+.+..+  .++|.||++||++|+.+.+.+..+|..|.. +.|+.|+++..+ +..+|++..+|+
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~-~~~~~~i~~lPt  175 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG-AGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT-CSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch-hHHhCCCCCCCe
Confidence            356888965 778887765543  789999999999999999999999999865 999999976543 568999999999


Q ss_pred             EEEEcCCCCCcccccC-------CCCHHHHHHHHHHH
Q 015217          236 ILVFGADKDSPIPYEG-------ARTAGAIESFALEQ  265 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~~  265 (411)
                      +++|++|.. ...+.|       .++.+.|..|+.++
T Consensus       176 l~~yk~G~~-v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         176 LLVYKGGEL-ISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEETTEE-EEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCEE-EEEEECccccccccCCHHHHHHHHHHc
Confidence            999988762 223323       35678888887765

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.4e-11  Score=92.53  Aligned_cols=78  Identities=21%  Similarity=0.345  Sum_probs=59.9

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHH--hCCCeEEEEEeccccHhHHHhc-CCCcccEEEEEeC-CCCCccc
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV--LKGVATVAALDANEHQSLAQEY-GIRGFPTIKVFVP-GKPPVDY  118 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~--~~~~i~~~~vd~~~~~~~~~~~-~i~~~P~~~~~~~-g~~~~~~  118 (411)
                      ....++++++|.||++||++|+.++|.+.+..+.  ...++..+.+|+++....+..+ ...++|+++++.+ |+.+..+
T Consensus        20 ~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~   99 (135)
T d1sena_          20 EAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEI   99 (135)
T ss_dssp             HHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTC
T ss_pred             HHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEEEe
Confidence            4567899999999999999999999988654433  2347888999999888777654 4556899999964 5555555


Q ss_pred             CC
Q 015217          119 QG  120 (411)
Q Consensus       119 ~g  120 (411)
                      .|
T Consensus       100 ~g  101 (135)
T d1sena_         100 IN  101 (135)
T ss_dssp             CC
T ss_pred             cC
Confidence            55

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.10  E-value=2.5e-10  Score=89.70  Aligned_cols=65  Identities=22%  Similarity=0.472  Sum_probs=55.9

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccccH------------------------hHHHhcCC
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQ------------------------SLAQEYGI  100 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~~------------------------~~~~~~~i  100 (411)
                      ++++++|+||++||++|++..|.+.++.+++..  ++.++.|+.+...                        ++.+.|++
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            689999999999999999999999999998853  5777777775332                        47889999


Q ss_pred             CcccEEEEEeC
Q 015217          101 RGFPTIKVFVP  111 (411)
Q Consensus       101 ~~~P~~~~~~~  111 (411)
                      .++|++++++.
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            99999999975

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=9.1e-10  Score=86.17  Aligned_cols=98  Identities=10%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEEcCCCCCccc
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDSPIP  248 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~~~~~~~~~  248 (411)
                      ..+.+++++|+|+++||++|+.+.+..   .++.+.++.++.+..++.+..  ..++++|++.++|+++++.+.+++.++
T Consensus        38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~  117 (147)
T d2dlxa1          38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV  117 (147)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred             HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEec
Confidence            345688999999999999999997754   667777777899999998765  578999999999999999754333556


Q ss_pred             ccCCCCHHHHHHHHHHHhhhcCC
Q 015217          249 YEGARTAGAIESFALEQLETNVA  271 (411)
Q Consensus       249 y~g~~~~~~i~~fi~~~~~~~~~  271 (411)
                      .-|..+.+++...+.+.+..+..
T Consensus       118 ~~~~~~~~~fl~~L~~fl~~~~~  140 (147)
T d2dlxa1         118 EWHQLDVSSFLDQVTGFLGEHGQ  140 (147)
T ss_dssp             EESSCCHHHHHHHHHHHHHHTCS
T ss_pred             ccCCCCHHHHHHHHHHHHhhCCC
Confidence            66778898888888887765543

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.99  E-value=1.4e-09  Score=85.26  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEecccc-------------------
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEH-------------------   91 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~-------------------   91 (411)
                      ....++... ...-++++++|+||++||++|+...+.+.++.+.+..  .+.++.++.+++                   
T Consensus        12 ~~~~g~~v~-l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~   90 (144)
T d1o8xa_          12 LRRGDGEVE-VKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFA   90 (144)
T ss_dssp             EEETTEEEE-GGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGG
T ss_pred             EcCCCCEEe-HHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeee
Confidence            344444444 3333689999999999999999999999999999865  466666766532                   


Q ss_pred             -----HhHHHhcCCCcccEEEEEeC-CCCCc
Q 015217           92 -----QSLAQEYGIRGFPTIKVFVP-GKPPV  116 (411)
Q Consensus        92 -----~~~~~~~~i~~~P~~~~~~~-g~~~~  116 (411)
                           .++.+.|+++++|++++++. ++.+.
T Consensus        91 ~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_          91 QSEAVQKLSKHFNVESIPTLIGVDADSGDVV  121 (144)
T ss_dssp             GHHHHHHHHHHTTCCSSSEEEEEETTTCCEE
T ss_pred             cccchhhHHHHcCCCcCCEEEEEeCCCCEEE
Confidence                 26888999999999999974 33444

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.3e-09  Score=84.65  Aligned_cols=89  Identities=11%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------------------CchhHHhhCccc
Q 015217          175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------------------SEKSLMSKFNVQ  231 (411)
Q Consensus       175 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------------------~~~~l~~~~~v~  231 (411)
                      ....++++|.||++||++|+...|.+.+++..   .+.+..++.+                       .+..+.+.|++.
T Consensus        17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   93 (136)
T d1z5ye1          17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY   93 (136)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCC
T ss_pred             HcCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccC
Confidence            44678999999999999999999999988764   2333333322                       233478889999


Q ss_pred             cccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          232 GFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       232 ~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      ++|+.+++..++....++.|..+.+.+.+.|.+.+
T Consensus        94 ~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          94 GAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             SBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            99999999877766667889888888877776654

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=1.9e-10  Score=83.77  Aligned_cols=81  Identities=12%  Similarity=0.160  Sum_probs=66.5

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      .+.-+++++||++||++|+.+.+.++++...+.  ..++.+|.+.++++.++|+++ +|++++  +|+..  ..|..+.+
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~   85 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTS   85 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHH
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHH
Confidence            355679999999999999999999999877665  467889999999999999987 998654  66543  45778888


Q ss_pred             hhHHHHHH
Q 015217          126 PIAEFALQ  133 (411)
Q Consensus       126 ~l~~~~~~  133 (411)
                      .|.+++.+
T Consensus        86 ~L~~~L~~   93 (100)
T d1wjka_          86 KLEKQLRK   93 (100)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            88888864

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=3e-09  Score=80.76  Aligned_cols=110  Identities=19%  Similarity=0.237  Sum_probs=83.4

Q ss_pred             ccCCCCHHHHHHHHHHHhhhcCCCCCceEe-CChhHHHHhcCCccEEEeHHHHHHHHHHhhcCccEEEEecCCCchhhHH
Q 015217          249 YEGARTAGAIESFALEQLETNVAPPEVTEL-TSQDVMEEKCGSAAICFYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLEN  327 (411)
Q Consensus       249 y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~  327 (411)
                      |-|+++.++..+++...+      |.+.-+ .+.+..+.         +...++.+|++|+++ +.|+++|.++....++
T Consensus         1 ~~gei~~~~~~~y~~~~~------Pl~~~f~~~~~~~~~---------~~~~~~~vAk~fkgk-i~Fv~~D~~~~~~~l~   64 (125)
T d2b5ea3           1 YFGEIDGSVFAQYVESGL------PLGYLFYNDEEELEE---------YKPLFTELAKKNRGL-MNFVSIDARKFGRHAG   64 (125)
T ss_dssp             SSCBCCHHHHHHHHHTTS------CEEEEEESSHHHHHH---------HHHHHHHHHHHTTTT-CEEEEEEHHHHTTHHH
T ss_pred             CCCccCHHHHHHHHhcCC------CEEEEEeCChHHHHH---------HHHHHHHHHHHhcCe-eEEEEEchHHhHHHHH
Confidence            457777777777775432      444433 33333333         567999999999998 9999999988888999


Q ss_pred             HhCCCCCCCCeEEEeecCC-Ccccc------------CCCCCChhHHHHHHHHHccCCCCC
Q 015217          328 RVGVGGYGYPALVALNVKK-GVYTP------------LKSAFELEHIVEFVKEAGRGGKGN  375 (411)
Q Consensus       328 ~f~~~~~~~P~l~v~~~~~-~~~~~------------~~~~~~~~~i~~fi~~~~~g~~~~  375 (411)
                      .||++. +.|++++.+... .+|..            ..+++|.++|++|+.++++|++++
T Consensus        65 ~fgl~e-~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          65 NLNMKE-QFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             HTTCCS-CSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             HcCCCc-cCCcEEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            999985 799999987543 44421            236799999999999999999875

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.90  E-value=9e-09  Score=80.42  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=75.5

Q ss_pred             eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC------------------------
Q 015217          165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS------------------------  220 (411)
Q Consensus       165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~------------------------  220 (411)
                      ++.+..... ...++++++.||++||++|+...+.+.++.+.+++.+.+..|+.+.                        
T Consensus        17 ~ng~~~~~~-~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~   95 (143)
T d2b5xa1          17 LNGEVTREQ-LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF   95 (143)
T ss_dssp             ESCCCCHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred             cCCeEecHH-HhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCcccc
Confidence            444333332 3456789999999999999999999999999999888887776432                        


Q ss_pred             ---chhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          221 ---EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       221 ---~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                         +..+++.|++..+|+++++..++.....+.|..+.+.+.+-+.+
T Consensus        96 ~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          96 VDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             ECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             ccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence               22377788899999999997776555677888888887776654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.86  E-value=3.2e-09  Score=83.09  Aligned_cols=89  Identities=19%  Similarity=0.321  Sum_probs=71.6

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC----------------------------CchhHHh
Q 015217          176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD----------------------------SEKSLMS  226 (411)
Q Consensus       176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~----------------------------~~~~l~~  226 (411)
                      ..+++++|.||++||++|+...+.+.++.+.++. .+.+..|+.+                            .+..+++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            3467999999999999999999999999998875 3665555422                            2335788


Q ss_pred             hCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          227 KFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       227 ~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      .||+.++|+++++..+++....+.|..+.+.+..++++
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred             HcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHH
Confidence            99999999999997777656677899999888888764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.86  E-value=5.3e-09  Score=84.90  Aligned_cols=105  Identities=18%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc-----H----------
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEH-----Q----------   92 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~-----~----------   92 (411)
                      +..+..++.+.+. ...-++++++|+||++||++|+...+.+.++.+.+.+ .+.++.|..+..     .          
T Consensus        38 df~l~d~~G~~v~-L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~  116 (176)
T d1jfua_          38 DLAFEDADGKPKK-LSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTR  116 (176)
T ss_dssp             CCEEECTTSCEEE-GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCT
T ss_pred             CeEEECCCcCEEe-HHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcc
Confidence            3445556666666 3334789999999999999999999999999988875 455555654411     1          


Q ss_pred             -------------hHHHhcCCCcccEEEEEeC-CCCCcccCCCC--CcchhHHHHHHH
Q 015217           93 -------------SLAQEYGIRGFPTIKVFVP-GKPPVDYQGAR--DVKPIAEFALQQ  134 (411)
Q Consensus        93 -------------~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~--~~~~l~~~~~~~  134 (411)
                                   .+...+++.++|+.++++. |+.+.++.|..  +.++++++|+..
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         117 LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             TCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred             eeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHh
Confidence                         2233456778999988865 44455677754  445666666554

