Citrus Sinensis ID: 015225
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 411 | 2.2.26 [Sep-21-2011] | |||||||
| Q86HG0 | 412 | Mannose-1-phosphate guany | yes | no | 0.968 | 0.966 | 0.455 | 1e-104 | |
| Q0VFM6 | 421 | Mannose-1-phosphate guany | yes | no | 0.963 | 0.940 | 0.446 | 1e-101 | |
| Q7SXP8 | 422 | Mannose-1-phosphate guany | yes | no | 0.965 | 0.940 | 0.443 | 1e-100 | |
| Q6GMK8 | 422 | Mannose-1-phosphate guany | no | no | 0.965 | 0.940 | 0.429 | 3e-99 | |
| Q6DKE9 | 421 | Mannose-1-phosphate guany | N/A | no | 0.963 | 0.940 | 0.439 | 7e-99 | |
| Q66KG5 | 426 | Mannose-1-phosphate guany | N/A | no | 0.975 | 0.941 | 0.441 | 1e-98 | |
| Q922H4 | 420 | Mannose-1-phosphate guany | yes | no | 0.963 | 0.942 | 0.435 | 2e-97 | |
| B0CM52 | 420 | Mannose-1-phosphate guany | N/A | no | 0.965 | 0.945 | 0.438 | 4e-97 | |
| Q96IJ6 | 420 | Mannose-1-phosphate guany | yes | no | 0.965 | 0.945 | 0.438 | 5e-97 | |
| Q5XIC1 | 420 | Mannose-1-phosphate guany | yes | no | 0.963 | 0.942 | 0.430 | 4e-96 |
| >sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/413 (45%), Positives = 267/413 (64%), Gaps = 15/413 (3%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+VGGP+KGTRFRPLS + PK LFP+AG+PMI H I AC ++ N+ +I LIGF++E
Sbjct: 8 AIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESV 67
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ ++S S +L V +RY+ E+K G+AGGLY+FRD+I+E PS I +L+ D+CC+FPL
Sbjct: 68 LSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLN 127
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
DLL+ HK++G T++ ++ + A+Q+G L+ D T ELLHY EKPETFVS+LINCGVY
Sbjct: 128 DLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLINCGVY 187
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245
F+P FF I + D Q + + + + V+ +RL+QDI PLAG +
Sbjct: 188 CFSPQFFDVIGKTMI---DLKTSGQNITTDYPEITRKGFDVERLRLEQDIFVPLAGTGFI 244
Query: 246 YTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKV 305
Y + FW QIK G S+ C LYL F T P++L GN I G+V I +A V
Sbjct: 245 SVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGN-----NIIGNVIIDSTASV 299
Query: 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG 365
P+A IGP+V I NV++G GVR+I I+LD EIK++A ++ SIIGW+S +G WAR++G
Sbjct: 300 DPSAIIGPDVYIGPNVKIGKGVRVIHSIILDQTEIKDHACIIYSIIGWQSLIGVWARIEG 359
Query: 366 NGDY-------NAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
+Y + + G+TI G E++V N IV+P+K L+ + EIIL
Sbjct: 360 IPNYTPFLYSQDKRRGVTIFGAGAQANGEIIVSNCIVMPHKQLDRNYNNEIIL 412
|
Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3 |
| >sp|Q0VFM6|GMPPA_XENTR Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 274/428 (64%), Gaps = 32/428 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++PNL +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
+ ++ E KV +RYL+E G+ GG+Y+FRD I+ P ++N DVC +FPL
Sbjct: 64 ALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSAFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAH--QFGELIADPNTKELLHYTEKPETFVSDLINC 182
+L+ HK++GG + +++ +A + +G ++A+ T+E+LHY EKP TFVSD+INC
Sbjct: 124 VPMLDFHKQHGGSQSYVILGTTANRSQSLNYGCIVANGETQEVLHYVEKPGTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+F+P F I V + + + SS++ RT + +RL+QD+ + LAG+
Sbjct: 184 GIYLFSPSIFQHIAEVFQRNQQELQLEENSSWQ------RT---EVIRLEQDVFTTLAGR 234
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
+LY Y+T W QIK+ G ++ S LYL+ + T P+ LAS TI G+VYIHP+
Sbjct: 235 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGSTHPERLASTKE-GGPTIRGNVYIHPT 293
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A V P+A +GPNVSI V VGAGVR+ IVL +++++ VLN+I+GW S++GRWAR
Sbjct: 294 ANVDPSAVLGPNVSIGMGVTVGAGVRIRESIVLHGAVLQDHSCVLNTIVGWDSTVGRWAR 353
Query: 363 VQG-------NGDYN----------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G N Y+ KL ITILG V++ EVV++NSIVLP+K L+
Sbjct: 354 VEGTPSDPNPNDPYSKIDSETLFREGKLTPSITILGCNVSIPAEVVILNSIVLPHKELSR 413
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 414 SFKNQIIL 421
|
Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q7SXP8|GMPAB_DANRE Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 270/428 (63%), Gaps = 31/428 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-ER 64
A+I++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++P++ +I LIGFY+
Sbjct: 4 AIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPND 63
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
E ++ S E K+P+RYL+E G+ GG+Y+FRD I+ P+ L+N DVC FPL
Sbjct: 64 ELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPL 123
Query: 125 PDLLEAHKRYG--GMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINC 182
++L+ H+++G G +L + + +G ++ + T E+LH+ EKP TFVSD+INC
Sbjct: 124 LEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+FTPD F I G + R + I+ E L R +P + VRL+QDI + LAG+
Sbjct: 184 GIYLFTPDIFAHI-GKVFQRNQQEKIQ-----EELTHG-RQMP-EVVRLEQDIFTALAGQ 235
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
K+L+ Y+T FW QIK+ G ++ S LYL + T P+ LA+ G T I GDVYIHP+
Sbjct: 236 KKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQGGT-PKITGDVYIHPT 294
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A + P+A +GPNVSI V +G GVR+ I+L ++++ VLNSI+GW S++G+WAR
Sbjct: 295 ANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVGKWAR 354
Query: 363 VQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G D AK+ ITILG V + EV++ NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGGLTPSITILGCNVNIPSEVIIRNSIVLPHKDLNR 414
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 415 SFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6GMK8|GMPAA_DANRE Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-ER 64
AVI++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++PN+ +I LIGFY+
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNE 63
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
E ++S + K+ +RYL+E G+ GG+Y+FRD I+ P ++N DVC FPL
Sbjct: 64 ELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAH--QFGELIADPNTKELLHYTEKPETFVSDLINC 182
P++L+ K +G + +++ +A +G ++ + T E+LHY EKP TFVSD+INC
Sbjct: 124 PEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+FTP+ F I V + + + S+ A + +RL+QDI + LAG+
Sbjct: 184 GIYLFTPEIFQHIGSVFQKNQQEMLLEEQSN--GWHRA------EVIRLEQDIFTALAGQ 235
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
+LY Y+T FW QIK+ G ++ S LYL + T P+ LA+ N A G+VYIHP+
Sbjct: 236 GKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLAT-NTEGGAKTRGNVYIHPT 294
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A + PTA +GPNVSI V +GAGVR+ I+L +++++ VLNSI+GW+S++G+WAR
Sbjct: 295 ANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWAR 354
Query: 363 VQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G D AK+ ITILG V + EV+++NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGKLTPSITILGCNVNIPSEVIILNSIVLPHKDLNR 414
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 415 SFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6DKE9|GMPAA_XENLA Mannose-1-phosphate guanyltransferase alpha-A OS=Xenopus laevis GN=gmppa-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 269/428 (62%), Gaps = 32/428 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++PNL +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ E KV +RYL+E G+ GG+Y+FRD I+ P ++N DVC FPL
Sbjct: 64 ALNSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAH--QFGELIADPNTKELLHYTEKPETFVSDLINC 182
+L+ HK++GG + +++ +A +G ++A+ +T+E+LHY EKP TFVSD+INC
Sbjct: 124 VSMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVANRDTQEVLHYVEKPGTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+F+P F I V + + + SS++ + + +RL+QD+ S LAG+
Sbjct: 184 GIYLFSPSIFQHIAEVFQQNQQELQLEENSSWQRM---------EVIRLEQDVFSTLAGR 234
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
+LY Y+T W QIK+ G ++ S LYL+ + T P+ LAS TI G+VYIHP+
Sbjct: 235 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGTTHPERLASTKE-GGPTIRGNVYIHPT 293
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A V P+A +GPNVSI V V AGVR+ I+L +++++ VLN+I+GW S +GRWAR
Sbjct: 294 ANVDPSAVLGPNVSIGMGVTVAAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRWAR 353
Query: 363 VQG-------NGDY----------NAKL--GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G N Y + KL ITILG V++ EVV++NSIVLP+K L+
Sbjct: 354 VEGTPSDPNPNDPYSKIDSETLFRDGKLTPSITILGCNVSIPAEVVILNSIVLPHKELSR 413
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 414 SFKNQIIL 421
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q66KG5|GMPAB_XENLA Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 269/428 (62%), Gaps = 27/428 (6%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++PNL +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
+ ++ E KV +RYL+E G+ GG+Y+FRD I+ P ++N DVC FPL
Sbjct: 64 ALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAH--QFGELIADPNTKELLHYTEKPETFVSDLINC 182
+L+ HK++GG + +++ +A +G ++++ +T+E+LHY EKP TFVSD+INC
Sbjct: 124 VPMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVSNGDTQEVLHYVEKPGTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+F+P F I V + + S E S RT + +RL+QD+ + LAG
Sbjct: 184 GIYLFSPSIFQHIAEVFQRNQLELQLFSCIS-EENSSWQRT---EVIRLEQDVFTTLAGH 239
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
+LY Y+T W QIK+ G ++ S LYL+ + T P+ LAS TI G+VYIHP+
Sbjct: 240 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYSTTHPERLASTKE-GGPTIRGNVYIHPT 298
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A V P+A +GPNVS+ V VGAGVR+ I+L +++++ VLN+I+GW S +GRWAR
Sbjct: 299 ANVDPSAVLGPNVSVGMGVTVGAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRWAR 358
Query: 363 VQG-------NGDYN----------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G N Y+ KL ITILG V++ EVV++NSIVLP+K L+
Sbjct: 359 VEGTPSDPNPNDPYSKIDSETLFREGKLTPSITILGCNVSIPAEVVILNSIVLPHKELSR 418
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 419 SFKNQIIL 426
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q922H4|GMPPA_MOUSE Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/427 (43%), Positives = 259/427 (60%), Gaps = 31/427 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ P +LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+LEAH+R +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP-VDFVRLDQDILSPLAGKK 243
Y+F+P+ ++ V + L+ + + P +RL+QD+ S LAG+
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDGQ---------LEESPGSWPGAGTIRLEQDVFSALAGQG 234
Query: 244 QLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSA 303
Q+Y + T W QIK+ G +L S LYL ++IT P+ LA + I G+VYIHP+A
Sbjct: 235 QIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLAR-HTPGGPRIRGNVYIHPTA 293
Query: 304 KVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARV 363
KV P+A +GPNVSI V +G GVRL IVL ++E+ VL+SI+GW S++GRWARV
Sbjct: 294 KVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARV 353
Query: 364 QGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 404
+G D A++ ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 354 EGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413
Query: 405 VQEEIIL 411
+IIL
Sbjct: 414 FTNQIIL 420
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|B0CM52|GMPPA_PAPAN Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 187/426 (43%), Positives = 259/426 (60%), Gaps = 29/426 (6%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ +P +LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+LEAH+R +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQ 244
Y+F+P+ ++ V + Q+ L T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDG---QLEDSPGLWPGAGT-----IRLEQDVFSALAGQGQ 235
Query: 245 LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAK 304
+Y + T W QIK+ G +L S LYL+ ++ T P+ LA + I G+VYIHP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAK-HTPGGPRIRGNVYIHPTAK 294
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
V P+A +GPNVSI V VG GVRL IVL ++E+ VL+SI+GW S++GRWARV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 365 GN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVSV 405
G D A++ ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 406 QEEIIL 411
+IIL
Sbjct: 415 TNQIIL 420
|
Papio anubis (taxid: 9555) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q96IJ6|GMPPA_HUMAN Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 187/426 (43%), Positives = 259/426 (60%), Gaps = 29/426 (6%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ +P +LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+LEAH+R +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQ 244
Y+F+P+ ++ V + Q+ L T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDG---QLEDSPGLWPGAGT-----IRLEQDVFSALAGQGQ 235
Query: 245 LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAK 304
+Y + T W QIK+ G +L S LYL+ ++ T P+ LA + I G+VYIHP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAK-HTPGGPWIRGNVYIHPTAK 294
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
V P+A +GPNVSI V VG GVRL IVL ++E+ VL+SI+GW S++GRWARV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 365 GN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVSV 405
G D A++ ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 355 GTPSDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 406 QEEIIL 411
+IIL
Sbjct: 415 TNQIIL 420
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q5XIC1|GMPPA_RAT Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 184/427 (43%), Positives = 258/427 (60%), Gaps = 31/427 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ P +LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+L+AH+ +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP-VDFVRLDQDILSPLAGKK 243
Y+F+P+ ++ V + L+ + + P +RL+QD+ S LAG+
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDGQ---------LEESPGSWPGAGTIRLEQDVFSALAGQG 234
Query: 244 QLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSA 303
Q+Y + T W QIK+ G +L S LYL ++IT P+ LA + I G+VYIHP+A
Sbjct: 235 QIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLAR-HTAGGPRIRGNVYIHPTA 293
Query: 304 KVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARV 363
KV P+A +GPNVSI V +G GVRL IVL ++E+ VL+SI+GW S++GRWARV
Sbjct: 294 KVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARV 353
Query: 364 QGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 404
+G D A++ ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 354 EGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413
Query: 405 VQEEIIL 411
+IIL
Sbjct: 414 FTNQIIL 420
|
Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 411 | ||||||
| 225452650 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.987 | 0.858 | 0.0 | |
| 296087766 | 418 | unnamed protein product [Vitis vinifera] | 0.997 | 0.980 | 0.852 | 0.0 | |
| 449459434 | 414 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.990 | 0.846 | 0.0 | |
| 357496183 | 421 | Mannose-1-phosphate guanyltransferase al | 0.997 | 0.973 | 0.844 | 0.0 | |
| 356570143 | 414 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.990 | 0.848 | 0.0 | |
| 359488770 | 409 | PREDICTED: mannose-1-phosphate guanyltra | 0.982 | 0.987 | 0.841 | 0.0 | |
| 255540799 | 415 | mannose-1-phosphate guanyltransferase, p | 0.997 | 0.987 | 0.851 | 0.0 | |
| 356516712 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.987 | 0.814 | 0.0 | |
| 225457154 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.987 | 0.846 | 0.0 | |
| 356508632 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.987 | 0.809 | 0.0 |
| >gi|225452650|ref|XP_002281959.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/410 (85%), Positives = 380/410 (92%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFNT KPLFPLAGQPM+ HPISACKRIPNLAQIFL+GFY
Sbjct: 6 EKVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EERE ALYVSS+SNELKVP+RYLKEDKPHGSAGGLYYFRD+IME+ PSHI LLNCDVCC+
Sbjct: 66 EERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLNCDVCCT 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLPD+L H+R GGMGT+LVIKVSAESA+QFGEL+ADP T ELLHY EKPETFVSDLIN
Sbjct: 126 FPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETFVSDLIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTPD FTAIQGV THREDRA++R+VSSFEALQSATRT P DFVRLDQDILSPLAG
Sbjct: 186 CGVYVFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLYTYET DFWEQIKTPGMSLKCSSLYLA F+ TSP LLASG+G SATI GDVYIHP
Sbjct: 246 KKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVGDVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISANVR+GAGVRL CI+LDDVEIKENAVV+++I+GWKS +G+W+
Sbjct: 306 SAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKSFIGKWS 365
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ GDYNAKLGI I+GE+VTVEDEVVVINSIVLPNK LN SVQEEIIL
Sbjct: 366 RVQAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087766|emb|CBI35022.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/413 (85%), Positives = 381/413 (92%), Gaps = 3/413 (0%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFNT KPLFPLAGQPM+ HPISACKRIPNLAQIFL+GFY
Sbjct: 6 EKVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EERE ALYVSS+SNELKVP+RYLKEDKPHGSAGGLYYFRD+IME+ PSHI LLNCDVCC+
Sbjct: 66 EERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLNCDVCCT 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLPD+L H+R GGMGT+LVIKVSAESA+QFGEL+ADP T ELLHY EKPETFVSDLIN
Sbjct: 126 FPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETFVSDLIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTPD FTAIQGV THREDRA++R+VSSFEALQSATRT P DFVRLDQDILSPLAG
Sbjct: 186 CGVYVFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLYTYET DFWEQIKTPGMSLKCSSLYLA F+ TSP LLASG+G SATI GDVYIHP
Sbjct: 246 KKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVGDVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISANVR+GAGVRL CI+LDDVEIKENAVV+++I+GWKS +G+W+
Sbjct: 306 SAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKSFIGKWS 365
Query: 362 RVQGN---GDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ + GDYNAKLGI I+GE+VTVEDEVVVINSIVLPNK LN SVQEEIIL
Sbjct: 366 RVQASLAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459434|ref|XP_004147451.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/410 (84%), Positives = 379/410 (92%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPM+ HPISACKRIPNLAQIFLIGFY
Sbjct: 5 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMVHHPISACKRIPNLAQIFLIGFY 64
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSS+SNEL++PVRYLKEDKPHGSAGG+YYFRD+I+E++PS+I LLNCDVCC+
Sbjct: 65 EEREFALYVSSLSNELRLPVRYLKEDKPHGSAGGIYYFRDIILEDSPSYIFLLNCDVCCN 124
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLPD+LEAHKRYGGMGT+LV KVSAESA+QFG L+ADP T ELLHYTEKPETFVSDLIN
Sbjct: 125 FPLPDMLEAHKRYGGMGTILVNKVSAESANQFGALVADPVTNELLHYTEKPETFVSDLIN 184
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVY FT + F IQ V HRE RAN+R+VSSFEALQSATR LP+DFVRLDQDIL+PLAG
Sbjct: 185 CGVYAFTSEIFDYIQDVSIHREGRANLRRVSSFEALQSATRNLPIDFVRLDQDILTPLAG 244
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KK+LYTYETM+FWEQIKTPGMSLKCS+LYLA F++TSP LLASGNG SATI GDVYIHP
Sbjct: 245 KKRLYTYETMEFWEQIKTPGMSLKCSALYLAQFQLTSPHLLASGNGTRSATIVGDVYIHP 304
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISANVRV GVRLISCI+LDDVEI +NAVV+NSIIGWKSS+G+W+
Sbjct: 305 SAKVHPTAKIGPNVSISANVRVAPGVRLISCIILDDVEIMDNAVVINSIIGWKSSVGKWS 364
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ NGDY KLGITILGEAV VEDEVVV NSIVLPNK LN+SV EEIIL
Sbjct: 365 RVQANGDYKDKLGITILGEAVIVEDEVVVTNSIVLPNKTLNLSVLEEIIL 414
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357496183|ref|XP_003618380.1| Mannose-1-phosphate guanyltransferase alpha-B [Medicago truncatula] gi|355493395|gb|AES74598.1| Mannose-1-phosphate guanyltransferase alpha-B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/417 (84%), Positives = 385/417 (92%), Gaps = 7/417 (1%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPM+ HPISACKRIPNLAQI+LIGF+
Sbjct: 5 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFH 64
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP----SHIILLNCD 117
EEREFALYVSSISNELK+PVRYLKEDKPHGSAGGLYYFRD+IME++P SHI LLNCD
Sbjct: 65 EEREFALYVSSISNELKLPVRYLKEDKPHGSAGGLYYFRDIIMEDSPVRNISHIFLLNCD 124
Query: 118 VCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVS 177
VCCSFPLP +L+AH +YGGMGTMLVIKVSAESA+QFGEL+ADP T ELLHYTEKPETFVS
Sbjct: 125 VCCSFPLPSMLDAHIKYGGMGTMLVIKVSAESANQFGELVADPETHELLHYTEKPETFVS 184
Query: 178 DLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILS 237
DLINCGVY+FTPD F AI+ V +RE R N+R++SSFEALQSATRTLP DFVRLDQDILS
Sbjct: 185 DLINCGVYIFTPDIFAAIEDVSINREGRGNLRRLSSFEALQSATRTLPKDFVRLDQDILS 244
Query: 238 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDV 297
PLAGKK+LYTYET DFWEQIKTPG+SLKCS LYLA F+ TSP LLASG+G +A I GDV
Sbjct: 245 PLAGKKKLYTYETNDFWEQIKTPGLSLKCSELYLAQFRYTSPHLLASGDGKKNAKIVGDV 304
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSL 357
YIHPSAKVHP+AKIGPNVSISANVRVGAGVRLI CIVLDDVE+KENAVV+NSI+GWKSSL
Sbjct: 305 YIHPSAKVHPSAKIGPNVSISANVRVGAGVRLIGCIVLDDVEVKENAVVINSIVGWKSSL 364
Query: 358 GRWARVQ---GNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
GRW+RVQ +GDY+AKLGITILGEAVTVEDEVVVINSIVLP+K+LNVSVQ+EIIL
Sbjct: 365 GRWSRVQASLADGDYSAKLGITILGEAVTVEDEVVVINSIVLPHKILNVSVQDEIIL 421
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570143|ref|XP_003553250.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/410 (84%), Positives = 375/410 (91%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFN PKPLFPLAGQPM+ HPISACK+IPNLAQIFL+GFY
Sbjct: 5 EKVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACKKIPNLAQIFLLGFY 64
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSSISNELK+PVRYLKEDKPHGSAGGLYYFRD+IME+ PSHI LLNCDVCCS
Sbjct: 65 EEREFALYVSSISNELKLPVRYLKEDKPHGSAGGLYYFRDIIMEDCPSHIFLLNCDVCCS 124
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLP +L+AHKRYGGMGTMLVIKVSAESA+QFGEL++DP T ELLHYTEKPETFVSDLIN
Sbjct: 125 FPLPSMLDAHKRYGGMGTMLVIKVSAESANQFGELVSDPTTNELLHYTEKPETFVSDLIN 184
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTPD FTAI V ++E RAN+R+VS+FE QSATRT+PVDFVRLDQDILSPLAG
Sbjct: 185 CGVYVFTPDIFTAIHDVYINQEGRANLRRVSNFETFQSATRTIPVDFVRLDQDILSPLAG 244
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLYTYET DFWEQIKTPGMSLKCS LYLA F+ TS LLASG+G ATI GDVYIHP
Sbjct: 245 KKQLYTYETTDFWEQIKTPGMSLKCSELYLAQFRYTSLDLLASGDGKKKATIVGDVYIHP 304
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHP+AK+GPNVSISANVRVGAGVRL SCI+LDDVEIKENA V NSIIGWKSSLGRW+
Sbjct: 305 SAKVHPSAKLGPNVSISANVRVGAGVRLSSCIILDDVEIKENAFVTNSIIGWKSSLGRWS 364
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
VQ +G+Y++KLG TILGEAVTVEDEVVV N IVLPNK LNV VQEEIIL
Sbjct: 365 HVQADGNYDSKLGTTILGEAVTVEDEVVVFNCIVLPNKTLNVRVQEEIIL 414
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488770|ref|XP_003633817.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/410 (84%), Positives = 374/410 (91%), Gaps = 6/410 (1%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFNT KPLFPLAGQPM+ HPISACKRIPNLAQIFL+GFY
Sbjct: 6 EKVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EERE ALYVSS+SNELKVP+RYLKEDKPHGSAGGLYYFRD+IME+ PSHI LLNCDVCC+
Sbjct: 66 EERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLNCDVCCT 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLPD+L H+R GGMGT+LVIKVSAESA+QFGEL+ADP T ELLHY EKPETFVSDLIN
Sbjct: 126 FPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETFVSDLIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTPD FTAIQGV + ++R+VSSFEALQSATRT P DFVRLDQDILSPLAG
Sbjct: 186 CGVYVFTPDIFTAIQGVFS------DLRRVSSFEALQSATRTHPTDFVRLDQDILSPLAG 239
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLYTYET DFWEQIKTPGMSLKCSSLYLA F+ TSP LLASG+G SATI GDVYIHP
Sbjct: 240 KKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVGDVYIHP 299
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISANVR+GAGVRL CI+LDDVEIKENAVV+++I+GWKS +G+W+
Sbjct: 300 SAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKSFIGKWS 359
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ GDYNAKLGI I+GE+VTVEDEVVVINSIVLPNK LN SVQEEIIL
Sbjct: 360 RVQAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 409
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540799|ref|XP_002511464.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] gi|223550579|gb|EEF52066.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/410 (85%), Positives = 381/410 (92%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLS N KPLFPLAGQPM+ HPISACKRIPNLAQI+L+GFY
Sbjct: 6 EKVVAVIMVGGPTKGTRFRPLSLNVAKPLFPLAGQPMVHHPISACKRIPNLAQIYLVGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSSISNELK+PVRYL+EDKPHGSAGGLY FRD+IME++PSHI LLNCDVCCS
Sbjct: 66 EEREFALYVSSISNELKIPVRYLREDKPHGSAGGLYNFRDLIMEDSPSHIFLLNCDVCCS 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLP++L+AH+RYGGMGT+LVIKVSAESA QFGELIADP TKELLHYTEKPETFVSDLIN
Sbjct: 126 FPLPEMLDAHRRYGGMGTILVIKVSAESASQFGELIADPVTKELLHYTEKPETFVSDLIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTPD FTAIQGV + R+DRAN+R+VSSFEALQS TR+LP DFVRLDQDILSPLAG
Sbjct: 186 CGVYVFTPDIFTAIQGVSSQRKDRANLRRVSSFEALQSTTRSLPTDFVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQ YTYET DFWEQIKTPGMSLKCS+LYLA F+ TSP LLASG+G SATI GDVYIHP
Sbjct: 246 KKQFYTYETSDFWEQIKTPGMSLKCSALYLAQFRYTSPHLLASGDGSKSATIVGDVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISAN RVG G RLISCI+LDDVE+ ENAVV+++I+GWKSS+GRW+
Sbjct: 306 SAKVHPTAKIGPNVSISANARVGPGARLISCIILDDVEVMENAVVIHAILGWKSSIGRWS 365
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ GD+N+KLGITILGEAV VEDEVVV+NSIVLPNK LNVSVQEEIIL
Sbjct: 366 RVQAAGDFNSKLGITILGEAVCVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516712|ref|XP_003527037.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/410 (81%), Positives = 380/410 (92%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
E+VVAVIMVGGPTKGTRFRPLSFN PKPLFPLAGQPM+ HPISACKRIPNLAQI+L+GFY
Sbjct: 6 ERVVAVIMVGGPTKGTRFRPLSFNVPKPLFPLAGQPMVHHPISACKRIPNLAQIYLLGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSSISNELKVPVRYLKED+PHGSAGGLY+FRD+IMEE+PSHI LLNCDVCCS
Sbjct: 66 EEREFALYVSSISNELKVPVRYLKEDRPHGSAGGLYHFRDLIMEEDPSHIFLLNCDVCCS 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLP++L+AHKRYGGMGT+LV+KVSAESA +FGEL+ADP T ELLHYTEKPETFVSD IN
Sbjct: 126 FPLPEMLDAHKRYGGMGTILVVKVSAESASEFGELVADPTTNELLHYTEKPETFVSDRIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTPD FTAI+GV T R+DRAN+R+VSSFEA+Q TR+LPV++VRLDQDILSPLAG
Sbjct: 186 CGVYVFTPDIFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPVNYVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLY YET DFWEQIKTPGMS+KCS LYLA F+ TSP LLA+G+GI A+I GDVYIHP
Sbjct: 246 KKQLYIYETNDFWEQIKTPGMSIKCSGLYLAQFRYTSPHLLANGDGIKKASITGDVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHP+AKIGP+VSISAN R+GAG RL CI+LDDVEIKENA+V ++I+GWKSS+GRWA
Sbjct: 306 SAKVHPSAKIGPSVSISANARIGAGTRLKHCIILDDVEIKENALVGHAIVGWKSSIGRWA 365
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
V+ +GDYNAKLG+TILGE+VTVEDEVVV+NSIVLP+K LN+ VQ+EI+L
Sbjct: 366 CVEASGDYNAKLGVTILGESVTVEDEVVVLNSIVLPHKTLNLGVQDEILL 415
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457154|ref|XP_002283703.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha isoform 1 [Vitis vinifera] gi|297733847|emb|CBI15094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/410 (84%), Positives = 385/410 (93%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
E+VVAVIMVGGPTKGTRFRPLS NTPKPLFPLAGQPM+ HPIS CKRIPNLAQI+L+GFY
Sbjct: 6 ERVVAVIMVGGPTKGTRFRPLSLNTPKPLFPLAGQPMVHHPISGCKRIPNLAQIYLVGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSSIS+EL+VPVRYLKEDKPHGSAGGLY FRD+IME+NPSHI+LLNCDVCCS
Sbjct: 66 EEREFALYVSSISSELRVPVRYLKEDKPHGSAGGLYNFRDLIMEDNPSHIVLLNCDVCCS 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLP++LEAH RYGGMGT+LVIKVSAESA QFGEL+ADP T ELLHYTEKPETFVSDLIN
Sbjct: 126 FPLPEMLEAHIRYGGMGTILVIKVSAESASQFGELVADPVTNELLHYTEKPETFVSDLIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVY+FTPD FTAIQGV T R++RA++R++SSFEALQSATR+LP DFVRLDQDILSPLAG
Sbjct: 186 CGVYIFTPDIFTAIQGVSTQRKERADLRRLSSFEALQSATRSLPKDFVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLYTYETM FWEQIKTPGMSLKCS+LYL+ ++ T P LLASG+G SATI G+VYIHP
Sbjct: 246 KKQLYTYETMGFWEQIKTPGMSLKCSALYLSQYQFTFPNLLASGDGTKSATIIGNVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISAN R+GAGVRLISC++LDDVEIKENAVV+++I+GWKSS+G+W+
Sbjct: 306 SAKVHPTAKIGPNVSISANARIGAGVRLISCVILDDVEIKENAVVIHAIVGWKSSVGKWS 365
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ GDYNAKLGITILGEAV VEDEVVV+NSIVLPNK LNVSVQEEIIL
Sbjct: 366 RVQAGGDYNAKLGITILGEAVAVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508632|ref|XP_003523059.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/410 (80%), Positives = 379/410 (92%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
E+VVAVIMVGGPTKGTRFRPLSFN PKPLFPLAGQPM+ HPISACKRIPNLAQI+L+GFY
Sbjct: 6 ERVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACKRIPNLAQIYLLGFY 65
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSSISNELKVPVRYLKED+PHGSAGGLY+FRD+IMEE+PSHI LLNCDVCCS
Sbjct: 66 EEREFALYVSSISNELKVPVRYLKEDRPHGSAGGLYHFRDLIMEEDPSHIFLLNCDVCCS 125
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLPD+L+AH+RYGGMGT+LV+KVSAESA +FGEL+ADP T ELLHYTEKPETFVSD IN
Sbjct: 126 FPLPDMLDAHRRYGGMGTILVVKVSAESASEFGELVADPTTNELLHYTEKPETFVSDRIN 185
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVY+FTP+ FTAI+GV T R+DRAN+R+VSSFEA+Q TR+LPV++VRLDQDILSPLAG
Sbjct: 186 CGVYIFTPNIFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPVNYVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KKQLY YET DFWEQIKTPGMS+KCS LYLA F+ TSP LLA+G+GI A+I GDVYIHP
Sbjct: 246 KKQLYIYETNDFWEQIKTPGMSIKCSGLYLAQFRYTSPHLLANGDGIKKASITGDVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHP+AKIGP+VSISAN R+GAG RL CI+LDDVEIKENA+V ++I+GWKSS+GRWA
Sbjct: 306 SAKVHPSAKIGPSVSISANARIGAGARLKHCIILDDVEIKENALVGHAIVGWKSSIGRWA 365
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
V+ +GDYNAKLG+TILGE+VTVEDEVVV NSI+LP+K LNV VQ+EI+L
Sbjct: 366 CVEASGDYNAKLGVTILGESVTVEDEVVVFNSIILPHKTLNVGVQDEILL 415
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 411 | ||||||
| TAIR|locus:2027201 | 415 | AT1G74910 [Arabidopsis thalian | 0.995 | 0.985 | 0.807 | 1.4e-181 | |
| TAIR|locus:2049188 | 406 | AT2G04650 [Arabidopsis thalian | 0.978 | 0.990 | 0.815 | 1.1e-176 | |
| DICTYBASE|DDB_G0271858 | 412 | gmppA "mannose-1-phosphate gua | 0.968 | 0.966 | 0.457 | 2.3e-94 | |
| ZFIN|ZDB-GENE-040426-1550 | 422 | gmppab "GDP-mannose pyrophosph | 0.965 | 0.940 | 0.446 | 5e-92 | |
| ZFIN|ZDB-GENE-040704-37 | 422 | gmppaa "GDP-mannose pyrophosph | 0.965 | 0.940 | 0.432 | 5.1e-90 | |
| UNIPROTKB|Q96IJ6 | 420 | GMPPA "Mannose-1-phosphate gua | 0.965 | 0.945 | 0.443 | 2.9e-87 | |
| MGI|MGI:1916330 | 420 | Gmppa "GDP-mannose pyrophospho | 0.963 | 0.942 | 0.440 | 4.7e-87 | |
| UNIPROTKB|E1BEN4 | 420 | GMPPA "Uncharacterized protein | 0.965 | 0.945 | 0.434 | 1.3e-86 | |
| RGD|1560644 | 420 | Gmppa "GDP-mannose pyrophospho | 0.963 | 0.942 | 0.435 | 3.3e-86 | |
| UNIPROTKB|E2R1D1 | 420 | GMPPA "Uncharacterized protein | 0.965 | 0.945 | 0.438 | 4.3e-86 |
| TAIR|locus:2027201 AT1G74910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 331/410 (80%), Positives = 373/410 (90%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLS N PKPLFP+AGQPM+ HPISACKRIPNLAQI+L+GFY
Sbjct: 7 EKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQIYLVGFY 66
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVS+ISNELKVPVRYL+EDKPHGSAGGLY+FR++IME++PSHI LLNCDVCCS
Sbjct: 67 EEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLNCDVCCS 126
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPLP +LEAH+ YGG+GT+LVIKVS ESA QFGEL+ADP T ELLHYTEKPETFVSD IN
Sbjct: 127 FPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETFVSDRIN 186
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFTP+ F AI V T R+DRA +++VSSFEALQ ATR +P DFVRLDQDILSPLAG
Sbjct: 187 CGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDILSPLAG 245
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHP 301
KK+LYTYETMDFWEQIK+PGMSL+CS LYL+ F++TSPQLLASG+G SA + GDVYIHP
Sbjct: 246 KKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIGDVYIHP 305
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
SAKVHPTAKIGPNVSISAN RVG GVRL+SCI+LDDVEI ENAVV N+I+GWKSS+GRW+
Sbjct: 306 SAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKSSIGRWS 365
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
RVQ G YN+KLG+TILG++V VEDEVVV +SIVLPNK LNVSVQ+EIIL
Sbjct: 366 RVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 415
|
|
| TAIR|locus:2049188 AT2G04650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1716 (609.1 bits), Expect = 1.1e-176, P = 1.1e-176
Identities = 335/411 (81%), Positives = 362/411 (88%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
EKVVAVIMVGGPTKGTRFRPLSFNTPKPL PLAGQPMI HPISACK+I NLAQIFLIGFY
Sbjct: 4 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLIPLAGQPMIHHPISACKKISNLAQIFLIGFY 63
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
EEREFALYVSSISNELK+PVRYLKEDKPHGSAG LYYFRD IMEE PSH+ LLNCDVCCS
Sbjct: 64 EEREFALYVSSISNELKIPVRYLKEDKPHGSAGALYYFRDRIMEEKPSHVFLLNCDVCCS 123
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
FPL +L+AH+RYGG+GTMLVIKVSAE+A QFGELIADP+TKELLHYTEKPETFVSDLIN
Sbjct: 124 FPLQGILDAHRRYGGIGTMLVIKVSAEAASQFGELIADPDTKELLHYTEKPETFVSDLIN 183
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
CGVYVFT D F AI+ V + IR SS QSATR++P DFVRLDQDILSPLAG
Sbjct: 184 CGVYVFTSDIFNAIEEVYSQ------IRDTSS--NYQSATRSVPADFVRLDQDILSPLAG 235
Query: 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGIT-SATIAGDVYIH 300
KKQLYTYE DFWEQIKTPG SLKCS+LYL+ F+ TSP +LASG+G TI GDVYIH
Sbjct: 236 KKQLYTYENKDFWEQIKTPGKSLKCSALYLSQFRETSPHILASGDGTNRKPTIIGDVYIH 295
Query: 301 PSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360
PS K+HPTAKIGPNVSISANVRVG GVRLISCI+LDDVEIKENAVV+NSIIGWKSS+GRW
Sbjct: 296 PSVKLHPTAKIGPNVSISANVRVGPGVRLISCIILDDVEIKENAVVINSIIGWKSSIGRW 355
Query: 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
+RVQ +GDYN +LGITILGEAVTVEDEV VI SIVL NK LNVSVQ++IIL
Sbjct: 356 SRVQASGDYNDRLGITILGEAVTVEDEVAVIGSIVLQNKTLNVSVQDDIIL 406
|
|
| DICTYBASE|DDB_G0271858 gmppA "mannose-1-phosphate guanylyltransferase alpha" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 189/413 (45%), Positives = 266/413 (64%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+VGGP+KGTRFRPLS + PK LFP+AG+PMI H I AC ++ N+ +I LIGF++E
Sbjct: 8 AIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESV 67
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ ++S S +L V +RY+ E+K G+AGGLY+FRD+I+E PS I +L+ D+CC+FPL
Sbjct: 68 LSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLN 127
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
DLL+ HK++G T++ ++ + A+Q+G L+ D T ELLHY EKPETFVS+LINCGVY
Sbjct: 128 DLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLINCGVY 187
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245
F+P FF I + D Q + + + + V+ +RL+QDI PLAG +
Sbjct: 188 CFSPQFFDVIGKTMI---DLKTSGQNITTDYPEITRKGFDVERLRLEQDIFVPLAGTGFI 244
Query: 246 YTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKV 305
Y + FW QIK G S+ C LYL F T P++L GN I G+V I +A V
Sbjct: 245 SVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGNNII-----GNVIIDSTASV 299
Query: 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG 365
P+A IGP+V I NV++G GVR+I I+LD EIK++A ++ SIIGW+S +G WAR++G
Sbjct: 300 DPSAIIGPDVYIGPNVKIGKGVRVIHSIILDQTEIKDHACIIYSIIGWQSLIGVWARIEG 359
Query: 366 NGDYNAKL-------GITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEIIL 411
+Y L G+TI G E++V N IV+P+K L+ + EIIL
Sbjct: 360 IPNYTPFLYSQDKRRGVTIFGAGAQANGEIIVSNCIVMPHKQLDRNYNNEIIL 412
|
|
| ZFIN|ZDB-GENE-040426-1550 gmppab "GDP-mannose pyrophosphorylase Ab" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 191/428 (44%), Positives = 271/428 (63%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEER- 64
A+I++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++P++ +I LIGFY+
Sbjct: 4 AIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPND 63
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
E ++ S E K+P+RYL+E G+ GG+Y+FRD I+ P+ L+N DVC FPL
Sbjct: 64 ELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPL 123
Query: 125 PDLLEAHKRYGG--MGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINC 182
++L+ H+++G G +L + + +G ++ + T E+LH+ EKP TFVSD+INC
Sbjct: 124 LEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+FTPD F I G + R + I+ E L R +P + VRL+QDI + LAG+
Sbjct: 184 GIYLFTPDIFAHI-GKVFQRNQQEKIQ-----EELTHG-RQMP-EVVRLEQDIFTALAGQ 235
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
K+L+ Y+T FW QIK+ G ++ S LYL + T P+ LA+ G T I GDVYIHP+
Sbjct: 236 KKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQGGTPK-ITGDVYIHPT 294
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A + P+A +GPNVSI V +G GVR+ I+L ++++ VLNSI+GW S++G+WAR
Sbjct: 295 ANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVGKWAR 354
Query: 363 VQGN-GDYN-----AKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G D N AK+ ITILG V + EV++ NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGGLTPSITILGCNVNIPSEVIIRNSIVLPHKDLNR 414
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 415 SFKNQIIL 422
|
|
| ZFIN|ZDB-GENE-040704-37 gmppaa "GDP-mannose pyrophosphorylase Aa" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 185/428 (43%), Positives = 269/428 (62%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-ER 64
AVI++GGP KGTRFRPLSF PKPLFP+AG PM+QH I AC ++PN+ +I LIGFY+
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNE 63
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
E ++S + K+ +RYL+E G+ GG+Y+FRD I+ P ++N DVC FPL
Sbjct: 64 ELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSA--ESAHQFGELIADPNTKELLHYTEKPETFVSDLINC 182
P++L+ K +G + +++ +A + + +G ++ + T E+LHY EKP TFVSD+INC
Sbjct: 124 PEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDIINC 183
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y+FTP+ F I V + + + S+ A + +RL+QDI + LAG+
Sbjct: 184 GIYLFTPEIFQHIGSVFQKNQQEMLLEEQSN--GWHRA------EVIRLEQDIFTALAGQ 235
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPS 302
+LY Y+T FW QIK+ G ++ S LYL + T P+ LA+ N A G+VYIHP+
Sbjct: 236 GKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLAT-NTEGGAKTRGNVYIHPT 294
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
A + PTA +GPNVSI V +GAGVR+ I+L +++++ VLNSI+GW+S++G+WAR
Sbjct: 295 ANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWAR 354
Query: 363 VQG-------NGDY----------NAKL--GITILGEAVTVEDEVVVINSIVLPNKVLNV 403
V+G N Y + KL ITILG V + EV+++NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGKLTPSITILGCNVNIPSEVIILNSIVLPHKDLNR 414
