Citrus Sinensis ID: 015224

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-

MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR

cccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHcccccccEEccccccccccccccEEEEccccccccccHHEEEHHHcccccccccccccccccccccEEEEEcHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccc

ccHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccccccccccHHccccccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHcccHHHHcccEEEEcccccEEcccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccHHHcccccEEEccccEEEccccEEEEcccccccccEEccccccccEcccccEEEEEHHHHHEEEcccccHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEEEEccccccccccccHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHcccccccccccEccccccccccccccccccEcccccHHHHHHHHHHHHHccccccccccc

MGIKVFVTLFMLTSVFLCFVYIstpakrftslykfnpiimtsnkitlksnnssypVTFAYLLSASKGDTIKLKRALLALyhpgnhylihmdreapEKEQREIAEfvanepvfrmVNNVYivgkpnlvtyrgptmLATTLHAIAMLLRCCkwdwfinlsasdyplvtqDDLIEAFsdlprdlnfiqhSSHLGwkmnkrakpiiidpglyslnkSEIWWVIKQRSipsafklytedthpkehgsawtilsrPFAEYCimgwdnlpRSLLLYYTnfvsspegyfQTVICnsedyknttanhdlhyitwdtppkqhprslglkDFRRMVLssrpfarkfkqnspvldkIDRDLLKRHRRrytnggwcseserdqacsgfqsenygvlrpgpgsrRLKNLLTKLISArnftkrqcr

MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEfvanepvfrmvNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHyitwdtppkqhprslgLKDFRRMVLSSrpfarkfkqnspvldkidrdllKRHRRrytnggwcseserdQACSgfqsenygvlrpgpgsrrLKNLLtklisarnftkrqcr

**IKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMD*********EIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDT*************F**MV****************LDKIDRDLLKRHRRRYTNGGWC*******************************LLTKL************

***KVFVTLFMLTSVFLCFVYISTPAKRFTSLYKF*******************PVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISA*NFTK*QC*

*GIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISAR******C*

iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		411	2.2.26 [Sep-21-2011]
Q9EPI1		821	Xylosyltransferase 1 (Fra	yes	no	0.639	0.320	0.270	2e-20
Q5QQ56		950	Xylosyltransferase 1 OS=C	yes	no	0.635	0.274	0.287	2e-20
Q5QQ50		865	Xylosyltransferase 2 OS=C	no	no	0.688	0.327	0.292	5e-20
Q5QQ57		945	Xylosyltransferase 1 OS=P	yes	no	0.686	0.298	0.280	8e-20
Q86Y38		959	Xylosyltransferase 1 OS=H	yes	no	0.686	0.294	0.280	8e-20
Q5QQ49		867	Xylosyltransferase 2 OS=B	no	no	0.652	0.309	0.290	2e-19
Q9H1B5		865	Xylosyltransferase 2 OS=H	no	no	0.639	0.304	0.295	3e-19
Q5QQ51		865	Xylosyltransferase 2 OS=P	no	no	0.639	0.304	0.295	4e-19
Q9EPL0		865	Xylosyltransferase 2 OS=M	no	no	0.652	0.309	0.297	1e-18
Q811B1		953	Xylosyltransferase 1 OS=M	yes	no	0.635	0.273	0.284	2e-18

>sp\|Q9EPI1\|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1	Back alignment and function desciption

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 141/318 (44%), Gaps = 55/318 (17%)

Query: 55  PVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRM 114
           PV  A++L      + +L+R   A+YH  + Y IH+D+ +     R++ +F       R 
Sbjct: 190 PVRIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRS-NYLHRQVLQFS------RQ 242

Query: 115 VNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDW--FINLSASDYPLVTQDDLIE 172
            +NV +        + G ++L+T L ++  LL    W W  FINLSA+DYP+ T D L+ 
Sbjct: 243 YDNVRVTSWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRTNDQLV- 301