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=1.2e-08  Score=78.76  Aligned_cols=86  Identities=19%  Similarity=0.263  Sum_probs=67.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------------------chhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-----------------------EKSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-----------------------~~~l~~~~~v~~~  233 (411)
                      ..++++|.||++||++|+...|.+.++++.+++ ..+..++..+                       +..+.+.||+.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            367899999999999999999999999999876 3444443221                       3358888999999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                      |+.+++..++. ...+.|..+.++|.+.|.+
T Consensus       103 P~~~iiD~~G~-i~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1         103 PAYAFVDPHGN-VDVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             SEEEEECTTCC-EEEEESCCCHHHHHHHHHH
T ss_pred             CeEEEECCCCe-EEEEECCCCHHHHHHHHHh
Confidence            99999976664 3345788899888888765

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.82  E-value=3.1e-09  Score=83.31  Aligned_cols=91  Identities=21%  Similarity=0.343  Sum_probs=70.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------CCCchhHHhhCccccccE
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD---------------------CDSEKSLMSKFNVQGFPT  235 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~---------------------~~~~~~l~~~~~v~~~P~  235 (411)
                      .+++++|.||++||++|+...+.+.++.+.+...+....++                     .+.+..+.+.|++..+|+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  109 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence            46799999999999999999999998877665433333322                     122445888999999999


Q ss_pred             EEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          236 ILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      .+++..++.....+.|..+.+++.+.+.+.+.
T Consensus       110 ~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_         110 TFVVGREGTIVYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             EEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             EEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            99998777656677899999999888877653

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=1.9e-08  Score=77.59  Aligned_cols=86  Identities=19%  Similarity=0.350  Sum_probs=66.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----------------------chhHHhhCcccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS----------------------EKSLMSKFNVQGFP  234 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~----------------------~~~l~~~~~v~~~P  234 (411)
                      ..++++|.||++||++|+...+.+.+++..+++ +.+..|+.+.                      +..+++.||+..+|
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P  101 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCC
Confidence            357999999999999999999999999998764 6666666443                      34588889999999


Q ss_pred             EEEEEcCCCCCc--ccccCCCCHHHHHHHHH
Q 015217          235 TILVFGADKDSP--IPYEGARTAGAIESFAL  263 (411)
Q Consensus       235 ~i~~~~~~~~~~--~~y~g~~~~~~i~~fi~  263 (411)
                      +++++..++...  ....|..+.+++.+-|.
T Consensus       102 ~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~  132 (134)
T d1lu4a_         102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVA  132 (134)
T ss_dssp             EEEEECTTSCEEEECCSSSCCCHHHHHHHHH
T ss_pred             EEEEEeCCCeEEEEeccCCCCCHHHHHHHHH
Confidence            999997666422  22356678888877664

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.76  E-value=1.7e-08  Score=78.83  Aligned_cols=66  Identities=20%  Similarity=0.355  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCch------------------------hHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEK------------------------SLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~------------------------~l~~~~~v  230 (411)
                      ..++++|.||++||++|+...|.+.++.+.+..  .+.+..|+.+.+.                        .+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            468999999999999999999999999999976  4777777765422                        26788999


Q ss_pred             ccccEEEEEcCC
Q 015217          231 QGFPTILVFGAD  242 (411)
Q Consensus       231 ~~~P~i~~~~~~  242 (411)
                      ..+|+++++..+
T Consensus       107 ~~iPt~~lid~~  118 (144)
T d1i5ga_         107 KSIPTLVGVEAD  118 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CCcCEEEEEeCC
Confidence            999999999754

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=2.1e-08  Score=77.70  Aligned_cols=87  Identities=18%  Similarity=0.409  Sum_probs=71.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCc----------------------hhHHhhCccccc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSE----------------------KSLMSKFNVQGF  233 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~----------------------~~l~~~~~v~~~  233 (411)
                      ..++++|.||++||++|+...+.+.++.+.+... +.+..++++.+                      ..+++.|++..+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            4578999999999999999999999999999874 77777775432                      247788899999


Q ss_pred             cEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          234 PTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                      |+++++..++....++.|..+.+.+.+++.
T Consensus       104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             ceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            999999877765566779888888777653

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.3e-08  Score=72.97  Aligned_cols=107  Identities=20%  Similarity=0.322  Sum_probs=84.9

Q ss_pred             EEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCC
Q 015217          163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD  242 (411)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~  242 (411)
                      ..|++..-.+.++..+..++|.|+.+.-   ......|.++|+.++ .+.|+.+.   +..+++++|+.. |+|++|++.
T Consensus         3 ~~l~~~~~~e~f~~~~~v~VVGfF~~~~---~~~~~~F~~~A~~~~-d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~   74 (110)
T d1bjxa_           3 TTLPDGAAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEAID-DIPFGITS---NSDVFSKYQLDK-DGVVLFKKF   74 (110)
T ss_dssp             EECCSHHHHHHHHHHSSEEEEEECTTTT---SHHHHHHHHHHHHCS-SSCEEEEC---CSHHHHHTTCSS-CEEEEEESS
T ss_pred             eEcCCHHHHHHHhccCCeEEEEEEcCCC---chHHHHHHHHHHhCc-CceEEEEC---CHHHHHHcCCCC-CeEEEeccC
Confidence            3454444444456778889999987532   567889999999995 58898855   667899999986 999999987


Q ss_pred             CCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChh
Q 015217          243 KDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQD  282 (411)
Q Consensus       243 ~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~  282 (411)
                      .+....|.|..+.++|.+||..+..     |.+.+++.++
T Consensus        75 de~~~~~~~~~~~~~l~~fi~~~~~-----PlV~e~~~e~  109 (110)
T d1bjxa_          75 DEGRNNFEGEVTKENLLDFIKHNQL-----PLVIEFTEQT  109 (110)
T ss_dssp             SSSBCCCCSCCCHHHHHHHHHHHSS-----CCCSSCCCTT
T ss_pred             CccccccCCCCCHHHHHHHHHHcCc-----CcEEecCCCC
Confidence            7777888899999999999999864     8898888754

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=1.9e-08  Score=82.18  Aligned_cols=91  Identities=18%  Similarity=0.310  Sum_probs=71.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------------------------CchhHHhh
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------------------------SEKSLMSK  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------------------------~~~~l~~~  227 (411)
                      ..++++|.||++||++|+...+.+.++++.|++++.|..++.+                             .+..+++.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            4578999999999999999999999999999988888777632                             12348889


Q ss_pred             CccccccEEEEEcCCCCCcccccCCCC----------HHHHHHHHHHHhhhc
Q 015217          228 FNVQGFPTILVFGADKDSPIPYEGART----------AGAIESFALEQLETN  269 (411)
Q Consensus       228 ~~v~~~P~i~~~~~~~~~~~~y~g~~~----------~~~i~~fi~~~~~~~  269 (411)
                      |++..+|+++++..++  .+.|.|.++          ...|.+-|...+...
T Consensus       111 ~~v~~~P~~~liD~~G--~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~  160 (187)
T d2cvba1         111 YRALRTPEVFLFDERR--LLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  160 (187)
T ss_dssp             TTCCEESEEEEECTTC--BEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             ccccceeeEEEEcCCC--eEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence            9999999999998766  677877543          234666666655443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.2e-08  Score=78.86  Aligned_cols=78  Identities=18%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH--hcCCeEEEEEeCCCchhHHhhC-ccccccEEEEEcCCCCCccccc
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN--LKGKVKLGHVDCDSEKSLMSKF-NVQGFPTILVFGADKDSPIPYE  250 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~--~~~~~~f~~v~~~~~~~l~~~~-~v~~~P~i~~~~~~~~~~~~y~  250 (411)
                      ....+++++|.||++||++|+.+.+.+.+....  ...++..+.||++.....+..+ ....+|+++++..++.....+.
T Consensus        21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~  100 (135)
T d1sena_          21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEII  100 (135)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCC
T ss_pred             HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEEEec
Confidence            356688999999999999999999988655433  3347888899988766666543 3445899999976655444444


Q ss_pred             C
Q 015217          251 G  251 (411)
Q Consensus       251 g  251 (411)
                      |
T Consensus       101 g  101 (135)
T d1sena_         101 N  101 (135)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=4.5e-09  Score=76.29  Aligned_cols=81  Identities=6%  Similarity=0.073  Sum_probs=66.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHH
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAG  256 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~  256 (411)
                      ..-+.+++|+++||++|+.+.+.+.+++..|.  ..+..+|.+.++.+.++|++. +|++++  ++.  . ...|.++.+
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~--~-~~~g~~d~~   85 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFHL--NGQ--F-LMMHRVNTS   85 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSS--E-EEESSCCHH
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCceee--cCc--e-EEeCCCCHH
Confidence            44578999999999999999999999987776  567788888999999999987 897765  333  2 245788999


Q ss_pred             HHHHHHHHH
Q 015217          257 AIESFALEQ  265 (411)
Q Consensus       257 ~i~~fi~~~  265 (411)
                      .|.+++.+.
T Consensus        86 ~L~~~L~~l   94 (100)
T d1wjka_          86 KLEKQLRKL   94 (100)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHH
Confidence            999998653

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.61  E-value=6.6e-08  Score=75.41  Aligned_cols=66  Identities=21%  Similarity=0.435  Sum_probs=55.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCch------------------------hHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEK------------------------SLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~------------------------~l~~~~~v  230 (411)
                      ..++++|.||++||++|+...|.+.++.+++..  .+.+..|+.+...                        .+.+.|++
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            468999999999999999999999999999954  4777777755421                        36788999


Q ss_pred             ccccEEEEEcCC
Q 015217          231 QGFPTILVFGAD  242 (411)
Q Consensus       231 ~~~P~i~~~~~~  242 (411)
                      .++|+++++..+
T Consensus       107 ~~~Pt~~lID~~  118 (144)
T d1o73a_         107 ESIPTLITINAD  118 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEECC
Confidence            999999999754

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.61  E-value=3.5e-08  Score=79.01  Aligned_cols=77  Identities=13%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             EeCccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc---CCCcccEEEEE
Q 015217           34 QLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKVF  109 (411)
Q Consensus        34 ~l~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~  109 (411)
                      .++++... .+.. +++..++.||++||++|++..|.+.++++.++ ++.+..|+.+++++...+|   +...+|.+++.
T Consensus        40 ~l~~~~~~-~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~  117 (166)
T d1z6na1          40 GLPSALTE-RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (166)
T ss_dssp             CCCHHHHH-HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             cccHHHHH-HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeec
Confidence            35554444 3333 67888999999999999999999999999875 5788889999999988888   55677887776


Q ss_pred             eCC
Q 015217          110 VPG  112 (411)
Q Consensus       110 ~~g  112 (411)
                      ...
T Consensus       118 d~~  120 (166)
T d1z6na1         118 DEE  120 (166)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            544

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.61  E-value=1.5e-07  Score=67.63  Aligned_cols=95  Identities=12%  Similarity=0.199  Sum_probs=76.5

Q ss_pred             EeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCC
Q 015217          164 ELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD  242 (411)
Q Consensus       164 ~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~  242 (411)
                      .|+. +++..++...+.+++|.|+.+..   ......|.++|..+++.+.|+.+.   +.++++++|+. .|+|++|++-
T Consensus         3 ~i~~~~e~~~F~~~~d~v~VvGfF~~~~---~~~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlfr~f   75 (102)
T d1a8ya2           3 LIEGERELQAFENIEDEIKLIGYFKNKD---SEHYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFYEAF   75 (102)
T ss_dssp             EECSHHHHHHHTTCCSSCEEEEECSSTT---CHHHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEECTT
T ss_pred             eecCHHHHHHHhccCCCEEEEEEECCCC---cHHHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCCC-CCCEEEeeec
Confidence            3444 34555543356788888887532   457899999999999999999854   88999999996 5999999988