Query: 404 SVQEEIIL 411
S + +IIL
Sbjct: 415 SFKNQIIL 422
|
|
| UNIPROTKB|Q96IJ6 GMPPA "Mannose-1-phosphate guanyltransferase alpha" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 189/426 (44%), Positives = 258/426 (60%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ +P +LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+LEAH+R +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQ 244
Y+F+P+ ++ V + Q+ L T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDG---QLEDSPGLWPGAGT-----IRLEQDVFSALAGQGQ 235
Query: 245 LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAK 304
+Y + T W QIK+ G +L S LYL+ ++ T P+ LA I G+VYIHP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTP-GGPWIRGNVYIHPTAK 294
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
V P+A +GPNVSI V VG GVRL IVL ++E+ VL+SI+GW S++GRWARV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 365 GN-GDYN----------------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVSV 405
G D N KL ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 355 GTPSDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 406 QEEIIL 411
+IIL
Sbjct: 415 TNQIIL 420
|
|
| MGI|MGI:1916330 Gmppa "GDP-mannose pyrophosphorylase A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 188/427 (44%), Positives = 258/427 (60%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ P +LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+LEAH+R +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP-VDFVRLDQDILSPLAGKK 243
Y+F+P+ ++ V + L+ + + P +RL+QD+ S LAG+
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDGQ---------LEESPGSWPGAGTIRLEQDVFSALAGQG 234
Query: 244 QLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSA 303
Q+Y + T W QIK+ G +L S LYL ++IT P+ LA I G+VYIHP+A
Sbjct: 235 QIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTP-GGPRIRGNVYIHPTA 293
Query: 304 KVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARV 363
KV P+A +GPNVSI V +G GVRL IVL ++E+ VL+SI+GW S++GRWARV
Sbjct: 294 KVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARV 353
Query: 364 QGN-GDYN----------------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVS 404
+G D N KL ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 354 EGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413
Query: 405 VQEEIIL 411
+IIL
Sbjct: 414 FTNQIIL 420
|
|
| UNIPROTKB|E1BEN4 GMPPA "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 185/426 (43%), Positives = 257/426 (60%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +P+RYL+E P G+ GGLY+FRD I+ +P +LN DVC FPL
Sbjct: 64 PLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+L+ H+ +L + + +G ++ +P T E+LHY EKP TFVSD+INCG+
Sbjct: 124 SAMLDVHRHQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQ 244
Y+F+P+ ++ V + + S L T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDGQLEDSSG---LWPGAGT-----IRLEQDVFSALAGQGQ 235
Query: 245 LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAK 304
+Y + T W QIK+ G +L S LYL+ +++T P+ LA I G+VYIHP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSQYQLTHPERLAKHTP-GGPRIRGNVYIHPTAK 294
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
V P+A +GPNVSI V +G GVRL IVL ++E+ VL+SI+GW S++GRWARV+
Sbjct: 295 VAPSAVLGPNVSIGEGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 365 GN-GDYN----------------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVSV 405
G D N KL ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRAHMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 406 QEEIIL 411
+IIL
Sbjct: 415 TNQIIL 420
|
|
| RGD|1560644 Gmppa "GDP-mannose pyrophosphorylase A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 186/427 (43%), Positives = 257/427 (60%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ P +LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+L+AH+ +L + + +G ++ +P T E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP-VDFVRLDQDILSPLAGKK 243
Y+F+P+ ++ V + L+ + + P +RL+QD+ S LAG+
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDGQ---------LEESPGSWPGAGTIRLEQDVFSALAGQG 234
Query: 244 QLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSA 303
Q+Y + T W QIK+ G +L S LYL ++IT P+ LA I G+VYIHP+A
Sbjct: 235 QIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTA-GGPRIRGNVYIHPTA 293
Query: 304 KVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARV 363
KV P+A +GPNVSI V +G GVRL IVL ++E+ VL+SI+GW S++GRWARV
Sbjct: 294 KVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARV 353
Query: 364 QGN-GDYN----------------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVS 404
+G D N KL ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 354 EGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413
Query: 405 VQEEIIL 411
+IIL
Sbjct: 414 FTNQIIL 420
|
|
| UNIPROTKB|E2R1D1 GMPPA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 187/426 (43%), Positives = 256/426 (60%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI++GGP KGTRFRPLSF PKPLFP+AG PMIQH I AC ++P + +I LIGFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 66 -FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
++ + E +PVRYL+E P G+ GGLY+FRD I+ P +LN DVC FPL
Sbjct: 64 ALTRFLEAAQQEFNLPVRYLQEFVPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDFPL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+L A++R +L + + +G ++ +P T E+LHY EKP TFVSD+INCG+
Sbjct: 124 SAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDVINCGI 183
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQ 244
Y+F+P+ ++ V + + S L T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVFQRNQQDGQLEDSSG---LWPGAGT-----IRLEQDVFSALAGQGQ 235
Query: 245 LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAK 304
+Y + T W QIK+ G +L S LYL +++T P+ LA I G+VYIHP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGQYQLTHPERLAKHTP-GGPRIRGNVYIHPTAK 294
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
V P+A +GPNVSI V VG GVRL IVL ++E+ VL++I+GW S++GRWARV+
Sbjct: 295 VAPSAVLGPNVSIGEGVTVGEGVRLRESIVLHGATLQEHTCVLHTIVGWGSTVGRWARVE 354
Query: 365 GN-GDYN----------------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVSV 405
G D N KL ITILG V + EV+++NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRAHMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 406 QEEIIL 411
+IIL
Sbjct: 415 TNQIIL 420
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q86HG0 | GMPPA_DICDI | 2, ., 7, ., 7, ., 1, 3 | 0.4552 | 0.9683 | 0.9660 | yes | no |
| Q922H4 | GMPPA_MOUSE | 2, ., 7, ., 7, ., 1, 3 | 0.4355 | 0.9635 | 0.9428 | yes | no |
| Q4I1Y5 | MPG1_GIBZE | 2, ., 7, ., 7, ., 1, 3 | 0.3176 | 0.8613 | 0.9725 | yes | no |
| O60064 | YBB2_SCHPO | 2, ., 7, ., 7, ., 1, 3 | 0.3867 | 0.9537 | 0.9468 | yes | no |
| Q7SXP8 | GMPAB_DANRE | 2, ., 7, ., 7, ., 1, 3 | 0.4439 | 0.9659 | 0.9407 | yes | no |
| Q96IJ6 | GMPPA_HUMAN | 2, ., 7, ., 7, ., 1, 3 | 0.4389 | 0.9659 | 0.9452 | yes | no |
| Q70SJ2 | MPG1_KLULA | 2, ., 7, ., 7, ., 1, 3 | 0.3218 | 0.8686 | 0.9889 | yes | no |
| Q9Y725 | MPG11_CANGA | 2, ., 7, ., 7, ., 1, 3 | 0.3218 | 0.8686 | 0.9889 | yes | no |
| Q0VFM6 | GMPPA_XENTR | 2, ., 7, ., 7, ., 1, 3 | 0.4462 | 0.9635 | 0.9406 | yes | no |
| Q5XIC1 | GMPPA_RAT | 2, ., 7, ., 7, ., 1, 3 | 0.4309 | 0.9635 | 0.9428 | yes | no |
| P41940 | MPG1_YEAST | 2, ., 7, ., 7, ., 1, 3 | 0.3267 | 0.8686 | 0.9889 | yes | no |
| Q752H4 | MPG1_ASHGO | 2, ., 7, ., 7, ., 1, 3 | 0.3095 | 0.8686 | 0.9889 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00020858001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (414 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00018410001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (361 aa) | • | • | • | • | 0.447 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 411 | |||
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 1e-148 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 3e-59 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 5e-46 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 2e-43 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 7e-31 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 4e-26 | |
| cd05824 | 80 | cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate | 5e-24 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 2e-21 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 2e-21 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 3e-21 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 3e-20 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 9e-18 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 2e-17 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 2e-14 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 3e-14 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 1e-13 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 2e-13 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 4e-12 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 5e-12 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 9e-11 | |
| cd04197 | 217 | cd04197, eIF-2B_epsilon_N, The N-terminal domain o | 2e-10 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 2e-09 | |
| PRK00892 | 343 | PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco | 3e-09 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 3e-08 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 4e-08 | |
| cd04652 | 81 | cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, | 5e-08 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 7e-08 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 1e-07 | |
| PRK05289 | 262 | PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr | 1e-07 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 2e-07 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 3e-07 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 5e-07 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 7e-07 | |
| cd03351 | 254 | cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin | 7e-07 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 2e-06 | |
| cd05636 | 163 | cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho | 2e-06 | |
| TIGR01099 | 260 | TIGR01099, galU, UTP-glucose-1-phosphate uridylylt | 2e-06 | |
| TIGR01852 | 254 | TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei | 4e-06 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 8e-06 | |
| COG1043 | 260 | COG1043, LpxA, Acyl-[acyl carrier protein] | 1e-05 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 2e-05 | |
| COG1043 | 260 | COG1043, LpxA, Acyl-[acyl carrier protein] | 3e-05 | |
| COG4750 | 231 | COG4750, LicC, CTP:phosphocholine cytidylyltransfe | 3e-05 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 4e-05 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 4e-05 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 4e-05 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 5e-05 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 5e-05 | |
| cd04183 | 231 | cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv | 7e-05 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 9e-05 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 1e-04 | |
| cd02509 | 274 | cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guan | 1e-04 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 1e-04 | |
| PRK12461 | 255 | PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr | 1e-04 | |
| COG1210 | 291 | COG1210, GalU, UDP-glucose pyrophosphorylase [Cell | 1e-04 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 2e-04 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 2e-04 | |
| cd04645 | 153 | cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra | 2e-04 | |
| cd03354 | 101 | cd03354, LbH_SAT, Serine acetyltransferase (SAT): | 2e-04 | |
| TIGR03570 | 193 | TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia | 2e-04 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 3e-04 | |
| cd00710 | 167 | cd00710, LbH_gamma_CA, Gamma carbonic anhydrases ( | 3e-04 | |
| TIGR03570 | 193 | TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia | 4e-04 | |
| PRK05289 | 262 | PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr | 5e-04 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 5e-04 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 7e-04 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 0.001 | |
| pfam00132 | 36 | pfam00132, Hexapep, Bacterial transferase hexapept | 0.001 | |
| COG0836 | 333 | COG0836, {ManC}, Mannose-1-phosphate guanylyltrans | 0.001 | |
| cd04745 | 155 | cd04745, LbH_paaY_like, paaY-like: This group is c | 0.001 | |
| COG0663 | 176 | COG0663, PaaY, Carbonic anhydrases/acetyltransfera | 0.001 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 0.001 | |
| cd03351 | 254 | cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin | 0.002 | |
| PRK00155 | 227 | PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat | 0.002 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 0.002 | |
| COG0746 | 192 | COG0746, MobA, Molybdopterin-guanine dinucleotide | 0.002 | |
| cd02503 | 181 | cd02503, MobA, MobA catalyzes the formation of mol | 0.003 | |
| pfam00132 | 36 | pfam00132, Hexapep, Bacterial transferase hexapept | 0.004 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 421 bits (1085), Expect = e-148
Identities = 138/265 (52%), Positives = 182/265 (68%), Gaps = 8/265 (3%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+VGGP KGTRFRPLS + PKPLFP+AG+PMI H I AC ++P+L ++ LIGFY E
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
F+ ++S E VP+RYL+E KP G+AGGLY+FRD I+ NPS +LN DVCC FPL
Sbjct: 61 FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+LLE HK++G GT+L + S E A +G ++ DP+T E+LHY EKPETFVSDLINCGVY
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245
+F+P+ F I+ R+ A + R + +RL+QD+L+PLAG +L
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEA--------QLGDDNNREGRAEVIRLEQDVLTPLAGSGKL 232
Query: 246 YTYETMDFWEQIKTPGMSLKCSSLY 270
Y Y+T DFW QIKT G ++ + LY
Sbjct: 233 YVYKTDDFWSQIKTAGSAIYANRLY 257
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-59
Identities = 113/389 (29%), Positives = 181/389 (46%), Gaps = 51/389 (13%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ GG GTR RPL+ + PKPL P+AG+P+I++ + A + ++G+ E+
Sbjct: 4 AVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ L V + Y+ E +P G+AG L D++ ++ ++LN DV L
Sbjct: 62 EEYF--GDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDD---FLVLNGDVLTDLDLS 116
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKP--ETFVSDLINCG 183
+LLE HK+ G + T+ + +V S +FG + D ++ + EKP E S+LIN G
Sbjct: 117 ELLEFHKKKGALATIALTRVLDPS--EFGVVETDDGDGRVVEFREKPGPEEPPSNLINAG 174
Query: 184 VYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243
+Y+F P+ F I + F+ ++++L LA K
Sbjct: 175 IYIFDPEVF-------------DYIEKGERFD---------------FEEELLPALAAKG 206
Query: 244 Q-LYTYETMDFWEQIKTPGMSLKCSSLYLALF-KITSPQLLASGNGITSATIAGDVYIHP 301
+ +Y Y +W I TP L+ + L L K + I SA I G V I P
Sbjct: 207 EDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGP 266
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
AK+ P A IGP I V +G GV + + I++D+V I + + +SIIG +G
Sbjct: 267 GAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA-- 324
Query: 362 RVQGNGDYNAKLGITILGEAVTVEDEVVV 390
+ +G ++G + VVV
Sbjct: 325 --------SLIIGDVVIGINSEILPGVVV 345
|
Length = 358 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 5e-46
Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 35/266 (13%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+VGG GTR RPL+ PKPL +PMI+H I A + + +I L Y +
Sbjct: 3 ALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPED 59
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
++ +L + + + E +P G+AG L RD++ ++ +LN DV C FPL
Sbjct: 60 MVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL-GDDDEPFFVLNSDVICDFPLA 118
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+LL+ HK++G GT+LV KV S +G ++ D NT + + EKP+ FV + IN G+Y
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDPSK--YGVVVHDENTGRIERFVEKPKVFVGNKINAGIY 176
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245
+ P DR +R S ++++I +A + QL
Sbjct: 177 ILNPSVL-----------DRIPLRPTS------------------IEKEIFPKMASEGQL 207
Query: 246 YTYETMDFWEQIKTPGMSLKCSSLYL 271
Y YE FW I P LK SLYL
Sbjct: 208 YAYELPGFWMDIGQPKDFLKGMSLYL 233
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-43
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 36/252 (14%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ G KGTR RPL+ PKPL P+AG+P++++ I R + +I L+ Y +
Sbjct: 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQ 57
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
Y S V + Y+ +++P G+AG + D + ++ +++N DV L
Sbjct: 58 IEEYFGDGSK-FGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLS 113
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+LL H+ G T+ V +V S ++G + D + + + EKP S+L N G+Y
Sbjct: 114 ELLRFHREKGADATIAVKEVEDPS--RYGVVELDDD-GRVTRFVEKPTLPESNLANAGIY 170
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245
+F P+ I +L ED D + L + ++
Sbjct: 171 IFEPEILDYIPEILPRGED--------------------------ELTDAIPLLIEEGKV 204
Query: 246 YTYETMDFWEQI 257
Y Y +W I
Sbjct: 205 YGYPVDGYWLDI 216
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 7e-31
Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 51/365 (13%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ G KGTR RPL+ PKP+ P+AG+P+++H I A + +F++G Y + +
Sbjct: 3 AVILAAG--KGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVG-YGKEK 59
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
Y S VP+ Y+ +++ G+A L ++ + +E ++LN DV
Sbjct: 60 VREYFGDGS-RGGVPIEYVVQEEQLGTADALGSAKEYVDDE----FLVLNGDVLLD---S 111
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT-KELLHYTEKPETFVSDLINCGV 184
DLLE R + V++V S +G + D ++ EKPE S+LIN G+
Sbjct: 112 DLLERLIRAEA-PAIAVVEVDDPS--DYGVVETDGGRVTGIV---EKPENPPSNLINAGI 165
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP---LAG 241
Y+F+P+ F ++ T R + + L + V+ D+ P L
Sbjct: 166 YLFSPEIFELLEK--TKLSPRGEYELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDA 223
Query: 242 KKQLYTYETMDFWEQIKT-------PGMSLKCSSLYLALFKITSPQLLASGNGITSAT-I 293
+ L + ++ +++K P ++ G I S T I
Sbjct: 224 NEAL--------LDNLEPRIEGTVEENVTIK------------GPVVIGEGAVIRSGTYI 263
Query: 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW 353
G VYI + + P A I P I NV +G V + + I+++ +I + V +S+IG
Sbjct: 264 EGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSIIMEGTKIPHLSYVGDSVIGE 323
Query: 354 KSSLG 358
+ G
Sbjct: 324 NCNFG 328
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 4e-26
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 10/191 (5%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFP-LAGQPMIQHPISACKRIPNLAQIFLIGFYEER 64
A+I+ GG GTR PL+ KPL P L PMIQ+ +S I +
Sbjct: 2 AIILAGG--SGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRF 59
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
A + S + + V Y + +P G+A + D + +++P +++L D
Sbjct: 60 LVAEQLGDGS-KFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDF 118
Query: 125 PDLLEAHKRYGGMGTMLVI--KVSAESAHQFGELIADPNTKELLHYTEKPETFV-SDLIN 181
+ ++ + GT+ V + +G + D N + ++ + EKP+ S+ +
Sbjct: 119 EEAVQKARAKAADGTVTFGIVPVEDPTG--YGVIEFDENGR-VIRFVEKPDLPKASNYAS 175
Query: 182 CGVYVFTPDFF 192
G+Y F F
Sbjct: 176 MGIYFFNSGVF 186
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-24
Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 9/88 (10%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLG 358
I PSAK+ TAKIGPNV I NV +G GVRL C++L + +++++ V +SI+GW S++G
Sbjct: 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVG 61
Query: 359 RWARVQGNGDYNAKLGITILGEAVTVED 386
RW R++ +T+LG+ VT++D
Sbjct: 62 RWTRLE---------NVTVLGDDVTIKD 80
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 2e-21
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
VIM GG KGTR RPL+ NTPKP+ + G+P+++ I GF R
Sbjct: 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIA---------QGF---RN 46
Query: 66 FALYVSSISNELK----------VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLN 115
F + V+ ++ ++ V + Y++EDKP G+AG L + +P +++N
Sbjct: 47 FYISVNYLAEMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKP--TDP--FLVMN 102
Query: 116 CDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPE-T 174
D+ + LL+ HK T+ V + + +G + + + EKP +
Sbjct: 103 GDILTNLNYEHLLDFHKENNADATVCVREYEVQVP--YGVV--ETEGGRITSIEEKPTHS 158
Query: 175 FVSDLINCGVYVFTPDFF 192
F L+N G+YV P+
Sbjct: 159 F---LVNAGIYVLEPEVL 173
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-21
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 11/190 (5%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+I+ GG KGTR RPL++ PK L P+AG+P+IQ+ I + + I ++ E
Sbjct: 3 GLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEE 59
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ S V + Y+ +++P G A + RD + + ++ L D +
Sbjct: 60 IKEALGDGSR-FGVRITYILQEEPLGLAHAVLAARDFL--GDEPFVVYLG-DNLIQEGIS 115
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
L+ ++L+ +V E +FG +A + ++ EKP+ S+L GVY
Sbjct: 116 PLVRDFLEEDADASILLAEV--EDPRRFG--VAVVDDGRIVRLVEKPKEPPSNLALVGVY 171
Query: 186 VFTPDFFTAI 195
FTP F AI
Sbjct: 172 AFTPAIFDAI 181
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-21
Identities = 95/424 (22%), Positives = 168/424 (39%), Gaps = 78/424 (18%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISAC--KRIPNLAQIFL 57
+ V+A+I+ GG +G+R PL+ + KP P G+ +I +S C I I +
Sbjct: 3 KKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRR---IGV 57
Query: 58 IGFYEEREFALYVSS-------ISNE----LKVPVRYLKEDKPHGSAGGLYYFRDMIMEE 106
+ Y+ ++ N L R E G+A +Y +I
Sbjct: 58 LTQYKSHSLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRS 117
Query: 107 NPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELL 166
+P ++++L+ D D+L+ H G T+ V +V E A +FG + D N + ++
Sbjct: 118 DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGR-II 176
Query: 167 HYTEKP--ETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTL 224
+ EKP + L + G+Y+F D + E+ A S
Sbjct: 177 EFVEKPADGPPSNSLASMGIYIFNTDL------LKELLEEDAKDPNSSH----------- 219
Query: 225 PVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT------PGMSLKCSSLYLALF---- 274
DF +DI+ L + ++Y YE +W + T M L L L+
Sbjct: 220 --DF---GKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNW 274
Query: 275 ------KITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVR 328
K P + + ++++ +AG I S V N + VR+G G
Sbjct: 275 PIYTKNKNLPPAKFVNDSEVSNSLVAGGCII--SGTVE-------NSVLFRGVRIGKGSV 325
Query: 329 LISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN-GDYNAKLGITILGEAVTVEDE 387
+ + +++ DVEI E AV+ +II +G + G+ + + K E+
Sbjct: 326 IENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKRFR--------SEEG 377
Query: 388 VVVI 391
+VV+
Sbjct: 378 IVVV 381
|
Length = 393 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-20
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 67/259 (25%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQ------IFLIG 59
AVI+ GG GTR R + + PKPL P+AG+P +++ + LA+ + +G
Sbjct: 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEY------LLEYLARQGISRIVLSVG 52
Query: 60 F--------YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHI 111
+ + + + + Y+ E +P G+ G + + E+
Sbjct: 53 YLAEQIEEYFGDGYRGG----------IRIYYVIEPEPLGTGGAIKNALPKLPED---QF 99
Query: 112 ILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEK 171
++LN D L LL A + G TM + +V A ++G + D ++ + EK
Sbjct: 100 LVLNGDTYFDVDLLALLAALRASGADATMALRRV--PDASRYGNVTVD-GDGRVIAFVEK 156
Query: 172 PETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRL 231
LIN GVY+ + I S EA
Sbjct: 157 GPGAAPGLINGGVYLLRKEILAEIP------------ADAFSLEA--------------- 189
Query: 232 DQDILSPLAGKKQLYTYET 250
D+L L + +LY +E
Sbjct: 190 --DVLPALVKRGRLYGFEV 206
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 9e-18
Identities = 73/390 (18%), Positives = 141/390 (36%), Gaps = 87/390 (22%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEER 64
A+++ GG G+R PL+ KP P G+ +I P+S C + +I ++ Y+
Sbjct: 1 AMVLAGGR--GSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCIN-SGIRRIGVLTQYKSH 57
Query: 65 EFALYVSS------ISNELKVPVR-YLKEDKPH---GSAGGLYYFRDMIMEENPSHIILL 114
++ + + +E G+A +Y D+I + +P ++++L
Sbjct: 58 SLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLIL 117
Query: 115 NCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKP-- 172
+ D +L+ H G T+ I V + A +FG + D + + ++ + EKP
Sbjct: 118 SGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGR-IVDFEEKPAN 176
Query: 173 -ETFVSD----LINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSSFEALQSATRTLPV 226
+ L + G+Y+F D + ED + F
Sbjct: 177 PPSIPGMPDFALASMGIYIFDKDVLKELL------EEDADDPESSHDF------------ 218
Query: 227 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT---------------PGMSLKCSSLYL 271
+DI+ + + Y +W + T P L Y
Sbjct: 219 -----GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDL-----YD 268
Query: 272 ALFKITS-------PQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVS---ISANV 321
+ I + + + S + + ++ I G VS + V
Sbjct: 269 RKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIIS-----------GATVSHSVLGIRV 317
Query: 322 RVGAGVRLISCIVLDDVEIKENAVVLNSII 351
R+G+G + +++ DV I AV+ N+II
Sbjct: 318 RIGSGSTVEDSVIMGDVGIGRGAVIRNAII 347
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 49/225 (21%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFL-------- 57
AV++ G G+RF PL+ + PK L P+A P+I + + ++ + ++F+
Sbjct: 3 AVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQA 59
Query: 58 IGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD 117
I + + SS+S+++ V V + G A L R +I S +LL+CD
Sbjct: 60 IIEHLLKSKW---SSLSSKMIVDVITSDLCESAGDALRLRDIRGLI----RSDFLLLSCD 112
Query: 118 VCCSFPLPDLLEA----HKRYGGMGTMLVIKVSAESAHQFGE-----LIA-DPNTKELL- 166
+ + PL +LLE K +++ S Q + +IA D T+ LL
Sbjct: 113 LVSNIPLSELLEERRKKDKNA-IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLL 171
Query: 167 -HYTEKPE------------------TFVSDLINCGVYVFTPDFF 192
HY E + T +DL++C +Y+ +PD
Sbjct: 172 LHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-14
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSL 357
I S + A I +V I NVR+G GV + + I++D+V I N+V+++SIIG + +
Sbjct: 1 LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59
Query: 358 GRWARVQGNGDYNAKLGITILGEAVTVED 386
G RV I+G+ V VED
Sbjct: 60 GENVRVVNL---------CIIGDDVVVED 79
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 85/366 (23%), Positives = 145/366 (39%), Gaps = 50/366 (13%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+ G KGTR RPL+F PK L P+A +P++Q+ I + I ++ E
Sbjct: 2 ALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGE 58
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ + Y+ + +P G A +Y RD + +++ ++ L D +
Sbjct: 59 EIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGDDD--FVVYLG-DNLIQDGIS 115
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT-KELLHYTEKPETFVSDLINCGV 184
+++ + +L+ KV +A FG +A K +L EKP+ S+L G+
Sbjct: 116 RFVKSFEEKDYDALILLTKVRDPTA--FG--VAVLEDGKRILKLVEKPKEPPSNLAVVGL 171
Query: 185 YVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQ 244
Y+F P F AI NI+ S L + D + L K
Sbjct: 172 YMFRPLIFEAI----------KNIK--------PSWRGELEI------TDAIQWLIEKGY 207
Query: 245 LYTYETMD-FWEQIKTPGMSLKCSSLYLALFK-----------ITSPQLLASGNGITSAT 292
+ +W+ P L + L L + I ++ G I ++
Sbjct: 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVGEGAKIVNSV 267
Query: 293 IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKEN-AVVLNSII 351
I G I + + IGP SI V + + IVLD+ I+ A +++S+I
Sbjct: 268 IRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIRDA-EVEHSIVLDESVIEGVQARIVDSVI 325
Query: 352 GWKSSL 357
G K +
Sbjct: 326 GKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 11/191 (5%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEER- 64
VI+ GG GTR RPL+ PK L P+ +PMI +P+ + I ++ E++
Sbjct: 3 GVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKP 59
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL 124
F + S + V + Y + +P G A + D + +++ +L D L
Sbjct: 60 TFKELLGDGS-DFGVDITYAVQPEPDGLAHAVLIAEDFVGDDD---FVLYLGDNIFQDGL 115
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGV 184
+LLE G T+L+ +V + ++G + D + K ++ EKP+ S+L G+
Sbjct: 116 SELLEHFAEEGSGATILLYEV--DDPSRYGVVEFDEDGK-VIGLEEKPKEPKSNLAVTGL 172
Query: 185 YVFTPDFFTAI 195
Y + P F AI
Sbjct: 173 YFYDPSVFEAI 183
|
Length = 286 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 43/217 (19%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ GG G+R PL+ N PK L P+A +PMI +P+ ++ I ++ E+ E
Sbjct: 3 AVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60
Query: 66 FALYVSSISNELKVPVRYLKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP 123
+ Y+ S LK + + D+ G+A L + R I ++L+CD+ P
Sbjct: 61 ISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKI----KKDFLVLSCDLITDLP 116
Query: 124 LPDLLEAHKRYGGMGTML--------------VIKVSAESAHQFGELIADPNTKELLHYT 169
L +L++ H+ + T+L A+ G D T+ LL T
Sbjct: 117 LIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIG---LDEKTQRLLFIT 173
Query: 170 EKPE------------------TFVSDLINCGVYVFT 188
+ + T + L++ VY+F
Sbjct: 174 SEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFK 210
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-12
Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 29/191 (15%)
Query: 16 GTRFRPLSFNTPKPLFPLAGQPMIQHPISACKR------IPNLA----QIFLIGFYEERE 65
GTR RPL+ PKPL P+AG+P+I H + + N QI +
Sbjct: 10 GTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQI--EAHLGDSR 67
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
F L + +IS+E + + GG+ ++ +E +++N D+ L
Sbjct: 68 FGLRI-TISDEPDELL---------ETGGGIKKALPLLGDEP---FLVVNGDILWDGDLA 114
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
LL H +L+ V + G+ D + V+ G+
Sbjct: 115 PLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD----GRLRRGGGGAVAPFTFTGIQ 170
Query: 186 VFTPDFFTAIQ 196
+ +P+ F I
Sbjct: 171 ILSPELFAGIP 181
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 96/426 (22%), Positives = 171/426 (40%), Gaps = 83/426 (19%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISAC-----KRIPNLAQ 54
++++A+I+ GG +GTR L+ N KP P G+ +I +S C + L Q
Sbjct: 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQ 58
Query: 55 IFLIGFYEEREFALYVSS--------ISNELKVPVRYLKEDKPH---GSAGGLYYFRDMI 103
Y+ E ++ I+ + + Y + + G+A +Y D I
Sbjct: 59 ------YQPLELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYI 112
Query: 104 MEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163
+ +P ++++L+ D +L+ HK T+ VI+V E A +FG + D N
Sbjct: 113 DQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENM- 171
Query: 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRT 223
++ + EKP+ S+L + G+Y+F ++ L ED N SS
Sbjct: 172 RIVEFEEKPKNPKSNLASMGIYIFNWKR---LKEYLI--EDEKN--PNSSH--------- 215
Query: 224 LPVDFVRLDQDIL-SPLAGKKQLYTYETMDFWEQIKT------PGMSLKCSSLYLALF-- 274
DF ++++ L ++LY Y +W+ + T M L L LF
Sbjct: 216 ---DF---GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDR 269
Query: 275 --KITSPQLLASGNGITSATIAGDVYIHPSAKVHPT-----AKIGPNVS---ISANVRVG 324
+I S YI +AKV + + V + V+VG
Sbjct: 270 NWRIYSVNPNLPPQ-----------YIAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVG 318
Query: 325 AGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTV 384
G + +++ +I EN V+ +IIG + +G + G + IT++GE +
Sbjct: 319 EGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKE-----VITVIGENEVI 373
Query: 385 EDEVVV 390
V+
Sbjct: 374 GVGTVI 379
|
Length = 380 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 9e-11
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ G KGTR + + PK L PLAG+PM++H + A + + +I ++ + +
Sbjct: 1 AVILAAG--KGTRMK---SDLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQ 54
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPL- 124
+++ V ++ +++ G+ + + ++ +++L DV PL
Sbjct: 55 VKKALANP------NVEFVLQEEQLGTGHAVKQALPAL-KDFEGDVLVLYGDV----PLI 103
Query: 125 -----PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTE----KPETF 175
LLEAH+ G T+L + E +G +I D ++L E E
Sbjct: 104 TPETLQRLLEAHREAGADVTVLTAE--LEDPTGYGRIIRD-GNGKVLRIVEEKDATEEEK 160
Query: 176 VSDLINCGVYVF-TPDFFTAIQGV 198
+N G+Y F F A+ +
Sbjct: 161 AIREVNAGIYAFDAEFLFEALPKL 184
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 54/240 (22%), Positives = 88/240 (36%), Gaps = 76/240 (31%)
Query: 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLA-----QIFLI 58
+ AV++ + RFRPL+ P+ L PLA P+I + + LA ++F+
Sbjct: 1 LQAVVL--ADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLE------FLALNGVEEVFV- 51
Query: 59 GFYEEREFALYVSSISNELKVPVRYLKEDKPHG--------------SAG----GLYYFR 100
+ S S+++K + K KP S G L
Sbjct: 52 ----------FCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKG 101
Query: 101 DMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRY-----GGMGTMLVIKVSAES---AHQ 152
+ IL++ DV + L ++LE HK + TM++ + S
Sbjct: 102 LI-----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTG 156
Query: 153 FGELIA-DPNTKELLHYTEKP----ETFVS----------------DLINCGVYVFTPDF 191
+IA DP T LLHY E P + DL++C + + +PD
Sbjct: 157 EEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV 216
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-N 348
IHP+A + PTA IG NVSI NV +GAG V I EN V+
Sbjct: 93 YRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAG-----------VVIGENVVIGAG 141
Query: 349 SIIGWKSSLGRWARVQGNG--DYNAKLG 374
++IG +G + N +N +G
Sbjct: 142 AVIGENVKIGDGTVIHPNVTIYHNVVIG 169
|
Length = 338 |
| >gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 3e-09
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSL 357
IHPSA + P+AKIG VSI N +GAGV + D V I AV+ IG L
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVI-----GDGVVIGAGAVIGDGVKIGADCRL 157
Query: 358 GRWARV 363
A V
Sbjct: 158 --HANV 161
|
Length = 343 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 35/143 (24%)
Query: 117 DVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFV 176
D + L+E H+ +G + T+ + +FGEL D + + + +TEKP+
Sbjct: 127 DGVSDVNINALIEFHRSHGKLATVTAVHPPG----RFGELDLDDDGQ-VTSFTEKPQG-D 180
Query: 177 SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236
IN G +V P+ F I G T FE ++ L
Sbjct: 181 GGWINGGFFVLEPEVFDYIDGDDT------------VFE-----------------REPL 211
Query: 237 SPLAGKKQLYTYETMDFWEQIKT 259
LA +L Y+ FW+ + T
Sbjct: 212 ERLAKDGELMAYKHTGFWQCMDT 234
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 4e-08
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-N 348
SA I +V I P+A + IG V I V +G GV + DD I N +
Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVV-----IGDDCVIHPNVTIYEG 55
Query: 349 SIIG 352
IIG
Sbjct: 56 CIIG 59
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-08
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 305 VHPTAKIGPNVSI-----SANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGR 359
V ++G SI AN ++G V++ +C+++D+V I++ + N IIG + +G
Sbjct: 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGE 61
Query: 360 WARVQG 365
+++
Sbjct: 62 KCKLKD 67
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 299 IHPSAKVHPTAK------IGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL-NSI 350
IHP+A V P+AK IGPNV I A V +G V + ++ DDV I + + + N +
Sbjct: 94 IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVV 153
Query: 351 IGWKSSLGRWARVQ 364
I + LG+ +
Sbjct: 154 IYERVQLGKNVIIH 167
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 30/198 (15%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLI-GFYEE- 63
A+I+ G +G+R RPL+ + PK L + G+P+++ I K + I ++ G+ +E
Sbjct: 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQ 57
Query: 64 -REFA---LYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC 119
E + + N Y + + LY RD + E +LL DV
Sbjct: 58 IEELLKKYPNIKFVYNP-----DYAET----NNIYSLYLARDFLDE----DFLLLEGDV- 103
Query: 120 CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDL 179
P +LE +LV K + E ++ + + D L + ++
Sbjct: 104 --VFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGV---LLGIISKAKNLEEI 158
Query: 180 --INCGVYVFTPDFFTAI 195
G+ F+P+ +
Sbjct: 159 QGEYVGISKFSPEDADRL 176
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 299 IHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLIS-CIVLDDVEIKEN 343
IHP+A V P AKIG NV I NV +G G + S ++ I +N
Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKN 56
|
Length = 262 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
G+T I G V I ++ P + V I +V +G G + + ++ +V I
Sbjct: 246 AGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVI 305
Query: 341 KENAVVLNSIIGWKSSLGRWARVQGNGDY--NAKLG 374
K +V+ S IG +G +AR++ +G
Sbjct: 306 KAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIG 341
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
+ AVI+ G KGTR + + PK L P+AG+PM++H I A + + + ++G
Sbjct: 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA 56
Query: 63 EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF 122
E+ +++ + V ++ +++ G+ + + ++ +++L DV
Sbjct: 57 EQ----VREALAE--RDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDV---- 106
Query: 123 PL------PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEK---PE 173
PL +LL AH +G T+L + +G ++ D N + EK E
Sbjct: 107 PLITAETLEELLAAHPAHGAAATVLT--AELDDPTGYGRIVRDGNGEVTAIVEEKDASEE 164
Query: 174 TFVSDLINCGVYVF 187
IN G+Y F
Sbjct: 165 EKQIKEINTGIYAF 178
|
Length = 460 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-07
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349
+ I GDV I + P + I + +G + + D V IK ++V+ +
Sbjct: 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGA 68
Query: 350 IIGWKSSLGRWARVQGNGD--YNAKLG 374
+IG +++G +A ++ +G
Sbjct: 69 VIGNGATVGPFAHLRPGTVLGEGVHIG 95
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
G+T + I GDV I + P + N I NV +G G + ++ D+ I
Sbjct: 253 AGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVI 312
Query: 341 KENAVVLNSIIGWKSSLGRWARVQGNGDY--NAKLG 374
K +V+ S +G +++G +AR++ + +G
Sbjct: 313 KAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIG 348
|
Length = 460 |
| >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 7e-07
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 299 IHPSAKVHPTAKIGPNVSI------SANVRVGAGVRLISCIVLD 336
IHP+A V P AKIG NV I NV +G G + S +V+D
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVID 45
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 49/226 (21%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPI-----SACKRIPNLAQIFLIG- 59
AVI G GTRF P + PK + P+ +P+IQ+ + + + I I + G
Sbjct: 3 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDI-----IIVTGR 55