Query: 173 AFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYT 232
           AF    RD+NF++       +  ++      D     L      W +  R IP    +  
Sbjct: 302 AFLSRYRDMNFLKSHGRDNARFIRKQ-----DLDRLFLECDTHMWRLGDRRIPEGIAV-- 354

Query: 233 EDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYK 292
                 + GS W +L+R F EY     D+L   +  +Y+  +   E +F TV+ NS  + 
Sbjct: 355 ------DGGSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSP-HC 407

Query: 293 NTTANHDLHYITWDTPPKQHPRSLGLK--------------------DFRRMVLSSRP-- 330
           +T  +++L    W+       R LG K                    DF R   ++RP  
Sbjct: 408 DTMVDNNLRITNWN-------RKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTF 460

Query: 331 FARKFKQ--NSPVLDKID 346
           FARKF+   N  ++ ++D
Sbjct: 461 FARKFEAIVNQEIIGQLD 478

Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6

>sp\|Q5QQ56\|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ50\|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ57\|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q86Y38\|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1	Back alignment and function description

>sp\|Q5QQ49\|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q9H1B5\|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2	Back alignment and function description

>sp\|Q5QQ51\|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q9EPL0\|XYLT2_MOUSE Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3	Back alignment and function description

>sp\|Q811B1\|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		411
60657604		397	secondary cell wall-related glycosyltran	0.963	0.997	0.737	1e-178
356571785		399	PREDICTED: xylosyltransferase 1-like [Gl	0.968	0.997	0.716	1e-175
356560347		391	PREDICTED: xylosyltransferase 1-like [Gl	0.941	0.989	0.707	1e-168
357508863		399	Xylosyltransferase [Medicago truncatula]	0.970	1.0	0.690	1e-168
224123904		363	predicted protein [Populus trichocarpa]	0.883	1.0	0.700	1e-163
449453814		401	PREDICTED: xylosyltransferase 1-like [Cu	0.878	0.900	0.719	1e-161
225439217		391	PREDICTED: xylosyltransferase 1-like [Vi	0.868	0.913	0.739	1e-159
297833046		378	hypothetical protein ARALYDRAFT_317250 [	0.909	0.989	0.637	1e-140
15228609		378	Core-2/I-branching beta-1,6-N-acetylgluc	0.834	0.907	0.675	1e-137
13605509		378	AT3g03690/T12J13_3 [Arabidopsis thaliana	0.834	0.907	0.672	1e-137

>gi\|60657604\|gb\|AAX33323.1\| secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/412 (73%), Positives = 352/412 (85%), Gaps = 16/412 (3%)

Query: 1   MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAY 60
           MGIK+F+  FM+TS+    +YI  P K  T + K+NP+I     + +  +   YPVTFAY
Sbjct: 1   MGIKLFMISFMVTSILFSLLYI--PTKLTTPIAKYNPVI----NLNMLKDLKPYPVTFAY 54

Query: 61  LLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYI 120
           L+SAS+GD  +L R L ALYHPGN+YLIH+D +APEKE REIAEFV+++PVF +V NV+I
Sbjct: 55  LISASRGDAKRLMRVLKALYHPGNYYLIHVDSDAPEKEHREIAEFVSSDPVFGLVGNVWI 114

Query: 121 VGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRD 180
           VGKPNLVTYRGPTMLATTLHA+A+LLR CKWDWFINLSASDYPLVTQDDLI+AFS LPR+
Sbjct: 115 VGKPNLVTYRGPTMLATTLHAMAILLRTCKWDWFINLSASDYPLVTQDDLIDAFSTLPRN 174

Query: 181 LNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEH 240
           LNFIQHSS LGWK+NKRAKPI+IDPGLYSLNKSEIWWVIKQRS+P+AFKLYT        
Sbjct: 175 LNFIQHSSRLGWKLNKRAKPIMIDPGLYSLNKSEIWWVIKQRSLPTAFKLYT-------- 226