Q ss_pred             CCCcccccCC-CCHHHHHHHHHHH
Q 015217          243 KDSPIPYEGA-RTAGAIESFALEQ  265 (411)
Q Consensus       243 ~~~~~~y~g~-~~~~~i~~fi~~~  265 (411)
                      .+....|.|. .+.++|.+||..|
T Consensus        76 de~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          76 MEEPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             CSSEEECSSSSCCHHHHHHHHHHT
T ss_pred             CCCceecCCCCCCHHHHHHHHHHh
Confidence            7778999995 8999999999887

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.57  E-value=1.3e-07  Score=73.75  Aligned_cols=66  Identities=24%  Similarity=0.467  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC--eEEEEEeCCCc------------------------hhHHhhCcc
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK--VKLGHVDCDSE------------------------KSLMSKFNV  230 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~--~~f~~v~~~~~------------------------~~l~~~~~v  230 (411)
                      ..++++|.||++||++|+...+.+.++++++..+  +.+..++.+.+                        ..+.+.|++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4679999999999999999999999999999764  66777765532                        247888999


Q ss_pred             ccccEEEEEcCC
Q 015217          231 QGFPTILVFGAD  242 (411)
Q Consensus       231 ~~~P~i~~~~~~  242 (411)
                      ..+|+++++..+
T Consensus       105 ~~~Pt~~liD~~  116 (144)
T d1o8xa_         105 ESIPTLIGVDAD  116 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEeCC
Confidence            999999999754

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.43  E-value=1.7e-06  Score=66.03  Aligned_cols=110  Identities=18%  Similarity=0.270  Sum_probs=88.1

Q ss_pred             CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccc--cccE
Q 015217          158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ--GFPT  235 (411)
Q Consensus       158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~--~~P~  235 (411)
                      ..|-+.+++.+++...+ +...+.+++|++.. .....+...+.++|+.|++++.|+.+|.+......+.||+.  ..|.
T Consensus         4 ~lPLv~e~~~~n~~~~~-~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~   81 (133)
T d2djka1           4 GSPLIGEIGPETYSDYM-SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPA   81 (133)
T ss_dssp             SCCCSEECCHHHHHHHH-HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSE
T ss_pred             CCCceeccChhhHHHHh-cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCc
Confidence            35779999999999864 55667777777654 34578899999999999999999999988888888899984  5899


Q ss_pred             EEEEcCCCCCcccc--cCCCCHHHHHHHHHHHhhhc
Q 015217          236 ILVFGADKDSPIPY--EGARTAGAIESFALEQLETN  269 (411)
Q Consensus       236 i~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~~~~  269 (411)
                      ++++.......+.|  .+..+.++|.+|+...+...
T Consensus        82 ~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gk  117 (133)
T d2djka1          82 FAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCC
Confidence            99986555445555  35679999999999987654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.24  E-value=6.5e-07  Score=71.36  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCc---cccccEEEEEcC
Q 015217          165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN---VQGFPTILVFGA  241 (411)
Q Consensus       165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~---v~~~P~i~~~~~  241 (411)
                      ++.....++..-..+..++.|+++||++|+...|.+.+++..+. ++.+..|+.+.+++....|.   ...+|.+++...
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~  119 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE  119 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeecCc
Confidence            44444444322246688999999999999999999999999876 57888888888888888884   446788887755


Q ss_pred             CCCCccccc
Q 015217          242 DKDSPIPYE  250 (411)
Q Consensus       242 ~~~~~~~y~  250 (411)
                      .......+.
T Consensus       120 ~~~~~~~~~  128 (166)
T d1z6na1         120 EFNLLGRFV  128 (166)
T ss_dssp             TCCEEEEEE
T ss_pred             cchhccccc
Confidence            443333333

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.24  E-value=2.7e-06  Score=68.36  Aligned_cols=90  Identities=17%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-h----h-----------------------HHhh
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE-K----S-----------------------LMSK  227 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~-~----~-----------------------l~~~  227 (411)
                      ..+++++.|+++||++|+...+.+.++.+.+.. .+.+..|+.+.. .    .                       +...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            458999999999999999999999999998876 466666654421 1    1                       1222


Q ss_pred             CccccccEEEEEcCCCCCcccccCC--CCHHHHHHHHHHHh
Q 015217          228 FNVQGFPTILVFGADKDSPIPYEGA--RTAGAIESFALEQL  266 (411)
Q Consensus       228 ~~v~~~P~i~~~~~~~~~~~~y~g~--~~~~~i~~fi~~~~  266 (411)
                      +++..+|+.+++..++....++.|.  .+.+++.+.|...+
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            3456689999997776544566775  45577888877654

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.20  E-value=6.2e-06  Score=58.93  Aligned_cols=87  Identities=13%  Similarity=0.110  Sum_probs=70.5

Q ss_pred             eEeCChhHHHHhcC-CccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeec
Q 015217          276 TELTSQDVMEEKCG-SAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNV  344 (411)
Q Consensus       276 ~~l~~~~~~~~~~~-~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~  344 (411)
                      ..+++.+.++.+.. ...+.+          ..+.|..+|..+++. +.|+.+..   +++++.+|++   .|++++|++
T Consensus         2 ~~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~-~~F~~t~d---~~va~~~~v~---~~~vvlfr~   74 (102)
T d1a8ya2           2 ELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPY-IPFFATFD---SKVAKKLTLK---LNEIDFYEA   74 (102)
T ss_dssp             EEECSHHHHHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTT-SCEEEECC---HHHHHHHCCC---TTCEEEECT
T ss_pred             eeecCHHHHHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCC-ceEEEECC---HHHHHHcCCC---CCCEEEeee
Confidence            45667777777654 333222          458999999999988 99999987   9999999996   799999998


Q ss_pred             CCCccccCCCC-CChhHHHHHHHHHc
Q 015217          345 KKGVYTPLKSA-FELEHIVEFVKEAG  369 (411)
Q Consensus       345 ~~~~~~~~~~~-~~~~~i~~fi~~~~  369 (411)
                      -.++...|+|. +|.++|.+||..+.
T Consensus        75 fde~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          75 FMEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             TCSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             cCCCceecCCCCCCHHHHHHHHHHhc
Confidence            87777889885 99999999998863

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=4.2e-06  Score=62.82  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=80.2

Q ss_pred             EeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccc-ccEEEEEcCC
Q 015217          164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG-FPTILVFGAD  242 (411)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~-~P~i~~~~~~  242 (411)
                      +++.+++...+ +...+.+++|+.+. ..-..+...+.++|+.|++++.|+.+|.+.....++.||+.. .|.+++....
T Consensus         4 ei~~~~~~~y~-~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~   81 (125)
T d2b5ea3           4 EIDGSVFAQYV-ESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT   81 (125)
T ss_dssp             BCCHHHHHHHH-HTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETT
T ss_pred             ccCHHHHHHHH-hcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecc
Confidence            36677888864 56677888888864 234678999999999999999999999887778899999864 7999888654


Q ss_pred             CCCcccc-------------cCCCCHHHHHHHHHHHhhhc
Q 015217          243 KDSPIPY-------------EGARTAGAIESFALEQLETN  269 (411)
Q Consensus       243 ~~~~~~y-------------~g~~~~~~i~~fi~~~~~~~  269 (411)
                      +...+.+             .++.+.++|.+|+...+...
T Consensus        82 ~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GK  121 (125)
T d2b5ea3          82 EDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD  121 (125)
T ss_dssp             TTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTC
T ss_pred             cCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCC
Confidence            3222222             36789999999999987644

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=5.6e-06  Score=64.94  Aligned_cols=83  Identities=25%  Similarity=0.364  Sum_probs=62.2

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec--------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--------------------------------------   88 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--------------------------------------   88 (411)
                      ..+.+++.|+-+.|++|+++++.+.++.+.   ++.+..+..                                      
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            467899999999999999999999988652   222222211                                      


Q ss_pred             ------cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217           89 ------NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        89 ------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                            .++..+++++||+|+|++ ++.+|+   .+.|..+.+.|.+++.+..+
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~-~~~nG~---~v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEE-EEeCCe---EecCCCCHHHHHHHHHHHHH
Confidence                  133478999999999995 455664   45799999999999987654

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.07  E-value=6.2e-06  Score=65.04  Aligned_cols=79  Identities=14%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             EeCccchhH-HHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc--------------------
Q 015217           34 QLTPNNFKS-KVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE--------------------   90 (411)
Q Consensus        34 ~l~~~~f~~-~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~--------------------   90 (411)
                      ..+.+.+.- ....+++++++.|| +.||++|....+.+.+....+++ .+.++.+..+.                    
T Consensus        15 ~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D   94 (160)
T d2cx4a1          15 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSD   94 (160)
T ss_dssp             CTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEEC
T ss_pred             CCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeec
Confidence            344444441 22346888999888 88999999999999988888875 46666665532                    


Q ss_pred             -cHhHHHhcCCC----------cccEEEEEeCC
Q 015217           91 -HQSLAQEYGIR----------GFPTIKVFVPG  112 (411)
Q Consensus        91 -~~~~~~~~~i~----------~~P~~~~~~~g  112 (411)
                       +..+++.||+.          ..|+++++...
T Consensus        95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~  127 (160)
T d2cx4a1          95 YNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPD  127 (160)
T ss_dssp             TTSHHHHHTTCEEEEETTEEEEECCEEEEECTT
T ss_pred             CCcchHHHcCccccccccccccceeeEEEEcCC
Confidence             23778888873          46777777543

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=7.4e-06  Score=64.21  Aligned_cols=94  Identities=18%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             CCcEEeCccchhHHH-hcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-----------------
Q 015217           30 SPVVQLTPNNFKSKV-LNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDANE-----------------   90 (411)
Q Consensus        30 ~~~~~l~~~~f~~~~-~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-----------------   90 (411)
                      ..+...+++.+.-.. ..+++.+++.|| +.||+.|....+.+.+....++....++.|..+.                 
T Consensus        14 f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~   93 (156)
T d2a4va1          14 LSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHL   93 (156)
T ss_dssp             CEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEE
T ss_pred             eEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCcccee
Confidence            334444555444222 235666777777 7899999999999999999998766666776642                 


Q ss_pred             ----cHhHHHhcCCCccc------EEEEEeCCCCCcccCCCCC
Q 015217           91 ----HQSLAQEYGIRGFP------TIKVFVPGKPPVDYQGARD  123 (411)
Q Consensus        91 ----~~~~~~~~~i~~~P------~~~~~~~g~~~~~~~g~~~  123 (411)
                          +.+++++||+...|      ++++..+|+...++.+...
T Consensus        94 L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~~  136 (156)
T d2a4va1          94 LSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISP  136 (156)
T ss_dssp             EECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCCH
T ss_pred             ccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEEeCC
Confidence                23678888887666      4555567776666655443

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.05  E-value=9.5e-06  Score=65.21  Aligned_cols=87  Identities=20%  Similarity=0.344  Sum_probs=65.3

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec--cc----------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--NE----------------------------------   90 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--~~----------------------------------   90 (411)
                      .+++.+|.|....|++|+.+++.+.++.+.+.+.+.+.....  ..                                  
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            467899999999999999999999999998876554443322  10                                  


Q ss_pred             ---------------------------------------cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217           91 ---------------------------------------HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        91 ---------------------------------------~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                                                             +.+.++++||+++|++++  +|+.+....+..+.+.+.+-+
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                   016678899999999876  777666667777777777666


Q ss_pred             HHHH
Q 015217          132 LQQI  135 (411)
Q Consensus       132 ~~~~  135 (411)
                      ..++
T Consensus       175 ~~L~  178 (181)
T d1beda_         175 NYLL  178 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.91  E-value=2.5e-05  Score=57.36  Aligned_cols=89  Identities=24%  Similarity=0.365  Sum_probs=70.4