Query: 60 -------------FYEER-------EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYF 99
EE + V IS+ + Y+++ +P G +
Sbjct: 56 GKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISD--LANIHYVRQKEPLGLGHAVLCA 113
Query: 100 RDMIMEENPSHIILLNCDVCCSFP--LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157
+ I +E +LL D+ S L L+EA+++ G + V +V E ++G I
Sbjct: 114 KPFIGDE--PFAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIAVEEVPPEDVSKYG--I 168
Query: 158 ADPNTKE-----LLHYTEKP--ETFVSDLINCGVYVFTPDFFTAIQ 196
+ + EKP E S+L G YV TPD F ++
Sbjct: 169 VKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILE 214
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSI 350
A I G V I ++ P A I + VG V + + I++D ++ V +S+
Sbjct: 30 AYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSV 89
Query: 351 IGWKSSLG 358
+G +LG
Sbjct: 90 LGENVNLG 97
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163 |
| >gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 49/225 (21%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPI-----SACKRIPNLAQIFLIGF 60
AVI G GTRF P + PK + P+ +P+IQ+ + + + I + + G
Sbjct: 3 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDI-----LIVTGR 55
Query: 61 YE-----------EREFAL----------YVSSISNELKVPVRYLKEDKPHGSAGGLYYF 99
+ E E L V SI + Y+++ + G +
Sbjct: 56 GKRSIEDHFDTSYELEHQLEKTNKEELLKEVRSIIP--LATIFYVRQKEQKGLGHAVLCA 113
Query: 100 RDMIMEENPSHIILLNCDVCCSFP--LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157
+ +E ++L D+C S L +++ +++YG + V +V E ++G +
Sbjct: 114 EPFVGDE--PFAVILGDDICVSEEPVLKQMIDLYEKYGC-SIIAVEEVPKEEVSKYG--V 168
Query: 158 ADPNTKELLHY-----TEKP--ETFVSDLINCGVYVFTPDFFTAI 195
D E Y EKP E S+L G YV TPD F +
Sbjct: 169 IDGEGVEEGVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELL 213
|
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260 |
| >gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 299 IHPSAKVHPTAKIGPNVSI------SANVRVGAGVRLIS-CIVLDDVEIKENAVVL-NSI 350
IHP+A + P A+IG NV I V++G GV L S ++L I E + ++
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAV 60
Query: 351 IG 352
IG
Sbjct: 61 IG 62
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 95/417 (22%), Positives = 158/417 (37%), Gaps = 117/417 (28%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLA-----Q 54
M KV+A+++ GG +G R PL+ + KP P G +I +S NL +
Sbjct: 3 MPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLS------NLVNSGYLR 54
Query: 55 IFLIGFYEEREFALY--------VSSISNELKVPVRYLKEDKPH---GSAGGLYYFRDMI 103
I+++ Y + +L +S + PV + GSA +Y ++I
Sbjct: 55 IYVLTQY--KSHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLI 112
Query: 104 MEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163
+E+P ++++ D +++ H G T+ I+V E A FG + DP+ +
Sbjct: 113 EDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGR 172
Query: 164 ELLHYTEKP-----------ETFVSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQV 211
+ + EKP E S G YVFT D A+ R D A+
Sbjct: 173 -IRGFLEKPADPPGLPDDPDEALAS----MGNYVFTTDALVDAL------RRDAADED-- 219
Query: 212 SSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYE---------------------T 250
S+ D DI+ L + + Y Y+ T
Sbjct: 220 -------SSH-----DM---GGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGT 264
Query: 251 MD-FWEQIKTPGMSLKCS-----SLYLALFKI--TSPQL-----LASGNGITSAT---IA 294
+D +++ M L S +LY + I +SP L + G + SA ++
Sbjct: 265 IDAYYDA----HMDL-LSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVS 319
Query: 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSII 351
I A V N +S NV V +G + +++D V I AVV +I+
Sbjct: 320 AGSIIS-GATVR-------NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAIL 368
|
Length = 407 |
| >gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 299 IHPSAKVHPTAKIGPNVSI------SANVRVGAGVRLISCIVLD-DVEIKENAVV 346
IHP+A + P A+IG +V I NV +G G L S +V++ I N +
Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRI 60
|
Length = 260 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-05
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 288 ITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL 347
+ ++ ++ I V N + VRVG+G + +++ +V I NAV+
Sbjct: 10 VKNSLVSEGCIIS-GGTVE-------NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR 61
Query: 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390
+II + + G+ + + V V +V+
Sbjct: 62 RAIIDKNVVIPDGVVIGGDPEEDRARFYVTEDGIVVVGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 300 HPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN 348
AK+HPTA I P I +V++G CI+ +VEI + V+ +
Sbjct: 1 MKMAKIHPTAIIEPGAEIGEDVKIGP-----FCIIGPNVEIGDGTVLKS 44
|
Length = 260 |
| >gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPI 43
A+I+ G G+RF PL+ +TPK L + G+P+I+ I
Sbjct: 3 AIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQI 38
|
Length = 231 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-05
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 34/132 (25%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
VI+ GG + +R K L PL G+P+++ + + P ++ ++ E
Sbjct: 1 GVILAGG--RSSRM-----GGDKALLPLGGKPLLERVLDRLR--PAGDEVVVVTNRPEIA 51
Query: 66 FALYVSSISNELKVPVRYLKEDKPH-GSAGGLY----YFRDMIMEENPSHIILLNCDVCC 120
AL + V + + P G GL D +++L CD+
Sbjct: 52 AAL--------AGLGVPVVPDPDPGQGPLAGLAAGLRAAPD------ADAVLVLACDM-- 95
Query: 121 SFPL--PDLLEA 130
P PDLL
Sbjct: 96 --PFLTPDLLRR 105
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 44/216 (20%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLI-G 59
M + A+I+ G KGTR + + K + PLAG+PM+ P++A R +I L+ G
Sbjct: 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAA-REAGAGRIVLVVG 54
Query: 60 FYEEREFALYVSSISNELKVPVRYLKEDKPHG-------SAGGLYYFRDMIMEENPSHII 112
E+ + V + +++ G +A L F ++ I
Sbjct: 55 HQAEKVREHFAG------DGDVSFALQEEQLGTGHAVACAAPALDGFSGTVL-------I 101
Query: 113 LLNCDVCCSFP------LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELL 166
L C P L +L AH+ G T+L ++ E+ +G ++ D + + L
Sbjct: 102 L-----CGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRDADGRVLR 154
Query: 167 HYTEK---PETFVSDLINCGVYVFTPDF-FTAIQGV 198
EK PE +N G+Y F F AI +
Sbjct: 155 IVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRL 190
|
Length = 459 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGA---GVRLISCIVLDDVEIKENAVVL 347
I V IHP A + IG NV+I +GA I+ D+VEI NAV+
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 348 -------NSIIGWKSSLG 358
N++IG + +
Sbjct: 61 GGVKIGDNAVIGAGAVVT 78
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 36/151 (23%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
VI+ G KGTR + + PK L PLAG+PM++H I A + + + G E+
Sbjct: 3 VVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQ- 56
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP-----SHIILLNCDVCC 120
+++N V ++ + + G+ +++ P +++L DV
Sbjct: 57 ---VRKALANR---DVNWVLQAEQLGTGHA-------VLQALPFLPDDGDVLVLYGDV-- 101
Query: 121 SFPL------PDLLEAHKRYGGMGTMLVIKV 145
PL LLEAH++ G T+L K+
Sbjct: 102 --PLISAETLERLLEAHRQNG--ITLLTAKL 128
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLI 58
+ VI+ G KGTR + + PK L LAG+PM+QH I A + + L+
Sbjct: 3 NSAMSVVILAAG--KGTR---MYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLV 54
|
Length = 456 |
| >gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEER 64
+ + M G G+RF+ + PKPL + G+PMI+ I + +I + IF+
Sbjct: 1 IIIPMAG---LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNT 57
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD 117
+F L S V L + G+A + D+I ++P +++ NCD
Sbjct: 58 KFHLDESLKLLAPNATVVELDGET-LGAACTVLLAADLIDNDDP--LLIFNCD 107
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL- 347
+ATI +V I P+ + IG NV I A +G V+ + D I N +
Sbjct: 110 PTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVK-----IGDGTVIHPNVTIYH 164
Query: 348 NSIIGWKSSLGRWARVQGNG-----DYNAKLGITILGEAVTVEDEV 388
N +IG + A + +G + I +G V + D+V
Sbjct: 165 NVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG-RVIIGDDV 209
|
Length = 338 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 297 VYIHPSAKVHPTAKIGPNVSISANVRVG------AGVRLISCIVLDDVEIKENAVVLNSI 350
YI + I P V IS + R+G GV + C + DDV +K +V+ +S+
Sbjct: 263 TYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV 322
Query: 351 IGWKSSLGRWA 361
+G ++G A
Sbjct: 323 VGDDVAIGPMA 333
|
Length = 459 |
| >gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 4 VVAVIMVGGPTKGTRFRPLSFNT-PKPLFPLAG-QPMIQHPISACKRIPNLAQIFLI 58
+ VI+ GG GTR PLS + PK L G + ++Q + K + +I ++
Sbjct: 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVV 55
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE 63
V A+I+ G G+R + PK L G+P+++H + A P + +I ++ ++
Sbjct: 1 VAAIILAAG--SGSRM---GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDD 55
Query: 64 REFALYVSSISNELKVPV 81
+ A ++ V +
Sbjct: 56 IDLAKELAKYGLSKVVKI 73
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLG 358
IHP+A + P+AK+G V I +GA +VEI + + IG + +
Sbjct: 2 IHPTAVIDPSAKLGSGVEIGPFAVIGA-----------NVEIGD-----GTWIGPHAVIL 45
Query: 359 RWARVQGNGD---YNAKLG 374
R+ G + A +G
Sbjct: 46 GPTRI-GKNNKIHQGAVVG 63
|
Length = 255 |
| >gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 40/221 (18%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPI-----SACKRI-----PNLAQI 55
AVI G GTRF P + PK + P+ +P+IQ+ + + + I I
Sbjct: 7 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64
Query: 56 ---F-----LIGFYEER---EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104
F L E+R E V SI V + ++++ +P G + + +
Sbjct: 65 EDHFDTSYELENTLEKRGKRELLEEVRSIPP--LVTISFVRQKEPLGLGHAVLCAKPFVG 122
Query: 105 EENPSHIILLNCDVCCSFP--LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162
+E +LL D+ S L ++E ++ GG + V +V E ++G + DP
Sbjct: 123 DE--PFAVLLPDDLVDSEKPCLKQMIELYEETGG-SVIGVEEVPPEDVSKYG--VIDPGE 177
Query: 163 ---KELLHYT---EKP--ETFVSDLINCGVYVFTPDFFTAI 195
K + EKP E S+L G YV TP+ F +
Sbjct: 178 PVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDIL 218
|
Length = 291 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
NV++ V++GAG L +C++ DD EI +VV ++ +G ++G +AR
Sbjct: 283 NVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFAR 331
|
Length = 456 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISAC 46
M++V+A+I+ GG GTR PL+ KP PLAG+ +I PIS C
Sbjct: 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNC 45
|
Length = 429 |
| >gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-04
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Query: 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS-- 349
I +I P+A V +G S+ + V I + + I++ +V+
Sbjct: 1 EIDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPI--RIGERTNIQDGSVLHVDPG 58
Query: 350 ---IIGWKSSLGRWARVQGN--GDYNAKLGI--TILGEAVTVEDEVVV-INSIVLPNKVL 401
IIG ++G A + G GD N +G+ IL AV + +V S+V P KV+
Sbjct: 59 YPTIIGDNVTVGHGAVLHGCTIGD-NCLIGMGAIILDGAV-IGKGSIVAAGSLVPPGKVI 116
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153 |
| >gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 290 SATIAGDVYI-HPSAKV-HPTAKIGPNVSISANVRVGAGVRLIS--CIVL-DDVEIKENA 344
A I ++I H + V TA IG N +I V +G + + D+V I A
Sbjct: 8 GAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGA 67
Query: 345 VVL-------NSIIG 352
+L N IG
Sbjct: 68 KILGNITIGDNVKIG 82
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101 |
| >gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV 346
T++G V I + A I V+I A VGAG + + D I + VV
Sbjct: 139 VTLSGGVVIGEGVFIGAGATIIQGVTIGAGAVVGAG----AVVTKD---IPDGGVV 187
|
This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
NG+T S I DV I + P I N I + +G G R++ + D V I
Sbjct: 250 NGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTI 309
Query: 341 KENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIV 395
N+V+ S +G ++G +A ++ +++GE V + + V + S +
Sbjct: 310 T-NSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEVKIGNFVEIKKSTI 354
|
Length = 458 |
| >gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISC------IVLDDVEIKENAVV----- 346
I PSA VHPTA + +V I NV VG G I I+ +V I++ V+
Sbjct: 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGA-SIRADEGTPIIIGANVNIQDGVVIHALEG 62
Query: 347 LNSIIGWKSSLGRWARVQG 365
+ IG S+ A V G
Sbjct: 63 YSVWIGKNVSIAHGAIVHG 81
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167 |
| >gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 297 VYIHPSAKVHPTAKIG------PNVSISANVRVGAGVRL-ISCIVLDDVEIKENAVVLNS 349
IHPSA V P+A IG I+ +VR+G V + IV D I +
Sbjct: 79 TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVH---- 134
Query: 350 IIGWKSSLGRWARVQGNGDY---NAKL--GITILGEAVTVEDEVVVINSI 394
I +L + G G + A + G+TI G V VV I
Sbjct: 135 -IAPGVTLSGGVVI-GEGVFIGAGATIIQGVTI-GAGAVVGAGAVVTKDI 181
|
This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193 |
| >gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 5e-04
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGW 353
AK+HPTA + P I NV +G C++ +V I + V+ + I G
Sbjct: 2 MAKIHPTAIVEPGAKIGENVEIGPF-----CVIGPNVVIGDGTVIGSHVVIDGH 50
|
Length = 262 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-04
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV-LNSIIGWKS 355
IHPSA V P+A IG I A + R I +N ++ ++IG
Sbjct: 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDAR-----------IGDNVIINTGAVIGHDC 133
Query: 356 SLGRWARVQGNGDYNAKL--GITILGEAVTVEDEVVV-INSIVLPN 398
+ GD+ + G+ + G VT+ + + + ++
Sbjct: 134 VI---------GDFVH-IAPGVVLSGG-VTIGEGAFIGAGATIIQG 168
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 7e-04
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 338 VEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLP 397
I ENA++ NS+IG +G + +IL + VT+ V+++SI+
Sbjct: 6 TVIGENAIIKNSVIGDNVRIGD----------GVTITNSILMDNVTIGANSVIVDSIIGD 55
Query: 398 NKVLN 402
N V+
Sbjct: 56 NAVIG 60
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV 346
++G V I A + A I V+I A +GAG +V DV + +VV
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAG-----AVVTKDVP--DGSVV 193
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats) | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGA 325
I +V I P+ + IG NV I A V +G
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36
|
Length = 36 |
| >gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSF-NTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLI 58
++ VI+ GG G+R PLS + PK L G ++Q + + ++ + ++
Sbjct: 1 MMIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVV 56
|
Length = 333 |
| >gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRL---ISCIVLDD-VEIKENAVV-----LNS 349
+ PS+ VHPTA + +V I N +G L IV+ D +++N V+ ++
Sbjct: 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDT 62
Query: 350 IIGWKSSLGRWARVQG-NGDYNAKLGITILGEAVTVEDEVVVINSIV 395
++ +G A + G NA +G+ AV ++ V+ SIV
Sbjct: 63 VLEENGHIGHGAILHGCTIGRNALVGMN----AVVMDGAVIGEESIV 105
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155 |
| >gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVV-----LNS 349
I P+A V P+A + +V I A V + G L + I++ V+
Sbjct: 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPV 73
Query: 350 IIGWKSSLGRWARVQGN--GDYNAKLGI--TILGEAVTVEDEVVVINSIVLPNKVL 401
IG ++G A V G GD N +G+ T+L AV + +V ++V P K +
Sbjct: 74 TIGDDVTIGHGAVVHGCTIGD-NVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEI 128
|
Length = 176 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 307 PTAKIGPNVSIS-----ANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361
IG +I N ++G V + + + DDV I++ + +SI+ + +G+
Sbjct: 4 RGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGC 63
Query: 362 RVQ 364
+
Sbjct: 64 TIP 66
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 304 KVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGW 353
+HPTA + P I NV +G C++ +VEI + V+ + I G
Sbjct: 1 MIHPTAIVDPGAKIGENVEIGPF-----CVIGPNVEIGDGTVIGSHVVIDGP 47
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254 |
| >gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG 59
M V A+I G KG+R + PK PL G+P+++H + A P + +I ++
Sbjct: 1 MMMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVV 54
|
Length = 227 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREF 66
+I+ G KGTR + + PK L + G+PM+ + + I + + ++ +++
Sbjct: 6 IILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISD--DVHVVLHHQKERI 58
Query: 67 ALYVSSISNELKVPVRYLKEDKPH--GSAGGLYYFRDMIMEENPSH--IILLNCD 117
V V + +D + G+ G L M P H +++LN D
Sbjct: 59 KEAVLEYFP----GVIFHTQDLENYPGTGGAL-------MGIEPKHERVLILNGD 102
|
Length = 430 |
| >gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 21/98 (21%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M + VI+ GG K R R K L PL G+P+I+H I L
Sbjct: 2 MTPMTGVILAGG--KSRRMRD------KALLPLNGRPLIEHVIDR------LRPQV---- 43
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKP-HGSAGGLY 97
+ + + + + ++ P G G+
Sbjct: 44 --DVVVISANRNQGRYAEFGLPVVPDELPGFGPLAGIL 79
|
Length = 192 |
| >gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
VI+ GG K R K L L G+P+++H + K P + ++ + ++
Sbjct: 3 GVILAGG--KSRRM-----GGDKALLELGGKPLLEHVLERLK--PLVDEVVISANRDQER 53
Query: 66 FALYVSSISNELKVPVRYLKEDKPH-GSAGGLY 97
+AL V + ++ P G G+
Sbjct: 54 YALL----------GVPVIPDEPPGKGPLAGIL 76
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181 |
| >gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL 329
I + + P IG V I NV +GAGV +
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVI 34
|
Length = 36 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 411 | |||
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.96 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.96 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.96 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.95 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.94 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.94 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.93 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.91 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.91 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.89 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.83 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.82 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.81 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.79 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.76 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.67 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.67 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.66 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.65 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.64 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.64 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.63 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.62 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.61 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.61 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.6 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.6 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.6 | |
| PLN02472 | 246 | uncharacterized protein | 99.59 | |
| PLN02296 | 269 | carbonate dehydratase | 99.59 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.59 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.58 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.57 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.56 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.56 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.56 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.55 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.55 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.54 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.54 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.53 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.53 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.53 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.53 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.52 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.52 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.51 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.51 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.51 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.51 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.51 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.51 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.5 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.5 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.5 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.5 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.5 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.5 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.5 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.49 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.49 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.49 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.49 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.49 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.48 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.48 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.48 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.47 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.47 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.47 | |
| PLN02296 | 269 | carbonate dehydratase | 99.46 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.46 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.46 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.45 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.45 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.44 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.44 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.44 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.44 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.44 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.44 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.43 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.43 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.43 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.43 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.42 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.42 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.41 | |
| PLN02472 | 246 | uncharacterized protein | 99.4 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.4 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.4 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.4 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.4 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.39 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.39 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.39 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.39 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.38 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.38 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.38 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.38 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.38 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.37 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.37 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.36 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 99.36 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.35 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.35 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.34 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.33 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.29 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.29 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.29 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.27 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.26 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.26 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.26 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.24 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.24 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.23 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.23 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.22 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.22 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.22 | |
| PLN02694 | 294 | serine O-acetyltransferase | 99.22 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.22 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.21 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 99.21 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 99.21 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.19 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 99.18 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 99.17 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.17 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 99.16 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 99.16 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.15 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.14 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.13 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 99.13 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 99.13 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 99.13 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 99.11 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.11 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 99.1 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 99.09 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 99.09 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 99.09 | |
| PLN02694 | 294 | serine O-acetyltransferase | 99.09 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 99.09 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.08 | |
| PLN02357 | 360 | serine acetyltransferase | 99.07 | |
| PLN02357 | 360 | serine acetyltransferase | 99.07 | |
| PLN02739 | 355 | serine acetyltransferase | 99.05 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 99.05 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 99.05 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 99.05 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.04 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 99.04 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 99.04 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 99.03 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.01 | |
| PLN02739 | 355 | serine acetyltransferase | 99.0 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.99 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.99 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.98 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.98 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.98 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.97 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.97 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.95 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.95 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.95 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.92 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.91 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.89 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.89 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.88 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.86 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.86 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.85 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.82 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.82 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.8 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 98.79 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.74 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.72 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.7 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.65 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.56 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.52 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.49 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 98.49 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.47 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.45 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 98.36 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.32 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.3 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 98.3 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 98.29 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 98.21 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 98.21 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.1 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.03 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.0 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.99 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.81 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.8 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.72 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.71 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 97.67 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.54 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.48 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.47 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 96.93 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 96.19 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.68 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 95.56 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 95.29 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 93.38 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 92.49 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 92.45 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 91.87 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 91.45 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 91.31 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 90.29 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 89.47 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 88.14 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 88.03 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 87.99 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 87.94 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 87.74 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 86.86 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 86.73 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 86.67 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 86.66 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 86.43 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 86.01 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 85.3 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 85.08 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 84.38 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 84.16 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 82.84 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 82.22 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 81.85 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 81.58 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 81.51 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 81.45 | |
| PF04519 | 101 | Bactofilin: Polymer-forming cytoskeletal; InterPro | 81.27 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 80.46 |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=444.26 Aligned_cols=403 Identities=67% Similarity=1.091 Sum_probs=365.1
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++++||||.|||++|+|||||+.+.||||+||+|+|||.|.++.+++.++..+|++++-++++.+.+++......+...+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 35899999999999999999999999999999999999999999999999999999999999999999998777788899
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+|..++...|+++.|++.++.+....++.++++++|.-++++|+++++.|++.+..++|++++++++++++||.++.|+.
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~ 160 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS 160 (407)
T ss_pred hhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence 99999999999999999999987767899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|+.|.|||.+..++..++|+|+|++++|+.+++....+.+..... +.+.. -.+.+.++.+++.|++..|+.
T Consensus 161 t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~-----~~~~~-l~~g~~d~irLeqDvlspLag 234 (407)
T KOG1460|consen 161 TGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVE-----KDLPL-LQPGPADFIRLEQDVLSPLAG 234 (407)
T ss_pred cCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhh-----hcccc-cCCCccceEEeechhhhhhcC
Confidence 999999999999999999999999999999999999876543211000 00000 122346888999999999999
Q ss_pred CCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCc
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANV 321 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~ 321 (411)
++++|+|...++|..|.|+...+.|++.|++++...++..++++.. +.+.|.+++||+|++.|.|+|+|++|+.||.++
T Consensus 235 ~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pg-t~a~IigdVyIhPsakvhptAkiGPNVSIga~v 313 (407)
T KOG1460|consen 235 SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPG-TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANV 313 (407)
T ss_pred CCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCC-CCceEEeeeEEcCcceeCCccccCCCceecCCc
Confidence 9999999999999999999999999999999999888888887532 347899999999999999999999999999999
Q ss_pred EECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcc----cceeEECCCCEECCCcEEcceEEcC
Q 015225 322 RVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAK----LGITILGEAVTVEDEVVVINSIVLP 397 (411)
Q Consensus 322 ~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~----~~~~~i~~~~~i~~~~~v~~~~i~~ 397 (411)
+||+|++|.+|+|.++|.|.+|+.+-+|+||.++.||..+++.+.+-.++. .+.++.|+.+.+++.+.|.+|++.|
T Consensus 314 rvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 314 RVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred eecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 999999999999999999999999999999999999999999986554432 3559999999999999999999999
Q ss_pred CCEEcCCCCCcccC
Q 015225 398 NKVLNVSVQEEIIL 411 (411)
Q Consensus 398 ~~~v~~~~~~~~~~ 411 (411)
+.+++.++++||+|
T Consensus 394 ~k~l~vs~~~eIil 407 (407)
T KOG1460|consen 394 NKELNVSVQDEIIL 407 (407)
T ss_pred CCccceeeecceeC
Confidence 99999999999987
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-57 Score=401.14 Aligned_cols=348 Identities=32% Similarity=0.588 Sum_probs=304.6
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHH-hhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYV-SSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~-~~~~~~~~~~ 80 (411)
+.|+|+||.|| .|+||+|||..+||||+|++|+|||+|++++|.++ |+++|++.++++.+.+..++ +.+...+|++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVe 84 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVE 84 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceE
Confidence 36899999999 99999999999999999999999999999999997 99999999998877555554 4444567878
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
+.+..|.++.|+++.+..+++++-...+.+|+|++||.++..++++++++|+++++++|++.+++ ++++.||.+..|.
T Consensus 85 i~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v--depSkyGvv~~d~ 162 (371)
T KOG1322|consen 85 ILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV--DEPSKYGVVVIDE 162 (371)
T ss_pred EEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec--cCccccceEEEec
Confidence 88888888899999999999988644344899999999999999999999999999999999999 8899999999994
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
.+++|.+|.|||....+...++|+|+|+|++++.+... + -+|+.++++.++
T Consensus 163 ~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~--------------------------p---tSiekEifP~~a 213 (371)
T KOG1322|consen 163 DTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLR--------------------------P---TSIEKEIFPAMA 213 (371)
T ss_pred CCCceeEehhCchhhhhccccceEEEECHHHHhHhhhc--------------------------c---cchhhhhhhhhh
Confidence 49999999999998888899999999999999877621 1 126689999999
Q ss_pred CCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCC
Q 015225 241 GKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISAN 320 (411)
Q Consensus 241 ~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~ 320 (411)
+..++++|.++|||.||++|.||+.+...|++......+.- ..+++.+.+++.+.+-+.+|.+|+|+++++||++
T Consensus 214 ~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r-----~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r 288 (371)
T KOG1322|consen 214 EEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPR-----LLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPR 288 (371)
T ss_pred hcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcc-----ccCCccccccEeeccccccCCccEECCCceECCC
Confidence 99999999999999999999999999888887664422221 1234677888999999999999999999999999
Q ss_pred cEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcC
Q 015225 321 VRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLP 397 (411)
Q Consensus 321 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~ 397 (411)
|+|+++++|.+|+|+.+.+++.++.|.+++++.++.||.+++|.+. ++||+++.|-+.-.+.+..+.|
T Consensus 289 ~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~---------a~lG~nV~V~d~~~vn~g~~l~ 356 (371)
T KOG1322|consen 289 VRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN---------AVLGKNVIVADEDYVNEGSGLP 356 (371)
T ss_pred cEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc---------cEeccceEEecccccccceeEE
Confidence 9999999999999999999999999999999999999999999987 9999999998777774333333
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=417.10 Aligned_cols=319 Identities=33% Similarity=0.539 Sum_probs=279.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+|+||||||| +||||+|+|..+||||+||+|+|||+|+|++|+++ |++++++.+++..+.+++++.+. ..++.++.