Query: 241 GSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDL 300
           GSAWTILSR FAEY I+GWDNLPR+LLLYYTNFVSSPEGYFQTVICNSEDYKNTT NHDL
Sbjct: 227 GSAWTILSRSFAEYSIVGWDNLPRTLLLYYTNFVSSPEGYFQTVICNSEDYKNTTVNHDL 286

Query: 301 HYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNG 360
           HYITWDTPPKQHPRSLG+KD+RRM+LSSRPFARKFK+N PVLDKIDR+LLKR++ ++ +G
Sbjct: 287 HYITWDTPPKQHPRSLGVKDYRRMILSSRPFARKFKRNDPVLDKIDRELLKRYKGQFAHG 346

Query: 361 GWCSES-ERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR 411
           GWC+ S +R   CSG Q+ NYGVLRPGPGSRRL+NLLTKL+  +NF KRQCR
Sbjct: 347 GWCARSGKRHGTCSGLQNGNYGVLRPGPGSRRLQNLLTKLLPEKNF-KRQCR 397

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356571785\|ref\|XP_003554053.1\| PREDICTED: xylosyltransferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356560347\|ref\|XP_003548454.1\| PREDICTED: xylosyltransferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357508863\|ref\|XP_003624720.1\| Xylosyltransferase [Medicago truncatula] gi\|355499735\|gb\|AES80938.1\| Xylosyltransferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224123904\|ref\|XP_002319193.1\| predicted protein [Populus trichocarpa] gi\|222857569\|gb\|EEE95116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449453814\|ref\|XP_004144651.1\| PREDICTED: xylosyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225439217\|ref\|XP_002270685.1\| PREDICTED: xylosyltransferase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297833046\|ref\|XP_002884405.1\| hypothetical protein ARALYDRAFT_317250 [Arabidopsis lyrata subsp. lyrata] gi\|297330245\|gb\|EFH60664.1\| hypothetical protein ARALYDRAFT_317250 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15228609\|ref\|NP_187019.1\| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi\|6091754\|gb\|AAF03464.1\|AC009327_3 hypothetical protein [Arabidopsis thaliana] gi\|332640451\|gb\|AEE73972.1\| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|13605509\|gb\|AAK32748.1\|AF361580_1 AT3g03690/T12J13_3 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		411
TAIR\|locus:2096399		378	UNE7 "unfertilized embryo sac	0.832	0.904	0.676	9.2e-139
TAIR\|locus:2178047		447	AT5G39990 [Arabidopsis thalian	0.963	0.885	0.521	2.4e-115
TAIR\|locus:2124009		421	AT4G27480 [Arabidopsis thalian	0.854	0.833	0.559	1.2e-111
TAIR\|locus:2147880		434	AT5G15050 [Arabidopsis thalian	0.890	0.843	0.551	1.4e-110
TAIR\|locus:2087125		424	AT3G15350 [Arabidopsis thalian	0.829	0.804	0.568	1.5e-108
TAIR\|locus:2125502		448	AT4G03340 [Arabidopsis thalian	0.868	0.796	0.542	2.1e-107
TAIR\|locus:2020748		447	AT1G03520 [Arabidopsis thalian	0.836	0.769	0.551	4.4e-107
TAIR\|locus:2037065		423	AT1G53100 [Arabidopsis thalian	0.951	0.924	0.505	9.8e-103
TAIR\|locus:505006303		384	AT2G37585 [Arabidopsis thalian	0.776	0.830	0.513	1e-92
TAIR\|locus:2026356		395	AT1G71070 [Arabidopsis thalian	0.856	0.891	0.430	1e-84

TAIR\|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1277 (454.6 bits), Expect = 9.2e-139, Sum P(2) = 9.2e-139
 Identities = 241/356 (67%), Positives = 287/356 (80%)

Query:     1 MGIKVFVTL-FMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFA 59
             M IK  + + F LTS+    +YI    K   +  K   + + SN+    ++NS+ P  FA
Sbjct:     1 MAIKKLLMISFSLTSLLFSLLYIIPTTKTLFTSSKIPSLPLESNQ----NSNSTLPC-FA 55