Q ss_pred             CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCC
Q 015217           47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGAR  122 (411)
Q Consensus        47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~  122 (411)
                      .+.+.++.|.+ ..|+.|..+...++.++.. .+++.+...+.+  +.++++++|++...|++.+..+|+. -++|.|-.
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP   99 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEecc
Confidence            34455666665 5799999999988888775 456777666655  5678999999999999999988754 58999999


Q ss_pred             CcchhHHHHHHHHH
Q 015217          123 DVKPIAEFALQQIK  136 (411)
Q Consensus       123 ~~~~l~~~~~~~~~  136 (411)
                      ...++..++...+.
T Consensus       100 ~GhEf~SlilaIl~  113 (119)
T d1a8la1         100 AGHEFAAFLEDIVD  113 (119)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHH
Confidence            99999999987663

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=1.2e-05  Score=62.56  Aligned_cols=82  Identities=18%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec--------------------------------------
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--------------------------------------   88 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--------------------------------------   88 (411)
                      ..+.+++.|+-+.|++|+++++.+.++.+... .+.+.....                                      
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI-TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTE-EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccCc-eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            46678999999999999999999998876422 233322211                                      


Q ss_pred             ----cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217           89 ----NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        89 ----~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                          .++..+++++||+|+|+++ +.+|+   ...|..+.+.|.+.+.+
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~-~~nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIV-TSTGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEE-CTTSC---CCCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEE-EcCCc---EecCCCCHHHHHHHHHh
Confidence                1234789999999999964 45565   45788898888888764

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=7.8e-05  Score=54.25  Aligned_cols=88  Identities=15%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             eEeCChhHHHHhcCCccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecC
Q 015217          276 TELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK  345 (411)
Q Consensus       276 ~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~  345 (411)
                      +.+++.+.++.+...+.+.+          ..+.|..+|+.++ . +.|+.+..   .++++.+|++   .|++++|++.
T Consensus         3 ~~l~~~~~~e~f~~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~-d-~~F~~t~~---~~v~~~~~v~---~~~Ivl~k~~   74 (110)
T d1bjxa_           3 TTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAID-D-IPFGITSN---SDVFSKYQLD---KDGVVLFKKF   74 (110)
T ss_dssp             EECCSHHHHHHHHHHSSEEEEEECTTTTSHHHHHHHHHHHHCS-S-SCEEEECC---SHHHHHTTCS---SCEEEEEESS
T ss_pred             eEcCCHHHHHHHhccCCeEEEEEEcCCCchHHHHHHHHHHhCc-C-ceEEEECC---HHHHHHcCCC---CCeEEEeccC
Confidence            34566666665554444322          3478999999984 4 78888876   7899999986   6999999987


Q ss_pred             CCccccCCCCCChhHHHHHHHHHccC
Q 015217          346 KGVYTPLKSAFELEHIVEFVKEAGRG  371 (411)
Q Consensus       346 ~~~~~~~~~~~~~~~i~~fi~~~~~g  371 (411)
                      ......|.++++.++|.+||....-+
T Consensus        75 de~~~~~~~~~~~~~l~~fi~~~~~P  100 (110)
T d1bjxa_          75 DEGRNNFEGEVTKENLLDFIKHNQLP  100 (110)
T ss_dssp             SSSBCCCCSCCCHHHHHHHHHHHSSC
T ss_pred             CccccccCCCCCHHHHHHHHHHcCcC
Confidence            77777789999999999999998544

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1.8e-05  Score=62.81  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--------------------------------------
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--------------------------------------   89 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--------------------------------------   89 (411)
                      .+..++.|+-+.|++|+++++.+.++.+.  +++.+..++..                                      
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~--~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~  113 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  113 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhc--cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence            45789999999999999999999998764  45555544431                                      


Q ss_pred             ------------ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHH
Q 015217           90 ------------EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAE  129 (411)
Q Consensus        90 ------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~  129 (411)
                                  ++..+++++||+++|++++...++......|..+.+.|..
T Consensus       114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~  165 (169)
T d1v58a1         114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNI  165 (169)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHH
Confidence                        1226788999999999887665545667888887765544

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.82  E-value=6.5e-05  Score=52.57  Aligned_cols=73  Identities=19%  Similarity=0.349  Sum_probs=57.5

Q ss_pred             eHHHHHHHHHHhhcC-ccEEEEecCCCch----hhHHHhCCCCCCCCeEEEeecCCCc--cccCC--CC-CChhHHHHHH
Q 015217          296 YLEMLLSVAEKFKRG-HYSFVWAAAGKQP----DLENRVGVGGYGYPALVALNVKKGV--YTPLK--SA-FELEHIVEFV  365 (411)
Q Consensus       296 ~~~~~~~~a~~~~~~-~~~f~~i~~~~~~----~~~~~f~~~~~~~P~l~v~~~~~~~--~~~~~--~~-~~~~~i~~fi  365 (411)
                      ++++++++|+.+.++ .+.|+|||+++.|    -+.+.||++- .-|.+.|++.+.+.  |...+  .. -+.+.|++||
T Consensus        37 Fl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl-~~PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~Wi  115 (119)
T d1a8ya3          37 FLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDL-SAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWL  115 (119)
T ss_dssp             HHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCT-TSCEEEEEETTTCCEEECC-------CCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCC-CCCceeeEecccCcceeeecccccccccHHHHHHHH
Confidence            789999999999987 5999999998876    4777899986 46999999977644  33332  22 4999999999


Q ss_pred             HHHc
Q 015217          366 KEAG  369 (411)
Q Consensus       366 ~~~~  369 (411)
                      ++++
T Consensus       116 edVl  119 (119)
T d1a8ya3         116 EDVL  119 (119)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9975

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=2.5e-05  Score=62.00  Aligned_cols=67  Identities=13%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~   99 (411)
                      +++++++.|| +.||+.|....+.+.+....++. ++.++.|..+.                         +.+++++||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            5788888888 99999999999999999999976 46777776542                         237889999


Q ss_pred             C-----CcccEEEEEeC-CC
Q 015217          100 I-----RGFPTIKVFVP-GK  113 (411)
Q Consensus       100 i-----~~~P~~~~~~~-g~  113 (411)
                      +     ...|+.+++.. |+
T Consensus       123 v~~~~~~~~r~~fvID~~G~  142 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNE  142 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSB
T ss_pred             CCccCCccceeEEEEcCCCE
Confidence            8     56788777764 44

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.79  E-value=2.6e-05  Score=62.02  Aligned_cols=80  Identities=14%  Similarity=0.070  Sum_probs=59.7

Q ss_pred             CCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccc-----------------------------------
Q 015217           48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANE-----------------------------------   90 (411)
Q Consensus        48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~-----------------------------------   90 (411)
                      .+..++.|....|++|+++++.+.++...+..  .+.+..+....                                   
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            45689999999999999999999999887753  44444333210                                   


Q ss_pred             -------------------------------cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217           91 -------------------------------HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL  132 (411)
Q Consensus        91 -------------------------------~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~  132 (411)
                                                     ..+.++++||+++|++++  +|+   .+.|..+.+.+.+++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~---~~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIE  171 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCE---EecCCCCHHHHHHHHc
Confidence                                           014567799999999776  664   4678899888888764

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.71  E-value=0.00017  Score=52.68  Aligned_cols=88  Identities=18%  Similarity=0.326  Sum_probs=69.0

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccccccEEEEEcCCCCCcccccCCCC
Q 015217          178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       178 ~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                      +.+.+++|.+ +.|+.|..+...+.+++.. .+++.+...+.+.  .++++++|++...|++.+..++....++|.|-..
T Consensus        22 ~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~  100 (119)
T d1a8la1          22 NPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPA  100 (119)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC
T ss_pred             CCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccC
Confidence            3455666654 5799999999999999765 5678887777654  4578999999999999999877666799999777


Q ss_pred             HHHHHHHHHHHh
Q 015217          255 AGAIESFALEQL  266 (411)
Q Consensus       255 ~~~i~~fi~~~~  266 (411)
                      -.++..||...+
T Consensus       101 GhEf~SlilaIl  112 (119)
T d1a8la1         101 GHEFAAFLEDIV  112 (119)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             chhHHHHHHHHH
Confidence            788888876654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00013  Score=58.16  Aligned_cols=44  Identities=18%  Similarity=0.049  Sum_probs=39.4

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      -+++++||.++|+||+.|.+..+.|+++.+.+++ .+.+..+-|+
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            4799999999999999999999999999999986 4788888776

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.57  E-value=0.00012  Score=57.84  Aligned_cols=66  Identities=15%  Similarity=0.306  Sum_probs=51.2

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      ++++++|.|| +.||+.|....+.+.+....+.. .+.++.|..+.                            ...+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            5789999999 99999999999999999999986 56677776642                            235788


Q ss_pred             hcCCC------cccEEEEEeCC
Q 015217           97 EYGIR------GFPTIKVFVPG  112 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~g  112 (411)
                      .|++.      ..|+.+++...
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~  133 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPN  133 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTT
T ss_pred             HcCCCcccCCCceeEEEEECCC
Confidence            88873      35677777643

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.57  E-value=0.00014  Score=57.25  Aligned_cols=67  Identities=15%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217           47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~   99 (411)
                      +++++++.||+. ||+.|....+.+.+..+.+.. .+.++.|.++.                         +.+++++||
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            578899999966 999999999999999999975 57777776653                         227788888


Q ss_pred             CC------cccEEEEEeCCC
Q 015217          100 IR------GFPTIKVFVPGK  113 (411)
Q Consensus       100 i~------~~P~~~~~~~g~  113 (411)
                      +.      ..|+.+++.+.+
T Consensus       110 v~~~~~~~~~r~tfvID~~G  129 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDG  129 (166)
T ss_dssp             CEETTTTEECEEEEEECTTS
T ss_pred             CCccccCcccceEEEECCCC
Confidence            75      456677776543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.53  E-value=0.00017  Score=47.99  Aligned_cols=71  Identities=14%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA  131 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~  131 (411)
                      +..|+.++|.-|......+.+    . ..+.+..+|+++++++..+||.+ +|.+.+  +++...  .-+.+.+.+.+|+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~-~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~--~~~~~l--~w~fd~~~l~~~L   71 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----A-RAGAFFSVFIDDDAALESAYGLR-VPVLRD--PMGREL--DWPFDAPRLRAWL   71 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----T-TCCCEEEEECTTCHHHHHHHTTT-CSEEEC--TTCCEE--ESCCCHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----c-cCCcEEEEEccCCHHHHHHhCCe-eeEEEE--CCeeEE--cCccCHHHHHHHH
Confidence            678999999999877655432    1 23678899999999999999976 897643  443322  2346888888887


Q ss_pred             H
Q 015217          132 L  132 (411)
Q Consensus       132 ~  132 (411)
                      .
T Consensus        72 ~   72 (75)
T d1ttza_          72 D   72 (75)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.46  E-value=0.00018  Score=47.75  Aligned_cols=72  Identities=22%  Similarity=0.394  Sum_probs=53.9

Q ss_pred             EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCC-CCcchhHHHH
Q 015217           53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA-RDVKPIAEFA  131 (411)
Q Consensus        53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-~~~~~l~~~~  131 (411)
                      |....++|+.|.+.....+++++++.-...+..+  ++-+++. +||+-..|++++  +|+  ..+.|. .+.+++.+|+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~--vv~~G~vPs~~ei~~~L   76 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGE--LKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTE--EEECSSCCCHHHHHHHC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence            4455899999999999999999887545555444  5566765 699999999877  665  355564 4778887775

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00021  Score=57.38  Aligned_cols=41  Identities=17%  Similarity=0.397  Sum_probs=28.8