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~ 76 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDG-EGLGVRIT 76 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcc-cccCCceE
Confidence 4899999999 99999999999999999999999999999999997 99999999999999999999985 45688999
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
++.+....||+++|+.+.+++. .++|++++||.+++.++..++++|+++.+.+++...+. .++..||.+..+..+
T Consensus 77 y~~e~~~lGTag~l~~a~~~l~---~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~--~~~~~~Gvv~~~~~~ 151 (358)
T COG1208 77 YVVEKEPLGTAGALKNALDLLG---GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRV--LDPSEFGVVETDDGD 151 (358)
T ss_pred EEecCCcCccHHHHHHHHHhcC---CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEec--CCCCcCceEEecCCC
Confidence 9999889999999999999996 48999999999999999999999998888888888887 555889988887333
Q ss_pred CceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 163 KELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 163 ~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++|.++.|||. ...+++.++|+|+|+|++|+.+.. ....++..++++.++
T Consensus 152 ~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~----------------------------~~~~~~~~~~~~~l~ 203 (358)
T COG1208 152 GRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEK----------------------------GERFDFEEELLPALA 203 (358)
T ss_pred ceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhccc----------------------------CCcccchhhHHHHHH
Confidence 59999999983 566789999999999999995442 234445467999999
Q ss_pred CCCc-eEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccC--CCCCCcEEcCCcEECCCCEECCCCEECCCcEE
Q 015225 241 GKKQ-LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASG--NGITSATIAGDVYIHPSAKVHPTAKIGPNVSI 317 (411)
Q Consensus 241 ~~~~-v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~i 317 (411)
+.+. ++++.+.++|.||++|++|+++++.+++............. .... +.+.++++|++++.|++++.|+++++|
T Consensus 204 ~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~i 282 (358)
T COG1208 204 AKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVI 282 (358)
T ss_pred hCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEE
Confidence 8886 99999999999999999999999999875533211000000 0123 788999999999999999999999999
Q ss_pred CCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 318 SANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 318 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
|++|.||+++.|.+|+|+++|.|+++++|.+|+|+++|.||+
T Consensus 283 g~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 283 GEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 999999999999999999999999999999999999999999
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=401.49 Aligned_cols=355 Identities=21% Similarity=0.348 Sum_probs=257.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| +|+||+|+|..+||+|+|++|+ |||+|+|++|.++ |+++|+|++++..+.+++|+++. +.|+.
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~ 76 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIG-SPWDL 76 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCC-Ccccc
Confidence 899999999999 9999999999999999999999 8999999999997 99999999999999999999764 34543
Q ss_pred c-----eE----EeeCCC---CCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCc
Q 015225 80 P-----VR----YLKEDK---PHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSA 147 (411)
Q Consensus 80 ~-----i~----~v~~~~---~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 147 (411)
. +. +..+.+ ..|++++++.+++++....+++|+|++||.+++.++.++++.|.+.++++++++...+.
T Consensus 77 ~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~ 156 (380)
T PRK05293 77 DRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPW 156 (380)
T ss_pred cCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcch
Confidence 2 23 333322 47999999999999863334789999999999999999999999888888888776644
Q ss_pred ccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHH-hhhhhhcccccccccccchhhhhhhcccCCCC
Q 015225 148 ESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTA-IQGVLTHREDRANIRQVSSFEALQSATRTLPV 226 (411)
Q Consensus 148 ~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
+++..||.+..| ++++|..+.|||..+.+++.++|+|+|++++|.. +.+..... .
T Consensus 157 ~~~~~yG~v~~d-~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-----------------------~ 212 (380)
T PRK05293 157 EEASRFGIMNTD-ENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNP-----------------------N 212 (380)
T ss_pred hhccccCEEEEC-CCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcC-----------------------C
Confidence 677889999988 6789999999997767889999999999998753 33221100 1
Q ss_pred ceeeeccchhhcccCC-CceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccC-CCCCCcEEcCCcEECCCCE
Q 015225 227 DFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASG-NGITSATIAGDVYIHPSAK 304 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 304 (411)
+..++.+++++.++++ .++++|..+++|.+++++++|+++++.++...... .++... ...+...+.++++|++++
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~- 289 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENA- 289 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCC-
Confidence 1122337899988866 47999999999999999999999998887654321 111110 000122233344444433
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
.|. ++.||++|.|+ ..+.+|+||++|.|+++|+|.+|+|++++.||+++++.+ |+|++++.|
T Consensus 290 -----~i~-~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~----------~ii~~~~~i 351 (380)
T PRK05293 290 -----KVK-NSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER----------AIIGENAVI 351 (380)
T ss_pred -----EEe-cCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeE----------EEECCCCEE
Confidence 332 45555555554 234566666666666666666666666666666666655 666666666
Q ss_pred CCCcEEcc-----eEEcCCCEEcCC
Q 015225 385 EDEVVVIN-----SIVLPNKVLNVS 404 (411)
Q Consensus 385 ~~~~~v~~-----~~i~~~~~v~~~ 404 (411)
+.++.+.+ .+||.++.|..+
T Consensus 352 ~~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 352 GDGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred CCCCEEcCCCceeEEEeCCCCCCCC
Confidence 66666633 556666555543
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=396.42 Aligned_cols=336 Identities=22% Similarity=0.345 Sum_probs=250.4
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| +|+||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|++++..+.+.+|+...+...+.
T Consensus 3 ~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 3 MPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 778999999999 9999999999999999999999 9999999999997 99999999999999999999753211122
Q ss_pred ceEEee---CC------CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccc
Q 015225 80 PVRYLK---ED------KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 80 ~i~~v~---~~------~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (411)
.+.++. +. ...||+++++.+++++.+...++|++++||++++.++.+++++|.++++++++++.+.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~ 159 (407)
T PRK00844 80 LGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEA 159 (407)
T ss_pred CCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHc
Confidence 223331 11 257999999999999964323569999999999999999999999888888888876654677
Q ss_pred cceeEEEEcCCCCceeEEeccCCCcc-------cCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhccc
Q 015225 151 HQFGELIADPNTKELLHYTEKPETFV-------SDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATR 222 (411)
Q Consensus 151 ~~~g~v~~d~~~~~v~~~~e~~~~~~-------~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
..||.+..| ++++|..+.|||..+. +.++++|+|+|++++| +.|.+....
T Consensus 160 ~~~Gvv~~d-~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~--------------------- 217 (407)
T PRK00844 160 SAFGVIEVD-PDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAAD--------------------- 217 (407)
T ss_pred ccCCEEEEC-CCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcC---------------------
Confidence 889999998 6789999999986432 4689999999999986 556542111
Q ss_pred CCCCceeeeccchhhcccCCCceEEEee------------cceeeecCCccchhhcchHHHhhhhhc---CccccccC--
Q 015225 223 TLPVDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSSLYLALFKIT---SPQLLASG-- 285 (411)
Q Consensus 223 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~------------~~~~~~I~t~~d~~~a~~~~l~~~~~~---~~~~~~~~-- 285 (411)
+.+.+++.+|+++.+++++++++|.. ++||.|+++|++|+++++.++...... .+.....+
T Consensus 218 --~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~ 295 (407)
T PRK00844 218 --EDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSS 295 (407)
T ss_pred --CcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccC
Confidence 01223454799999998889999965 589999999999999999999643210 00000000
Q ss_pred -CCCCC--------cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCE
Q 015225 286 -NGITS--------ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSS 356 (411)
Q Consensus 286 -~~~~~--------~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ 356 (411)
..++. ..+.++++||+++.|+ ++.|. +++||++|.|+++|+|.+|+|+++|+|+++|+|.+|+|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~ 373 (407)
T PRK00844 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVV 373 (407)
T ss_pred CCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Confidence 00000 1123345666666666 66665 5677777777777777777777777777777777777777777
Q ss_pred ECCCcEEec
Q 015225 357 LGRWARVQG 365 (411)
Q Consensus 357 ig~~~~i~~ 365 (411)
|++++++.+
T Consensus 374 i~~~~~i~~ 382 (407)
T PRK00844 374 VPPGATIGV 382 (407)
T ss_pred ECCCCEECC
Confidence 777766655
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=374.26 Aligned_cols=336 Identities=23% Similarity=0.367 Sum_probs=266.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|+++.|+||||| .|+||.|||..++||.+|++|+ .||+.+|++|.++ |+.+|.|++.+....+.+|++.++ .|+.
T Consensus 3 ~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~-~w~l 78 (393)
T COG0448 3 KKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGW-PWDL 78 (393)
T ss_pred ccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCC-cccc
Confidence 457899999999 9999999999999999999999 8999999999996 999999999999889999999874 3432
Q ss_pred -----ceEEeeC-------CCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCc
Q 015225 80 -----PVRYLKE-------DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSA 147 (411)
Q Consensus 80 -----~i~~v~~-------~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 147 (411)
.+.+++. .+..||++++++-+.++.+...+.++++.||+++..|+.+++++|.+.++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 3444432 2466999999999998887779999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEcCCCCceeEEeccCCC-cccC-cccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCC
Q 015225 148 ESAHQFGELIADPNTKELLHYTEKPET-FVSD-LINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTL 224 (411)
Q Consensus 148 ~~~~~~g~v~~d~~~~~v~~~~e~~~~-~~~~-~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (411)
++++.||.+..| ++++|++|.|||.. +.++ ++.+|+|+|+.++|. .|.+... -
T Consensus 159 ~eas~fGim~~D-~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~-----------------------~ 214 (393)
T COG0448 159 EEASRFGVMNVD-ENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAK-----------------------D 214 (393)
T ss_pred HhhhhcCceEEC-CCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhc-----------------------c
Confidence 999999999999 89999999999977 4444 799999999998764 4443321 1
Q ss_pred CCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCC-CCCCcEEcCCcEECCCC
Q 015225 225 PVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGN-GITSATIAGDVYIHPSA 303 (411)
Q Consensus 225 ~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 303 (411)
+.+..+|..++++.+.+.+.+++|++.|||.||+|.+.|++||+++++.-.. -.+....+ .-+.....+|+++..++
T Consensus 215 ~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~--~~lyd~~w~IyT~~~~~pPak~~~~s 292 (393)
T COG0448 215 PNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPE--LNLYDRNWPIYTKNKNLPPAKFVNDS 292 (393)
T ss_pred cCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCc--ccccCCCCceeecCCCCCCceEecCc
Confidence 2356677799999999999999999999999999999999999999882211 01111110 01233334444444333
Q ss_pred -----EECCCCEECC---CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 304 -----KVHPTAKIGP---NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 304 -----~v~~~~~i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.|+.||+|.+ +|+|+.+++|+++|+|.+|+|+.+|.||+||+|.++||..+|.|+++++|+++
T Consensus 293 ~v~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 293 EVSNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eEeeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3445555553 56777777777777777777777777777777777777777777777777765
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-49 Score=385.35 Aligned_cols=331 Identities=21% Similarity=0.345 Sum_probs=258.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc--cC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN--EL 77 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~--~~ 77 (411)
|++++||||||| +|+||+|+|..+||+|+|++|+ |||+|+|++|.++ |+++|+|++++..+.+++|+.+.+. .+
T Consensus 1 m~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~ 77 (429)
T PRK02862 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGF 77 (429)
T ss_pred CCcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCcccc
Confidence 899999999999 9999999999999999999999 9999999999997 9999999999988899999975321 01
Q ss_pred Ccc-eEEe--eCC-----CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCccc
Q 015225 78 KVP-VRYL--KED-----KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAES 149 (411)
Q Consensus 78 ~~~-i~~v--~~~-----~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (411)
... +.+. .+. ...||+++++.+++++.+..+++|+|++||++++.++..+++.|++.++++|+++.+.+.++
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 111 2221 121 12799999999999986433478999999999999999999999988888898887765456
Q ss_pred ccceeEEEEcCCCCceeEEeccCCCc---------------------ccCcccceEEEeCHHHHHHh-hhhhhccccccc
Q 015225 150 AHQFGELIADPNTKELLHYTEKPETF---------------------VSDLINCGVYVFTPDFFTAI-QGVLTHREDRAN 207 (411)
Q Consensus 150 ~~~~g~v~~d~~~~~v~~~~e~~~~~---------------------~~~~~~~Giyi~~~~~~~~l-~~~~~~~~~~~~ 207 (411)
+..||++..| ++++|..|.|||... ..+++++|+|+|++++|..+ .+..
T Consensus 158 ~~~yG~i~~d-~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-------- 228 (429)
T PRK02862 158 ASGFGLMKTD-DDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-------- 228 (429)
T ss_pred cccceEEEEC-CCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC--------
Confidence 7889999998 688999999998632 23588999999999998543 3311
Q ss_pred ccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCcccccc---
Q 015225 208 IRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLAS--- 284 (411)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~--- 284 (411)
+..++..++++.+++++++++|..++||.++++|++|+++++.++....... .++..
T Consensus 229 -------------------~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~-~~~~~~~~ 288 (429)
T PRK02862 229 -------------------EYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPF-SFYDEKAP 288 (429)
T ss_pred -------------------ChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcc-cccCCCCc
Confidence 1123436888888888899999999999999999999999999873221100 00000
Q ss_pred ----CCC-C----CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECC-------------------
Q 015225 285 ----GNG-I----TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLD------------------- 336 (411)
Q Consensus 285 ----~~~-~----~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~------------------- 336 (411)
... + ..+.+. +++||+++.| +++.|. +++||++|.||++|+|.+|+|+.
T Consensus 289 i~~~~~~~~~a~~~~~~~~-~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~ 365 (429)
T PRK02862 289 IYTRARYLPPSKLLDATIT-ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKP 365 (429)
T ss_pred eeccCCCCCCccccccEEE-eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCc
Confidence 000 0 133333 4688888888 778886 68888888888888888888875
Q ss_pred CCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 337 DVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 337 ~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+|.||++|.|.+|+|+++|.||+++++.+.
T Consensus 366 ~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 366 PLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred ccEECCCCEEEEEEECCCcEECCCcEEecC
Confidence 688888888888888888888888888764
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=384.88 Aligned_cols=330 Identities=20% Similarity=0.336 Sum_probs=262.8
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| +|+||+|+|..+||||+|++|+ |||+|+|++|.++ |+++|+|++++..+.+++|++..+. |+.
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~-~~~ 76 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYN-FGN 76 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCC-CCC
Confidence 899999999999 9999999999999999999997 9999999999997 9999999999999999999986321 221
Q ss_pred c-------eEEe--eCC-----CCCCChHHHHHHHHHhhccC---CCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEE
Q 015225 80 P-------VRYL--KED-----KPHGSAGGLYYFRDMIMEEN---PSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLV 142 (411)
Q Consensus 80 ~-------i~~v--~~~-----~~~g~~~~l~~~~~~i~~~~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~ 142 (411)
. +.+. .+. +..|++++++.++.++.+.. +++|++++||.+++.++.+++++|+++++++|+++
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~ 156 (436)
T PLN02241 77 GGNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIAC 156 (436)
T ss_pred CcccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEE
Confidence 1 2222 221 35799999999887765322 47899999999999999999999999999999999
Q ss_pred EecCcccccceeEEEEcCCCCceeEEeccCCCcc---------------------cCcccceEEEeCHHHHHHh-hhhhh
Q 015225 143 IKVSAESAHQFGELIADPNTKELLHYTEKPETFV---------------------SDLINCGVYVFTPDFFTAI-QGVLT 200 (411)
Q Consensus 143 ~~~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~---------------------~~~~~~Giyi~~~~~~~~l-~~~~~ 200 (411)
.++..+++..||++..| ++++|+.+.|||..+. .++.++|+|+|++++|..+ .+..+
T Consensus 157 ~~v~~~~~~~ygvv~~d-~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~ 235 (436)
T PLN02241 157 LPVDESRASDFGLMKID-DTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFP 235 (436)
T ss_pred EecchhhcCcceEEEEC-CCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcc
Confidence 88754567889999998 7889999999985432 3789999999999998544 43211
Q ss_pred cccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC-CceEEEeecceeeecCCccchhhcchHHHhhhhhcCc
Q 015225 201 HREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSP 279 (411)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~ 279 (411)
. ...+..++++.++.+ .++++|..++||.++++|++|+++++.++..... .
T Consensus 236 ~--------------------------~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~--~ 287 (436)
T PLN02241 236 T--------------------------ANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPK--F 287 (436)
T ss_pred c--------------------------ccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCch--h
Confidence 0 012337889988877 4899999999999999999999999999874321 1
Q ss_pred cccccC-------CC-C----CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECC-----------
Q 015225 280 QLLASG-------NG-I----TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLD----------- 336 (411)
Q Consensus 280 ~~~~~~-------~~-~----~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~----------- 336 (411)
.++... .. + .++.+.+ ++|+++++|+ +|.|+ +++|+++|.||++|+|.+|+|+.
T Consensus 288 ~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~ 364 (436)
T PLN02241 288 SFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIA 364 (436)
T ss_pred hccCCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccc
Confidence 111110 00 0 2333333 6788888888 88886 78999999999999999988866
Q ss_pred -----C---CEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 337 -----D---VEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 337 -----~---~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+ ++|+++|.+.+++|+++|.||+++.+.+.
T Consensus 365 ~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~ 402 (436)
T PLN02241 365 SLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINK 402 (436)
T ss_pred cccccCCcceEECCCCEEcceEecCCCEECCCcEEecc
Confidence 2 38999999999999999999999988764
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=374.46 Aligned_cols=345 Identities=22% Similarity=0.316 Sum_probs=284.8
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEeccc-chHHHHHHHhhhcccCCcceEE
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY-EEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+||||||| .|+||+|+|..+||+|+|++|+|||+|++++|.+. ++++|++++++ ..+.+.+++++. ..|+.++.+
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~ 76 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITY 76 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEE
Confidence 58999999 99999999999999999999999999999999997 99999998888 888899998763 457777888
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
+.+....|++++++.+++++. .++|++++||.+++.++.++++.|.++++++++++.+. .++..|+.+..| +++
T Consensus 77 ~~~~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~~~~~-~~~ 150 (353)
T TIGR01208 77 IVQGEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKV--RDPTAFGVAVLE-DGK 150 (353)
T ss_pred EECCCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEEC--CChhhCeEEEEc-CCC
Confidence 777778899999999999885 46899999999999999999999998899989888876 567789988877 567
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 243 (411)
+|..+.|+|..+.+.+.++|+|+|++.+++.+.+..+.. .+.+.+ .++++.+++++
T Consensus 151 ~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~-----------------------~~e~~l-~d~l~~l~~~g 206 (353)
T TIGR01208 151 RILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW-----------------------RGELEI-TDAIQWLIEKG 206 (353)
T ss_pred cEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC-----------------------CCcEEH-HHHHHHHHHcC
Confidence 899999999877788999999999998888876532110 122334 78899888765
Q ss_pred -ceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCcE
Q 015225 244 -QLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVR 322 (411)
Q Consensus 244 -~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~ 322 (411)
++++|..+++|.+|++|++|+++++.++.+.... +. + ..+.+.+.++++|++++.| +++.|.++++||++|.
T Consensus 207 ~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~---~~--~-i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~ 279 (353)
T TIGR01208 207 YKVGGSKVTGWWKDTGKPEDLLDANRLILDEVERE---VQ--G-VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCI 279 (353)
T ss_pred CeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccc---cC--C-cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCE
Confidence 7999999999999999999999999998753221 11 1 2345677788888888888 7788877888888888
Q ss_pred ECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCc-EEecCCcCCcccceeEECCCCEECCCcEEc---ceEEcC
Q 015225 323 VGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWA-RVQGNGDYNAKLGITILGEAVTVEDEVVVI---NSIVLP 397 (411)
Q Consensus 323 i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~-~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~---~~~i~~ 397 (411)
|+ ++.|. +|+|+++|.|+ +|.|.+|+|++++.|+.++ ++.+ +++++++.|+.++.+. +.++|.
T Consensus 280 I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~----------~ii~~~~~i~~~~~~~~~~~~~~g~ 347 (353)
T TIGR01208 280 IE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVD----------SVIGKKVRIKGNRRRPGDLRLTIGD 347 (353)
T ss_pred Ec-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeec----------CEEcCCCEECCCcccccccceEEcC
Confidence 87 44444 67777777776 6777889999999998884 7766 8999999999999884 467887
Q ss_pred CCEEc
Q 015225 398 NKVLN 402 (411)
Q Consensus 398 ~~~v~ 402 (411)
.++|.
T Consensus 348 ~~~~~ 352 (353)
T TIGR01208 348 YSQVE 352 (353)
T ss_pred Cceec
Confidence 77663
|
Alternate name: dTDP-D-glucose synthase |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=377.15 Aligned_cols=337 Identities=18% Similarity=0.284 Sum_probs=248.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcc-hhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhccc---
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQP-MIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNE--- 76 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~p-li~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~--- 76 (411)
|++++||||||| +|+||+|+|..+||+|+|++|+| ||+|+|++|.++ |+++|+|++++..+.+.+|+.+.+..
T Consensus 13 ~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 89 (425)
T PRK00725 13 TRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFRE 89 (425)
T ss_pred hcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhccccc
Confidence 367999999999 99999999999999999999996 999999999997 99999999999999999999763211
Q ss_pred -CCcceEEee-------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcc
Q 015225 77 -LKVPVRYLK-------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAE 148 (411)
Q Consensus 77 -~~~~i~~v~-------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 148 (411)
.+..+.+.. +.+..||+++++.+++++....+++|+|++||++++.++.+++++|.++++++++++.+.+.+
T Consensus 90 ~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 90 ELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 011122221 223579999999999999643357899999999999999999999999999899888776556
Q ss_pred cccceeEEEEcCCCCceeEEeccCCCc-------ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhc
Q 015225 149 SAHQFGELIADPNTKELLHYTEKPETF-------VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSA 220 (411)
Q Consensus 149 ~~~~~g~v~~d~~~~~v~~~~e~~~~~-------~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (411)
++..||++..| ++++|..|.|||..+ .+.++++|+|+|++++| +.|.+.....
T Consensus 170 ~~~~yG~v~~d-~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~------------------ 230 (425)
T PRK00725 170 EASAFGVMAVD-ENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDP------------------ 230 (425)
T ss_pred hcccceEEEEC-CCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCC------------------
Confidence 77899999998 678999999998643 25789999999999976 5565421100
Q ss_pred ccCCCCceeeeccchhhcccCCCceEEEeec-----------ceeeecCCccchhhcchHHHhhhhhc-----Ccccccc
Q 015225 221 TRTLPVDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSSLYLALFKIT-----SPQLLAS 284 (411)
Q Consensus 221 ~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-----------~~~~~I~t~~d~~~a~~~~l~~~~~~-----~~~~~~~ 284 (411)
.+..++.+|+++.+++++++++|... +||.|+++|++|+++++.++...... ...+..+
T Consensus 231 -----~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~ 305 (425)
T PRK00725 231 -----NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTY 305 (425)
T ss_pred -----CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccC
Confidence 11223447999999988899999875 59999999999999999998632110 0000000
Q ss_pred CCC-CC--------Cc-EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCC
Q 015225 285 GNG-IT--------SA-TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWK 354 (411)
Q Consensus 285 ~~~-~~--------~~-~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~ 354 (411)
... ++ ++ ....+++|++++.| ++|.|. +|+||++|.||++|+|.+|+|+++|.||++|.|.+|+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 306 QEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 000 00 00 11224566666666 566665 56777777777777777777777777777777777777777
Q ss_pred CEECCCcEEecC
Q 015225 355 SSLGRWARVQGN 366 (411)
Q Consensus 355 ~~ig~~~~i~~~ 366 (411)
+.|+++++|+.+
T Consensus 384 ~~i~~~~~i~~~ 395 (425)
T PRK00725 384 CVIPEGMVIGED 395 (425)
T ss_pred CEECCCCEECCC
Confidence 666666666543
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=373.47 Aligned_cols=346 Identities=17% Similarity=0.270 Sum_probs=262.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchH-HHHHHHhhhcccCCc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEER-EFALYVSSISNELKV 79 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~-~i~~~~~~~~~~~~~ 79 (411)
..|+||||||| +|+||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|++++..+ .+++|+.+. ..|+.
T Consensus 1 ~~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~ 76 (369)
T TIGR02092 1 NKMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSG-REWDL 76 (369)
T ss_pred CcEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCC-CCCCc
Confidence 36899999999 9999999999999999999999 9999999999997 99999999998775 899999763 34665
Q ss_pred ce------EEeeCCC-CC--CChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccc
Q 015225 80 PV------RYLKEDK-PH--GSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 80 ~i------~~v~~~~-~~--g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (411)
++ .++.++. .. |++++++.+++++....+++|+|++||++++.++.+++++|+++++++|+++.++..+++
T Consensus 77 ~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 77 HRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred ccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 43 2223322 32 556678888888853234789999999999999999999999999999999988733356
Q ss_pred cceeE-EEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCce
Q 015225 151 HQFGE-LIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDF 228 (411)
Q Consensus 151 ~~~g~-v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (411)
..||. +..| +++++..+.+++........++|+|+|+++++ +.+.+.... ...
T Consensus 157 ~~~g~vv~~~-~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~------------------------~~~ 211 (369)
T TIGR02092 157 SEYDTILRFD-ESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQR------------------------GKL 211 (369)
T ss_pred cccCcEEEEc-CCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhc------------------------Ccc
Confidence 77854 4566 56788777543322234567899999999865 444332111 011
Q ss_pred eeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCC--CCCcEEcCCcEECCCCEEC
Q 015225 229 VRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNG--ITSATIAGDVYIHPSAKVH 306 (411)
Q Consensus 229 ~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~v~ 306 (411)
..+ .++++.++.+++++++..+++|.|++|+++|+++++.+++.+... ..+..... .....+.++++ |+
T Consensus 212 ~~~-~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~------i~ 282 (369)
T TIGR02092 212 TSL-EELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTKVKDEPPTY------YA 282 (369)
T ss_pred ccH-HHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeeccCCCCCcE------Ec
Confidence 112 578888877779999999999999999999999999998775421 11101000 00111224444 44
Q ss_pred CCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 307 PTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 307 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
++|.| ++++||++|.|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++++.+ |+||++++|++
T Consensus 283 ~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~----------~ii~~~~~v~~ 349 (369)
T TIGR02092 283 ENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN----------VIIDKDVVIEP 349 (369)
T ss_pred CCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE----------EEECCCCEECC
Confidence 55555 478899999996 468999999999999999999999999999999999988 99999999999
Q ss_pred CcEEcceEEcCC
Q 015225 387 EVVVINSIVLPN 398 (411)
Q Consensus 387 ~~~v~~~~i~~~ 398 (411)
++.+.+..+.|.
T Consensus 350 ~~~~~~~~~~~~ 361 (369)
T TIGR02092 350 NVKIAGTSEQPL 361 (369)
T ss_pred CCEeCCCCCccE
Confidence 988866654443
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=352.68 Aligned_cols=352 Identities=21% Similarity=0.328 Sum_probs=295.6
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
+++.+|||||| +|+||.+ ..||.|.|++|+||++|+++....+ +.+++.+|.++..+.+++.+.+. . ++
T Consensus 1 ~~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~----~-~v 69 (460)
T COG1207 1 MSLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAER----D-DV 69 (460)
T ss_pred CCceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccc----c-Cc
Confidence 35889999999 9999998 9999999999999999999999998 89999999898888888887751 1 68
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.|+.|.++.||+++++++++++.+..++++||++||++. ...|..+++.|...++.++++++.. .+|..||++..+
T Consensus 70 ~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~ 147 (460)
T COG1207 70 EFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRD 147 (460)
T ss_pred eEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEc
Confidence 999999999999999999999954446789999999985 5668999999999999999999998 999999999999
Q ss_pred CCCCceeEEeccCCC----cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 160 PNTKELLHYTEKPET----FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
++++|..+.|..+. ..-...|+|+|+|+.. ++++|.+ ..+.+++.+||| +|
T Consensus 148 -~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~----l~nnNaqgEYYL-------------------TD 203 (460)
T COG1207 148 -GNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPK----LSNNNAQGEYYL-------------------TD 203 (460)
T ss_pred -CCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHH----hccccccCcEeH-------------------HH
Confidence 78899999987542 3467889999999986 5556554 344566677776 77
Q ss_pred hhhcccCC-CceEEEeeccee--eecCCccchhhcchHHHhhhhhcCccccccC---CCCCCcEEcCCcEECCCCEECCC
Q 015225 235 ILSPLAGK-KQLYTYETMDFW--EQIKTPGMSLKCSSLYLALFKITSPQLLASG---NGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 235 ~l~~l~~~-~~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
++..+-+. .++.++...++. .-+++-..+-.+.+.+.++... .++..+ -.+...++.+.+.||+++.|.++
T Consensus 204 vI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~---~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~ 280 (460)
T COG1207 204 VIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAE---KLMLAGVTLIDPATTYIRGDVEIGRDVVIEPN 280 (460)
T ss_pred HHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHH---HHHHcCcEEeCCCeEEEcCcEEECCceEEecC
Confidence 77766544 478888777643 4456666777777766655533 222222 12457788999999999999999
Q ss_pred CEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCc
Q 015225 309 AKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEV 388 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 388 (411)
+.|.+++.||++|+||++|+|.||.|++++.|..+|+|.+|.+++++.||+++++.++ +.|+++++||..+
T Consensus 281 v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg---------~~L~~~~hIGNFV 351 (460)
T COG1207 281 VILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPG---------AVLGADVHIGNFV 351 (460)
T ss_pred cEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCc---------CcccCCCeEeeeE
Confidence 9999999999999999999999999999999999999999999999999999999999 8888888888888
Q ss_pred EEcceEEcCCCEEc
Q 015225 389 VVINSIVLPNKVLN 402 (411)
Q Consensus 389 ~v~~~~i~~~~~v~ 402 (411)
.++++.||.|+.+.
T Consensus 352 EvK~a~ig~gsKa~ 365 (460)
T COG1207 352 EVKKATIGKGSKAG 365 (460)
T ss_pred EEecccccCCcccc
Confidence 88888888777664
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=365.86 Aligned_cols=340 Identities=21% Similarity=0.336 Sum_probs=268.3
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccC---Ccce
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNEL---KVPV 81 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~---~~~i 81 (411)
||||||| +|+||+|+|..+||+|+|++|+ |||+|++++|.++ |+++|+|+++++.+.+.+++.+.+... ...+
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFV 77 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCE
Confidence 6999999 9999999999999999999999 8999999999997 999999999988888999987532110 1123
Q ss_pred EEee-------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 82 RYLK-------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 82 ~~v~-------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
++.. +....|++++++.+++++....+++|++++||++++.++.++++.|++.++++++++.+.+.+++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 4322 122479999999999988543347899999999999999999999988888888888776556778899
Q ss_pred EEEEcCCCCceeEEeccCCCcccC-------cccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCC
Q 015225 155 ELIADPNTKELLHYTEKPETFVSD-------LINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPV 226 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~~~~~~~-------~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
++..| ++++|..+.|||..+... +.++|+|+|+++++ +.+.+..... .
T Consensus 158 ~v~~d-~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-----------------------~ 213 (361)
T TIGR02091 158 VMQVD-EDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDP-----------------------E 213 (361)
T ss_pred EEEEC-CCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcC-----------------------C
Confidence 99998 678999999998655444 78999999999987 4444321110 0
Q ss_pred ceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEE-cCCcEECCCCEE
Q 015225 227 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATI-AGDVYIHPSAKV 305 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~v 305 (411)
...++..++++.+++++++++|..+++|.|++++++|+++++.++.+..... .... ...+ ....++.+.+++
T Consensus 214 ~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~i 286 (361)
T TIGR02091 214 SSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDR-----KWPIYTYNEFLPPAKFV 286 (361)
T ss_pred cccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--cccc-----CCceecCCCCCCCceEe
Confidence 1122336889999988899999999999999999999999999987543211 1110 0000 112244555566
Q ss_pred CCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEEC
Q 015225 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE 385 (411)
Q Consensus 306 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~ 385 (411)
++++.|. +++||++|+|+++ +|.+|+|+++|+|+++|+|.+|+|++++.||+++++.+ |+||++++|+
T Consensus 287 ~~~~~i~-~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~----------~ivg~~~~i~ 354 (361)
T TIGR02091 287 DSDAQVV-DSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN----------AIIDKNVRIG 354 (361)
T ss_pred cCCCEEE-CCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee----------eEECCCCEEC
Confidence 6666554 7899999999976 88999999999999999999999999999999999976 9999999999
Q ss_pred CCcEEc
Q 015225 386 DEVVVI 391 (411)
Q Consensus 386 ~~~~v~ 391 (411)
.++.+.
T Consensus 355 ~~~~i~ 360 (361)
T TIGR02091 355 EGVVIG 360 (361)
T ss_pred CCCEeC
Confidence 988764
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=364.13 Aligned_cols=345 Identities=21% Similarity=0.314 Sum_probs=276.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++++||||||| .|+||++ ..||+|+|++|+|||+|+|++|.++ +++++++++++..+.+.+++.+. ..
T Consensus 1 m~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~-----~~ 69 (459)
T PRK14355 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGD-----GD 69 (459)
T ss_pred CCcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccC-----Cc
Confidence 889999999999 9999986 8899999999999999999999997 99999999988877888888652 14
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.+....|++++++.+++++.+ ..++|++++||.+ .+.+++.+++.|.+.+++++++..+. .++..|+.+..
T Consensus 70 i~~~~~~~~~Gt~~al~~a~~~l~~-~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~ 146 (459)
T PRK14355 70 VSFALQEEQLGTGHAVACAAPALDG-FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVR 146 (459)
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc-cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEE
Confidence 6676677778999999999999852 1368999999984 46778999999988888888877776 66778898888
Q ss_pred cCCCCceeEEeccCCC----cccCcccceEEEeCHHH-HHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 159 DPNTKELLHYTEKPET----FVSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
| ++++|..+.|+|.. ..+++.++|+|+|++++ ++.+.+..+.. ..+.+.+ +
T Consensus 147 d-~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~ 202 (459)
T PRK14355 147 D-ADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDN----------------------AQGEYYL-T 202 (459)
T ss_pred c-CCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccc----------------------cCCceeH-H
Confidence 8 67899999987522 12468899999999986 45554432110 0122334 7
Q ss_pred chhhcccCCC-ceEEEeecce--eeecCCccchhhcchHHHhhhhhc----CccccccCCCCCCcEEcCCcEECCCCEEC
Q 015225 234 DILSPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSSLYLALFKIT----SPQLLASGNGITSATIAGDVYIHPSAKVH 306 (411)
Q Consensus 234 d~l~~l~~~~-~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 306 (411)
|+++.+++++ ++++|...++ |.++++|++|+++++.++...... ...+.. +....+.+++.||+++.|+
T Consensus 203 d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~----~~~~~i~~~v~ig~~~~I~ 278 (459)
T PRK14355 203 DIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID----PETTYIDRGVVIGRDTTIY 278 (459)
T ss_pred HHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCceEECCCeEEcCCCEEe
Confidence 8999998776 7999999887 899999999999987665443211 111111 1234688899999999999
Q ss_pred CCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 307 PTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 307 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
++|.|+++++||++|.|+++|+|.+|+||++|+|+.+|++.+++|++++.||+++.+..+ ++|+++++||.