Query:    60 YLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVY 119
             YL+SASKGD  KLKR L +LYH  NHYLIH+D EAPE+E  E+  FVA EP+F+   NV 
Sbjct:    56 YLISASKGDAGKLKRLLRSLYHRRNHYLIHLDLEAPEEEHLEMIRFVAGEPLFQPEGNVM 115

Query:   120 IVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPR 179
             IVGKPNLVTYRGPTMLATTLHA+A+LLRCC+WDWFINLSASDYPLVTQDDLI AFS+LPR
Sbjct:   116 IVGKPNLVTYRGPTMLATTLHAMALLLRCCRWDWFINLSASDYPLVTQDDLIYAFSELPR 175

Query:   180 DLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKE 239
             DLNFIQH+S LGWKMNKR KPIIIDPGLYSLNKSEIWWV  QRS+P++FKL+T       
Sbjct:   176 DLNFIQHTSRLGWKMNKRGKPIIIDPGLYSLNKSEIWWVSNQRSLPTSFKLFT------- 228

Query:   240 HGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHD 299
              GSAWT LSRPFAEYCI+G+DNLPR+LLLYYTNFVSSPEGYFQT+ICNS+++KNTT NHD
Sbjct:   229 -GSAWTFLSRPFAEYCIIGYDNLPRTLLLYYTNFVSSPEGYFQTLICNSDEFKNTTVNHD 287

Query:   300 LHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRR 355
             LHYI WD PPKQHP+ LG +D+R+MV+S+RPFARKFK N PVL++IDR++L+R R+
Sbjct:   288 LHYIAWDNPPKQHPKILGTRDYRKMVMSNRPFARKFKSNDPVLNRIDREILRRKRK 343

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

TAIR\|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.2.26	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIII0301	hypothetical protein (363 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		411
PLN03183		421	PLN03183, PLN03183, acetylglucosaminyltransferase	1e-175
pfam02485		242	pfam02485, Branch, Core-2/I-Branching enzyme	1e-72

>gnl\|CDD\|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

 Score =  494 bits (1273), Expect = e-175
 Identities = 210/355 (59%), Positives = 263/355 (74%), Gaps = 14/355 (3%)

Query: 58  FAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN 117
           FAYL+S SKGD  KL R L ALYHP N Y++H+D E+P +E+ E+A  V N+P+F  V N
Sbjct: 80  FAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGN 139

Query: 118 VYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSD 176
           VY++ K NLVTYRGPTM+A TLHA A+LL+  K WDWFINLSASDYPLVTQDDLI  FS 
Sbjct: 140 VYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFST 199

Query: 177 LPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTEDTH 236
           L R+LNFI+H+S LGWK  KRA P+IIDPGLYS NKS+I+WV  +RS+P+AFKL+T    
Sbjct: 200 LDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRRSLPTAFKLFT---- 255

Query: 237 PKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTA 296
               GSAW +LSR F EYCI GWDNLPR+LL+YYTNFVSSPEGYF TVICN  ++  T  
Sbjct: 256 ----GSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAV 311

Query: 297 NHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRR 356
           NHDLHYI+WD PPKQHP +L L D  +M+ S   FARKF+++ PVLDKID++LL R    
Sbjct: 312 NHDLHYISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGS 371

Query: 357 YTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR 411
           +T GGWCS   +   CS  +  +   ++PGPG++RLK L+++L+      + QC+
Sbjct: 372 FTPGGWCSGKPK---CS--RVGDPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421

Length = 421

>gnl\|CDD\|217062 pfam02485, Branch, Core-2/I-Branching enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		411
PLN03183		421	acetylglucosaminyltransferase family protein; Prov	100.0
KOG0799		439	consensus Branching enzyme [Carbohydrate transport	100.0
PF02485		244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	100.0
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	93.87
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	90.84
PRK11204		420	N-glycosyltransferase; Provisional	89.55
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	87.28
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	85.7
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	82.89
PRK10063		248	putative glycosyl transferase; Provisional	80.74
PRK14583		444	hmsR N-glycosyltransferase; Provisional	80.41