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHHHHH---HHhCCCeEEEEEe
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWEKAA---TVLKGVATVAALD   87 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~---~~~~~~i~~~~vd   87 (411)
                      .+.+.+|.|+...|+||+++++.+..+.   ....+.+.+....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            3567899999999999999999774443   3334445554443

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00024  Score=55.28  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC--------------------------------------
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC--------------------------------------  218 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~--------------------------------------  218 (411)
                      +.+.+++.|+...||+|+.+.+.+.++...   .+.+..+..                                      
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            356789999999999999999998887543   233322210                                      


Q ss_pred             ------CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          219 ------DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       219 ------~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                            ..+..+++++||+++|++++ .+|    ..+.|..+.+.|..+|.+..
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~~~-~nG----~~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAVVL-SNG----TLVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEEC-TTS----CEEESCCCHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEEEE-eCC----eEecCCCCHHHHHHHHHHHH
Confidence                  01345888999999999764 222    34679999999999998764

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00039  Score=53.96  Aligned_cols=90  Identities=12%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhCC-----CeEEEEEeccc--c--------------------------H
Q 015217           47 ANGVVLVEFYAPWCG-HCQALTPIWEKAATVLKG-----VATVAALDANE--H--------------------------Q   92 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~~-----~i~~~~vd~~~--~--------------------------~   92 (411)
                      +++++||.|+.+||+ .|....+.+.++.+.+..     .+.+..+..+.  .                          .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            689999999999996 698888888888776542     23333333221  1                          1


Q ss_pred             hHHHhcCCC---------------cccEEEEEeC-CCCCcccCCCCCcchhHHHHHHHHH
Q 015217           93 SLAQEYGIR---------------GFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQQIK  136 (411)
Q Consensus        93 ~~~~~~~i~---------------~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~~~~  136 (411)
                      .+...|++.               +.++++++.. |+....|.+..+++.+.+-+.+.|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            345555543               3456677754 5556677778888888888877763

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.24  E-value=0.00066  Score=44.92  Aligned_cols=70  Identities=14%  Similarity=0.351  Sum_probs=55.6

Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC-CHHHHHHHH
Q 015217          185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR-TAGAIESFA  262 (411)
Q Consensus       185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~-~~~~i~~fi  262 (411)
                      ...+.|+.|..+....++++..+.-...+..+  ++-+++. +|||-++|++++   ++  ...+.|.. +.++|.+|+
T Consensus         6 Vlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI---dg--~vv~~G~vPs~~ei~~~L   76 (77)
T d1iloa_           6 IYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV---DG--ELKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             EECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE---TT--EEEECSSCCCHHHHHHHC
T ss_pred             EeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE---CC--EEEEEecCCCHHHHHHHh
Confidence            34789999999999999999998766666666  4455555 699999999998   44  56778865 889988875

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.24  E-value=0.00055  Score=55.04  Aligned_cols=67  Identities=12%  Similarity=0.255  Sum_probs=52.5

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc----------------------------ccHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN----------------------------EHQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~----------------------------~~~~~~~   96 (411)
                      +++++|+.|| +.||+.|....+.+.+....+.. ++.+..|..+                            .+.++++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            5789999999 99999999999999999999876 5777777664                            2237899


Q ss_pred             hcCCC------cccEEEEEeCCC
Q 015217           97 EYGIR------GFPTIKVFVPGK  113 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~g~  113 (411)
                      +||+.      ..|+.++.+..+
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G  134 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQ  134 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTS
T ss_pred             HcCCeeccCCceEEEEEEECCCC
Confidence            99983      356676665543

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.20  E-value=0.00083  Score=52.20  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             cCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC---------------------chhHHhhCccc-
Q 015217          176 KSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS---------------------EKSLMSKFNVQ-  231 (411)
Q Consensus       176 ~~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~---------------------~~~l~~~~~v~-  231 (411)
                      ...+++++.|| +.||+.|....+.+.++...+... +.+..++.+.                     +..+++.||+. 
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  107 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence            34567777787 899999999999999888888774 6666665432                     34577788763 


Q ss_pred             ---------cccEEEEEcCCCCCccccc-----CCCCHHHHHHHHHHHh
Q 015217          232 ---------GFPTILVFGADKDSPIPYE-----GARTAGAIESFALEQL  266 (411)
Q Consensus       232 ---------~~P~i~~~~~~~~~~~~y~-----g~~~~~~i~~fi~~~~  266 (411)
                               ..|+.+++..++.....+.     +..+.+++.+-+.+..
T Consensus       108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1         108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence                     3588888876663222222     2235667766665543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.20  E-value=0.0008  Score=44.62  Aligned_cols=72  Identities=11%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF  261 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f  261 (411)
                      +.+|..++|+.|......+.+   .  ..+.+..+|++.++.+.++||.. +|.+.+  +++.   ....+++.+.+.+|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~--~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~--~~~~---~l~w~fd~~~l~~~   70 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A--RAGAFFSVFIDDDAALESAYGLR-VPVLRD--PMGR---ELDWPFDAPRLRAW   70 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T--TCCCEEEEECTTCHHHHHHHTTT-CSEEEC--TTCC---EEESCCCHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---c--cCCcEEEEEccCCHHHHHHhCCe-eeEEEE--CCee---EEcCccCHHHHHHH
Confidence            678999999999887665543   1  13778899999999999999976 796542  3221   12235789999998


Q ss_pred             HHH
Q 015217          262 ALE  264 (411)
Q Consensus       262 i~~  264 (411)
                      +..
T Consensus        71 L~~   73 (75)
T d1ttza_          71 LDA   73 (75)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            753

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00033  Score=48.11  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhc--CCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEY--GIRGFPTIKVFVPGKPPVDYQGARDVK  125 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~--~i~~~P~~~~~~~g~~~~~~~g~~~~~  125 (411)
                      +|.|+.++|++|.+....+.+....+.+ +.+..+|.+.++    .+.+..  +++.+|.+++  +|+.+    |..  +
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~I----GG~--~   73 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI----GGY--T   73 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE----ESS--H
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEE----ECH--H
Confidence            6889999999999999999999888775 677788876443    333333  3467999655  66432    322  4


Q ss_pred             hhHHHHHHHH
Q 015217          126 PIAEFALQQI  135 (411)
Q Consensus       126 ~l~~~~~~~~  135 (411)
                      ++.+++.+.+
T Consensus        74 el~~~~~~~~   83 (85)
T d1egoa_          74 DFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            5677766543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.15  E-value=0.0016  Score=53.84  Aligned_cols=88  Identities=10%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             cCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---------------------------ccHhHHH
Q 015217           46 NANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQ   96 (411)
Q Consensus        46 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---------------------------~~~~~~~   96 (411)
                      .+++.+++.|| +.||+.|....+.+.+....+.. ++.++.|.++                           .+.++++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            46788888888 99999999999999998888875 4677766654                           2347899


Q ss_pred             hcCC-------CcccEEEEEeCCCCC-c--ccC--CCCCcchhHHHHHH
Q 015217           97 EYGI-------RGFPTIKVFVPGKPP-V--DYQ--GARDVKPIAEFALQ  133 (411)
Q Consensus        97 ~~~i-------~~~P~~~~~~~g~~~-~--~~~--g~~~~~~l~~~~~~  133 (411)
                      .||+       ...|+++++...+.+ .  .|.  -.++.+++++.+..
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            9998       357888888654432 1  221  13355566665543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=0.00062  Score=52.55  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      .+++.|++.||+.|....+.+.+..+.+.+ ++.++.+..+
T Consensus        32 vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d   72 (153)
T d1xvwa1          32 VLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG   72 (153)
T ss_dssp             EEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC
T ss_pred             EEEEecccccccchhhhhhhhhhhhhhhcccccccccccch
Confidence            444455589999999999999998888876 5777777665

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00024  Score=57.34  Aligned_cols=117  Identities=24%  Similarity=0.405  Sum_probs=63.6

Q ss_pred             ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccc
Q 015217           90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSN  169 (411)
Q Consensus        90 ~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  169 (411)
                      +...+++++||+|+|++++  +|+..+...+. ....+..+..+.++  +.++|..+........ -..+..-..+... 
T Consensus        38 ~~~~~a~~~gi~GtPtfiV--nGky~v~~~~~-~~~~~~~~~~~~~~--~~~~L~~k~~~~~~~~-~~eG~~Y~~l~~p-  110 (195)
T d1un2a_          38 QQEKAAADVQLRGVPAMFV--NGKYQLNPQGM-DTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQ-YEDGKQYTTLEKP-  110 (195)
T ss_dssp             HHHHHHHHTTCCSSSEEEE--TTTEEECGGGS-CCSSHHHHHHHHHH--HHHHHTC----------CCBTTTEEECSSC-
T ss_pred             HHHHHHHHhCCCcCCEEEE--CCeeeeccccc-cccchhhhHHHHHH--HHHHHHhCcccccCCC-CCCCCcceECCCC-
Confidence            4567899999999999766  78754443332 22222333333221  1223322222111111 1112222333322 


Q ss_pred             hHHHHhcCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCeEEEEEeCC
Q 015217          170 FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWK---KAANNLKGKVKLGHVDCD  219 (411)
Q Consensus       170 ~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~f~~v~~~  219 (411)
                            ..+++.++.|++-+||+|..+.+.+.   ++.+.+...+.|..+...
T Consensus       111 ------~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         111 ------VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             ------CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             ------CCCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence                  12456799999999999999999764   566677777777766543

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00064  Score=53.20  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=37.6

Q ss_pred             cEEeCccchhHHHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEec
Q 015217           32 VVQLTPNNFKSKVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDA   88 (411)
Q Consensus        32 ~~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~   88 (411)
                      +...+.+.+. ...-+++++++.|| +.||+.|....+.+.+....+.+ +.++.|..
T Consensus        29 L~~~~g~~vs-Lsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~   84 (164)
T d1qxha_          29 LVAKDLSDVT-LGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISA   84 (164)
T ss_dssp             EECTTSCEEE-GGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEES
T ss_pred             EECCCCCEEe-HHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEc
Confidence            3333444444 22235788888888 66999999999999999887754 55555544

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.08  E-value=0.00085  Score=51.57  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=57.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC---------------------------------------
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC---------------------------------------  218 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~---------------------------------------  218 (411)
                      .+..++.|+...||+|+.+.+....+.+... .+.+.....                                       
T Consensus        26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~  104 (150)
T d1t3ba1          26 EKHVVTVFMDITCHYCHLLHQQLKEYNDLGI-TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP  104 (150)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHTTE-EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHhccCc-eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence            4577888999999999999999888875422 233332211                                       


Q ss_pred             ---CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217          219 ---DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE  264 (411)
Q Consensus       219 ---~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~  264 (411)
                         ..+..+++++||+++|++++ .+|    ....|....+.+.+.|.+
T Consensus       105 ~~i~~~~~la~~lGv~GTPt~~~-~nG----~~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         105 NIVKKHYELGIQFGVRGTPSIVT-STG----ELIGGYLKPADLLRALEE  148 (150)
T ss_dssp             SHHHHHHHHHHHHTCCSSCEEEC-TTS----CCCCSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCcCCCCEEEE-cCC----cEecCCCCHHHHHHHHHh
Confidence               01335888999999999886 222    356888999999988765

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.0011  Score=51.29  Aligned_cols=45  Identities=11%  Similarity=0.130  Sum_probs=34.9

Q ss_pred             cCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 015217          176 KSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS  220 (411)
Q Consensus       176 ~~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~  220 (411)
                      ..++.++++|| +.||+.|....+.|.+....|+....+..|+.+.
T Consensus        31 ~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~   76 (156)
T d2a4va1          31 ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADS   76 (156)
T ss_dssp             HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccch
Confidence            34556666666 7899999999999999999998776666676443