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~---------~~i~~~~~ig~ 349 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG---------TELSAHVKIGN 349 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC---------CEeCCCCEECC
Confidence 999999999999999999999999999999999999999999999999999999999887 77777777776
Q ss_pred CcEEcceEEc
Q 015225 387 EVVVINSIVL 396 (411)
Q Consensus 387 ~~~v~~~~i~ 396 (411)
++.+++++|+
T Consensus 350 ~~~~~~~~ig 359 (459)
T PRK14355 350 FVETKKIVMG 359 (459)
T ss_pred CccccCCEEC
Confidence 6544333333
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=356.86 Aligned_cols=323 Identities=18% Similarity=0.257 Sum_probs=255.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.||||||| +|+||++ .+||+|+|++|+|||+|++++|.++ +++++++++++..+.+.+++... ...+.
T Consensus 4 ~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~~~~~ 73 (482)
T PRK14352 4 PTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAEL----APEVD 73 (482)
T ss_pred CceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhcc----CCccE
Confidence 5789999999 9999997 7899999999999999999999997 89999988887777777777652 22356
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
++.++...|++++++.+++++....+++|++++||.+ ...++..+++.|++.+.+++++..+. .++..|+.+..|
T Consensus 74 ~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~- 150 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRD- 150 (482)
T ss_pred EEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEEC-
Confidence 6667777899999999999885333477999999996 35679999999988877777777766 778889998887
Q ss_pred CCCceeEEeccCCCcc----cCcccceEEEeCHHHHHH-hhhhhhcccccccccccchhhhhhhcccCCCCceeeeccch
Q 015225 161 NTKELLHYTEKPETFV----SDLINCGVYVFTPDFFTA-IQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDI 235 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~----~~~~~~Giyi~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 235 (411)
++++|.++.|||.... ..++++|+|+|++++|.. +.+..+.. ..+.+.+ +|+
T Consensus 151 ~~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~l-~d~ 207 (482)
T PRK14352 151 QDGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDN----------------------AQGELYL-TDV 207 (482)
T ss_pred CCCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccc----------------------cCCcEeH-HHH
Confidence 6789999999986432 456899999999998854 33322110 0122334 899
Q ss_pred hhcccCCC-ceEEEeecceeeecCCccch------hhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCC
Q 015225 236 LSPLAGKK-QLYTYETMDFWEQIKTPGMS------LKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 236 l~~l~~~~-~v~~~~~~~~~~~I~t~~d~------~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
++.+++.+ ++++|..+++|.++++++++ +.+++.+++.+......... +..+.+.++++||+++.|+++
T Consensus 208 i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~----~~~~~i~~~v~ig~~~~I~~~ 283 (482)
T PRK14352 208 LAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD----PATTWIDVDVTIGRDVVIHPG 283 (482)
T ss_pred HHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCeEEEeCCEEECCCcEEeCC
Confidence 99998776 89999999999999998877 44454445444333222222 135678899999999999999
Q ss_pred CEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 309 AKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
|.|.++++||++|.|+++|+|.+|+||++|.|+. +.+.+++|++++.||+++.+..+
T Consensus 284 ~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~ 340 (482)
T PRK14352 284 TQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPG 340 (482)
T ss_pred cEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCC
Confidence 9999999999999999999999999999999874 77778888888888888777655
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=352.79 Aligned_cols=338 Identities=19% Similarity=0.275 Sum_probs=266.5
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++|+||||||| +|+||++ ..||+|+|++|+|||+|++++|.++ ++++|+|++++..+.+++++.. ..+
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~------~~i 73 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQG------SGV 73 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcc------CCc
Confidence 36999999999 9999997 6899999999999999999999997 9999999998877778887753 246
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.++.++...|++++++.+++++.. .+++|++++||.+ .+.+++.+++.|.++++++++++.+. .+++.||.+..|
T Consensus 74 ~~v~~~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~--~~~~~yG~v~~d 150 (481)
T PRK14358 74 AFARQEQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGEL--PDATGYGRIVRG 150 (481)
T ss_pred EEecCCCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCceEEEEC
Confidence 777777778999999999998842 2356999999985 36679999999998888888888877 567789999998
Q ss_pred CCCCceeEEeccCCCcc----cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccch
Q 015225 160 PNTKELLHYTEKPETFV----SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDI 235 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~----~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 235 (411)
++++|..|.|||.... .+++++|+|+|++++++.+....... ..+.+.+ +|+
T Consensus 151 -~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~----------------------~~ge~~l-~d~ 206 (481)
T PRK14358 151 -ADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDN----------------------KAGEYYL-TDL 206 (481)
T ss_pred -CCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCc----------------------cCCeEEH-HHH
Confidence 7789999999876432 35689999999977655554322110 1123445 789
Q ss_pred hhcccCCC-ceEEEeecceeeecCCccchhhcchH-HHhhhhhcCccccccC---CCCCCcEEcCCcEECCCCEECCCCE
Q 015225 236 LSPLAGKK-QLYTYETMDFWEQIKTPGMSLKCSSL-YLALFKITSPQLLASG---NGITSATIAGDVYIHPSAKVHPTAK 310 (411)
Q Consensus 236 l~~l~~~~-~v~~~~~~~~~~~I~t~~d~~~a~~~-~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~v~~~~~ 310 (411)
++.+++++ ++++|...++|..++....++.++.. +++...... ....+ ..+....+.++++||+++.|+++|+
T Consensus 207 i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~ 284 (481)
T PRK14358 207 LGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEA--HMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVL 284 (481)
T ss_pred HHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHhCCCEEecCCeeeccCCcEECCCCEEeCCcE
Confidence 99888776 69999988888888777666555433 443322110 01110 0122344578899999999999999
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVV 389 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ 389 (411)
|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++||+++.||+++.+..+ ++||+++.|+.++.
T Consensus 285 I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~---------~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 285 LRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPG---------TVLGEGVHIGNFVE 354 (481)
T ss_pred EeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCC---------cEECCCCEECCCEE
Confidence 99999999999999999999999999999999999999999999999999999876 67777777776544
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=351.43 Aligned_cols=349 Identities=17% Similarity=0.224 Sum_probs=268.4
Q ss_pred CC-ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 ME-KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~-~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|+ .+.||||||| +|+||+. ..||+|+|++|+|||+|++++|... +++++++++++..+.+.+++.. .
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~------~ 69 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPD------E 69 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccc------c
Confidence 54 4779999999 9999984 8899999999999999999999997 8999998888777777766643 2
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
.+.++.++...|++++++.+++++.....+++++++||+++ ..++..+++.|. +++++++..+. .++..||.+.
T Consensus 70 ~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~--~~~~~~g~v~ 145 (456)
T PRK14356 70 DARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL--PDPGAYGRVV 145 (456)
T ss_pred CceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc--CCCCCceEEE
Confidence 45666667778999999999999864345789999999953 566889888775 55677777777 6778899887
Q ss_pred EcCCCCceeEEeccCCC------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeee
Q 015225 158 ADPNTKELLHYTEKPET------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRL 231 (411)
Q Consensus 158 ~d~~~~~v~~~~e~~~~------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (411)
.+ +++|..+.|+++. +.+.+.++|+|+|++++++.+.+.+... ...+.+.+
T Consensus 146 ~~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~---------------------~~~~e~~l 202 (456)
T PRK14356 146 RR--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNA---------------------NKSGEYYI 202 (456)
T ss_pred Ec--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCc---------------------ccCCcEEH
Confidence 65 7899999998642 3456789999999999886554332111 01122334
Q ss_pred ccchhhcccCCC-ceEEEeecc--eeeecCCccchhhcchHHHhhhhhcCccccccCC---CCCCcEEcCCcEECCCCEE
Q 015225 232 DQDILSPLAGKK-QLYTYETMD--FWEQIKTPGMSLKCSSLYLALFKITSPQLLASGN---GITSATIAGDVYIHPSAKV 305 (411)
Q Consensus 232 ~~d~l~~l~~~~-~v~~~~~~~--~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~v 305 (411)
+++++.+.+.+ ++.++...+ .|.++++|+||.+++..+..+... .++..+. .+...++++++.|++++.|
T Consensus 203 -td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~---~~~~~~~~i~~~~~~~i~~~~~i~~~~~i 278 (456)
T PRK14356 203 -TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE---KHLESGVLIHAPESVRIGPRATIEPGAEI 278 (456)
T ss_pred -HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCCcEEECCCcEECCCCEE
Confidence 78888877554 788888765 579999999999988666544321 1121111 1235677778888888888
Q ss_pred CCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEEC
Q 015225 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE 385 (411)
Q Consensus 306 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~ 385 (411)
..++.|.++++||++|.|+++|.|.+|+||++|+|+++|+|.+++|+++|.||++++|..+ ++||++++|+
T Consensus 279 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~ig~~~~ig 349 (456)
T PRK14356 279 YGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG---------AVLEEGARVG 349 (456)
T ss_pred eCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC---------CEECCCCEec
Confidence 8888888899999999999999999999999999999999999999999999999999866 7777777777
Q ss_pred CCcEEcceEEcCCCEE
Q 015225 386 DEVVVINSIVLPNKVL 401 (411)
Q Consensus 386 ~~~~v~~~~i~~~~~v 401 (411)
.++.+.++++++++.+
T Consensus 350 ~~~~i~~~~i~~~~~i 365 (456)
T PRK14356 350 NFVEMKKAVLGKGAKA 365 (456)
T ss_pred CCceeeeeEecCCcEe
Confidence 7766655555555444
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=337.69 Aligned_cols=364 Identities=19% Similarity=0.311 Sum_probs=280.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhc--ccCCcc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSIS--NELKVP 80 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~--~~~~~~ 80 (411)
+++||+||.. +-+||+|+|...|++|||+.|.|||+|+|++|..+ |+++|+++++.+..++++|++++. ..+...
T Consensus 24 rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 24 RLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhhccccccccce
Confidence 5899999999 99999999999999999999999999999999997 999999999988889999998731 122323
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhc-----CCeeEEEEEecCcccccceeE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRY-----GGMGTMLVIKVSAESAHQFGE 155 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~ 155 (411)
+..+...+....+++++..-+. ....++|++++||++++.+|..++++|+.+ ++.|||+..+.+......--.
T Consensus 101 v~ti~s~~~~S~GDamR~id~k--~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~ 178 (673)
T KOG1461|consen 101 VVTICSGESRSVGDAMRDIDEK--QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVV 178 (673)
T ss_pred EEEEcCCCcCcHHHHHHHHHhc--ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceE
Confidence 4444445566778887665332 112599999999999999999999999654 367888887753112223345
Q ss_pred EEEcCCCCceeEEecc--CC----------------CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhh
Q 015225 156 LIADPNTKELLHYTEK--PE----------------TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEAL 217 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~--~~----------------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (411)
+.+|+.+++++.|.+. .. ....++.+++|-+|||+++..|.+++..+
T Consensus 179 ~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq--------------- 243 (673)
T KOG1461|consen 179 IAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQ--------------- 243 (673)
T ss_pred EEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccce---------------
Confidence 7788889999999851 10 13578999999999999999998765321
Q ss_pred hhcccCCCCceeeeccchhhcccCCCceEEEeecc--eeeecCCccchhhcchHHHhhhhhcC-ccccccCCCCCCcEEc
Q 015225 218 QSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMD--FWEQIKTPGMSLKCSSLYLALFKITS-PQLLASGNGITSATIA 294 (411)
Q Consensus 218 ~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~--~~~~I~t~~d~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 294 (411)
++ -+|...+|-.-+-+.+++++.... |..++.++..|...++++++||.++. |..-..+ ..+...-+
T Consensus 244 ---~r------~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~-~q~~~~~r 313 (673)
T KOG1461|consen 244 ---TR------DDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSG-NQTFSLER 313 (673)
T ss_pred ---eh------hhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCC-Cceeeecc
Confidence 11 012233333333456899988776 89999999999999999999998742 2221111 02223335
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
-++|-++.+.+.++|.++.+++||.++.||.++.|.||+||.||.||.||.|.+|.||++|+||+||+|..
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~--------- 384 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH--------- 384 (673)
T ss_pred cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee---------
Confidence 56778888888888888889999999999999999999999999999999999999999999999999988
Q ss_pred eeEECCCCEECCCcEE-cceEEcCCCEEcCCCC
Q 015225 375 ITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~ 406 (411)
|+|+++++|+.|+.+ +||+++.+.+|+++.+
T Consensus 385 -aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 385 -AIICDDVKIGEGAILKPGSVLGFGVVVGRNFV 416 (673)
T ss_pred -eEeecCcEeCCCcccCCCcEEeeeeEeCCCcc
Confidence 899999999999888 6888888888877654
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=319.20 Aligned_cols=362 Identities=18% Similarity=0.307 Sum_probs=252.8
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~ 79 (411)
|.+++|||+||| .|+||..++...|||||||+|+|||+|.|.+|.++ |+++++|++... .+.++..+.+. +.+
T Consensus 7 ~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~---~~l 80 (433)
T KOG1462|consen 7 MSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSN---IDL 80 (433)
T ss_pred hHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcC---Ccc
Confidence 678999999999 99999999999999999999999999999999997 999999998863 45666777553 222
Q ss_pred c-----eEEee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecC-------
Q 015225 80 P-----VRYLK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVS------- 146 (411)
Q Consensus 80 ~-----i~~v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~------- 146 (411)
+ +++-. .....||+++|+..-..+. .++||+++||.+++.++..++++++..++...++....-
T Consensus 81 ~~~~~~v~ip~~~~~d~gtadsLr~Iy~kik---S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pg 157 (433)
T KOG1462|consen 81 KKRPDYVEIPTDDNSDFGTADSLRYIYSKIK---SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPG 157 (433)
T ss_pred cccccEEEeecccccccCCHHHHhhhhhhhc---cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccC
Confidence 2 22221 1235699999999999887 579999999999999999999999977765444444321
Q ss_pred -c-ccccceeEEEEcCCCCceeEEecc-----------------CC-CcccCcccceEEEeCHHHHHHhhhhhhcccccc
Q 015225 147 -A-ESAHQFGELIADPNTKELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRA 206 (411)
Q Consensus 147 -~-~~~~~~g~v~~d~~~~~v~~~~e~-----------------~~-~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~ 206 (411)
+ +..+.+..+..+.++.|+...... |. +..+++.++++|+|+.++++.|.+...-.+-+.
T Consensus 158 qk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~ 237 (433)
T KOG1462|consen 158 QKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKA 237 (433)
T ss_pred cccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecc
Confidence 1 122334455566456676655432 11 235889999999999999999986543333233
Q ss_pred cccccchhhhhhhcccCCCCceeeec--cchhhccc-----CCCceEEEeec--ceeeecCCccchhhcch--HHHhhhh
Q 015225 207 NIRQVSSFEALQSATRTLPVDFVRLD--QDILSPLA-----GKKQLYTYETM--DFWEQIKTPGMSLKCSS--LYLALFK 275 (411)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~d~l~~l~-----~~~~v~~~~~~--~~~~~I~t~~d~~~a~~--~~l~~~~ 275 (411)
...+|-.-+|++-+.- ......++. ..+.+... .+-++++|... ..+.+++|+..|+++|+ .+.+...
T Consensus 238 ~f~P~lvkkQ~q~~~~-~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~ 316 (433)
T KOG1462|consen 238 DFLPYLVKKQFQKNPP-LKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCS 316 (433)
T ss_pred cccchhhhhhhhcCCC-cccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhcc
Confidence 3333322223321000 000000000 01111111 12356655443 46778999999999995 2222111
Q ss_pred hcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCC
Q 015225 276 ITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKS 355 (411)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~ 355 (411)
+. .+ + .+. +...+.++..+++|++|.|++++.|+.|+||++|.||+.|+|.+|+|++++
T Consensus 317 e~--~~-----------------~-k~~-~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV 375 (433)
T KOG1462|consen 317 EA--KF-----------------V-KNY-VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNV 375 (433)
T ss_pred cc--cc-----------------c-cch-hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCc
Confidence 10 00 0 110 011145556788899999999999999999999999999999999999999
Q ss_pred EECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 356 SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 356 ~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
+||++|+|.+ |+||++|+||+|+.+.+|.||+|.+|+.
T Consensus 376 ~vg~G~~Ien----------sIIg~gA~Ig~gs~L~nC~Ig~~yvVea 413 (433)
T KOG1462|consen 376 VVGDGVNIEN----------SIIGMGAQIGSGSKLKNCIIGPGYVVEA 413 (433)
T ss_pred EecCCcceec----------ceecccceecCCCeeeeeEecCCcEEcc
Confidence 9999999998 9999999999999999999999999984
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=342.26 Aligned_cols=343 Identities=21% Similarity=0.304 Sum_probs=263.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| +|+||++ ..||+|+|++|+|||+|++++|.++ +++++++++++..+.+.+++.+ + .+.+
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~----~--~i~~ 68 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALAN----R--DVNW 68 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcC----C--CcEE
Confidence 789999999 9999997 7899999999999999999999997 9999998888887778887765 2 3455
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. .++|++++||.+ .+.++..+++.|.+. .+++++.+. +++..|+.+..| +
T Consensus 69 ~~~~~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d-~ 141 (451)
T TIGR01173 69 VLQAEQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIRE-N 141 (451)
T ss_pred EEcCCCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEc-C
Confidence 5555567999999999998852 368999999995 356789999888654 356666666 566779988888 6
Q ss_pred CCceeEEeccCCCc----ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPETF----VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
+++|..+.|+|... ...+.++|+|+|++++| +.+.+..+.. ..+.+.+ .+++
T Consensus 142 ~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~~~~ 198 (451)
T TIGR01173 142 DGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNN----------------------AQGEYYL-TDVI 198 (451)
T ss_pred CCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhccccc----------------------ccCcEeH-HHHH
Confidence 78999999986432 23467899999999874 5454321110 0122334 6888
Q ss_pred hcccCCC-ceEEEeecce--eeecCCccchhhcchHHHhhhhhc--CccccccCCCCCCcEEcCCcEECCCCEECCCCEE
Q 015225 237 SPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSSLYLALFKIT--SPQLLASGNGITSATIAGDVYIHPSAKVHPTAKI 311 (411)
Q Consensus 237 ~~l~~~~-~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i 311 (411)
+.+++++ +++.|...++ |.++++|+++..++..+..+.... .+.... ..+....+.+++.||+++.|+++|+|
T Consensus 199 ~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~ig~~~~i~~~~~i 276 (451)
T TIGR01173 199 ALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL--RDPARFDIRGTVEIGRDVEIDPNVIL 276 (451)
T ss_pred HHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--ecCCeEEECCccEECCCCEEcCCeEE
Confidence 8888775 7999998887 899999999988876554432211 011000 11235677889999999999999999
Q ss_pred CCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 312 GPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 312 ~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
.++++||++|.|+++|.|.+++|+++|.|+++|.|.+++|+++|.||++++|..+ ++|+++++|+.++.+.
T Consensus 277 ~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~Ig~~~~i~ 347 (451)
T TIGR01173 277 EGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPG---------SVLGAGVHIGNFVETK 347 (451)
T ss_pred eCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCC---------CEECCCcEEccceeec
Confidence 9999999999999999999999999999999999999999999999999999876 6777777666665554
Q ss_pred ceEEcCCC
Q 015225 392 NSIVLPNK 399 (411)
Q Consensus 392 ~~~i~~~~ 399 (411)
++.|+.++
T Consensus 348 ~~~ig~~~ 355 (451)
T TIGR01173 348 NARIGKGS 355 (451)
T ss_pred CcEECCCc
Confidence 44444433
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=336.44 Aligned_cols=370 Identities=18% Similarity=0.211 Sum_probs=252.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.||||||| .|+||++ ..||+|+|++|+|||+|++++|..+ ++++++|++++..+.+.+++.+ ++.+
T Consensus 3 ~~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~----~~~~ 72 (446)
T PRK14353 3 DRTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAK----IAPD 72 (446)
T ss_pred cccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhc----cCCC
Confidence 778999999999 9999986 6899999999999999999999997 8999999988887778777754 2223
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.+....|++++++.+++++.. ..++|++++||.++ ...+..+++.+ +.+++++++..+. .++..|+.+..
T Consensus 73 ~~~~~~~~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~--~~~~~~g~~~~ 148 (446)
T PRK14353 73 AEIFVQKERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRA--ADPTGYGRLIV 148 (446)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEe--CCCCcceEEEE
Confidence 4455556678999999999998842 24789999999953 45577887744 4566777777776 66678888776
Q ss_pred cCCCCceeEEeccCCCc----ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 159 DPNTKELLHYTEKPETF----VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
+ +++|..+.|||... .+.+.++|+|+|+++.| +.+++..... ..+.+.+ +
T Consensus 149 ~--~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~ 203 (446)
T PRK14353 149 K--GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDN----------------------AKGEYYL-T 203 (446)
T ss_pred C--CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccC----------------------CCCcEeH-H
Confidence 5 67999999987431 23578899999998654 5554321100 0122334 6
Q ss_pred chhhcccCCC-ceEEEeec-ceeeecCCccchhhcchHHHhhhhh----cCccccccC--------CCCCCcEEcCCcEE
Q 015225 234 DILSPLAGKK-QLYTYETM-DFWEQIKTPGMSLKCSSLYLALFKI----TSPQLLASG--------NGITSATIAGDVYI 299 (411)
Q Consensus 234 d~l~~l~~~~-~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~i 299 (411)
+.++.+++.+ +++.+..+ ++|.+|++|+||..++..+.++... ....+.... ....++.+.++++|
T Consensus 204 d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I 283 (446)
T PRK14353 204 DIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVF 283 (446)
T ss_pred HHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEE
Confidence 8888887665 69999886 4799999999999998766544210 001111110 01134445555555
Q ss_pred CCCCEECCCCEECC-----CcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCE-----------ECCCcE
Q 015225 300 HPSAKVHPTAKIGP-----NVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSS-----------LGRWAR 362 (411)
Q Consensus 300 ~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~-----------ig~~~~ 362 (411)
++++.|+++|.|++ +++||++|+||++|.|. +|+||++|.||++|.+.+++|++++. ||++|.
T Consensus 284 ~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ 363 (446)
T PRK14353 284 GPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGAN 363 (446)
T ss_pred CCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcE
Confidence 55555555555554 46677777777777776 67777777777777666555555432 333333
Q ss_pred EecCCcC-C---cccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 363 VQGNGDY-N---AKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 363 i~~~~~~-~---~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
|+.+... + .....++||++++||.++.| .+++|++|++|..++|+..
T Consensus 364 Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~ 421 (446)
T PRK14353 364 IGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDA 421 (446)
T ss_pred ECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCC
Confidence 3332110 0 00012677778777777766 5788899999999888754
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=338.48 Aligned_cols=315 Identities=20% Similarity=0.301 Sum_probs=228.2
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|+||||||| .|+||++ ..||+|+|++|+|||+|+++.|..+ +++++++++++..+.+++++... +
T Consensus 3 ~~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~------~ 70 (456)
T PRK09451 3 NSAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADE------P 70 (456)
T ss_pred CCCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccC------C
Confidence 568999999999 9999985 7899999999999999999999997 89999999887777777777541 4
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.+....|++++++.+++++. .+++|++++||.+ .+.++..+++.|.+.+ +++++.+. +++..||++..
T Consensus 71 ~~~i~~~~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~ 144 (456)
T PRK09451 71 LNWVLQAEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITR 144 (456)
T ss_pred cEEEECCCCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEe
Confidence 566667777899999999999874 2478999999995 4677889888875443 34555555 67778998754
Q ss_pred cCCCCceeEEeccCCCc----ccCcccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 159 DPNTKELLHYTEKPETF----VSDLINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
+ +++|.++.|||... .+++.++|+|+|+++.|. .+.+..... ..+.+.+ +
T Consensus 145 ~--~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~----------------------~~~e~~l-~ 199 (456)
T PRK09451 145 E--NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNN----------------------AQGEYYI-T 199 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCcc----------------------ccCceeH-H
Confidence 4 77999999998532 246889999999998774 444322110 0122334 7
Q ss_pred chhhcccCCC-ceEEEe------ecce--eeecCCccchhhcchH--HHhhhhhcCccccccCCCCCCcEEcCCcEECCC
Q 015225 234 DILSPLAGKK-QLYTYE------TMDF--WEQIKTPGMSLKCSSL--YLALFKITSPQLLASGNGITSATIAGDVYIHPS 302 (411)
Q Consensus 234 d~l~~l~~~~-~v~~~~------~~~~--~~~I~t~~d~~~a~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 302 (411)
|+++.+++++ ++++|. ..|+ |.+++++++|++++.. ++..... +.. +....+.+++.+|++
T Consensus 200 d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~----~~~----p~~~~~~~~~~ig~~ 271 (456)
T PRK09451 200 DIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVM----LRD----PARFDLRGTLTHGRD 271 (456)
T ss_pred HHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCE----EeC----CCEEEECCcEEECCC
Confidence 9999998775 888885 3565 6779999999988742 2221100 000 011223445666777
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+.|+++|.|.++++||++|.|+++|.|.+|+|+++|.|+++|.|.+|+|++++.|++++.|..+
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~ 335 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPG 335 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCC
Confidence 7777777777677777777777777777777777777777777777777777777777666654
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=301.50 Aligned_cols=236 Identities=23% Similarity=0.393 Sum_probs=213.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEeccc-chHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY-EEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|+||||||| .||||+|+|...||.|+|+.+||||+|.|+.|..+ ||++|.||+.. +...+++++.++ ++|+++++
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdg-s~~gv~it 76 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDG-SDFGVDIT 76 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCc-cccCcceE
Confidence 789999999 99999999999999999999999999999999998 99999987765 667888888885 67999999
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
|..|.++.|.++|+..+++++. +++|+++.||.++..++.++++.+.+.+.++++++.++ .+|++||++..| ++
T Consensus 77 Y~~Q~~p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d-~~ 150 (286)
T COG1209 77 YAVQPEPDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFD-ED 150 (286)
T ss_pred EEecCCCCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEc-CC
Confidence 9999999999999999999997 69999999999986699999999998899999999999 899999999999 77
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 242 (411)
++++++.|||..+.|+++-+|+|+|++++|+.++...++. .+.+.+ +|+++.++++
T Consensus 151 ~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~-----------------------RGElEI-Td~i~~~i~~ 206 (286)
T COG1209 151 GKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSA-----------------------RGELEI-TDAIDLYIEK 206 (286)
T ss_pred CcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCC-----------------------CCceEe-hHHHHHHHHc
Confidence 8999999999999999999999999999999988754432 245556 9999999988
Q ss_pred C-ceEEEeecceeeecCCccchhhcchHHHhh
Q 015225 243 K-QLYTYETMDFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 243 ~-~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
| .+......|.|.|.+|++++++|++..+..
T Consensus 207 G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 207 GYLVVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred CcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 7 566667778999999999999999877763
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=333.28 Aligned_cols=346 Identities=20% Similarity=0.335 Sum_probs=264.5
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|+++||||||| .|+||++ .+||+|+|++|+|||+|++++|.++ ++++++++++++.+.+++++.+ .+
T Consensus 1 m~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-------~~ 67 (458)
T PRK14354 1 MNRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-------RS 67 (458)
T ss_pred CCceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-------Cc
Confidence 45899999999 9999985 7999999999999999999999997 8999998888887777777654 13
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.++.+....|++++++.+++++.. .++++++++||.+ .+.++..+++.|.+.++++++++... +++..|+.+..|
T Consensus 68 ~~~~~~~~~g~~~al~~a~~~l~~-~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d 144 (458)
T PRK14354 68 EFALQEEQLGTGHAVMQAEEFLAD-KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRN 144 (458)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcc-cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEc
Confidence 455566678999999999998852 1367999999985 36678999999987778888877766 566778888887
Q ss_pred CCCCceeEEeccCCC----cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 160 PNTKELLHYTEKPET----FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
++++|..+.|+|.. ....+.++|+|+|+++ +++.+.+..... ..+.+.+ ++
T Consensus 145 -~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d 200 (458)
T PRK14354 145 -ENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDN----------------------AQGEYYL-TD 200 (458)
T ss_pred -CCCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccc----------------------cCCcEeH-HH
Confidence 67899999987632 2246789999999996 556665432110 0122233 67
Q ss_pred hhhcccCCC-ceEEEeeccee--eecCCccchhhcchHHHhhhhhc--Cc--cccccCCCCCCcEEcCCcEECCCCEECC
Q 015225 235 ILSPLAGKK-QLYTYETMDFW--EQIKTPGMSLKCSSLYLALFKIT--SP--QLLASGNGITSATIAGDVYIHPSAKVHP 307 (411)
Q Consensus 235 ~l~~l~~~~-~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 307 (411)
.++.+++.+ ++++|..+++| .++++++|+..++..+.++.... .+ .+.. +..+.+.+++.||+++.|++
T Consensus 201 ~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~----~~~~~i~~~~~ig~~~~i~~ 276 (458)
T PRK14354 201 VIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID----PESTYIDADVEIGSDTVIEP 276 (458)
T ss_pred HHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC----CCeEEECCCcEECCCCEEeC
Confidence 888777654 79999988764 56679999988876554433211 11 1111 22457888889999999999
Q ss_pred CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCC
Q 015225 308 TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDE 387 (411)
Q Consensus 308 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 387 (411)
++.|.+++.||++|.|+++|.|.+|+|+++|+|+ ++.+.+++||++|.||+++.|..+ ++||++++|+.+
T Consensus 277 ~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~ 346 (458)
T PRK14354 277 GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEVKIGNF 346 (458)
T ss_pred CeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCC---------CEEeCCcEECCc
Confidence 9999999999999999999999999999999998 567788999999999998888865 777777777777
Q ss_pred cEEcceEEcCCCEE
Q 015225 388 VVVINSIVLPNKVL 401 (411)
Q Consensus 388 ~~v~~~~i~~~~~v 401 (411)
+.+.+++|++++.+
T Consensus 347 ~~i~~~~i~~~~~i 360 (458)
T PRK14354 347 VEIKKSTIGEGTKV 360 (458)
T ss_pred eEEeeeEECCCCEe
Confidence 66655555554443
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=326.48 Aligned_cols=360 Identities=16% Similarity=0.206 Sum_probs=238.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+++||||||| .|+||++ .+||+|+|++|+|||+|+++.|.++ ++++.|++++..+.+++++.+. + ..+.
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~---~-~~v~ 70 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEY---F-PGVI 70 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhc---C-CceE
Confidence 4899999999 9999997 8999999999999999999999985 6888888888888888888652 1 1355
Q ss_pred EeeCC--CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKED--KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~--~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
++.+. ...|++++++.+.. ..++|++++||.++. ..+.++.+.+.++++++.+.+. +++..|+.+..|
T Consensus 71 ~~~~~~~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~--~~~~~~g~v~~d- 140 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL--ADPKGYGRVVIE- 140 (430)
T ss_pred EEEecCccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc--CCCccCcEEEEc-
Confidence 55443 34689999876321 158899999999642 2345555656667777777776 667778987766
Q ss_pred CCCceeEEeccCCCc----ccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 161 NTKELLHYTEKPETF----VSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
++++..+.|++... ...+.++|+|+|++++|+.+.+...... ....+.+ +|++
T Consensus 141 -~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~---------------------~~~e~~l-~d~i 197 (430)
T PRK14359 141 -NGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQN---------------------AQKEYYL-TDII 197 (430)
T ss_pred -CCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCccc---------------------ccCceeh-hhHH
Confidence 67999999876421 2467899999999999886644321100 0122334 7888
Q ss_pred hcccCC-CceEEEeec-ceeeecCCccchhhcchHHHhhhhhcC--cc--ccccC--CCCCCcEEcCCcEECCCCEECCC
Q 015225 237 SPLAGK-KQLYTYETM-DFWEQIKTPGMSLKCSSLYLALFKITS--PQ--LLASG--NGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 237 ~~l~~~-~~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~~~~~~~--~~--~~~~~--~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
+.+++. .++..+..+ ++|.+|++|+||+.++..+..+..... .. ..... ..+.++.+.+++++|+++.|+++
T Consensus 198 ~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~ 277 (430)
T PRK14359 198 ALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGK 277 (430)
T ss_pred HHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCC
Confidence 888766 579998887 589999999999999866554432110 00 00000 01245566666666666666655
Q ss_pred CEECCCcEECCCcEE----------------CCCcEEEeeEECCCC----------EECCCcEEEeeEECCCCEECCCcE
Q 015225 309 AKIGPNVSISANVRV----------------GAGVRLISCIVLDDV----------EIKENAVVLNSIIGWKSSLGRWAR 362 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i----------------~~~~~i~~~~i~~~~----------~i~~~~~i~~s~i~~~~~ig~~~~ 362 (411)
|.|+ +++||++|.| +++|.|.+|+||++| +||+++.|.+|+||++|.||.++.
T Consensus 278 ~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~ 356 (430)
T PRK14359 278 SKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTI 356 (430)
T ss_pred eEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCce
Confidence 5554 4444444444 444444444444444 444444555556666666666655
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+.++.... ...+.||++++||.++.| .+++|++|++|.+++|+..
T Consensus 357 ~~~~~~~~--~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~ 408 (430)
T PRK14359 357 TCNYDGKK--KHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGS 408 (430)
T ss_pred EccccCcc--CcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCc
Confidence 54321100 001566777777766655 5799999999999998754
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=324.49 Aligned_cols=326 Identities=23% Similarity=0.330 Sum_probs=244.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| .|+||++ .+||+|+|++|+|||+|+|++|.+. + ++|+|++++..+.+.+++.. .+.+
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~-~-~~i~vv~~~~~~~i~~~~~~-------~~~~ 66 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKV-A-QKVGVVLGHEAELVKKLLPE-------WVKI 66 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhc-C-CcEEEEeCCCHHHHHHhccc-------ccEE
Confidence 789999999 9999986 7899999999999999999999995 4 88998888777777777653 2455
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. +++|++++||.+ .+.++.++++.|+++++++++++++. +++..||.+..|
T Consensus 67 ~~~~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~v~~d-- 140 (448)
T PRK14357 67 FLQEEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL--EDPTGYGRIIRD-- 140 (448)
T ss_pred EecCCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCcEEEEEc--
Confidence 6667778999999999998842 478999999984 46778999999988889999998887 677889998776
Q ss_pred CCceeEEeccCCCc----ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPETF----VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
++++ .+.|++..+ ...+.++|+|+|++++| +.+.+..... ..+.+.+ .|++
T Consensus 141 ~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~----------------------~~~~~~~-~d~i 196 (448)
T PRK14357 141 GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNEN----------------------AKGEYYL-TDAV 196 (448)
T ss_pred CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCC----------------------CCCeEEH-HHHH
Confidence 5677 777765322 13578999999999975 4454421100 0122334 5777
Q ss_pred hcccCCCceEEEeecce--eeecCCccchhhcchHHHhhhh----hcCccccccCCCCCCcEEcCCcEECCCCEECCCCE
Q 015225 237 SPLAGKKQLYTYETMDF--WEQIKTPGMSLKCSSLYLALFK----ITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAK 310 (411)
Q Consensus 237 ~~l~~~~~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~ 310 (411)
+.+ .++..|...++ |..+++++++..+...+.+... .....+... ..+.+++++.||+++.|++++.