>PLN03183 acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.6e-114  Score=878.60  Aligned_cols=397  Identities=54%  Similarity=0.976  Sum_probs=363.0

Q ss_pred             CccchhHHHHHHHHHHHHHHHhcCCc-cccCCC--------------CCCCccccccccccC---CCCCCCCCeEEEEEE
Q 015224            2 GIKVFVTLFMLTSVFLCFVYISTPAK-RFTSLY--------------KFNPIIMTSNKITLK---SNNSSYPVTFAYLLS   63 (411)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~kiAyLI~   63 (411)
                      .+|||++|++++++++++|+++++++ +.++.+              ..+.+.++++++.++   .+.++.||||||||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~   85 (421)
T PLN03183          6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS   85 (421)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence            47899999999999998876643321 111110              111223455555431   234556999999999


Q ss_pred             ecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHHHHHHH
Q 015224           64 ASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIA  143 (411)
Q Consensus        64 ~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~  143 (411)
                      ||+||.+|++|||++||||+|+||||||+||+..++.++++.++..|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus        86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~  165 (421)
T PLN03183         86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA  165 (421)
T ss_pred             ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence            99889999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHhCCC-CcEEEEccCCcccccChhhHHHHHhcCCCCcceEecccCCCccccccccceeeCCCccccCCccceeeeccC
Q 015224          144 MLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQR  222 (411)
Q Consensus       144 ~lL~~~~-wdyfi~LSgsDyPLkt~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~~~k~~~~~~~~~R  222 (411)
                      .||+.+. |||||||||+||||+||+||++.|++.|+|+|||++++..+|++.+|+++++++||+|..+++.++|.+++|
T Consensus       166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R  245 (421)
T PLN03183        166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR  245 (421)
T ss_pred             HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence            9999777 999999999999999999987777779999999999988999999999999999999998888889999999


Q ss_pred             CCCccceEEeeCCCCCCCCcceEEecHHHHHHhhhccCCChHHHHHHhcCCCCCCchhHHHHhhcCCCCCCcccCCCeee
Q 015224          223 SIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHY  302 (411)
Q Consensus       223 ~lP~~~~l~~~~~~~~~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~~~~~pDE~fFqTvl~Ns~~f~~t~vn~~LRy  302 (411)
                      .+|.++++|+        ||+||+|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+||||
T Consensus       246 ~~P~~~~lf~--------GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRy  317 (421)
T PLN03183        246 SLPTAFKLFT--------GSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHY  317 (421)
T ss_pred             cCCccccccC--------CCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeE
Confidence            9999999999        99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCCHHHHHHHhcCCccEEeccCCChHHHHHHHHHHhcccCCCcccCccccCCCCCCCCcccccCCCCc
Q 015224          303 ITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGV  382 (411)
Q Consensus       303 i~W~~~~~~~P~~l~~~D~~~l~~S~a~FARKF~~d~~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~c~~~~~~~~~  382 (411)
                      |+|++++++||++|+.+||++|++|+++|||||+.|++|||+||++|++|..++++|||||.|    .||||+|||+ ++
T Consensus       318 I~W~~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~----~~~c~~~~~~-~~  392 (421)
T PLN03183        318 ISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG----KPKCSRVGDP-AK  392 (421)
T ss_pred             EecCCCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC----CCcccccCCc-Cc
Confidence            999999889999999999999999999999999999999999999999999999999999987    5699999999 99