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.05  E-value=0.0013  Score=51.61  Aligned_cols=68  Identities=10%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      .++++++.|| +.||+.|....+.+.+....+.+ .+.++.|..+.                            ..++++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            3457888999 89999999999999998888864 56676666542                            237788


Q ss_pred             hcCCC-----cccEEEEEeCCCC
Q 015217           97 EYGIR-----GFPTIKVFVPGKP  114 (411)
Q Consensus        97 ~~~i~-----~~P~~~~~~~g~~  114 (411)
                      +||+.     ..|+.++....+.
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~  134 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMK  134 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTE
T ss_pred             HcCCCccccceeEEEEEEcCCCe
Confidence            89884     4577777765443

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.04  E-value=0.00074  Score=44.86  Aligned_cols=55  Identities=18%  Similarity=0.344  Sum_probs=41.2

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---hHHHhcCCCcccEEEEEeCCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFPTIKVFVPGKP  114 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~~~g~~  114 (411)
                      ++.|+.+||++|.+....|.+.      ++.+..+|+++++   ++.+.+|...+|++++  +|+.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~~   60 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH   60 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            6889999999999998877652      3566667777654   4556779999999754  5543

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0009  Score=52.57  Aligned_cols=80  Identities=16%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------------------------------------
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-------------------------------------  220 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-------------------------------------  220 (411)
                      .+..++.|+...||+|+.+.+.+.++....  ++.+..+....                                     
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~  113 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  113 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence            346789999999999999999998887654  45555553210                                     


Q ss_pred             -------------chhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHH
Q 015217          221 -------------EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIES  260 (411)
Q Consensus       221 -------------~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~  260 (411)
                                   +..+++++|++++|++++...++ ......|..+.+.|..
T Consensus       114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~G~~~~~~l~~  165 (169)
T d1v58a1         114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQKTLNI  165 (169)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHH
Confidence                         23377788999999988766544 3566788777766554

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.97  E-value=0.0011  Score=52.06  Aligned_cols=66  Identities=14%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------------------------chhHHhhCcc
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------------------------EKSLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------------------------~~~l~~~~~v  230 (411)
                      .+.+++.|| +.||+.|....+.|.+....|... +.+..|+.+.                         +..+++.||+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv  123 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  123 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCC
Confidence            456777777 899999999999999999999874 7777776543                         3347777877


Q ss_pred             -----ccccEEEEEcCCC
Q 015217          231 -----QGFPTILVFGADK  243 (411)
Q Consensus       231 -----~~~P~i~~~~~~~  243 (411)
                           ...|+.+++..++
T Consensus       124 ~~~~~~~~r~~fvID~~G  141 (169)
T d2bmxa1         124 LNADGVADRVTFIVDPNN  141 (169)
T ss_dssp             BCTTSSBCEEEEEECTTS
T ss_pred             CccCCccceeEEEEcCCC
Confidence                 4568888886555

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00096  Score=44.55  Aligned_cols=51  Identities=14%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh---HHHhcCCCcccEEEE
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS---LAQEYGIRGFPTIKV  108 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~P~~~~  108 (411)
                      ++.|+.+||++|.+....|.+.      ++.+..+|.+.+++   ..+..|.+.+|.+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            6789999999999998887553      36677788877664   345679999999765

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.85  E-value=0.0025  Score=42.12  Aligned_cols=66  Identities=17%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh---HHhhCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS---LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI  258 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~---l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i  258 (411)
                      ++.|..++|++|......+.+.      .+.|..++.+.+++   ..+.+|...+|.+++   +++    +-|.++.+.|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i---~g~----~igGf~~d~l   69 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV---DGE----HWSGFRPERI   69 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE---TTE----EEESCCHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE---CCE----EEeCCCHhHH
Confidence            6789999999999999888752      46677777776654   446678899998865   222    3455666665


Q ss_pred             HH
Q 015217          259 ES  260 (411)
Q Consensus       259 ~~  260 (411)
                      .+
T Consensus        70 ~~   71 (74)
T d1r7ha_          70 KQ   71 (74)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.79  E-value=0.0032  Score=49.25  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=58.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCC-----------------------------------
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDS-----------------------------------  220 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~-----------------------------------  220 (411)
                      .+..++.|+...||+|+.+.+.+.++...+..  ++.+.......                                   
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            34679999999999999999999999888754  45554443111                                   


Q ss_pred             -------------------------------chhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217          221 -------------------------------EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL  263 (411)
Q Consensus       221 -------------------------------~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~  263 (411)
                                                     ....++++||+++|++++   ++   ..+.|..+.+++.++|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I---ng---~~~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII---GE---YIFDESVTEEELRGYIE  171 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE---TT---EEECTTCCHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE---CC---EEecCCCCHHHHHHHHc
Confidence                                           012445689999999988   33   24688999999988874

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.004  Score=48.18  Aligned_cols=108  Identities=10%  Similarity=0.023  Sum_probs=63.2

Q ss_pred             CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhh-hhhHHHHHHHHHhC----CCeEEEEEeccccH-----------
Q 015217           29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQ-ALTPIWEKAATVLK----GVATVAALDANEHQ-----------   92 (411)
Q Consensus        29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~-~~~~~~~~~~~~~~----~~i~~~~vd~~~~~-----------   92 (411)
                      +..+.+.+++.+. ...-+++++||.||.+||+.|. .....+..+...+.    ..+.+..+..+...           
T Consensus         8 dF~l~d~~G~~vs-l~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d2b7ka1           8 PFHLEDMYGNEFT-EKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS   86 (169)
T ss_dssp             CCEEEETTSCEEE-GGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CeEEEeCCCCEEC-HHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence            3445566666665 3334689999999999997544 44444444443332    23444444332110           


Q ss_pred             -----------------hHHH----------------hcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHHHHHHH
Q 015217           93 -----------------SLAQ----------------EYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQQIKA  137 (411)
Q Consensus        93 -----------------~~~~----------------~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~~~~~  137 (411)
                                       ....                .+.+.+.|++++++. |+.+..|.+..+++.+.+-+.+.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~  165 (169)
T d2b7ka1          87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS  165 (169)
T ss_dssp             TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence                             1111                234667898888865 55566788888888877777666643

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.61  E-value=0.0024  Score=49.41  Aligned_cols=43  Identities=14%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      +++++++.|| +.||+.|....+.+.+....+.. ...+..|..+
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d   69 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD   69 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCc
Confidence            4789999999 88999999999999999888864 4566666553

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.61  E-value=0.0042  Score=49.25  Aligned_cols=86  Identities=12%  Similarity=0.016  Sum_probs=58.1

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG   99 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~   99 (411)
                      +++.++++|| +.||+.|....+.+.+...++.. ++.+..|.+|.                         +.+++++||
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            5788999999 77899999999999999998874 56666666542                         236788888


Q ss_pred             CC------cccEEEEEeCCCCCccc----C--CCCCcchhHHHHHH
Q 015217          100 IR------GFPTIKVFVPGKPPVDY----Q--GARDVKPIAEFALQ  133 (411)
Q Consensus       100 i~------~~P~~~~~~~g~~~~~~----~--g~~~~~~l~~~~~~  133 (411)
                      +.      ..|+.++.+..+. +++    .  -.++.+++.+.++.
T Consensus       109 v~~~~~g~~~r~tfiID~~G~-Ir~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGI-IQAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSB-EEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchhe-EEEEeecCCCcccCHHHHHHHHHH
Confidence            84      3466666655333 222    1  23455555555544

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.61  E-value=0.0057  Score=48.12  Aligned_cols=40  Identities=25%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV  216 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v  216 (411)
                      +.++.+|.|.+-.||+|+.+.+.+..+.+.+.....+...
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~   56 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKN   56 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEE
Confidence            3467889999999999999999999999998776555544

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.59  E-value=0.0057  Score=50.35  Aligned_cols=88  Identities=10%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             cCCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHh
Q 015217          176 KSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMS  226 (411)
Q Consensus       176 ~~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~l~~  226 (411)
                      ...+.++++|| ++||+.|..-...|.+....|.. .+.+.-|++++                           +..+++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            34567777777 89999999999999999999976 37777676553                           345888


Q ss_pred             hCcc-------ccccEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 015217          227 KFNV-------QGFPTILVFGADKDSPIPYEG----ARTAGAIESFAL  263 (411)
Q Consensus       227 ~~~v-------~~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~  263 (411)
                      .||+       ...|+++++..++.....+.+    .++.+++.+.+.
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~  154 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVK  154 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            8887       356889998766632222112    246777777663

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.58  E-value=0.0026  Score=49.67  Aligned_cols=44  Identities=14%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      ..+.+++.|| +.||+.|....+.+.++..+|.. .+.+..|+.++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~   77 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDS   77 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCc
Confidence            3567888898 99999999999999999999988 47777776554

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.58  E-value=0.0021  Score=43.52  Aligned_cols=54  Identities=11%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      +..|+.+||++|.+....|.+.      ++.+..+|++.++    .+.+..|.+.+|++++  +|+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            5779999999999988777553      3566677777554    4456668999999754  554

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.54  E-value=0.0014  Score=46.74  Aligned_cols=66  Identities=17%  Similarity=0.295  Sum_probs=44.6

Q ss_pred             HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh-----HHHhcCCCcccEEEEEeCCC
Q 015217           43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS-----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~-----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ....+++  +|.|+.+||++|.+....|.+...... .+.+..+|.+.+..     +-+..|.+.+|++++  +|+
T Consensus         7 ~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~-~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_           7 SKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG-LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             HHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT-SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             HHhccCC--EEEEECCCCchHHHHHHHHHHhCCccc-eeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            3344444  778999999999999988876543322 36677777765542     233457888999754  564

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=96.51  E-value=0.0031  Score=49.13  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             CCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          178 KDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       178 ~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      .+.+++.||.. ||+.|....+.|.++...|.. .+.+..|+.+.
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~   75 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDT   75 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEeccccc
Confidence            46788888855 999999999999999999976 47777777654

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0024  Score=42.51  Aligned_cols=51  Identities=10%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH---HhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL---MSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l---~~~~~v~~~P~i~~  238 (411)
                      ++.|..+||++|......+.+.      .+.|..++.+.+++.   .+..|.+.+|.+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5788999999999999888653      367777888776653   34568889999886

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.003  Score=41.75  Aligned_cols=54  Identities=17%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc--H-hHHHhcCCCcccEEEEEeCCC
Q 015217           52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--Q-SLAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~--~-~~~~~~~i~~~P~~~~~~~g~  113 (411)
                      ++.|+.++|++|+++...|.+..      +.+..+|.+.+  . .+.+..+...+|.+++  +|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~~------i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDKG------LSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT------CCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCE
Confidence            68899999999999998877642      44555555533  2 3455678889999654  554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.36  E-value=0.0062  Score=47.56  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      .++++||.|| +.||+.|......+.+..+.+.. .+.++.|.++.                            +..+++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHH
Confidence            4578999999 79999999999999999988875 67888887762                            237788


Q ss_pred             hcCCC-----cccEEEEEeCCC
Q 015217           97 EYGIR-----GFPTIKVFVPGK  113 (411)
Q Consensus        97 ~~~i~-----~~P~~~~~~~g~  113 (411)
                      +||+.     ..++.+++..++
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~G  127 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQG  127 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTTS
T ss_pred             HhCCccccccceeeeEEEcCCC
Confidence            88873     235666665443

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0012  Score=45.11  Aligned_cols=76  Identities=25%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhC--ccccccEEEEEcCCCCCcccccCCCC
Q 015217          181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKF--NVQGFPTILVFGADKDSPIPYEGART  254 (411)
Q Consensus       181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~--~v~~~P~i~~~~~~~~~~~~y~g~~~  254 (411)
                      .+|.|..++|++|......+.++...+.+ +.+..++.+.+    ..+.+..  +++.+|.|++   +++    +-|.. 
T Consensus         2 kvviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi---~g~----~IGG~-   72 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV---DQQ----HIGGY-   72 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE---TTE----EEESS-
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE---CCE----EEECH-
Confidence            36889999999999999999999988875 66766665433    2344433  3467999876   222    34544 