T Consensus 197 ~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~Ig~~~~i~~~~~ 269 (448)
T PRK14357 197 NFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDP----NTTYIHYDVEIGMDTIIYPMTF 269 (448)
T ss_pred Hhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCC----CcEEEccceEECCCcEEcCCcE
Confidence 666 24788888888 5556799888877665543321 111121111 2457788888999999999999
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|++++.||++|+|+++|+|.+|+|+++|+|. .+.+.+|+|++++.||+++++..+ ++||++++|+.++.+
T Consensus 270 I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~---------~~ig~~~~Ig~~~~i 339 (448)
T PRK14357 270 IEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREG---------TVLKKSVKIGNFVEI 339 (448)
T ss_pred EEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCc---------ccccCCcEecCceee
Confidence 9888999999999999999999999999885 467778888888888888877665 566666655555444
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=316.50 Aligned_cols=344 Identities=19% Similarity=0.337 Sum_probs=259.8
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.+|||||| .|+||++ .+||+|+|++|+|||+|+|++|.++ ++++++|++.+..+.+.+++.+. + .+.+
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~-~i~~ 70 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHL----P-GLEF 70 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhccc----C-CeEE
Confidence 789999999 9999986 7899999999999999999999997 89999988887777777777542 1 4566
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. .++++++++||.+ .+.++..+++.|++.+++++++..+. .++..||.+..| +
T Consensus 71 v~~~~~~G~~~sv~~~~~~l~~-~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~ 146 (450)
T PRK14360 71 VEQQPQLGTGHAVQQLLPVLKG-FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCD-G 146 (450)
T ss_pred EEeCCcCCcHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEEC-C
Confidence 6666678999999999998852 2367999999995 46679999999988888877777665 677779998888 6
Q ss_pred CCceeEEeccCC----CcccCcccceEEEeCHHHHHHhh-hhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPE----TFVSDLINCGVYVFTPDFFTAIQ-GVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~----~~~~~~~~~Giyi~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
+++|.++.|+|. ...+.+.++|+|+|+++.|..+. +..+.. ....+.+ +|.+
T Consensus 147 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~~-td~i 203 (450)
T PRK14360 147 NNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNN----------------------DQKEYYL-TDTV 203 (450)
T ss_pred CCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccc----------------------cCCceeH-HHHH
Confidence 889999999874 23467899999999997765443 321110 0012223 6666
Q ss_pred hcccCCCceEEEeeccee--eecCCccchhhcchHHHhhhh----hcCccccccCCCCCCcEEcCCcEECCCCEECCCCE
Q 015225 237 SPLAGKKQLYTYETMDFW--EQIKTPGMSLKCSSLYLALFK----ITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAK 310 (411)
Q Consensus 237 ~~l~~~~~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~ 310 (411)
+.+. .+..+...++| ..+++++++..+...+..... .....++.. ....+.+++++++++.|++++.
T Consensus 204 ~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~----~~~~i~~~~~ig~~~~i~~~~~ 276 (450)
T PRK14360 204 SLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDP----ASCTISETVELGPDVIIEPQTH 276 (450)
T ss_pred HHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecC----CeEEEeCCEEECCCCEECCCCE
Confidence 6663 24555556554 458999999888766543322 111121211 1245778889999999999999
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.++++||++|.|++++.|.+|+|+++|+|+ ++.+.+|+|++++.|+.++.|.++ ++||++++|+.++.+
T Consensus 277 i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~---------~~Ig~~~~Ig~~~~i 346 (450)
T PRK14360 277 LRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPE---------AQIGSNCRIGNFVEI 346 (450)
T ss_pred EeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCC---------CEEeCceEECCCEEE
Confidence 9999999999999999999999999999995 567788888888888888888766 777777777777766
Q ss_pred cceEEcCCCEEc
Q 015225 391 INSIVLPNKVLN 402 (411)
Q Consensus 391 ~~~~i~~~~~v~ 402 (411)
.+++++.++.+.
T Consensus 347 ~~~~i~~~~~i~ 358 (450)
T PRK14360 347 KKSQLGEGSKVN 358 (450)
T ss_pred eccccCCCcEec
Confidence 555555555443
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=297.09 Aligned_cols=239 Identities=17% Similarity=0.270 Sum_probs=199.0
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc-----
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN----- 75 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~----- 75 (411)
|.+|+||||||| .||||+|+|..+||+|+||+|+|+|+|+++++..+ |+++|+|++++..+.+.+|+...+.
T Consensus 1 ~~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~ 77 (297)
T TIGR01105 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHH
Confidence 889999999999 99999999999999999999999999999999997 9999999999998899999865211
Q ss_pred ----------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--------CChHHHHHHH
Q 015225 76 ----------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--------FPLPDLLEAH 131 (411)
Q Consensus 76 ----------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~ 131 (411)
+++.++.++.|+++.||+++++.+++++. +++|+++.||.+++ .++..++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~---~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~ 154 (297)
T TIGR01105 78 EQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG---DNPFVVVLPDIIIDDATADPLRYNLAAMIARF 154 (297)
T ss_pred HHhcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC---CCCEEEEECCeeccccccccchhHHHHHHHHH
Confidence 24567889999999999999999999995 47899999999875 4889999999
Q ss_pred HhcCCeeEEEEEecCcccccceeEEEEcC---CCCc---eeEEeccCCCc---ccCcccceEEEeCHHHHHHhhhhhhcc
Q 015225 132 KRYGGMGTMLVIKVSAESAHQFGELIADP---NTKE---LLHYTEKPETF---VSDLINCGVYVFTPDFFTAIQGVLTHR 202 (411)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~v~~d~---~~~~---v~~~~e~~~~~---~~~~~~~Giyi~~~~~~~~l~~~~~~~ 202 (411)
.++++.++++. ..+ ++++.||++..|. ++++ |.++.|||..+ .++++++|+|+|++++|+.+.+....
T Consensus 155 ~~~~~~~~~~~-~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~- 231 (297)
T TIGR01105 155 NETGRSQVLAK-RMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPG- 231 (297)
T ss_pred HHhCCcEEEEE-EcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCC-
Confidence 87776654443 332 4688999998841 3454 58888998644 47899999999999999988653211
Q ss_pred cccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHH
Q 015225 203 EDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
..+.+.+ +|+++.++++++++++..+|+|.|+|+|++|++++..+.
T Consensus 232 ----------------------~~ge~~l-td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 232 ----------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred ----------------------CCCeeeH-HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1133445 799999999899999999999999999999999987763
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=284.39 Aligned_cols=256 Identities=53% Similarity=0.998 Sum_probs=206.7
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
|||||||..+|+||+|+|..+||+|+|++|+|||+|+|++|..+.|+++|+|++++..+.+.+|+++..+.++..+.++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 68999981129999999999999999999999999999999982299999999998888999999875445667777777
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++++.+..+++|+|++||++++.+++.++++|+++++++|+++.+.+.+++..||++..|.++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 77788999999999999854335789999999999999999999999999999988887644567889998887346899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCce
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 245 (411)
..+.|||....+.++++|+|+|++++|+.+.+....... ++.+ .....++-..+.+++..|+++.+++++++
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~-----e~~~---~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 232 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQ-----EAQL---GDDNNREGRAEVIRLEQDVLTPLAGSGKL 232 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhcccccc-----cccc---ccccccccccceeeehhhhhhHHhccCCE
Confidence 999999987778899999999999999888754322110 0000 00000000124455668999999988999
Q ss_pred EEEeecceeeecCCccchhhcchH
Q 015225 246 YTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 246 ~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
++|..+|||.||+++++|+++++.
T Consensus 233 ~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 233 YVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred EEecCCCeeecCCCHHHHHhHhhc
Confidence 999999999999999999999874
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=280.61 Aligned_cols=233 Identities=36% Similarity=0.684 Sum_probs=201.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|++|||||| .|+||+|+|...||+|+|++|+|||+|+++++..+ ++++|+|++++..+.+++++.+..+..+..+.+
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~ 77 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITF 77 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEe
Confidence 689999999 99999999999999999999999999999999997 999999999988888899988643345666666
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
..+....|++++++.+++++... +++|++++||++++.++..+++.|+++++++++++.+. .++..||++..|.+++
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~~~~ 154 (233)
T cd06425 78 SIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKV--EDPSKYGVVVHDENTG 154 (233)
T ss_pred ccCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEc--CCccccCeEEEcCCCC
Confidence 65667789999999999998521 36799999999999999999999999999999998887 5667899999883278
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 243 (411)
+|..+.|||..+.++++++|+|+|++++|+.+.+. ..++..++++.+++++
T Consensus 155 ~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~~~~~~~~l~~~~ 205 (233)
T cd06425 155 RIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLR-----------------------------PTSIEKEIFPKMASEG 205 (233)
T ss_pred EEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccC-----------------------------cccchhhhHHHHHhcC
Confidence 99999999877668899999999999999877542 1123367889898889
Q ss_pred ceEEEeecceeeecCCccchhhcchHHH
Q 015225 244 QLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 244 ~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
++.+|..+++|.||++|++|++|++.+|
T Consensus 206 ~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 206 QLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred CEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 9999999999999999999999987664
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=285.73 Aligned_cols=238 Identities=20% Similarity=0.309 Sum_probs=204.6
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~ 79 (411)
|+.|+||||||| .|+||+|+|..+||+|+||+|+|||+|+|++|..+ |+++|+|++ ++..+.++++++++ +.|+.
T Consensus 1 m~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g-~~~g~ 76 (292)
T PRK15480 1 MKTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDG-SQWGL 76 (292)
T ss_pred CCceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCc-cccCc
Confidence 899999999999 99999999999999999999999999999999997 999998765 45567788998874 46888
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
++.++.++...|+++++..+.+++. +++++++.||.++ +.++..+++.|.+.+.++++++.++ .+++.||++..
T Consensus 77 ~i~y~~q~~~~Gta~Al~~a~~~i~---~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~ 151 (292)
T PRK15480 77 NLQYKVQPSPDGLAQAFIIGEEFIG---GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEF 151 (292)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhC---CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEE
Confidence 9999999888999999999999985 3568888999774 8899999999988888889888887 78889999999
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
| ++++|+++.|||..+.++++++|+|+|++++++.+++..+. ..+.+.+ +|+++.
T Consensus 152 d-~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~-----------------------~~ge~~i-td~~~~ 206 (292)
T PRK15480 152 D-QNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPS-----------------------ARGELEI-TDINRI 206 (292)
T ss_pred C-CCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCC-----------------------CCCeeEh-HHHHHH
Confidence 9 78899999999988889999999999999999988654221 1234556 799998
Q ss_pred ccCCCceEE-Eeecc-eeeecCCccchhhcchHHHh
Q 015225 239 LAGKKQLYT-YETMD-FWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 239 l~~~~~v~~-~~~~~-~~~~I~t~~d~~~a~~~~l~ 272 (411)
+++++++.. +...+ .|.|++|+++|.+|++.+..
T Consensus 207 ~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~~ 242 (292)
T PRK15480 207 YMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIAT 242 (292)
T ss_pred HHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHHH
Confidence 888887643 45567 59999999999999987753
|
|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=285.34 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=199.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc-----
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN----- 75 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~----- 75 (411)
|.+|+||||||| +|+||+|+|..+||+|+||+|+|+|+|+++++..+ |+++|+|++++..+.+.+|+...+.
T Consensus 1 ~~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~ 77 (297)
T PRK10122 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHH
Confidence 899999999999 99999999999999999999999999999999997 9999999999988899999864210
Q ss_pred ----------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--------CChHHHHHHH
Q 015225 76 ----------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--------FPLPDLLEAH 131 (411)
Q Consensus 76 ----------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~ 131 (411)
.++.++.++.|.+..|++++++.+++++. +++|+++.||.+++ .++..+++.|
T Consensus 78 ~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h 154 (297)
T PRK10122 78 EQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAMIARF 154 (297)
T ss_pred hhcchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHHHHHH
Confidence 13457788888889999999999999985 47899999999875 4799999999
Q ss_pred HhcCCeeEEEEEecCcccccceeEEEEcC---CCC---ceeEEeccCCCc---ccCcccceEEEeCHHHHHHhhhhhhcc
Q 015225 132 KRYGGMGTMLVIKVSAESAHQFGELIADP---NTK---ELLHYTEKPETF---VSDLINCGVYVFTPDFFTAIQGVLTHR 202 (411)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~v~~d~---~~~---~v~~~~e~~~~~---~~~~~~~Giyi~~~~~~~~l~~~~~~~ 202 (411)
.+.+++++++.... +++..||++..|. +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+..+.
T Consensus 155 ~~~~~~~~~~~~~~--~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~- 231 (297)
T PRK10122 155 NETGRSQVLAKRMP--GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPG- 231 (297)
T ss_pred HHhCCcEEEEEECC--CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCC-
Confidence 88877654444333 4778999998851 244 688999998644 37899999999999999988652210
Q ss_pred cccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHH
Q 015225 203 EDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
..+.+.+ +|+++.+++++++.+|..+|+|.|+++|++|++++..+
T Consensus 232 ----------------------~~~e~~l-td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 232 ----------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred ----------------------CCCeeeH-HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 1133445 79999999989999999999999999999999999887
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=277.58 Aligned_cols=238 Identities=30% Similarity=0.531 Sum_probs=198.9
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEE-EEecccchHHHHHHHhhhcccCCcceE
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQI-FLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I-~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+||||||| +|+||+|+|..+||+|+|++|+ |||+|+|++|..+ |++++ +|+++++.+.+.+++++. ..++.++.
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIE 76 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeeccccccccccccc-ccccccce
Confidence 69999999 9999999999999999999999 9999999999997 99995 555557788899999985 44677889
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccC-CCeEEEEcCCcccCCChHHHHHHHHhcCCe--eEEEEEecCcccccceeEEEEc
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEEN-PSHIILLNCDVCCSFPLPDLLEAHKRYGGM--GTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~g~v~~d 159 (411)
++.+....|++++++.+++++.... +++|++++||++++.++.++++.|.+++++ +++...+. ++++.||++..|
T Consensus 77 ~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d 154 (248)
T PF00483_consen 77 YIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV--EDPSRYGVVEVD 154 (248)
T ss_dssp EEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES--SGGGGSEEEEEE
T ss_pred eeecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccc--cccccceeeeec
Confidence 9988888999999999999997322 245999999999999999999999998884 45555555 788999999999
Q ss_pred CCCCceeEEeccCCCcc-cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 160 PNTKELLHYTEKPETFV-SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~-~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
++++|..+.|||.... +.++++|+|+|++++|+.+.+..... +.+...+ .|+++.
T Consensus 155 -~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~----------------------~~~~~~l-~d~i~~ 210 (248)
T PF00483_consen 155 -EDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKEN----------------------ARGEDFL-TDAIPK 210 (248)
T ss_dssp -TTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTC----------------------TTSSHHH-HHHHHH
T ss_pred -cceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhcc----------------------chhhhHH-HHHHHH
Confidence 7899999999998776 88999999999999999885422111 1112223 788999
Q ss_pred ccCCC-ceEEEeecc--eeeecCCccchhhcchHHHh
Q 015225 239 LAGKK-QLYTYETMD--FWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 239 l~~~~-~v~~~~~~~--~~~~I~t~~d~~~a~~~~l~ 272 (411)
+++++ .+.++..++ +|.||++|++|++|++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 211 LLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 88776 566888888 79999999999999998864
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=275.36 Aligned_cols=234 Identities=20% Similarity=0.297 Sum_probs=199.4
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCcceEE
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+||||||| .|+||+|+|..+||+|+||+|+|||+|+|+.|..+ |+++|+|++ ++..+.+++++.++ +.|++++.+
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g-~~~g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDG-SQWGVNLSY 76 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccc-cccCceEEE
Confidence 58999999 99999999999999999999999999999999997 999998766 46667788888774 468889999
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc-cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC-CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
+.+....|++++++.+++++. +++++++.||.+ ++.++..+++.|.+.++++++++.++ .++..||++..| ++
T Consensus 77 ~~q~~~~Gta~al~~a~~~l~---~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v--~~p~~yGvv~~d-~~ 150 (286)
T TIGR01207 77 AVQPSPDGLAQAFIIGEDFIG---GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQV--SDPERYGVVEFD-SN 150 (286)
T ss_pred EEccCCCCHHHHHHHHHHHhC---CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEc--cCHHHCceEEEC-CC
Confidence 998888999999999999996 467888899976 58899999999988888889998888 788899999999 78
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 242 (411)
++|+++.|||..+.++++++|+|+|++++++.+.+..+. ..+.+.+ +|+++.++++
T Consensus 151 g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-----------------------~~ge~ei-tdv~~~~l~~ 206 (286)
T TIGR01207 151 GRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPS-----------------------ARGELEI-TDLNRVYLEE 206 (286)
T ss_pred CeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCC-----------------------CCCcEeH-HHHHHHHHHc
Confidence 899999999988888999999999999999888654321 0122344 7999998888
Q ss_pred CceEEEee-cce-eeecCCccchhhcchHHHh
Q 015225 243 KQLYTYET-MDF-WEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 243 ~~v~~~~~-~~~-~~~I~t~~d~~~a~~~~l~ 272 (411)
+++.++.. .++ |.|++||++|++|+..+..
T Consensus 207 g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~ 238 (286)
T TIGR01207 207 GRLSVELLGRGYAWLDTGTHDSLLEASNFIQT 238 (286)
T ss_pred CCcEEEEecCCCEEEeCCCHHHHHHHHHHHHH
Confidence 77665554 575 9999999999999876643
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=270.27 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=196.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEeccc-chHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY-EEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|+||||||| +|+||+|+|..+||+|+|++|+|||+|+|+++..+ |+++|++++++ ..+.+.+++.+. +.|+..+.
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~ 76 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDG-SDLGIRIT 76 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcc-cccCceEE
Confidence 689999999 99999999999999999999999999999999997 99999987754 457788888764 45777787
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+..+....|++++++.++++++ .+++++++||.++ +.++.++++.|.+.++++++++.+. .++..||.+..| +
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~ 150 (240)
T cd02538 77 YAVQPKPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV--NDPERYGVVEFD-E 150 (240)
T ss_pred EeeCCCCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC--CchhcCceEEec-C
Confidence 7777677899999999999885 4789999999875 6679999999988888888888877 567789999998 7
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|+.+.|||..+.+.+.++|+|+|++++|+.+.+.... ....+.+ .++++.+++
T Consensus 151 ~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~-----------------------~~~~~~l-~d~~~~l~~ 206 (240)
T cd02538 151 NGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPS-----------------------ARGELEI-TDVNNEYLE 206 (240)
T ss_pred CCcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCC-----------------------CCCeEEh-HHHHHHHHH
Confidence 7899999999887777899999999999999887643211 0122334 689999988
Q ss_pred CCceEEEeec--ceeeecCCccchhhcchHH
Q 015225 242 KKQLYTYETM--DFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 242 ~~~v~~~~~~--~~~~~I~t~~d~~~a~~~~ 270 (411)
++++.++..+ ++|.||+||++|+++++.+
T Consensus 207 ~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 207 KGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred hCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 8887777766 9999999999999998754
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=261.98 Aligned_cols=226 Identities=22% Similarity=0.376 Sum_probs=189.0
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCCc--
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELKV-- 79 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~~-- 79 (411)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++..+ |+++|+|++++..+.+.+++.+... .+..
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEe
Confidence 58999999 99999999999999999999999999999999997 9999999999888889999875311 1111
Q ss_pred ---------------ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEe
Q 015225 80 ---------------PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 80 ---------------~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
.+++..+.+..||+++++.+++++. +++|++++||.+++.++.++++.|.+.+++++++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~- 153 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV- 153 (254)
T ss_pred cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe-
Confidence 2233444566899999999999985 578999999999999999999999998888887654
Q ss_pred cCcccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCC
Q 015225 145 VSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTL 224 (411)
Q Consensus 145 ~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (411)
.++..||.+..| + ++|..+.|||... +.+.++|+|+|++++|+.+.+.
T Consensus 154 ---~~~~~yG~v~~d-~-~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~-------------------------- 201 (254)
T TIGR02623 154 ---QPPGRFGALDLE-G-EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD-------------------------- 201 (254)
T ss_pred ---cCCCcccEEEEC-C-CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc--------------------------
Confidence 345779999888 4 5999999998543 6789999999999998877531
Q ss_pred CCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHh
Q 015225 225 PVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 225 ~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
..++..|+++.+++++++++|..+|+|.+|+||++|.+++..+.+
T Consensus 202 ---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 202 ---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred ---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHc
Confidence 112337899999988999999999999999999999888876654
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=258.06 Aligned_cols=234 Identities=25% Similarity=0.408 Sum_probs=199.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| .|+||+|+|...||+|+|++|+|||+|++++|..+ ++++|+|++++..+.+.+++++. ..|+.++.+
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~ 76 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDG-SRFGVRITY 76 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEE
Confidence 789999999 99999999999999999999999999999999997 99999999988888889998764 346777888
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
+.+....|++++++.+++++. .+++++++||++++.++.++++.|.+.++++++++.+. .++..||.+..| ++
T Consensus 77 ~~~~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d--~~ 149 (236)
T cd04189 77 ILQEEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEV--EDPRRFGVAVVD--DG 149 (236)
T ss_pred EECCCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEEC--CCcccceEEEEc--CC
Confidence 877777899999999999885 47899999999999999999999988888888888876 566778988887 45
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 243 (411)
+|..+.|||..+.+.+.++|+|+|++++++.+.+.... ..+.+.+ .++++.+++++
T Consensus 150 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~-----------------------~~~~~~~-~d~~~~~i~~g 205 (236)
T cd04189 150 RIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPS-----------------------WRGELEI-TDAIQWLIDRG 205 (236)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCC-----------------------CCCeEEH-HHHHHHHHHcC
Confidence 99999999876667889999999999999877542110 0122334 68888888665
Q ss_pred -ceEEEeecceeeecCCccchhhcchHHHh
Q 015225 244 -QLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 244 -~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
++.++..+++|.+|+||++|.++++.+++
T Consensus 206 ~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 206 RRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred CcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 79999999999999999999999988775
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=264.71 Aligned_cols=234 Identities=20% Similarity=0.284 Sum_probs=195.6
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccC-----
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNEL----- 77 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~----- 77 (411)
-|+||||||| .|+||+|+|..+||+|+|++|+|+|+|+|+++..+ ++++|+|++++..+.+.+|+.+.. .|
T Consensus 8 ~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~l~ 83 (302)
T PRK13389 8 VKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSF-ELEAMLE 83 (302)
T ss_pred ceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccch-hhhhhhh
Confidence 4889999999 99999999999999999999999999999999997 999999999998888999997531 12
Q ss_pred -----------------CcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--------CChHHHHHHHH
Q 015225 78 -----------------KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--------FPLPDLLEAHK 132 (411)
Q Consensus 78 -----------------~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~ 132 (411)
+..+.++.|....|++++++.+++++. +++|+|++||.+++ .++.+++++|.
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~ 160 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHHHHH
Confidence 234566677778899999999999875 47899999999874 68999999998
Q ss_pred hcCCeeEEEEEecCcccccceeEEEEcC------CCCceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccc
Q 015225 133 RYGGMGTMLVIKVSAESAHQFGELIADP------NTKELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHRED 204 (411)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~v~~d~------~~~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~ 204 (411)
+.+++ ++++.+. +++..||++..|. ++++|..+.|||. ...++++++|+|+|++++|+.+.+....
T Consensus 161 ~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~--- 234 (302)
T PRK13389 161 ETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPG--- 234 (302)
T ss_pred hcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCC---
Confidence 87765 6777776 7788999998761 1347999999986 3457899999999999999888653211
Q ss_pred cccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHH
Q 015225 205 RANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
..+.+.+ +|+++.+++++++++|..+|+|.||++|++|++++..+
T Consensus 235 --------------------~~~e~~l-~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 235 --------------------AGDEIQL-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred --------------------CCCeeeH-HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 1123335 79999999888999999999999999999999998876
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=253.76 Aligned_cols=218 Identities=19% Similarity=0.311 Sum_probs=186.9
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
+||||||| .|+||+|+|..+||+|+|++|+|||+|++++|.++ |+++|+|++++..+.+.+++.+ +.|+..+.+.
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~ 75 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGD--SRFGLRITIS 75 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhc--ccCCceEEEe
Confidence 58999999 99999999999999999999999999999999997 9999999999888889999886 4577778777
Q ss_pred eCC-CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHH--hcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 85 KED-KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHK--RYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 85 ~~~-~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
.+. +..|++++++.+++++. .++|++++||++++.++..+++.|. +.+..+++...+. ++...+|.+..| +
T Consensus 76 ~~~~~~~g~~~~l~~~~~~~~---~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~ 149 (221)
T cd06422 76 DEPDELLETGGGIKKALPLLG---DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLD-A 149 (221)
T ss_pred cCCCcccccHHHHHHHHHhcC---CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEEC-C
Confidence 765 67799999999999985 4789999999999999999999997 4556666666665 566788988888 6
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|..+.++|. ..+.++|+|+|++++++.+.+. .+.+ +++++.+++
T Consensus 150 ~~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~-~d~~~~l~~ 196 (221)
T cd06422 150 DGRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-----------------------------KFSL-NPLWDRAIA 196 (221)
T ss_pred CCcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-----------------------------cccH-HHHHHHHHH
Confidence 789999988874 3788999999999998876431 1123 688888888
Q ss_pred CCceEEEeecceeeecCCccchhhc
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
++++.+|...++|.+|+++++|.+|
T Consensus 197 ~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 197 AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 8899999999999999999999865
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=260.12 Aligned_cols=237 Identities=22% Similarity=0.292 Sum_probs=192.6
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------c-
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------E- 76 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------~- 76 (411)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+.+|+...+. .
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhc
Confidence 689999999 99999999999999999999999999999999997 9999999999988889998865211 0
Q ss_pred -------------CCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC---ChHHHHHHHHhcCCeeEE
Q 015225 77 -------------LKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF---PLPDLLEAHKRYGGMGTM 140 (411)
Q Consensus 77 -------------~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~~ 140 (411)
.+..+.++.+....|++++++.+++++. .++|++++||.++.. ++..+++.|.+.+++ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~ 153 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG---DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VI 153 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC---CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EE
Confidence 1345667777778899999999999985 378999999998743 499999999876665 45
Q ss_pred EEEecCcccccceeEEEEcCC---CCceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhh
Q 015225 141 LVIKVSAESAHQFGELIADPN---TKELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFE 215 (411)
Q Consensus 141 ~~~~~~~~~~~~~g~v~~d~~---~~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (411)
++.+.+.++...||++..|.. +++|..+.|||. ...+.+.++|+|+|++++|+.+.+....
T Consensus 154 ~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~-------------- 219 (267)
T cd02541 154 AVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPG-------------- 219 (267)
T ss_pred EEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCC--------------
Confidence 555554356788999988831 248999999985 3456788999999999999887542110
Q ss_pred hhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHH
Q 015225 216 ALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
..+.+.+ .++++.+++++++++|..+++|.||+||++|+++++.+.
T Consensus 220 ---------~~~e~~~-~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 220 ---------KGGEIQL-TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred ---------CCCcEEH-HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 0122334 688999988889999999999999999999999998763
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=258.45 Aligned_cols=232 Identities=21% Similarity=0.306 Sum_probs=188.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc--------
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN-------- 75 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~-------- 75 (411)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.++ |+++|+|++++..+.+.+|+++.+.
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhh
Confidence 689999999 99999999999999999999999999999999996 9999999999988889999874210
Q ss_pred ----------c-C-CcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC---ChHHHHHHHHhcCCeeEE
Q 015225 76 ----------E-L-KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF---PLPDLLEAHKRYGGMGTM 140 (411)
Q Consensus 76 ----------~-~-~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~~ 140 (411)
. . +..+.+..+....|++++++.+++++. +++|++++||.++.. ++..+++.|.+.++++ +
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i 153 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-I 153 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-E
Confidence 0 0 124556667778899999999999884 578999999999743 6999999998888775 5
Q ss_pred EEEecCcccccceeEEEEcC---CCCceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhh
Q 015225 141 LVIKVSAESAHQFGELIADP---NTKELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFE 215 (411)
Q Consensus 141 ~~~~~~~~~~~~~g~v~~d~---~~~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (411)
++...+.+++..||++..|. ++++|+.+.|||. ...+.++++|+|+|++++|+.+.+....
T Consensus 154 ~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~-------------- 219 (260)
T TIGR01099 154 AVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPG-------------- 219 (260)
T ss_pred EEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCC--------------
Confidence 55555435678899988861 2368999999984 3456789999999999999888643211
Q ss_pred hhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhc
Q 015225 216 ALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
..+.+.+ .++++.+++++++++|..+|+|.||+++++|+++
T Consensus 220 ---------~~~~~~l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 220 ---------AGGEIQL-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred ---------CCCceeH-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 0123344 6889999888899999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=246.76 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=189.2
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+|+|...||+|+|++|+|||+|+++++.++ ++++|+|+++++.+.+.+++... ..++..+.+..
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 76 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVI 76 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEE
Confidence 6999999 99999999999999999999999999999999997 89999999988777888888753 22455666666
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++.+. +++|++++||++++.++..+++.|++.+.++++++.+. ++...|+.+..| ++++|
T Consensus 77 ~~~~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v 150 (223)
T cd06915 77 EPEPLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRV--PDASRYGNVTVD-GDGRV 150 (223)
T ss_pred CCCCCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEEC--CCCCcceeEEEC-CCCeE
Confidence 6677899999999999884 58899999999998899999999988888888888876 556788988888 67899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCce
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 245 (411)
..+.++|....+.+.++|+|+|++++|+.+.+. .+++.+++++.+++++++
T Consensus 151 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~-----------------------------~~~~~~~~~~~l~~~~~v 201 (223)
T cd06915 151 IAFVEKGPGAAPGLINGGVYLLRKEILAEIPAD-----------------------------AFSLEADVLPALVKRGRL 201 (223)
T ss_pred EEEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc-----------------------------CCChHHHHHHHHHhcCcE
Confidence 999998766567789999999999998876432 011226788888877899
Q ss_pred EEEeecceeeecCCccchhhc
Q 015225 246 YTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 246 ~~~~~~~~~~~I~t~~d~~~a 266 (411)
.+|+..++|.+|++++||..|
T Consensus 202 ~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 202 YGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred EEEecCCeEEecCCHHHHHhh
Confidence 999999999999999999887
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=243.61 Aligned_cols=219 Identities=27% Similarity=0.506 Sum_probs=185.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| +|+||+|+|..+||+|+|++|+|||+|++++|.++ ++++|+|++++..+.+++++.+. ..|+.++.++.
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVR 76 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCc-cccCccEEEEE
Confidence 6999999 99999999999999999999999999999999997 99999999998888888888764 34677777777
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|+++++..+.+.. .++|++++||.+.+.++..+++.|++.++++++++.+. .....||.+..| + ++|
T Consensus 77 ~~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~-~~v 148 (220)
T cd06426 77 EDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREY--EVQVPYGVVETE-G-GRI 148 (220)
T ss_pred CCCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEC-C-CEE
Confidence 667789999998776654 48899999999988999999999988888888888775 455678988888 4 899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC-c
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK-Q 244 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-~ 244 (411)
..+.|+|.. +.+.++|+|+|++++++.+.+. .++.+ +++++.+++.+ +
T Consensus 149 ~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~----------------------------~~~~l-~~~~~~~i~~~~~ 197 (220)
T cd06426 149 TSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKN----------------------------EFFDM-PDLIEKLIKEGKK 197 (220)
T ss_pred EEEEECCCC--CCeEEEEEEEEcHHHHhhcCCC----------------------------CCcCH-HHHHHHHHHCCCc
Confidence 999998754 5678999999999998876431 22234 67888887664 7
Q ss_pred eEEEeecceeeecCCccchhhcc
Q 015225 245 LYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 245 v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
+.+|..+++|.+++|+++|.+|+
T Consensus 198 i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 198 VGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEEeCCeEEeCCCHHHHHhhC
Confidence 99999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=248.29 Aligned_cols=225 Identities=23% Similarity=0.390 Sum_probs=185.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCCc---
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELKV--- 79 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~~--- 79 (411)
||||||| +|+||+|+|..+||+|+|++|+|||+|+++.+..+ |+++|+|++++..+.+.+++++..+ .+..
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeec
Confidence 6999999 99999999999999999999999999999999997 9999999999988899999976421 1111
Q ss_pred --ceEEee------------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEec
Q 015225 80 --PVRYLK------------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 80 --~i~~v~------------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
++.+.. +....|++++++.+++++.. +++|++++||.+++.++..+++.|.+.+++++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~- 154 (253)
T cd02524 78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH- 154 (253)
T ss_pred ccceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-
Confidence 111122 22246789999999998851 2789999999999999999999999888888877653
Q ss_pred CcccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCC
Q 015225 146 SAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP 225 (411)
Q Consensus 146 ~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (411)
+...||.+..| ++++|..+.|||... +.+.++|+|+|++++++.+.+.
T Consensus 155 ---~~~~~g~v~~d-~~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~--------------------------- 202 (253)
T cd02524 155 ---PPGRFGELDLD-DDGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD--------------------------- 202 (253)
T ss_pred ---CCCcccEEEEC-CCCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc---------------------------
Confidence 35678989988 678999999998654 5688999999999998877542
Q ss_pred CceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHH
Q 015225 226 VDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 226 ~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
...+..++++.+++++++++|...|+|.+|+|+++|.+++..+
T Consensus 203 --~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 203 --DTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred --cchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHH
Confidence 0112268899999889999999999999999999999998655
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=240.86 Aligned_cols=217 Identities=29% Similarity=0.540 Sum_probs=187.4
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++++..+ ++++|+|++++..+.+++++.+. ..++..+.++.
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVV 76 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEe
Confidence 6999999 99999999999999999999999999999999997 89999999998878888888764 23567788887
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++++. +++|++++||++++.++.++++.|.++++++++++.+. +++..|+.+..| ++++|
T Consensus 77 ~~~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v 150 (217)
T cd04181 77 QEEPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELD-DDGRV 150 (217)
T ss_pred CCCCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEc-CCCcE
Confidence 7777899999999999883 58999999999999999999999998899999998887 577789999998 67899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCce
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 245 (411)
..+.|+|......+.++|+|+|++++++.+.+... ..+.+..++++.+++++++
T Consensus 151 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~~l~~~~~v 204 (217)
T cd04181 151 TRFVEKPTLPESNLANAGIYIFEPEILDYIPEILP--------------------------RGEDELTDAIPLLIEEGKV 204 (217)
T ss_pred EEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC--------------------------cccccHHHHHHHHHhcCCE
Confidence 99999987665688999999999999887765321 0112227899999888999
Q ss_pred EEEeecceeeecC
Q 015225 246 YTYETMDFWEQIK 258 (411)
Q Consensus 246 ~~~~~~~~~~~I~ 258 (411)
++|..+|+|.||+
T Consensus 205 ~~~~~~g~w~dig 217 (217)
T cd04181 205 YGYPVDGYWLDIG 217 (217)
T ss_pred EEEEcCCEEecCC
Confidence 9999999999985
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=235.68 Aligned_cols=243 Identities=20% Similarity=0.278 Sum_probs=207.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhc------
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSIS------ 74 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~------ 74 (411)
|+..+|||+||| .||||.|.|...||-||||.+||+|+|+++.+..+ |+++|++|++.....+.+|++...
T Consensus 2 ~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 2 MKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 466889999999 99999999999999999999999999999999997 999999999988888999987642
Q ss_pred ------------ccC--CcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC---CChHHHHHHHHhcCCe
Q 015225 75 ------------NEL--KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS---FPLPDLLEAHKRYGGM 137 (411)
Q Consensus 75 ------------~~~--~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~---~~l~~~l~~~~~~~~~ 137 (411)
+.. ..++.|+.|.++.|.++|+..|++++. +++|.|+.+|.+.. ..++++++.|.+.+..