Q ss_pred             cCCCchhHHHHHHHHHhhcccCCcCCCCC
Q 015224          383 LRPGPGSRRLKNLLTKLISARNFTKRQCR  411 (411)
Q Consensus       383 ~~pg~~~~~~~~~~~~~~~~~~~~~~~~~  411 (411)
                      |||||||+||++||++||++++||++||+
T Consensus       393 ~~p~~~~~~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        393 IKPGPGAQRLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             cCCCcHHHHHHHHHHHHhchhccccccCC
Confidence            99999999999999999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>PRK10063 putative glycosyl transferase; Provisional	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		411
3otk_A		391	Structure And Mechanisim Of Core 2 Beta1,6-N- Acety		1e-06
2gak_A		391	X-ray Crystal Structure Of Murine Leukocyte-type Co		4e-06

>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391

Back alignment and structure

Iteration: 1

Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 7/101 (6%) Query: 72 LKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 L R L A+Y P N Y IH+DR+A E + A + + +NV++ + V Y Sbjct: 99 LDRLLRAIYMPQNFYCIHVDRKAEE------SFLAAVQGIASCFDNVFVASQLESVVYAS 152 Query: 132 PTMLATTLHAIAMLLRC-CKWDWFINLSASDYPLVTQDDLI 171 T + L+ + L R W + INLS D+P+ T +++ Sbjct: 153 WTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIV 193

PyMOL of 3otk

>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		411
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	8e-57
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391	Back alignment and structure

 Score =  190 bits (484), Expect = 8e-57
 Identities = 64/335 (19%), Positives = 115/335 (34%), Gaps = 55/335 (16%)

Query: 46  TLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEF 105
            L      +P+  AY +         L R L A+Y P N Y IH+DR+A E     +   
Sbjct: 76  PLTKEEVGFPI--AYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAV--- 129

Query: 106 VANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLR-CCKWDWFINLSASDYPL 164
              + +    +NV++  +   V Y   T +   L+ +  L R    W + INL   D+P+
Sbjct: 130 ---QGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPI 186

Query: 165 VTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSI 224
            T  +++        + N          +   + +  ++D  L +         I +   
Sbjct: 187 KTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTG-------IVKAPP 239

Query: 225 PSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTV 284
           P    L+         GSA+ +++R +  Y +   +N     L+ +     SP+ +    
Sbjct: 240 PLKTPLF--------SGSAYFVVTREYVGYVL---ENENIQKLMEWAQDTYSPDEFLWAT 288

Query: 285 ICNSED----------YKNTTANHDLHYITWD-----------TPPKQHPRS-----LGL 318
           I    +          Y  +  N    ++ W             PP            G 
Sbjct: 289 IQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGA 348

Query: 319 KDFRRMVLSSRPFARKFKQN-SPVLDKIDRDLLKR 352
            D   M+     FA KF  +  P   +   + L+R
Sbjct: 349 GDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRR 383

PyMOL of 2gak

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		411
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	100.0
3bcv_A		240	Putative glycosyltransferase protein; protein stru	84.21

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*	Back alignment and structure

Probab=100.00  E-value=3e-63  Score=505.56  Aligned_cols=278  Identities=22%  Similarity=0.339  Sum_probs=237.6

Q ss_pred             CCCCeEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCc
Q 015224           53 SYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP  132 (411)
Q Consensus        53 ~~~~kiAyLI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~  132 (411)
                      +.+|||||+|++|+ |+++++||++++|||+|.||||+|+|++..+++.+.+..      .+++||+|++++..|.|||+
T Consensus        81 e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~------~~f~NV~v~~~~~~v~WGg~  153 (391)
T 2gak_A           81 EVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIA------SCFDNVFVASQLESVVYASW  153 (391)
T ss_dssp             HHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHH------HTCTTEEECSSCCCCCTTSH
T ss_pred             ccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHH------hcCCCEEEeccCcccccCCc
Confidence            34699999999998 999999999999999999999999999988777765432      47899999999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCC-CcEEEEccCCcccccChhhHHHHHhcCCCCcceEecccCCCcccccccc--ceeeCCCccc
Q 015224          133 TMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAK--PIIIDPGLYS  209 (411)
Q Consensus       133 S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPLkt~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~--~~i~dpgly~  209 (411)
                      |||+|+++||+.||+... |||||||||+||||+|+++|.++|+.+ +|+|||++....+|++. |++  +...+++++ 
T Consensus       154 S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~-  230 (391)
T 2gak_A          154 TRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT-  230 (391)
T ss_dssp             HHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE-
T ss_pred             hHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee-
Confidence            999999999999999774 999999999999999999999999864 78999999888888753 443  333344321 