Q ss_pred             HHHHHHHHHHHh
Q 015217          255 AGAIESFALEQL  266 (411)
Q Consensus       255 ~~~i~~fi~~~~  266 (411)
                       +++.+++.+++
T Consensus        73 -~el~~~~~~~~   83 (85)
T d1egoa_          73 -TDFAAWVKENL   83 (85)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -HHHHHHHHhcC
Confidence             57777777664

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.25  E-value=0.0068  Score=48.38  Aligned_cols=87  Identities=9%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      .+.++++|| ++||+.|..-...|.++...|.. .+.+..|+.+.                            +..+++.
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~  112 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  112 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence            467888888 89999999999999999999987 47777777553                            3458888


Q ss_pred             Cccc------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHHH
Q 015217          228 FNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFALE  264 (411)
Q Consensus       228 ~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~  264 (411)
                      ||+.      ..|+.+++..++.....+.+    ....+++.+.+..
T Consensus       113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            8873      35777777766633333222    2456777766643

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.0027  Score=49.40  Aligned_cols=57  Identities=16%  Similarity=0.240  Sum_probs=41.8

Q ss_pred             CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---HhHHHhcCCCccc
Q 015217           47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFP  104 (411)
Q Consensus        47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P  104 (411)
                      +++++++.||.. ||+.|....+.+.+...++++ +.++.|.++..   .++++++++..++
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~~~~~~  101 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEGIENAK  101 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhCCcccc
Confidence            578888889955 788899999999999998875 67777777632   3455555554443

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.21  E-value=0.0041  Score=48.26  Aligned_cols=55  Identities=9%  Similarity=0.034  Sum_probs=38.5

Q ss_pred             EEeCccchhHHHhcCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc
Q 015217           33 VQLTPNNFKSKVLNANGVVLVEFY-APWCGHCQALTPIWEKAATVLKGVATVAALDAN   89 (411)
Q Consensus        33 ~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~   89 (411)
                      ...+.+.+. ...-++++++|.|| +.||+.|....+.+.+....+++ +.++.|..+
T Consensus        28 ~~~~g~~vs-Lsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d   83 (163)
T d1psqa_          28 TTTDLSKKS-LADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN-TVVLTVSMD   83 (163)
T ss_dssp             ECTTSCEEE-GGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT-EEEEEEESS
T ss_pred             ECCCCCEEe-hHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhcc-cceEEEEec
Confidence            334444444 22336788888888 67999999999999888777754 566666665

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.017  Score=46.12  Aligned_cols=67  Identities=13%  Similarity=0.264  Sum_probs=51.8

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ   96 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~   96 (411)
                      .++.+++.|| ..||+.|......+.+....+.. .+.++.|.++.                            ..++++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            4788889899 89999999999999999999886 67777777652                            226888


Q ss_pred             hcCCC------cccEEEEEeCCC
Q 015217           97 EYGIR------GFPTIKVFVPGK  113 (411)
Q Consensus        97 ~~~i~------~~P~~~~~~~g~  113 (411)
                      .||+.      .+|+.++....+
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g  135 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKG  135 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTS
T ss_pred             HhCCCcccCCeeeEEEEEECCCC
Confidence            89885      346666665433

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.07  E-value=0.003  Score=49.60  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=41.5

Q ss_pred             CcEEeCccchhHHHhcCCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEecc
Q 015217           31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCG-HCQALTPIWEKAATVLK---GVATVAALDAN   89 (411)
Q Consensus        31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~i~~~~vd~~   89 (411)
                      .+...+++.+. ...-+++++||.|+.+||+ .|....+.+.++.+.+.   .++.++.|.+|
T Consensus        15 ~l~d~~G~~vs-l~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          15 TFQNQDGKNVS-LESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             EEECTTSCEEE-TGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             EEEcCCCCEEc-HHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            33444444444 2223689999999999997 69999999998888774   25777777665

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.04  E-value=0.0058  Score=41.19  Aligned_cols=51  Identities=12%  Similarity=0.292  Sum_probs=37.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~  238 (411)
                      +..|..++|++|......+.+.      .+.|..+|.+.+..    +.+..|...+|.|++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            5678999999999999888653      35667777776554    344557888998865

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.88  E-value=0.0035  Score=44.64  Aligned_cols=56  Identities=16%  Similarity=0.344  Sum_probs=38.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh-----HHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS-----LMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-----l~~~~~v~~~P~i~~  238 (411)
                      ++.|..+||++|......+.++...+. .+.+..+|.+.+..     +.+..|.+.+|.|++
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~-~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEG-LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT-SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccc-eeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            778999999999999998887544332 35566666555432     233346778998876

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.016  Score=44.79  Aligned_cols=41  Identities=12%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD  219 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~  219 (411)
                      .+++++.|| +.||+.|....+.|.+++..+.+ +.+..|+.+
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d   85 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISAD   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEESS
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEcC
Confidence            456777777 67999999999999999888764 666666544

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.73  E-value=0.013  Score=38.52  Aligned_cols=51  Identities=16%  Similarity=0.288  Sum_probs=36.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHhhCccccccEEEE
Q 015217          182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILV  238 (411)
Q Consensus       182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~l~~~~~v~~~P~i~~  238 (411)
                      ++.|..++|++|+.....+.+..      +.|..++.+.+.   .+.+..|...+|.|++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~~------i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDKG------LSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT------CCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            67899999999999998887642      455555554433   3445667888998765

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.70  E-value=0.0089  Score=46.42  Aligned_cols=60  Identities=12%  Similarity=0.068  Sum_probs=38.4

Q ss_pred             CCCCcEEeCccchhHHHhcCCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc
Q 015217           28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKGVATVAALDANE   90 (411)
Q Consensus        28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~   90 (411)
                      ++..+...+.+.+. ...-+++++|+.||+ .||+.|....+.+.+......  +.++.|..+.
T Consensus        24 P~F~L~~~~g~~v~-L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d~   84 (166)
T d1xvqa_          24 PAFTLTGGDLGVIS-SDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKDL   84 (166)
T ss_dssp             CCCEEECTTSCEEE-GGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCeEEECCCCCEEe-hHHhCCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccch
Confidence            33334444445554 222367889999995 478889999998887776543  4555565553

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.63  E-value=0.011  Score=45.11  Aligned_cols=42  Identities=7%  Similarity=0.139  Sum_probs=32.4

Q ss_pred             CeEEEE-EeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217          179 DLWIVE-FFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS  220 (411)
Q Consensus       179 ~~~lv~-f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~  220 (411)
                      +.+++. |.+.||+.|....+.+.+....+.. .+.+..++.+.
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~   73 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGP   73 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchh
Confidence            444444 4489999999999999999888877 47888777554

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.048  Score=44.11  Aligned_cols=44  Identities=11%  Similarity=-0.006  Sum_probs=34.6

Q ss_pred             cCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           46 NANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        46 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      ..++++++.|| +.||+.|......+.+....+.. .+.+..|.++
T Consensus        25 ~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~D   70 (220)
T d1prxa_          25 LGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID   70 (220)
T ss_dssp             HTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             cCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccc
Confidence            35678888888 67999999999999999998876 4666666543

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=95.55  E-value=0.014  Score=45.46  Aligned_cols=66  Identities=17%  Similarity=0.247  Sum_probs=49.2

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      +++++++|| +.||+.|....+.|.+....|.+ .+.+..|+.+.                            +..+++.
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~  112 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD  112 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHHH
Confidence            457788888 89999999999999999999866 46666666543                            3357777


Q ss_pred             Cccc-----cccEEEEEcCCC
Q 015217          228 FNVQ-----GFPTILVFGADK  243 (411)
Q Consensus       228 ~~v~-----~~P~i~~~~~~~  243 (411)
                      ||+.     ..|+.+++..++
T Consensus       113 ygv~~~~~~~~r~tfvID~~G  133 (170)
T d1zofa1         113 YDVLFEEAIALRGAFLIDKNM  133 (170)
T ss_dssp             TTCEETTTEECEEEEEEETTT
T ss_pred             cCCCccccceeEEEEEEcCCC
Confidence            8773     357778876665

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.05  Score=41.24  Aligned_cols=91  Identities=11%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             CCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhcC-----CeEEEEEeCCCc----------------------------h
Q 015217          177 SKDLWIVEFFAPWCG-HCKKLAPEWKKAANNLKG-----KVKLGHVDCDSE----------------------------K  222 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~-~c~~~~~~~~~~a~~~~~-----~~~f~~v~~~~~----------------------------~  222 (411)
                      ..++++|.|+.+||+ .|....+.+.++.+.+..     .+.+..+..+..                            .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            468999999999997 588888888777776533     244444443211                            1


Q ss_pred             hHHhhCccc---------------cccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217          223 SLMSKFNVQ---------------GFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE  267 (411)
Q Consensus       223 ~l~~~~~v~---------------~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  267 (411)
                      .+...|++.               ..++++++..++.....|.+..+.+++.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            234445432               236778887776655566677788888888877763

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.25  E-value=0.032  Score=42.66  Aligned_cols=86  Identities=10%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      .+.++++|| +.||+.|..-.+.|.+....|.. ...+.-|+.+.                            ...+++.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  105 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  105 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence            467889999 89999999999999999998876 46565555443                            3346777


Q ss_pred             Ccccc------ccEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 015217          228 FNVQG------FPTILVFGADKDSPIPYEG----ARTAGAIESFAL  263 (411)
Q Consensus       228 ~~v~~------~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~  263 (411)
                      ||+..      .++.+++..++.....+.+    ..+.+++.+.+.
T Consensus       106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1         106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            77652      3566777655532222222    234566666654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.026  Score=44.37  Aligned_cols=43  Identities=12%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..++++|.++|+||+.|....+.++++.++|+++ +.+..+-|+
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            5789999999999999999999999999999864 666555544

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.45  E-value=0.08  Score=41.51  Aligned_cols=86  Identities=13%  Similarity=0.034  Sum_probs=55.9

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHhhCcc
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------------EKSLMSKFNV  230 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------------~~~l~~~~~v  230 (411)
                      .+.++++|| +.||+.|......|.+...+|.. .+.+..|+.+.                         +..+++.||+
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv  109 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhCC
Confidence            467888888 78899999999999999999976 46666666554                         3346667776


Q ss_pred             c------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 015217          231 Q------GFPTILVFGADKDSPIPYEG----ARTAGAIESFAL  263 (411)
Q Consensus       231 ~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~  263 (411)
                      .      ..|+.++...++.....+..    ..+.+++.+.+.
T Consensus       110 ~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lk  152 (186)
T d1n8ja_         110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK  152 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             CcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHH
Confidence            3      24666776555532111111    245666666554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=94.32  E-value=0.049  Score=42.15  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      ++.++++|| +.||+.|..-...|.+.+..|.. .+.+..|+++.                            +..+++.
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  106 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  106 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHH
Confidence            467888888 79999999999999999999877 57777777663                            2357777


Q ss_pred             Cccc-----cccEEEEEcCCCCCcccccCC----CCHHHHHHHHH
Q 015217          228 FNVQ-----GFPTILVFGADKDSPIPYEGA----RTAGAIESFAL  263 (411)
Q Consensus       228 ~~v~-----~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~  263 (411)
                      ||+.     ..++.+++..++.....+.+.    .+.+++.+.+.
T Consensus       107 ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~  151 (170)
T d2h01a1         107 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLID  151 (170)
T ss_dssp             TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHH
T ss_pred             hCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHH
Confidence            8763     236777776655322222222    24456666553