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg---~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s 155 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG---DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS 155 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC---CCceEEEeCCeeecCCchHHHHHHHHHHHhCCc
Confidence 111 347789999999999999999999997 78999999999863 2488999999888875
Q ss_pred eEEEEEecCcccccceeEEE----EcCCCCceeEEeccC--CCcccCcccceEEEeCHHHHHHhhhhhhccccccccccc
Q 015225 138 GTMLVIKVSAESAHQFGELI----ADPNTKELLHYTEKP--ETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQV 211 (411)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~v~----~d~~~~~v~~~~e~~--~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~ 211 (411)
++.+.+++.++.+.||++. .+....+|..+.||| ....|+++-.|-|+++|++|+.|++...
T Consensus 156 -vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~----------- 223 (291)
T COG1210 156 -VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKP----------- 223 (291)
T ss_pred -EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCC-----------
Confidence 6777888888899999987 441124899999998 4567999999999999999999987422
Q ss_pred chhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 212 SSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
..++...+ +|.+..|++...+++|.++|..+|+|++..|++++..+..+.
T Consensus 224 ------------G~ggEiQL-TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 224 ------------GAGGEIQL-TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred ------------CCCCEeeH-HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 22355556 999999999999999999999999999999999998876544
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=224.45 Aligned_cols=181 Identities=25% Similarity=0.428 Sum_probs=148.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCC-----
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELK----- 78 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~----- 78 (411)
++||||||| .|+||+|+|..+||||+||+|+|||+|+|++|.++ |+++|+|++++..+.+++|++++ ..|+
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~ 76 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSL 76 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhc-cccccccCc
Confidence 589999999 99999999999999999999999999999999997 99999999998888999999874 2332
Q ss_pred cceEEeeCCCCCCChHHHHHH--HHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhc-----CCeeEEEEEecCccc--
Q 015225 79 VPVRYLKEDKPHGSAGGLYYF--RDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRY-----GGMGTMLVIKVSAES-- 149 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~~~l~~~--~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~-- 149 (411)
..+.++.+.+..++++++... ++.+ .++|++++||.+++.++.+++++|+++ ++++|+++.+.+...
T Consensus 77 ~~i~~~~~~~~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~ 152 (217)
T cd04197 77 MIVIIIMSEDCRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRT 152 (217)
T ss_pred ceEEEEeCCCcCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcccc
Confidence 356777777777888888653 3333 378999999999999999999999874 788898888873222
Q ss_pred --ccceeEEEEcCCCCceeEEeccCCCc--------------------ccCcccceEEEeCHHHH
Q 015225 150 --AHQFGELIADPNTKELLHYTEKPETF--------------------VSDLINCGVYVFTPDFF 192 (411)
Q Consensus 150 --~~~~g~v~~d~~~~~v~~~~e~~~~~--------------------~~~~~~~Giyi~~~~~~ 192 (411)
...++++..|.++++|+.+.|+|..+ .+++.++|+|+|+++++
T Consensus 153 ~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 153 RRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 11356788884558999999987432 38999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=221.28 Aligned_cols=226 Identities=20% Similarity=0.319 Sum_probs=168.9
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+.+++++. .+..+.+..
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~ 74 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNP 74 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhcc---CCeEEEeCc
Confidence 6999999 99999999999999999999999999999999997 99999999998888888888652 233333333
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++++. ++|++++||++++. ++++.|.+.++++++++.+........++....| .+++
T Consensus 75 ~~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 145 (229)
T cd02523 75 DYAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVL 145 (229)
T ss_pred chhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccce
Confidence 3346799999999999883 78999999999754 5677777778888888876422223334433333 3688
Q ss_pred eEEeccCCCcc-cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC-
Q 015225 166 LHYTEKPETFV-SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK- 243 (411)
Q Consensus 166 ~~~~e~~~~~~-~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~- 243 (411)
..+.+++..+. ..+.++|+|+|++++++.+.+......+.. .....+ +++++.++++.
T Consensus 146 ~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~-------------------~~~~~~-~d~i~~l~~~~~ 205 (229)
T cd02523 146 LGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAG-------------------RVNLYY-EDALQRLISEEG 205 (229)
T ss_pred EeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcc-------------------cccccH-HHHHHHHHhhcC
Confidence 88888875443 457899999999999988766443221100 011113 68888888744
Q ss_pred -ceEEEeecceeeecCCccchhhcc
Q 015225 244 -QLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 244 -~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
.++.+.. ++|.+|+++++|++|+
T Consensus 206 ~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 206 VKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 4445555 8999999999998874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=213.81 Aligned_cols=187 Identities=25% Similarity=0.461 Sum_probs=153.0
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc----
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP---- 80 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~---- 80 (411)
||||||| +|+||+|+|...||+|+|++|+ |||+|+++++..+ |+++++|+++++.+.+.+++.+. +.|+.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~ 76 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNG 76 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCC
Confidence 6999999 9999999999999999999999 9999999999997 99999999999888899998764 334432
Q ss_pred -eEEee------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccce
Q 015225 81 -VRYLK------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQF 153 (411)
Q Consensus 81 -i~~v~------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (411)
+.++. +++..|++++++.+++++....+++|++++||.+++.++..+++.|+++++++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~---------- 146 (200)
T cd02508 77 GLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK---------- 146 (200)
T ss_pred CEEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh----------
Confidence 34432 3456899999999999986433478999999999999999999999888887776653
Q ss_pred eEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCCCCceeeec
Q 015225 154 GELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLD 232 (411)
Q Consensus 154 g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (411)
.++|+|+|++++|. .+.+... .+...+.
T Consensus 147 --------------------------~~~g~yi~~~~~~~~~l~~~~~-------------------------~~~~~~~ 175 (200)
T cd02508 147 --------------------------ASMGIYIFSKDLLIELLEEDAA-------------------------DGSHDFG 175 (200)
T ss_pred --------------------------hcCEEEEEEHHHHHHHHHHHhc-------------------------cCcchhH
Confidence 56999999999985 4443211 0111233
Q ss_pred cchhhcccCCCceEEEeecceeeec
Q 015225 233 QDILSPLAGKKQLYTYETMDFWEQI 257 (411)
Q Consensus 233 ~d~l~~l~~~~~v~~~~~~~~~~~I 257 (411)
+|+++.+++++++++|..+++|.||
T Consensus 176 ~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 176 KDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHHhccCcEEEEEeCCeEecC
Confidence 8999999988999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=212.90 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=166.8
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch---HHHHHHHhhhcccCCcceE
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE---REFALYVSSISNELKVPVR 82 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~---~~i~~~~~~~~~~~~~~i~ 82 (411)
+|||||| +|+||+|+|..+||+|+|++|+|||+|+++.+..+ |++++++++.... +.+.+++... ..+..+.
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~ 75 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKI-FDSRFIFICRDEHNTKFHLDESLKLL--APNATVV 75 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhcc-CCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEE
Confidence 4899999 99999999999999999999999999999999997 8999998875322 1122222221 1233443
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
+ .+....|++++++.++..+. .+++|++++||++++.++..+++.|.+.+.++++++... +...|+.+..| ++
T Consensus 76 ~-~~~~~~g~~~~l~~a~~~l~--~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d-~~ 148 (231)
T cd04183 76 E-LDGETLGAACTVLLAADLID--NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLD-EN 148 (231)
T ss_pred E-eCCCCCcHHHHHHHHHhhcC--CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEEC-CC
Confidence 3 34567899999999999884 147899999999999999999998877777767666653 34578999888 68
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHH-HH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPD-FF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++|..+.+++. .+.+.++|+|+|+++ .| +.+.+....... ..+.+.+ .++++.++
T Consensus 149 ~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~~-~d~i~~~~ 205 (231)
T cd04183 149 GRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDS--------------------VNGEFYI-SPLYNELI 205 (231)
T ss_pred CCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhccc--------------------ccCcEEE-hHHHHHHH
Confidence 89999988743 356889999999997 43 444432111100 0122223 68899888
Q ss_pred CCC-ceEEEee-cceeeecCCccch
Q 015225 241 GKK-QLYTYET-MDFWEQIKTPGMS 263 (411)
Q Consensus 241 ~~~-~v~~~~~-~~~~~~I~t~~d~ 263 (411)
+++ ++.++.. .++|.+|+||++|
T Consensus 206 ~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 206 LDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HcCCEEEEEEeccccEEEcCChHhc
Confidence 776 6999998 5899999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=207.65 Aligned_cols=247 Identities=15% Similarity=0.192 Sum_probs=170.0
Q ss_pred eEEEEEecCCCCCcccccCCC-CCCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLSF-NTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~-~~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
|++|||||| .|+||+|+|. .+||+|+|++| +|||+++++++..+.++++|+|++++.. +.+++++.+ ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 689999999 9999999997 79999999999 9999999999999734999999988643 455666654 2235
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhcc-CCCeEEEEcCCcccC--CChHHHHHHHHh---cCCeeEEEEEecCccccccee
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEE-NPSHIILLNCDVCCS--FPLPDLLEAHKR---YGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~-~~~~~lv~~~D~i~~--~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~g 154 (411)
+.++.+....||++++..++..+.+. +++.++|++||+++. .++.+.++.+.+ .+..+|+...+. ...+.||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 67777777889999999999888642 356899999999874 456666665443 567778887776 6668899
Q ss_pred EEEEcCCC--C---ceeEEeccCCCc--------ccCcccceEEEeCHHH-HHHhhhhhhcccccccccccch-hh-hhh
Q 015225 155 ELIADPNT--K---ELLHYTEKPETF--------VSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSS-FE-ALQ 218 (411)
Q Consensus 155 ~v~~d~~~--~---~v~~~~e~~~~~--------~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~-~~-~~~ 218 (411)
++..| ++ + +|.+|.|||+.. ...++|+|+|+|+++. ++.|.+..+...+......... ++ ...
T Consensus 153 yI~~~-~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (274)
T cd02509 153 YIEAG-EKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLR 231 (274)
T ss_pred EEEeC-CcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhh
Confidence 99988 44 2 899999999642 1247899999999864 4666655443321111000000 00 000
Q ss_pred h-cccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccc
Q 015225 219 S-ATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGM 262 (411)
Q Consensus 219 ~-~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d 262 (411)
. ..........+++..+ |.+..++.+++.+..|.|+|+...
T Consensus 232 ~~~~~~~~~~~~sidyav---me~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 232 LLEEAFAKIPSISIDYAV---MEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred hhHHHHhhCCCcccchHh---heeCCCcEEEecCCCcCcccCccc
Confidence 0 0000011222232222 334567888888889999999764
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=204.00 Aligned_cols=182 Identities=28% Similarity=0.476 Sum_probs=144.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCC--
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELK-- 78 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~-- 78 (411)
|+||||||| .|+||.|+|...||+|+|++|+|||+|++++|.++ |+++|+|+++++.+.+.+++.+... ..+
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCce
Confidence 689999999 99999999999999999999999999999999996 9999999999888788888876421 112
Q ss_pred cceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHH--HHhcCCeeEEEEEecCccc-------
Q 015225 79 VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEA--HKRYGGMGTMLVIKVSAES------- 149 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~------- 149 (411)
..+.+..+....|++++++.+++.+. ++|++++||++++.++..++++ +...+.++++++.......
T Consensus 78 v~~~~~~~~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (216)
T cd02507 78 VDVITSDLCESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKK 153 (216)
T ss_pred EEEEEccCCCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcccccc
Confidence 23344455678899999999999884 7899999999999999999975 4455666666666543222
Q ss_pred ccceeEEEEcCCC--CceeEEeccCCC------------------cccCcccceEEEeCHHHH
Q 015225 150 AHQFGELIADPNT--KELLHYTEKPET------------------FVSDLINCGVYVFTPDFF 192 (411)
Q Consensus 150 ~~~~g~v~~d~~~--~~v~~~~e~~~~------------------~~~~~~~~Giyi~~~~~~ 192 (411)
...++.+..|+++ .+++.+.+++.. ..+++.++|+|+|+++++
T Consensus 154 ~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 154 TEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 4567888899555 466666665432 358999999999999863
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=203.17 Aligned_cols=182 Identities=28% Similarity=0.449 Sum_probs=147.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhc--ccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSIS--NELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~--~~~~~~ 80 (411)
|+||||||| +|+||+|+|...||+|+|++|+|||+|++++|.++ ++++|+|++++.. +.+++++.... ...+..
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~ 77 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLD 77 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCccee
Confidence 689999999 99999999999999999999999999999999996 9999999988644 56777776531 111233
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcc-----------c
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAE-----------S 149 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~ 149 (411)
+.+..+....|++++++.+.+.+. ++|++++||.+++.++..+++.|++.++.+|+++.+.... .
T Consensus 78 ~~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04198 78 EVTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKK 153 (214)
T ss_pred EEEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccC
Confidence 445556778899999999999873 7899999999999999999999999999999988875311 1
Q ss_pred ccceeEEEEcCCCCceeEEeccC------------------CCcccCcccceEEEeCHHHH
Q 015225 150 AHQFGELIADPNTKELLHYTEKP------------------ETFVSDLINCGVYVFTPDFF 192 (411)
Q Consensus 150 ~~~~g~v~~d~~~~~v~~~~e~~------------------~~~~~~~~~~Giyi~~~~~~ 192 (411)
...+.++..|+++++++.+.... -...+++.++|+|+|+++++
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 23466788887889999887521 12358999999999998763
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=197.30 Aligned_cols=218 Identities=23% Similarity=0.373 Sum_probs=168.0
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||++ ..||+|+|++|+|||+|+++++.++ ++++++|++++..+.+.+++.+ . .+.++.
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~----~--~~~~~~ 68 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALAN----P--NVEFVL 68 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCC----C--CcEEEE
Confidence 6999999 9999987 7899999999999999999999997 8999999888777777777754 2 345566
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
+....|++++++.+++.+.. ..++|++++||.++ ..++..+++.|.+.++++++...+. .++..|+.+..| +++
T Consensus 69 ~~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~-~~~ 144 (229)
T cd02540 69 QEEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRD-GNG 144 (229)
T ss_pred CCCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEc-CCC
Confidence 66668999999999998852 24789999999954 6679999999987777777777766 567788888777 678
Q ss_pred ceeEEeccCCCc----ccCcccceEEEeCHHH-HHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 164 ELLHYTEKPETF----VSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 164 ~v~~~~e~~~~~----~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
+|..+.|++... ...+.++|+|+|+++. ++.+.+..... ....+.+ +++++.
T Consensus 145 ~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~----------------------~~~~~~~-~d~~~~ 201 (229)
T cd02540 145 KVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNN----------------------AQGEYYL-TDIIAL 201 (229)
T ss_pred CEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHccccc----------------------CCCcEEH-HHHHHH
Confidence 999999876421 1367899999999865 45554432110 0122224 788998
Q ss_pred ccCCC-ceEEEeecce--eeecCCccc
Q 015225 239 LAGKK-QLYTYETMDF--WEQIKTPGM 262 (411)
Q Consensus 239 l~~~~-~v~~~~~~~~--~~~I~t~~d 262 (411)
+++.+ +++++..+|+ |+.|++|.+
T Consensus 202 ~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 202 AVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred HHHCCCEEEEEEcCCcceEecCCChHh
Confidence 88765 7999999875 566677765
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=187.99 Aligned_cols=230 Identities=15% Similarity=0.248 Sum_probs=156.4
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~ 79 (411)
|..|+||||||| +|+||+| ..||||+.++|+++|+|++++|.++ |++++++|+ ++..+.+++++.++ .+..
T Consensus 1 ~~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~--~~~~ 72 (239)
T COG1213 1 MHPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKY--PFNA 72 (239)
T ss_pred CCceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcC--Ccce
Confidence 889999999999 9999999 9999999999999999999999997 999999998 77788888888763 1223
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
++.+.+.++..+++.||+.|.+++. +.|++++||+++... +++...+..+...++. ..+......-.....+
T Consensus 73 ~iv~N~~y~ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~---~~e~l~~a~~~~li~d-~~~~~~~~~ea~kv~~ 144 (239)
T COG1213 73 KIVINSDYEKTNTGYSLLLAKDYMD----GRFILVMSDHVYEPS---ILERLLEAPGEGLIVD-RRPRYVGVEEATKVKD 144 (239)
T ss_pred EEEeCCCcccCCceeEEeeehhhhc----CcEEEEeCCEeecHH---HHHHHHhCcCCcEEEe-ccccccccCceeEEEe
Confidence 3333344455567999999999985 779999999998644 3343344333322332 2221222222223444
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
++|++..+..+-. ..+..++|++.+++++|..+.+...+... +.+ .++....
T Consensus 145 -e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~------------------------~~~-~~~~~~~ 196 (239)
T COG1213 145 -EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSE------------------------YDY-REVEKEA 196 (239)
T ss_pred -cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhh------------------------HHH-HHHHHHh
Confidence 6899999887643 46678899999999988877665432211 000 1111111
Q ss_pred c-CCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 240 A-GKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 240 ~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
. ....+-......+|.+|+||+|+.++.+.+....
T Consensus 197 ~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 197 GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred CCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 0 0011111111348999999999999988776544
|
|
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=190.86 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=158.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||. +|+|+|++|+|||+|+++.|.+. ++++|+|++++ +.+.+++.. ++.++.
T Consensus 2 ~~~~iIlA~g--~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~--~~i~~~~~~----~~~~v~ 66 (245)
T PRK05450 2 KFLIIIPARY--ASTRLP------GKPLADIGGKPMIVRVYERASKA-GADRVVVATDD--ERIADAVEA----FGGEVV 66 (245)
T ss_pred ceEEEEecCC--CCCCCC------CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCc--HHHHHHHHH----cCCEEE
Confidence 5889999999 999994 59999999999999999999997 99999988763 446666643 345555
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecC----cccccceeEE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVS----AESAHQFGEL 156 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~g~v 156 (411)
+..+....|+++.. .+...+.....+.+++++||+++ ...+..+++.|.+.+.+.+++..+.. ..++..++++
T Consensus 67 ~~~~~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (245)
T PRK05450 67 MTSPDHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV 145 (245)
T ss_pred ECCCcCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE
Confidence 55455555665443 34444421124678999999964 56789999988766566555554431 1234455644
Q ss_pred EEcCCCCceeEEeccCCC----------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCC
Q 015225 157 IADPNTKELLHYTEKPET----------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPV 226 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~~----------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
.| ++++|+.|.|+|.. ..+.+.++|+|+|++++++.+.+..+...
T Consensus 146 -~d-~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~----------------------- 200 (245)
T PRK05450 146 -LD-ADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPL----------------------- 200 (245)
T ss_pred -eC-CCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCcc-----------------------
Confidence 77 68999999998731 23589999999999999988776321100
Q ss_pred ceeeeccchhhcccCCCceEEEeecc-eeeecCCccchhhcchHH
Q 015225 227 DFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~~~ 270 (411)
+.... .++++.+.++.+++++..++ +|.+||+|+||.+|++.+
T Consensus 201 ~~~~~-~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIES-LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchh-HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 00000 12234344556899999986 999999999999998643
|
|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=206.29 Aligned_cols=252 Identities=14% Similarity=0.201 Sum_probs=167.1
Q ss_pred eEEEEEecCCCCCcccccCCCC-CCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFN-TPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
|.+|||||| .|+||+|+|.. +||+|+|+.| +|||+|+++.|..+ ++++++|+++... ..+++.+.. ++.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~----~~~~ 73 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLRE----IGKL 73 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHH----cCCC
Confidence 679999999 99999999996 8999999976 89999999999997 8999998887443 334444443 3333
Q ss_pred -eEEeeCCCCCCChHHHHHHHHHhhcc--CCCeEEEEcCCcccC--CChHHHHHHH---HhcCCeeEEEEEecCcccccc
Q 015225 81 -VRYLKEDKPHGSAGGLYYFRDMIMEE--NPSHIILLNCDVCCS--FPLPDLLEAH---KRYGGMGTMLVIKVSAESAHQ 152 (411)
Q Consensus 81 -i~~v~~~~~~g~~~~l~~~~~~i~~~--~~~~~lv~~~D~i~~--~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 152 (411)
..++.++...||++++..+...+.+. .++.++|++||++.. ..+..+++++ .+.+..+++...+. ...+.
T Consensus 74 ~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~ 151 (468)
T TIGR01479 74 ASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETG 151 (468)
T ss_pred cceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCC
Confidence 35777788889999998877766432 234589999998763 3478887764 33455666666554 66689
Q ss_pred eeEEEEcCC-----CCceeEEeccCCCcc--------cCcccceEEEeCHH-HHHHhhhhhhcccccccccccch-h--h
Q 015225 153 FGELIADPN-----TKELLHYTEKPETFV--------SDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSS-F--E 215 (411)
Q Consensus 153 ~g~v~~d~~-----~~~v~~~~e~~~~~~--------~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~-~--~ 215 (411)
||++..|++ .++|..|.|||+... ..++|+|+|+|+++ +++.|.+..+...+......... + +
T Consensus 152 YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~ 231 (468)
T TIGR01479 152 YGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLD 231 (468)
T ss_pred ceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcc
Confidence 999998731 258999999986421 35899999999975 44555554433211110000000 0 0
Q ss_pred hhhh-cccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcc
Q 015225 216 ALQS-ATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 216 ~~~~-~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
...+ ..........+++..+ |.+..++.+++....|.|+++++++++..
T Consensus 232 ~~~~~~~~~~~~~~iSiDyav---mEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 232 FIRLDKEAFEQCPSESIDYAV---MEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred cceeCHHHHhhCcCCCeeeee---eEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 0000 0000001111221222 33445789999888999999999887764
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=188.11 Aligned_cols=220 Identities=19% Similarity=0.204 Sum_probs=156.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||. ||+|+|++|+|||+|+++.+.+++++++|+|++++ +.+.+++.+ ++.++.
T Consensus 1 ~~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~ 66 (239)
T cd02517 1 KVIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVV 66 (239)
T ss_pred CEEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEE
Confidence 3689999999 999995 59999999999999999999985479999998764 456666654 344555
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhc-CCeeEEEEEecCccccc---ceeE-
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRY-GGMGTMLVIKVSAESAH---QFGE- 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~---~~g~- 155 (411)
+..+....|+++ +..+++.+. ...+.|++++||.++ ...+..+++.|.+. +.++++++.+. .++. .++.
T Consensus 67 ~~~~~~~~gt~~-~~~~~~~~~-~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 142 (239)
T cd02517 67 MTSPDHPSGTDR-IAEVAEKLD-ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPI--SDEEELFNPNVV 142 (239)
T ss_pred EcCcccCchhHH-HHHHHHhcC-CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEc--CCHHHccCCCCC
Confidence 444444567764 666666553 113779999999853 66789999988766 67777777765 3322 2333
Q ss_pred -EEEcCCCCceeEEeccCC-------CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCc
Q 015225 156 -LIADPNTKELLHYTEKPE-------TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVD 227 (411)
Q Consensus 156 -v~~d~~~~~v~~~~e~~~-------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (411)
|..| ++++|+.+.+++. .+.+.+.++|+|+|++++++.+.+.... ++
T Consensus 143 ~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~--------~~---------------- 197 (239)
T cd02517 143 KVVLD-KDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPS--------PL---------------- 197 (239)
T ss_pred EEEEC-CCCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCc--------hh----------------
Confidence 5566 5788988876532 1236789999999999999877553110 00
Q ss_pred eeeeccchhh--cccCC-CceEEEeecceeeecCCccchhhcch
Q 015225 228 FVRLDQDILS--PLAGK-KQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 228 ~~~l~~d~l~--~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
.+ ++.+. .+++. .+++++..+++|.+|+||++|.++++
T Consensus 198 --~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 198 --EQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred --hh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 01 22222 23444 46999988889999999999998864
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=180.00 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=153.6
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.|||||+| .|+||. +|+|+|++|+|||+|+++.+.+++++++|+|++++ +.+.+++.. ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 5889999999 999994 49999999999999999999996479999998864 456677654 455555
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCC-eeEEEEEecCc--c--cccceeE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGG-MGTMLVIKVSA--E--SAHQFGE 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~-~~~~~~~~~~~--~--~~~~~g~ 155 (411)
+..+....|++ .+..+.+.+. .+.|++++||.++ ..++..+++.+.+.+. ++++++.+... . ++..++.
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 143 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV 143 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE
Confidence 54444445665 4666666653 4789999999864 6779999998876543 44445544311 1 1333443
Q ss_pred EEEcCCCCceeEEeccC--C--C--cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCcee
Q 015225 156 LIADPNTKELLHYTEKP--E--T--FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFV 229 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~--~--~--~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (411)
..+ ++++++.+.++| . + ..+.+.++|+|+|++++|..+.+.... +..
T Consensus 144 -~~~-~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~-------------------------~~~ 196 (238)
T PRK13368 144 -VVD-KNGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET-------------------------PLE 196 (238)
T ss_pred -EEC-CCCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCC-------------------------hhh
Confidence 445 468999988653 1 1 114478999999999999876542110 000
Q ss_pred eecc-chhhcccCCCceEEEeecceeeecCCccchhhcch
Q 015225 230 RLDQ-DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 230 ~l~~-d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
.+.. +++..+..+.++.++..+++|.||++|+||..++.
T Consensus 197 ~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 197 QIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 1112 45533335557999998899999999999998864
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=153.36 Aligned_cols=170 Identities=21% Similarity=0.376 Sum_probs=124.3
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.||||||| .||||.|+|.++||+|++|.|+|||+++++.|.++ ||.+|+||+++..++. +|+.+ ++++++.+
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvy 73 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQF-EYLKD---KYDVTLVY 73 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHH-HHHHH---hcCeEEEe
Confidence 679999999 99999999999999999999999999999999997 9999999999887764 56664 46777777
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
.+.........+++.|+++++ ...++.+|.....+ ++..+..+. .- ....+. ....+|- ...+ .++
T Consensus 74 N~kY~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN---if~~~~~~S-~Y-fav~~~--~~tnEw~-l~~~-~~~ 139 (231)
T COG4750 74 NPKYREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN---IFLTKESHS-KY-FAVYRS--GKTNEWL-LIYN-SDG 139 (231)
T ss_pred CchHHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh---hhhcCcccc-eE-EEEEec--CCCceeE-EEEc-CCC
Confidence 776666788999999999995 56777999875332 222222111 11 122222 2333443 3444 588
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhh
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~ 197 (411)
+|+++.-.. ...+..+|+.+|+...-+.+..
T Consensus 140 ki~~v~Igg---~~~~imsG~sff~~~~~~ki~~ 170 (231)
T COG4750 140 KITRVDIGG---LNGYIMSGISFFDAQFSNKIKK 170 (231)
T ss_pred cEEEEEecC---cccceEeeeeeecchhHHHHHH
Confidence 999886542 2456788999999865444443
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=177.64 Aligned_cols=252 Identities=15% Similarity=0.173 Sum_probs=163.9
Q ss_pred ceEEEEEecCCCCCcccccCCCC-CCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFN-TPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKV 79 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~ 79 (411)
+|.+|||||| .|+||+|+|.. .||+|+|+.| +|||+++++.+... ++.+.+|+++.. .+.+++.+.+. +.
T Consensus 5 ~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~----~~ 77 (478)
T PRK15460 5 KLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQL----NK 77 (478)
T ss_pred ceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhc----CC
Confidence 4799999999 99999999997 6999999965 69999999999986 777776777643 35555555542 21
Q ss_pred -ceEEeeCCCCCCChHHHHHHHHHhhccC---CCeEEEEcCCcccCC--ChHHHHHHHH---hcCCeeEEEEEecCcccc
Q 015225 80 -PVRYLKEDKPHGSAGGLYYFRDMIMEEN---PSHIILLNCDVCCSF--PLPDLLEAHK---RYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 80 -~i~~v~~~~~~g~~~~l~~~~~~i~~~~---~~~~lv~~~D~i~~~--~l~~~l~~~~---~~~~~~~~~~~~~~~~~~ 150 (411)
.-.++.++...+|+.++..|.-.+.+.. +..++++++|++... .+.+.++... +.+..+|+...+. ...
T Consensus 78 ~~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt--~Pe 155 (478)
T PRK15460 78 LTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD--LPE 155 (478)
T ss_pred ccccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC--CCC
Confidence 2366777788899999888776665432 356889999998522 2444444332 2356666666665 677
Q ss_pred cceeEEEEcCCC--------CceeEEeccCCC--------cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccch
Q 015225 151 HQFGELIADPNT--------KELLHYTEKPET--------FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSS 213 (411)
Q Consensus 151 ~~~g~v~~d~~~--------~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 213 (411)
+.||++..+..- .+|.+|.|||+. .-..++|+|+|+|+.+ +++.|++..+.............
T Consensus 156 TgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~ 235 (478)
T PRK15460 156 TGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAV 235 (478)
T ss_pred CCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhc
Confidence 889999876221 269999999963 1246899999999985 56777776554322111100000
Q ss_pred -h--hhhhh-cccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhc
Q 015225 214 -F--EALQS-ATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 214 -~--~~~~~-~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
+ +...+ ..........+++..+ |.+..++.+++...-|.|+|+..++.+.
T Consensus 236 ~~~~~~~~l~~~~~~~~~~iSiDyav---mEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 236 DPDLDFIRVDEEAFLACPEESVDYAV---MERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred cCcccceeeCHHHHhhCcCcchhhhh---hcccCceEEEecCCCccccCCHHHHHHh
Confidence 0 00000 0000011222232222 3344568888888889999998877665
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=158.50 Aligned_cols=255 Identities=14% Similarity=0.199 Sum_probs=166.3
Q ss_pred ceEEEEEecCCCCCcccccCCC-CCCccCccc-CCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSF-NTPKPLFPL-AGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKV 79 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~-~~pK~llpi-~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~ 79 (411)
.|..|||||| .|+|||||++ ..||++|++ ++++|++.+++++....+.+++++|++.++ ..+++.+.+.... .
T Consensus 1 ~~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~--~ 76 (333)
T COG0836 1 MMIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE--N 76 (333)
T ss_pred CceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc--c
Confidence 3789999999 9999999998 679999999 458999999999999657899999998654 4455555542111 1
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccC-CCeEEEEcCCcccCC--ChHHHHHHH---HhcCCeeEEEEEecCcccccce
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEEN-PSHIILLNCDVCCSF--PLPDLLEAH---KRYGGMGTMLVIKVSAESAHQF 153 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~-~~~~lv~~~D~i~~~--~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (411)
.-.++.++....|+.++..+.-.+.+.. +.-++|+++|++... .+.+.++.. .+.+..+|+...+. ...+.|
T Consensus 77 ~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGY 154 (333)
T COG0836 77 AAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGY 154 (333)
T ss_pred ccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCC--CCccCc
Confidence 1125666778899999988766554433 446889999998632 355555543 34456667666665 677889
Q ss_pred eEEEEcCC-----CCceeEEeccCCC--------cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchh--hhh
Q 015225 154 GELIADPN-----TKELLHYTEKPET--------FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSF--EAL 217 (411)
Q Consensus 154 g~v~~d~~-----~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~--~~~ 217 (411)
|++..... .-+|.+|.|||+. .-..++|+|+|+|+.. +++.+++..+...+......-... +.+
T Consensus 155 GYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~ 234 (333)
T COG0836 155 GYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSV 234 (333)
T ss_pred ceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchh
Confidence 99986311 3378999999963 2247899999999985 567777665443211110000000 000
Q ss_pred hhcccC-CCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhc
Q 015225 218 QSATRT-LPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 218 ~~~~~~-~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
.+..+. ......+++..+ |.+..++.+++..-.|-|+|+...+++.
T Consensus 235 ~l~~e~f~~~p~iSIDYAi---MEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 235 RLDNEAYEEIPAISIDYAI---MEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred cccHHHHhhCcccchhHHH---HhhhcceEEEecCCCcccccCHHHHHHH
Confidence 000000 011222222222 4456789999988899999998766554
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=159.41 Aligned_cols=228 Identities=15% Similarity=0.157 Sum_probs=152.2
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+||||+| .|+||. +|+|++++|+|||+|+++.+..+..++.|+ ++ .+.+.+.+++.+ ++.++.
T Consensus 47 ~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VV-V~-~~~e~I~~~~~~----~~v~vi 112 (293)
T PLN02917 47 RVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIV-VA-TDDERIAECCRG----FGADVI 112 (293)
T ss_pred cEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEE-EE-CChHHHHHHHHH----cCCEEE
Confidence 4679999999 999994 499999999999999999999863345544 43 334556666653 233333
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEE--ecCcccccceeEEE-
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVI--KVSAESAHQFGELI- 157 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~g~v~- 157 (411)
...+....|+++. ..+.+.+.. ..+.+++++||.++ ...+..+++.+.+. .++++++. ....+++..||.+.
T Consensus 113 ~~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~v 189 (293)
T PLN02917 113 MTSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKC 189 (293)
T ss_pred eCCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEE
Confidence 3334455576665 567777742 24789999999985 56689999987644 33333332 12226778899874
Q ss_pred -EcCCCCceeEEecc-----CC----CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCc
Q 015225 158 -ADPNTKELLHYTEK-----PE----TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVD 227 (411)
Q Consensus 158 -~d~~~~~v~~~~e~-----~~----~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (411)
.| ++|+++.|..+ .+ .....+.++|+|.|+.+.|..+.+..+ .+.+.+||+
T Consensus 190 v~~-~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~----~n~e~e~yL-------------- 250 (293)
T PLN02917 190 VVD-NQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPP----TPLQLEEDL-------------- 250 (293)
T ss_pred EEC-CCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCC----Ccccchhcc--------------
Confidence 67 67886644422 11 122357899999999998877754432 223344443
Q ss_pred eeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHh
Q 015225 228 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 228 ~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
+|+. .+.++.++.++..+....-|+|++|+.++++.+.+
T Consensus 251 -----tdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 251 -----EQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred -----HHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 5665 33344478877765556689999999999876643
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=152.84 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=101.1
Q ss_pred ceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcC-------ccc--ccc-CCCCCCcEEcCC
Q 015225 227 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITS-------PQL--LAS-GNGITSATIAGD 296 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~-------~~~--~~~-~~~~~~~~~~~~ 296 (411)
++.+| +|.++.|++.+ .+...+||.|+ ++|+++++.+|+.+.... +.. ... ....+++.+.++
T Consensus 26 ~~~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~ 98 (231)
T TIGR03532 26 EQVDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQ 98 (231)
T ss_pred ccccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCC
Confidence 44556 78999998766 77888999999 999999999998753100 000 000 011245556666
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCCCEECCCcEEecC
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~~~~i~~~ 366 (411)
++||+++.|++++.|.++++||++|.|++++.|. +++||++|.|+.++.|.+ ++|+++|.||.++.+..+
T Consensus 99 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g 178 (231)
T TIGR03532 99 VIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEG 178 (231)
T ss_pred eEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCC
Confidence 7777777777777777777777777777777775 677777777777777753 566666666666666655
Q ss_pred CcCCcccceeEECCCCEECCCcEEc
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||+++.|+++++|.
T Consensus 179 ---------~~Ig~~~~IgagsvV~ 194 (231)
T TIGR03532 179 ---------VRVGKGAVVAAGAIVT 194 (231)
T ss_pred ---------CEECCCCEECCCCEEc
Confidence 6666666666666663
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=134.29 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=141.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
+||+|+| .|+||. +|+|++++|+|||.|+++.+... ++++|+|++.. +.+.+++.+ ++.++....
T Consensus 2 ~iIpA~g--~s~R~~------~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~ 66 (238)
T TIGR00466 2 VIIPARL--ASSRLP------GKPLEDIFGKPMIVHVAENANES-GADRCIVATDD--ESVAQTCQK----FGIEVCMTS 66 (238)
T ss_pred EEEecCC--CCCCCC------CCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCH--HHHHHHHHH----cCCEEEEeC
Confidence 7999999 999994 69999999999999999999986 79999998753 345555543 343333222
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccc-----ceeEEEE
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAH-----QFGELIA 158 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~g~v~~ 158 (411)
.....| .+.+..+.+.+.....+.++++.||.++ ...+..+++.+.+..++++.+..+. .+.. ....+..