Q ss_pred             cCCccceeeeccCCCCccceEEeeCCCCCCCCcceEEecHHHHHHhhhccCCChHHHHHHhcCCCCCCchhHHHHhhcC-
Q 015224          210 LNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNS-  288 (411)
Q Consensus       210 ~~k~~~~~~~~~R~lP~~~~l~~~~~~~~~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~~~~~pDE~fFqTvl~Ns-  288 (411)
                            .+..+++.+|.++++|+        |||||+|||+||+||++  |+.++.+++||+++++|||+||||++.|+ 
T Consensus       231 ------~~~~~k~~~P~~~~~~~--------GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~  294 (391)
T 2gak_A          231 ------NTGIVKAPPPLKTPLFS--------GSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPE  294 (391)
T ss_dssp             ------EEEEECCCCSCSSCCEE--------CCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTT
T ss_pred             ------eecccccCCccccceec--------ccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccC
Confidence                  34456788898999999        99999999999999998  55678899999999999999999998764 


Q ss_pred             --------CCCCCcccCCCeeeEecCCCCC------CCCC----------CCCHHHHHHHhcCCccEEeccCC--ChHHH
Q 015224          289 --------EDYKNTTANHDLHYITWDTPPK------QHPR----------SLGLKDFRRMVLSSRPFARKFKQ--NSPVL  342 (411)
Q Consensus       289 --------~~f~~t~vn~~LRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~a~FARKF~~--d~~vl  342 (411)
                              ..|+++++|+++|||+|+++.+      .||.          +|+.+|++.|.+|+++|||||++  |++|+
T Consensus       295 ~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l  374 (391)
T 2gak_A          295 VPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAI  374 (391)
T ss_dssp             STTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHH
T ss_pred             CCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHH
Confidence                    2345566899999999985322      2443          89999999999999999999998  78999


Q ss_pred             HHHHHHHhcccCCC
Q 015224          343 DKIDRDLLKRHRRR  356 (411)
Q Consensus       343 d~Id~~ll~r~~~~  356 (411)
                      +|||+.|.+|...+
T Consensus       375 ~~l~~~l~~r~~~~  388 (391)
T 2gak_A          375 QCLDEHLRRKALEN  388 (391)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhhhhcc
Confidence            99999999887543

PyMOL of 2gak

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		411
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	84.87

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.87  E-value=1.3  Score=37.77  Aligned_cols=115  Identities=9%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             CeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeee---e
Q 015224           56 VTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT---Y  129 (411)
Q Consensus        56 ~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~---W  129 (411)
                      |++..+|.+++ ....|++.|+.+-   .+.-.+ |=+|-.|++...+.|+++.       .-.+|+++.......   -
T Consensus         1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~~ei-ivvdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFEL-FIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEE-EEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence            68899999998 4678888888874   233344 5555567777666555432       234577665332110   0


Q ss_pred             cCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHHhcCCCCcceE
Q 015224          130 RGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSDLPRDLNFI  184 (411)
Q Consensus       130 gg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~fs~~~~~~nFI  184 (411)
                      ...+.-.    ++..+++.+.-||++.|.+.|++... .+.+.++|.. +.+..++
T Consensus        72 ~~~g~~~----a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~-~~~~~~v  122 (255)
T d1qg8a_          72 EKTRYAA----LINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVI  122 (255)
T ss_dssp             SSCHHHH----HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEE
T ss_pred             ccchhcc----cccccccccccccccccccccccccchHHHHHHHHHh-CCCCCeE
Confidence            1222222    22334555567999999999998754 3455566643 3345555

PyMOL of d1qg8a_