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.21  E-value=0.3  Score=32.27  Aligned_cols=81  Identities=12%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             chHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC-CC
Q 015217          169 NFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK-DS  245 (411)
Q Consensus       169 ~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~-~~  245 (411)
                      ++..++.+..  .+++|...-..    +.+-..|.++|..+++.+.|.......+           -|.+-+|-++. .+
T Consensus         7 dl~~~l~n~t~v~pVVV~~Gv~d----~~fNeTF~~~A~~l~~Dy~Fvs~~~~~~-----------~~kLsV~LP~e~dE   71 (98)
T d2b5ea2           7 DLPAYLANETFVTPVIVQSGKID----ADFNATFYSMANKHFNDYDFVSAENADD-----------DFKLSIYLPSAMDE   71 (98)
T ss_dssp             CHHHHHHHSCCSSCEEEEEESCC----HHHHHHHHHHHHHTTTTCEEEEEECTTS-----------CCEEEEEETTEEEE
T ss_pred             hhHHHHhcCcccCCEEEeCCccc----cchhHHHHHHHHHhhcceEEEeccCCCC-----------CccEEEECCCCCCC
Confidence            3555565665  48888777522    6899999999999999999998773322           25666775553 36


Q ss_pred             cccccCCC----CHHHHHHHHHH
Q 015217          246 PIPYEGAR----TAGAIESFALE  264 (411)
Q Consensus       246 ~~~y~g~~----~~~~i~~fi~~  264 (411)
                      ++.|.|..    +.+.+.+||.-
T Consensus        72 PIvf~G~~~~i~~a~~l~~WlkV   94 (98)
T d2b5ea2          72 PVVYNGKKADIADADVFEKWLQV   94 (98)
T ss_dssp             EEECCSCHHHHTSHHHHHHHHHH
T ss_pred             CeEEcCccCCcccHHHHHHHHee
Confidence            99999963    45668888853

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.048  Score=42.76  Aligned_cols=40  Identities=23%  Similarity=0.460  Sum_probs=27.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCeEEEEEe
Q 015217          178 KDLWIVEFFAPWCGHCKKLAPEWK---KAANNLKGKVKLGHVD  217 (411)
Q Consensus       178 ~~~~lv~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~f~~v~  217 (411)
                      +.+.+|.|++-.||+|+.+.+.+.   +........+.+....
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            346688899999999999988663   3344444455665554

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.13  Score=40.65  Aligned_cols=87  Identities=10%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK  227 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~  227 (411)
                      .+.++++|| ..||+.|......|.+....|.. .+.+..|+++.                            ...+++.
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~  113 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED  113 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHH
Confidence            467778888 89999999999999999999987 47777777654                            2347777


Q ss_pred             Cccc------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHHH
Q 015217          228 FNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFALE  264 (411)
Q Consensus       228 ~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~  264 (411)
                      ||+.      ..++.+++...+.....+.+    ..+.+++.+.+..
T Consensus       114 ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~a  160 (197)
T d1qmva_         114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA  160 (197)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHh
Confidence            7764      24667777655522111111    2456666666533

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.011  Score=47.26  Aligned_cols=42  Identities=17%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             CCCeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEec
Q 015217           47 ANGVVLVEFYAPWCGHCQALTPIWE---KAATVLKGVATVAALDA   88 (411)
Q Consensus        47 ~~~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~i~~~~vd~   88 (411)
                      .+++.++.|++-+|+||.++.|.+.   ++.+.+++++.|..+.+
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~  156 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV  156 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEEC
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEec
Confidence            3678899999999999999999775   56666666666666554

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.35  Score=38.77  Aligned_cols=43  Identities=19%  Similarity=0.120  Sum_probs=33.6

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~  219 (411)
                      ..+.++++|| ++||+.|......|.+....|... +.+.-|+++
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~D   70 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID   70 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccc
Confidence            3466777777 689999999999999999999873 666666554

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.03  E-value=0.09  Score=37.14  Aligned_cols=57  Identities=16%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             HhcCCCeEEEEEeC-----CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HhhCccccccEEEE
Q 015217          174 VLKSKDLWIVEFFA-----PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL----MSKFNVQGFPTILV  238 (411)
Q Consensus       174 ~~~~~~~~lv~f~~-----~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l----~~~~~v~~~P~i~~  238 (411)
                      +.++++  +|.|..     +.|++|......+.+.      .+.|..++.+.++.+    .+.-+.+.+|.|++
T Consensus        11 ~i~~~~--VvvF~Kgt~~~p~Cp~c~~ak~lL~~~------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi   76 (109)
T d1wika_          11 LTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV   76 (109)
T ss_dssp             HHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC
T ss_pred             HHhcCC--EEEEeCCCCCCCCChHHHHHHHHHHhc------CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE
Confidence            445444  455765     7899999999888642      356777777776543    34456678998886

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.67  E-value=0.89  Score=31.20  Aligned_cols=83  Identities=12%  Similarity=0.023  Sum_probs=58.6

Q ss_pred             HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC
Q 015217          174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR  253 (411)
Q Consensus       174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~  253 (411)
                      +.+-.+++.+..+.+.|..|.++...++++|.. .+++.+..-+          .+....|++.+.+++....++|.|-.
T Consensus        14 f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~l-SdkI~~~~~~----------~~~~r~Ps~~i~~~g~~~gI~F~GiP   82 (102)
T d1hyua3          14 LEKLTKPVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDN----------TLPVRKPSFLITNPGSQQGPRFAGSP   82 (102)
T ss_dssp             HTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECT----------TSSSCSSEEEEECTTCCCSCEEESCC
T ss_pred             HHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhh-CCCeEEEEcC----------CCCCCCCeEEEecCCCEeeeEEecCC
Confidence            333345566666777889999999988988875 4577775421          12234699998877666679999987


Q ss_pred             CHHHHHHHHHHHhh
Q 015217          254 TAGAIESFALEQLE  267 (411)
Q Consensus       254 ~~~~i~~fi~~~~~  267 (411)
                      .-.++..||..-+.
T Consensus        83 ~GhEF~Slilail~   96 (102)
T d1hyua3          83 LGHEFTSLVLALLW   96 (102)
T ss_dssp             CGGGHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHh
Confidence            77888888876554

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=92.40  E-value=0.26  Score=39.45  Aligned_cols=43  Identities=9%  Similarity=0.035  Sum_probs=35.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217           47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN   89 (411)
Q Consensus        47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~   89 (411)
                      +++.++++|| +.||+.|-.....+.+....+.. ++.+..+.+|
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~D   73 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN   73 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCc
Confidence            6888999999 88999999999999999988876 5666666654

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.69  E-value=0.79  Score=31.49  Aligned_cols=79  Identities=10%  Similarity=0.061  Sum_probs=58.7

Q ss_pred             cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCc
Q 015217           46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDV  124 (411)
Q Consensus        46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~  124 (411)
                      .-.+++.+..+...|..|.++...+++++.. .++|.+..-+.+          ....|++.+..+|.. -++|.|-...
T Consensus        16 ~l~~~V~l~~~~~~~~~s~el~~~l~eva~l-SdkI~~~~~~~~----------~~r~Ps~~i~~~g~~~gI~F~GiP~G   84 (102)
T d1hyua3          16 KLTKPVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDNTL----------PVRKPSFLITNPGSQQGPRFAGSPLG   84 (102)
T ss_dssp             TCCSCEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECTTS----------SSCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             hCCCCEEEEEEeCCChhHHHHHHHHHHHHhh-CCCeEEEEcCCC----------CCCCCeEEEecCCCEeeeEEecCCCc
Confidence            3456677777778899999988888888875 457777543322          234699988877654 6899999999


Q ss_pred             chhHHHHHHHH
Q 015217          125 KPIAEFALQQI  135 (411)
Q Consensus       125 ~~l~~~~~~~~  135 (411)
                      .++..++...+
T Consensus        85 hEF~Slilail   95 (102)
T d1hyua3          85 HEFTSLVLALL   95 (102)
T ss_dssp             GGHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            99999998765

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.26  E-value=0.12  Score=39.91  Aligned_cols=43  Identities=19%  Similarity=0.512  Sum_probs=32.9

Q ss_pred             CCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhcC---CeEEEEEeCC
Q 015217          177 SKDLWIVEFFAPWCG-HCKKLAPEWKKAANNLKG---KVKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~~~~c~-~c~~~~~~~~~~a~~~~~---~~~f~~v~~~  219 (411)
                      ..++++|.|+.+||+ .|....+.+.++...+..   .+.+..|+.+
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            357899999999997 699999999888877742   4666665544

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=91.07  E-value=0.29  Score=37.21  Aligned_cols=43  Identities=14%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc
Q 015217          178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE  221 (411)
Q Consensus       178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~  221 (411)
                      .+.+++.|| +.||+.|....+.|.+...++++ +.+.-|+++..
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~   85 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLP   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCH
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcH
Confidence            457777788 56888899999999999999975 67777777654

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.54  E-value=0.18  Score=38.35  Aligned_cols=42  Identities=12%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD  219 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~  219 (411)
                      ..+.+++.|| +.||+.|....+.+.+....+.+ +.+..|+.+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN-TVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT-EEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc-cceEEEEec
Confidence            3467777777 78999999998888877766653 555555433

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.24  E-value=0.3  Score=37.25  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=30.4

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch
Q 015217          177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK  222 (411)
Q Consensus       177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~  222 (411)
                      ..+++++.|| +.||+.|....+.|.+......  +.+..|+.+...
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d~~~   86 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKDLPF   86 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESSCHH
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccchHH
Confidence            3456777788 5688989988888877776654  456666655433

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.54  E-value=0.33  Score=34.03  Aligned_cols=48  Identities=19%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217           58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK  113 (411)
Q Consensus        58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  113 (411)
                      |.|++|.+....|...      .+.+..+|.+++++    +.+..+-..+|.+++  +|+
T Consensus        28 p~Cp~c~~ak~lL~~~------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~g~   79 (109)
T d1wika_          28 AKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--RGD   79 (109)
T ss_dssp             CCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--SSS
T ss_pred             CCChHHHHHHHHHHhc------CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--CCE
Confidence            7899999998777532      25666777776654    445567889999654  554

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.49  E-value=1.2  Score=32.98  Aligned_cols=37  Identities=5%  Similarity=-0.101  Sum_probs=23.9

Q ss_pred             cccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217          230 VQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL  266 (411)
Q Consensus       230 v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  266 (411)
                      +...|+++++...+.....|.+..+.+.+.+-|.+.+
T Consensus       127 i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~i  163 (169)
T d2b7ka1         127 VDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  163 (169)
T ss_dssp             TTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             eeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4456888998777765556667777766555444443

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=1.9  Score=27.45  Aligned_cols=70  Identities=10%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             EEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217           54 EFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ  133 (411)
Q Consensus        54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~  133 (411)
                      +|+.+.|+.|++..-.+....-    .+....++-+....+.+..+...+|++.. .+|.. .     .+...|.+|+.+
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi----~~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~~-i-----~eS~~I~~yLd~   71 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI----PVELHVLLNDDAETPTRMVGQKQVPILQK-DDSRY-M-----PESMDIVHYVDK   71 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC----CCEEEECCTTTTHHHHHHHSSSCCCEEEE-TTTEE-E-----ECHHHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC----CcccccccccchHHHHHhCCCCceEEEEE-cCCCE-E-----ecHHHHHHHHHH
Confidence            5788899999887765554433    23444556666677777888889998653 34432 1     346678888865


Q ss_pred             H
Q 015217          134 Q  134 (411)
Q Consensus       134 ~  134 (411)
                      .
T Consensus        72 ~   72 (75)
T d1g7oa2          72 L   72 (75)
T ss_dssp             H
T ss_pred             h
Confidence            4