T Consensus 67 ~~~~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~--~d~~~~~~p~~vk~v~ 143 (238)
T TIGR00466 67 KHHNSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKI--HDAEEAFNPNAVKVVL 143 (238)
T ss_pred CCCCCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeec--CCHHHccCCCceEEEe
Confidence 233333 3344444444421124678899999985 5568999998765556666666665 2311 1233455
Q ss_pred cCCCCceeEEeccCC-----------Cccc--CcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCC
Q 015225 159 DPNTKELLHYTEKPE-----------TFVS--DLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP 225 (411)
Q Consensus 159 d~~~~~v~~~~e~~~-----------~~~~--~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (411)
| .+++++.|.+.+- ++.. .+...|+|.|+++.|..+..+.+...+
T Consensus 144 ~-~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le--------------------- 201 (238)
T TIGR00466 144 D-SQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLE--------------------- 201 (238)
T ss_pred C-CCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCccc---------------------
Confidence 6 5777766665411 1111 466899999999999888765432211
Q ss_pred CceeeeccchhhcccCCCceEEEeecce-eeecCCccch
Q 015225 226 VDFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 263 (411)
Q Consensus 226 ~~~~~l~~d~l~~l~~~~~v~~~~~~~~-~~~I~t~~d~ 263 (411)
...+ -+-|+.|..+.++.+...++. -..||||+|+
T Consensus 202 -~~e~--leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 -EIEK--LEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred -ccch--hHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1111 234666667778988877655 4589999986
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=129.11 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=95.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
+++.+.++++||+++.|++++.|+++++||++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+.+...
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~ 107 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRF 107 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCc
Confidence 56777888899999999999999988999999999999999999999999999999999999999999999998865221
Q ss_pred CCcc--c-------------ceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 369 YNAK--L-------------GITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 369 ~~~~--~-------------~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
.+.. + -.++|+++++|+.++.+ .++.|++++.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ag 159 (163)
T cd05636 108 DDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPG 159 (163)
T ss_pred CCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCC
Confidence 1100 0 12899999999999888 57888888777664
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=145.72 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=141.3
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| .|+||.. ..||+|++++|+|||+|+++.|...+.+++|+|++++......+.+.. ... .
T Consensus 3 mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~-~ 73 (378)
T PRK09382 3 MSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIK-F 73 (378)
T ss_pred CCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCC-e
Confidence 778899999999 9999953 689999999999999999999999733799999887654333222211 111 1
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++. ...+..++++.+++.+. .+.+++..||.++ ...+..+++...+ .++++...++ .+...|+....
T Consensus 74 v~~v~--gG~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv--~Dtik~~~~tl 144 (378)
T PRK09382 74 VTLVT--GGATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPV--ADTLKRANETV 144 (378)
T ss_pred EEEeC--CCchHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEe--ccCcEEeeeEc
Confidence 34433 33457889999999885 4788999999985 4457888876543 3566777776 67777765555
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
| .+.+..+ +.|+...... +++... +.+.+ +|..+.
T Consensus 145 d--R~~l~~~-QTPQ~f~~~~-----------l~~a~~------------------------------~~~~~-TDd~sl 179 (378)
T PRK09382 145 D--REGLKLI-QTPQLSRTKT-----------LKAAAD------------------------------GRGDF-TDDSSA 179 (378)
T ss_pred C--cccEEEE-ECCCCCCHHH-----------HHHHHh------------------------------CCCCc-ccHHHH
Confidence 5 3355444 6665432211 111110 01112 565555
Q ss_pred ccCC-CceEEEeecceeeecCCccchhhcchHH
Q 015225 239 LAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 239 l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
+... .++..+..+..|..|++|+|+..++..+
T Consensus 180 ~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l 212 (378)
T PRK09382 180 AEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL 212 (378)
T ss_pred HHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 5544 4889998888999999999999987654
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=135.02 Aligned_cols=218 Identities=17% Similarity=0.204 Sum_probs=139.3
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~ 79 (411)
|+++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+...+.+++|+|+++... +.+.+.... .. .
T Consensus 1 ~~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~ 71 (227)
T PRK00155 1 MMMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-P 71 (227)
T ss_pred CCceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-C
Confidence 788999999999 9999953 579999999999999999999998635899999987554 333222211 11 2
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
.+.++.. ..+.+++++.+++.+. ..+.++++.||.++ ...+..+++.+.+.+ +++...+. .+. +..+
T Consensus 72 ~~~~~~~--~~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~--~~~--~~~v- 140 (227)
T PRK00155 72 KVTVVAG--GAERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV--KDT--IKRS- 140 (227)
T ss_pred ceEEeCC--cchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec--ccc--EEEE-
Confidence 3344432 2357899999988773 14688999999985 556899999876553 33344443 222 2222
Q ss_pred EcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhh
Q 015225 158 ADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILS 237 (411)
Q Consensus 158 ~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 237 (411)
+ +++.+..+.+.. ...... +.|.|+.+.+..+.+.... .+++ + +|...
T Consensus 141 -~-~~g~~~~~~~r~---~~~~~~-~p~~f~~~~l~~~~~~~~~------------------------~~~~-~-~d~~~ 188 (227)
T PRK00155 141 -D-DGGGIVDTPDRS---GLWAAQ-TPQGFRIELLREALARALA------------------------EGKT-I-TDDAS 188 (227)
T ss_pred -c-CCCceeecCChH---Hheeee-CCccchHHHHHHHHHHHHh------------------------cCCC-c-CcHHH
Confidence 4 456666553221 111222 4788888776555433211 0111 1 33333
Q ss_pred cccC-CCceEEEeecceeeecCCccchhhcchHH
Q 015225 238 PLAG-KKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 238 ~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
.+.+ +.++..+..+..+.+|+|++|+..+...+
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~ 222 (227)
T PRK00155 189 AVERLGKPVRLVEGRYDNIKITTPEDLALAEAIL 222 (227)
T ss_pred HHHHcCCCeEEEecCcccccCCCHHHHHHHHHHH
Confidence 2322 33677777666678999999998887644
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-15 Score=132.18 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=136.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||. +|+|++++|+|||+|+++.+.+...+++|+|++. .+.+.+++.. ++..+.
T Consensus 1 ~~~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~----~~~~~~ 66 (223)
T cd02513 1 KILAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK----YGAEVP 66 (223)
T ss_pred CeEEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH----hCCCce
Confidence 4679999999 999994 4999999999999999999998633888888764 2344555443 233223
Q ss_pred EeeC----CCCCCChHHHHHHHHHhhcc--CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 83 YLKE----DKPHGSAGGLYYFRDMIMEE--NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 83 ~v~~----~~~~g~~~~l~~~~~~i~~~--~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
+... ....|+.+++..+++.+... ..+.++++.||.++ ...+..+++.+.+.++++++.+.+. .+...++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 144 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF--HRFPWRA 144 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec--CcCcHHh
Confidence 3321 23447788999998877521 13789999999985 5679999999887777777777665 3333333
Q ss_pred EEEEcCCCCceeEEecc-----CCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCcee
Q 015225 155 ELIADPNTKELLHYTEK-----PETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFV 229 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~-----~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (411)
.+..+ ++..+..+.+. .+.+.....++|+|+++++.+.....
T Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~-------------------------------- 191 (223)
T cd02513 145 LGLDD-NGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS-------------------------------- 191 (223)
T ss_pred eeecc-CCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC--------------------------------
Confidence 33322 12122222121 12345566788999999987632110
Q ss_pred eeccchhhcccCCCceEEEeecc-eeeecCCccchhhcch
Q 015225 230 RLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSS 268 (411)
Q Consensus 230 ~l~~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~ 268 (411)
.+ .+++..+.... ...+|++++|+..+..
T Consensus 192 -----~~-----g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 -----FF-----GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred -----cc-----CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 01 34666665554 5789999999877743
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=125.10 Aligned_cols=111 Identities=28% Similarity=0.354 Sum_probs=100.1
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
.+++.+.+++.||+++.|+++|+|++ ...||+++.|.+||+|+ .++||++|+||+++.|.+|+|+++|.||-
T Consensus 21 a~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGm 100 (176)
T COG0663 21 APSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGM 100 (176)
T ss_pred CCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEec
Confidence 46889999999999999999999995 57999999999999998 58999999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCCC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQE 407 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~~ 407 (411)
++.|.+| +.||++|.||+|+.|......|...+..+.|-
T Consensus 101 gA~vldg---------a~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pa 139 (176)
T COG0663 101 GATVLDG---------AVIGDGSIVGAGALVTPGKEIPGGSLVVGSPA 139 (176)
T ss_pred CceEeCC---------cEECCCcEEccCCcccCCcCCCCCeEeecCcc
Confidence 9999999 99999999999999976666666666666554
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-15 Score=131.79 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=139.1
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+...+.+++|+|++++........+... .....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~--~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY--GLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc--ccCCCeEEE
Confidence 58999999 9999975 4799999999999999999999986348999998876553333322111 112234554
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
... .+..++++.+++.+.....+.++++.||.++ ...++.+++.+.+.+. .+...+. .+ +....| ++
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~--~~----~~~~~~-~~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV--TD----TIKRVD-DD 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec--cc----cEEEec-CC
Confidence 432 3567889999988731235789999999985 5568999998865443 2333333 12 123345 57
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 242 (411)
+.+.++.+.. ......++ ++|+.+.+..+....... +.+ + +|....+.+.
T Consensus 144 g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~~~~~------------------------~~~-~-td~~~~~~~~ 193 (218)
T cd02516 144 GVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQASEE------------------------GEE-F-TDDASLVEAA 193 (218)
T ss_pred CceeecCChH---HhhhhcCC-CcccHHHHHHHHHHHHhc------------------------CCC-c-CcHHHHHHHc
Confidence 8888877642 24456777 899988776555432211 111 1 4444433333
Q ss_pred -CceEEEeecceeeecCCccchhh
Q 015225 243 -KQLYTYETMDFWEQIKTPGMSLK 265 (411)
Q Consensus 243 -~~v~~~~~~~~~~~I~t~~d~~~ 265 (411)
.++..+.......+|+||+|+..
T Consensus 194 ~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 194 GGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CCCeEEEecCcccccCCCHHHHhh
Confidence 36777765555569999999854
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=123.18 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=96.0
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEE-----EeeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRL-----ISCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+.+.+.++++||+++.|+++|+|.+ ++.||++|.|+++|.| .+|+|+++|.|++++.+.+++|++++.||.+
T Consensus 11 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 90 (155)
T cd04745 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMN 90 (155)
T ss_pred CCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCC
Confidence 3567778899999999999999985 5899999999999999 5699999999999999999999999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+.+..+ +.|+++++|++++.+ ++..+++++.+-.
T Consensus 91 ~~I~~g---------~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G 125 (155)
T cd04745 91 AVVMDG---------AVIGEESIVGAMAFVKAGTVIPPRSLIAG 125 (155)
T ss_pred CEEeCC---------CEECCCCEECCCCEeCCCCEeCCCCEEec
Confidence 999998 999999999999988 5788888888743
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=129.49 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=97.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.||||||| +|+||++ .||+|++++|+|||+|+++++... ++++|+++++++.+..+.++++. . ..+
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~~----~--~~~ 67 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINSA----Y--KDY 67 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhc----C--cEE
Confidence 689999999 9999964 699999999999999999999986 89999999887777777887652 1 122
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEe
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
.. ....|..+++..+++.+. ..++|++++||+++ ...+..+++.+...+..+..++.+
T Consensus 68 ~~-~~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 68 KN-ASGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred Ee-cCCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 22 455677788888877542 25789999999985 667899999887665555444443
|
At this time this gene appears to be present only in Archea |
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-15 Score=131.68 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=137.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcceEEe
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~~v 84 (411)
||||||| .|+||+. ..||+|++++|+|||+|+++.+.++.++++|+|+++++. +.+...+.. . ..+.++
T Consensus 2 aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~~ 71 (217)
T TIGR00453 2 AVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKIV 71 (217)
T ss_pred EEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEEe
Confidence 7999999 9999975 579999999999999999999998546999999887553 344433322 1 123444
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
... .+..++++.+++.+. ..+.++++.||.++ ...+..+++.+.+. ++++++.+. . .+....| ++
T Consensus 72 ~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~--~----~~v~~~~-~~ 138 (217)
T TIGR00453 72 AGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV--A----DTLKRVE-AD 138 (217)
T ss_pred CCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec--c----ceEEEEc-CC
Confidence 322 245688998888771 25789999999985 55688998877653 333444443 2 2334455 56
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC-
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG- 241 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~- 241 (411)
+.+..+.++. .-....+ .|.|+...+..+.+.... .+++ + +|....+..
T Consensus 139 g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~~~~------------------------~~~~-~-~d~~~~~~~~ 188 (217)
T TIGR00453 139 GFIVETVDRE---GLWAAQT-PQAFRTELLKKALARAKE------------------------EGFE-I-TDDASAVEKL 188 (217)
T ss_pred CceeecCChH---HeEEEeC-CCcccHHHHHHHHHHHHh------------------------cCCC-C-CcHHHHHHHc
Confidence 7777776642 1233344 688998776554432111 0111 2 333333332
Q ss_pred CCceEEEeecceeeecCCccchhhcch
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
..++..+..+....+|++++|+..+..
T Consensus 189 g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 189 GGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred CCCeEEEecCccccccCCHHHHHHHHH
Confidence 347777777666679999999977754
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-15 Score=127.27 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=94.6
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
.+.+.+.++++||+++.|+++|+|.+ +++||++|.||++|+|+ +|+|+++|+|++++.|.+|+|++++.||.
T Consensus 18 ~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ 97 (192)
T TIGR02287 18 HPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGM 97 (192)
T ss_pred CCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECC
Confidence 35677888999999999999999984 58999999999999994 69999999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
++.+..+ ++||+++.|++++.| ++..+.+++.+-
T Consensus 98 ga~I~~g---------~~IG~~s~Vgags~V~~~~~ip~~~l~~ 132 (192)
T TIGR02287 98 NAVVMDG---------AVIGENSIVAASAFVKAGAEMPAQYLVV 132 (192)
T ss_pred CcccCCC---------eEECCCCEEcCCCEECCCCEECCCeEEE
Confidence 9999888 999999999999888 566777777664
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=126.41 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=85.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
..+++.++++||+++.|+++|.|.++++||++|.|+++|.|.++.|+++|.|++++.+.+++|++++.|++++++..+
T Consensus 8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~-- 85 (193)
T cd03353 8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPG-- 85 (193)
T ss_pred CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCc--
Confidence 467778899999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred CCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 369 YNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
++|++++.|+.++.+.++.+++++.+
T Consensus 86 -------~~Ig~~~~Ig~~~~i~~s~ig~~~~i 111 (193)
T cd03353 86 -------TVLGEGVHIGNFVEIKKSTIGEGSKA 111 (193)
T ss_pred -------cEECCCCEECCcEEEecceEcCCCEe
Confidence 66666666666655554444444433
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=122.15 Aligned_cols=93 Identities=25% Similarity=0.273 Sum_probs=85.8
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
..++.+.++++||+++.|++++.|.++++||++|.|+++|.|. +++|+++|.|++++.|.+|+|++++.|++++.+.+
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~- 87 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGD- 87 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEec-
Confidence 3567888999999999999999999999999999999999998 69999999999999999999999999999998876
Q ss_pred CcCCcccceeEECCCCEECCCcEE
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++|++++.|++++.+
T Consensus 88 ---------siIg~~~~I~~~~~i 102 (163)
T cd05636 88 ---------SVLGENVNLGAGTIT 102 (163)
T ss_pred ---------CEECCCCEECCCcEE
Confidence 788888888888765
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=129.31 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=97.3
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----------eeEECCCCEECCCcEEEeeEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----------SCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
.+++.+.++++||+++.|+++++|.++ ++||++|.|+++|.|+ +++||++|+||++|.|.+|+|++
T Consensus 69 ~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd 148 (246)
T PLN02472 69 APNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEP 148 (246)
T ss_pred CCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcC
Confidence 457788889999999999999999975 8999999999999995 59999999999999999999999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+|.||.++.|..+ ++|++++.|++++.| .+..+.+++.+..
T Consensus 149 ~v~IG~~svI~~g---------avIg~~~~Ig~gsvV~~g~~Ip~g~~~~G 190 (246)
T PLN02472 149 ECIIGQHSILMEG---------SLVETHSILEAGSVLPPGRRIPTGELWAG 190 (246)
T ss_pred CCEECCCCEECCC---------CEECCCCEECCCCEECCCCEeCCCCEEEe
Confidence 9999999999998 999999999999988 5788888888763
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=130.05 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=96.0
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----------eeEECCCCEECCCcEEEeeEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----------SCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
.+.+.+.+++.||+++.|+++|+|.+. ++||++|.|+++|+|. +|+||++|+|+++|.|.+++|++
T Consensus 62 ~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd 141 (269)
T PLN02296 62 APSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVED 141 (269)
T ss_pred CCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECC
Confidence 356778888999999999999999975 4999999999999995 68999999999999999999999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+|.||.++.|..+ ++|++++.|+++++| ++..|.+++++-.
T Consensus 142 ~v~IG~ga~I~~g---------v~Ig~~a~IgagSvV~~~~~I~~~~~~~G 183 (269)
T PLN02296 142 EAFVGMGATLLDG---------VVVEKHAMVAAGALVRQNTRIPSGEVWAG 183 (269)
T ss_pred CcEECCCcEECCC---------eEECCCCEECCCCEEecCCEeCCCeEEec
Confidence 9999999999998 999999999999999 5677888887643
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-15 Score=125.47 Aligned_cols=120 Identities=23% Similarity=0.387 Sum_probs=95.0
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| +|+||+ .||+|++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++.. .+ +.++.
T Consensus 1 ~vILa~G--~s~Rmg-----~~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~--~~~~~~~~~----~~--~~~v~ 64 (160)
T PF12804_consen 1 AVILAAG--KSSRMG-----GPKALLPIGGKPLIERVLEALREA-GVDDIVVVTGE--EEIYEYLER----YG--IKVVV 64 (160)
T ss_dssp EEEEESS--SCGGGT-----SCGGGSEETTEEHHHHHHHHHHHH-TESEEEEEEST--HHHHHHHTT----TT--SEEEE
T ss_pred CEEECCc--CcccCC-----CCccceeECCccHHHHHHHHhhcc-CCceEEEecCh--HHHHHHHhc----cC--ceEEE
Confidence 7999999 999995 399999999999999999999997 89999999986 334444433 23 45444
Q ss_pred C-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEE
Q 015225 86 E-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVI 143 (411)
Q Consensus 86 ~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~ 143 (411)
. ....|+.++++.++..+. ..++|++++||+++ ...+..+++.+.+.+.+++++..
T Consensus 65 ~~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 65 DPEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp -STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 3 335799999999999872 26999999999975 55689999998777777655444
|
... |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=120.54 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEEe-----------eEECCCCEECCCcEEEeeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLIS-----------CIVLDDVEIKENAVVLNSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~s~i~~~ 354 (411)
+.+.+.++++||+++.|+++|.|. ++++||++|.|+++|.|.+ +.||++|.+..++++.+++||++
T Consensus 10 ~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~ 89 (164)
T cd04646 10 QESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN 89 (164)
T ss_pred CCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence 356778889999999999999995 5689999999999999975 46899999999999999999999
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
|.||.++.|.++ +.||++++|+++++| ++..+++++++..+
T Consensus 90 ~~Ig~~a~I~~g---------v~Ig~~~~IgagsvV~~~~~i~~~~vi~g~ 131 (164)
T cd04646 90 NVFESKSFVGKN---------VIITDGCIIGAGCKLPSSEILPENTVIYGA 131 (164)
T ss_pred CEEeCCCEECCC---------CEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence 999999999998 999999999999988 46677777776553
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=125.16 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=84.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|.+|||||| .|+||. ..||+|++++|+|||+|+++.+. . ++++|+|+++...+.+ .. .+.
T Consensus 1 ~~~~~~vILA~G--~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~-~~~~i~vv~~~~~~~~----~~----~~~- 63 (193)
T PRK00317 1 MPPITGVILAGG--RSRRMG----GVDKGLQELNGKPLIQHVIERLA-P-QVDEIVINANRNLARY----AA----FGL- 63 (193)
T ss_pred CCCceEEEEcCC--CcccCC----CCCCceeEECCEEHHHHHHHHHh-h-hCCEEEEECCCChHHH----Hh----cCC-
Confidence 889999999999 999994 35999999999999999999998 4 7999999887543322 11 222
Q ss_pred eEEeeC--CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHH
Q 015225 81 VRYLKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 81 i~~v~~--~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~ 132 (411)
.++.. ....|+.++++.+++..+ .+.+++++||.++ ...+..+++.+.
T Consensus 64 -~~v~~~~~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 64 -PVIPDSLADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred -cEEeCCCCCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 23332 223688899998888653 5789999999985 445777777654
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-15 Score=142.26 Aligned_cols=96 Identities=30% Similarity=0.428 Sum_probs=89.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
++.++.++.||-++.||.++.|. |++||.||.||.+|+|.+|.|+++|+||+||.|.+|+||++++|+++|.+..|
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g--- 402 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPG--- 402 (673)
T ss_pred hccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCC---
Confidence 57788899999999999999998 99999999999999999999999999999999999999999999999999998
Q ss_pred CcccceeEECCCCEECCCcEE-cceEE
Q 015225 370 NAKLGITILGEAVTVEDEVVV-INSIV 395 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-~~~~i 395 (411)
||||.++++|++.++ +++.|
T Consensus 403 ------~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 403 ------SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ------cEEeeeeEeCCCccccccccc
Confidence 999999999988777 45555
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=123.40 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=87.3
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++..+.+.+.+.. .+ .+.++.
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~---~~--~v~~v~ 68 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLAN---HS--NITLVH 68 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhcc---CC--CeEEEE
Confidence 7999999 9999964 99999999999999999999986 8999999888765443333221 22 344444
Q ss_pred C-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCee
Q 015225 86 E-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMG 138 (411)
Q Consensus 86 ~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~ 138 (411)
. ....|+.++++.+++.. ...+.+++++||+++ ...++.+++.+.+....+
T Consensus 69 ~~~~~~g~~~si~~~l~~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 69 NPQYAEGQSSSIKLGLELP--VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred CcChhcCHHHHHHHHhcCC--CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 3 23458889999888721 125789999999975 456888888776555443
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=121.59 Aligned_cols=203 Identities=15% Similarity=0.057 Sum_probs=139.9
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
|||||+| .|+||. .|.+++++|+|||.|+++.+.+...+++|+|.+.. +.+.+.... ++.++.+..
T Consensus 2 aiIpArG--~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~----~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKS----YGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHH----cCCEeEEeC
Confidence 7999999 999994 59999999999999999999997557888776643 335554443 455554432
Q ss_pred C----CCCCCChHHHHHHHHHhhc-cCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 86 E----DKPHGSAGGLYYFRDMIME-ENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 86 ~----~~~~g~~~~l~~~~~~i~~-~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
. ....++.++++.+++.+.. ...+.++++.+|.++ ..++..+++.+.+.+++..+.+.+. ..+..+.. ..
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~--~~~~~~~~-~~ 144 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSF--AFPIQRAF-KL 144 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeecc--CCChHHhe-EE
Confidence 1 3356788999999988742 224779999999996 5679999999988778888777775 33233332 33
Q ss_pred cCCCCceeEEecc------CCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeec
Q 015225 159 DPNTKELLHYTEK------PETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLD 232 (411)
Q Consensus 159 d~~~~~v~~~~e~------~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (411)
+ +++++..+... .+.+.....+.++|+++++.+..-.
T Consensus 145 ~-~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~------------------------------------ 187 (222)
T TIGR03584 145 K-ENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG------------------------------------ 187 (222)
T ss_pred C-CCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC------------------------------------
Confidence 3 35555544321 1223344568899999998763211
Q ss_pred cchhhcccCCCceEEEeecc-eeeecCCccchhhcch
Q 015225 233 QDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSS 268 (411)
Q Consensus 233 ~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~ 268 (411)
..+ .+++..|.++. ...||++++|+..|..
T Consensus 188 -~~~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~ 218 (222)
T TIGR03584 188 -PIF-----SPHSIPIVLPRHLVQDIDTLEDWERAEL 218 (222)
T ss_pred -Ccc-----CCCcEEEEeCccceeCCCCHHHHHHHHH
Confidence 111 34556666555 5799999999988854
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=122.39 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=89.0
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCc------
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNA------ 371 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~------ 371 (411)
.+++++.|+++|+|. ++.||+++.||++|+|.+++||++|+|+.+|.+.+++||++|.|++++++..+.++..
T Consensus 4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~ 82 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence 467788888888886 6899999999999999999999999999999999999999999999999986533110
Q ss_pred ----------------------ccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 372 ----------------------KLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 372 ----------------------~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
..+.++||++++||.++.| .+++|++|++|.+++|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~ 149 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYT 149 (204)
T ss_pred cccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCc
Confidence 1134777777777777766 5677777888887777643
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-14 Score=121.87 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+++.+.+++.||+++.|+++|+|+++ ++||++|.||++|+|+ +|+|+++|.||+++.+.+++|+++|.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 45666777888888888888888753 5888888888888886 478899999999988888889999999998
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.+..+ ++||+++.|++|++| ++..+.+++++-
T Consensus 101 a~V~~g---------~~IG~~s~Vgags~V~~~~~ip~~~~~~ 134 (196)
T PRK13627 101 SVIMDG---------AVIGEESIVAAMSFVKAGFQGEKRQLLM 134 (196)
T ss_pred CccCCC---------cEECCCCEEcCCCEEeCCcCcCCCcEEE
Confidence 888887 888888888888887 445556665543
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=103.70 Aligned_cols=79 Identities=49% Similarity=0.958 Sum_probs=73.3
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEE
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITIL 378 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i 378 (411)
+++++.|++++.|+++++||++|.||++|+|.+|+|+++|.|++++.+.+|++++++.+++++++..+ +++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~---------~~i 72 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENV---------TVL 72 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecC---------EEE
Confidence 57888888899998899999999999999999999999999999999999999999999999999887 888
Q ss_pred CCCCEECC
Q 015225 379 GEAVTVED 386 (411)
Q Consensus 379 ~~~~~i~~ 386 (411)
+++++|+.
T Consensus 73 g~~~~i~~ 80 (80)
T cd05824 73 GDDVTIKD 80 (80)
T ss_pred CCceEECC
Confidence 98888863
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=115.26 Aligned_cols=104 Identities=23% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-----eEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-----CIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+.+.+.+++.||+++.|+++|.|.+. ++||++|.|+++|.|.. ++|++++.|+++|.+.+++|++++.|+.+
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 90 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMG 90 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCC
Confidence 45667788899999999999999865 69999999999999985 89999999999999999999999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEE
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVL 401 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v 401 (411)
+.+..+ ++|++++++++++.+ .+..+++++++
T Consensus 91 ~~i~~~---------~~Ig~~~~vg~~~~v~~g~~i~~~~v~ 123 (154)
T cd04650 91 AILLNG---------AKIGDHVIIGAGAVVTPGKEIPDYSLV 123 (154)
T ss_pred CEEeCC---------CEECCCCEECCCCEECCCcEeCCCCEE
Confidence 999887 999999999999888 45777777775
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=125.80 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=15.3
Q ss_pred ceeEECCCCEECCCcEE-cc----eEEcCCCEEcC
Q 015225 374 GITILGEAVTVEDEVVV-IN----SIVLPNKVLNV 403 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v-~~----~~i~~~~~v~~ 403 (411)
|.++|++++.||+++.| .+ ++|+.++.+..
T Consensus 201 g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN 235 (338)
T COG1044 201 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN 235 (338)
T ss_pred ceEEECCceEEcccceeccccccCceecCCcEEcc
Confidence 45555555555555555 12 44444444443
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=126.09 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=63.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-------- 348 (411)
.+.+.++++||+++.|+++|+|.+++.||++|.|+++++|. +++||++|.|+++|+|..
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~ 102 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGV 102 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCc
Confidence 34444455555555555555555555556666666555554 455666666666665542
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
++||+++.|++++.|..+.. +...+ +.++||++++|+.++.| .+++|+.++.|..++++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~ 177 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPP 177 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCC
Confidence 44555555544444432100 01111 22777777777777666 46667777777766654
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=127.15 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=76.2
Q ss_pred CcEEcCCcEECCCCEECCCCEECC------------CcEECCCcEECCCcEEE--------eeEECCCCEECCCcEEE-e
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP------------NVSISANVRVGAGVRLI--------SCIVLDDVEIKENAVVL-N 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~------------~~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~-~ 348 (411)
.+.+.+++.||+++.|+++++|++ ++.||++|.|+++|+|. +++||++|+|+++++|. +
T Consensus 40 ~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~ 119 (254)
T TIGR01852 40 HVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHD 119 (254)
T ss_pred CCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccC
Confidence 445555666666666666666652 46677777777777775 35677777777777774 6
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
++|++++.|+.++.+..+ ++||++++|+.++.| .+++|+.++.|..++|+.
T Consensus 120 ~~Ig~~~~i~~~~~i~~~---------~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~ 177 (254)
T TIGR01852 120 CVVGNHVILANNATLAGH---------VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPY 177 (254)
T ss_pred CEECCCCEECCCCEECCC---------cEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCC
Confidence 777777777777777666 788888888877766 467777777777777754
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=119.54 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=84.3
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~ 366 (411)
...++++++|+++|.|.++++||++|.|+++|+|.. .+|+++|.|+++|.|. +++|++++.||.++.+.+
T Consensus 10 ~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g- 88 (196)
T PRK13627 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG- 88 (196)
T ss_pred CCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee-
Confidence 346788888888888888899999999999999975 5899999999999996 478999999999988876
Q ss_pred CcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCC
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSV 405 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~ 405 (411)
++||+++.||.++++ .+|+|++|+.|++++
T Consensus 89 ---------~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 89 ---------CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred ---------EEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 788888888877655 578888888888877
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=103.63 Aligned_cols=79 Identities=24% Similarity=0.506 Sum_probs=64.0
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEE
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITIL 378 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i 378 (411)
||++++|++++.|. +++||++|.|+++|+|.+++|+++|.|+++|.|.+|++++++.|++++++.+ |+|
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~----------~ii 70 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD----------CLV 70 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc----------CEE
Confidence 67777788888776 6888888888888888888888888888888888888888888888888876 788
Q ss_pred CCCCEECCCc
Q 015225 379 GEAVTVEDEV 388 (411)
Q Consensus 379 ~~~~~i~~~~ 388 (411)
++++.|++++
T Consensus 71 ~~~~~i~~~~ 80 (81)
T cd04652 71 GSGYRVEAGT 80 (81)
T ss_pred CCCcEeCCCC
Confidence 8888877664
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=103.04 Aligned_cols=79 Identities=38% Similarity=0.566 Sum_probs=69.6
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
||++++.|++++.|.+ ++||++|.|++++.|.+++|+++|+|++++.+.+|++++++.|++++++.++ ++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~---------~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNL---------CI 70 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCC---------eE
Confidence 4788888888888885 9999999999999999999999999999999999999999999999888887 88
Q ss_pred ECCCCEECC
Q 015225 378 LGEAVTVED 386 (411)
Q Consensus 378 i~~~~~i~~ 386 (411)
++++++|++
T Consensus 71 ig~~~~i~~ 79 (79)
T cd03356 71 IGDDVVVED 79 (79)
T ss_pred ECCCeEECc
Confidence 888887763
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.6e-14 Score=127.88 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=71.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-------- 348 (411)
.+.+.++++||+++.|+++++|.++++||++|.|+++++|. .++||++|.|+++|+|.+
T Consensus 26 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~ 105 (262)
T PRK05289 26 FCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGV 105 (262)
T ss_pred CeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCe
Confidence 44445555555555555566666666666666666666664 366666666666666653
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||+++.|+.++.|..+.. +...+ +.++||++|+|+.++.| .+++|++|++|++++|+..
T Consensus 106 t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~ 182 (262)
T PRK05289 106 TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYV 182 (262)
T ss_pred eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCe
Confidence 24555555554444432100 01111 23677777777766655 5788888999999998754
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=125.98 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=49.1
Q ss_pred cEECCCcEECCCcEE-EeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc
Q 015225 315 VSISANVRVGAGVRL-ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 315 ~~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 392 (411)
++||++|.|++++.| ++|+||++|.|+.++.+. +++|+++|.|+.++.|..+ +.||+++.|+.++.|.+
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~---------v~Ig~~~~Ig~~s~V~~ 173 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF---------CRIGRHAMVGGGSGVVQ 173 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC---------cEECCCCEECcCCEEee
Confidence 455555555555555 345555555555555555 5666666666666666666 88888899988888855
Q ss_pred eEEcCCCEE
Q 015225 393 SIVLPNKVL 401 (411)
Q Consensus 393 ~~i~~~~~v 401 (411)
.+ .+++++
T Consensus 174 ~i-~~~~~~ 181 (254)
T cd03351 174 DV-PPYVIA 181 (254)
T ss_pred ec-CCCeEE
Confidence 43 445554
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=115.48 Aligned_cols=95 Identities=26% Similarity=0.398 Sum_probs=78.9
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEE-----EeeEECCCCEECCCcEEecCCcC
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVV-----LNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i-----~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
|++++.|+++++|.+++.||++|.|+++|+|.. +.||++|.|+++|+| .+++|++++.|+.++.+.+
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~---- 78 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG---- 78 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC----
Confidence 577788888888888999999999999999984 899999999999999 4689999999999988776
Q ss_pred CcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 370 NAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
++||++++|+.++.| .+|+|++++.|..
T Consensus 79 ------~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 79 ------CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred ------CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 677777777776655 4677777777766
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=118.64 Aligned_cols=106 Identities=24% Similarity=0.437 Sum_probs=83.0
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+... +++|+|+++...+. + . ..+ +.+
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~---~-~----~~~--~~~ 61 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER---Y-A----LLG--VPV 61 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH---H-h----hcC--CcE
Confidence 468999999 9999964 99999999999999999999984 88999998866533 1 1 122 334
Q ss_pred eeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHH
Q 015225 84 LKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAH 131 (411)
Q Consensus 84 v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~ 131 (411)
+.. ....|..++++.+++.+. .+.+++++||+++ ...+..+++.+
T Consensus 62 v~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 62 IPDEPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred eeCCCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 432 345689999999998775 5889999999985 44577777765
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=124.25 Aligned_cols=109 Identities=23% Similarity=0.342 Sum_probs=63.5
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEE------CCCcEEE-eeEECCCCEECCCcEE------------------
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRV------GAGVRLI-SCIVLDDVEIKENAVV------------------ 346 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i------~~~~~i~-~~~i~~~~~i~~~~~i------------------ 346 (411)
.++++++|+++++|+++++|.++++||++|+| .+++.|. ++.||++|.|+.+++|
T Consensus 119 ~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~ 198 (338)
T COG1044 119 SIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIP 198 (338)
T ss_pred ccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcc
Confidence 33444444444444444444444444444444 4444444 3666666666666655
Q ss_pred --EeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCC
Q 015225 347 --LNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSV 405 (411)
Q Consensus 347 --~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~ 405 (411)
.+.+|+++|.||.++.|..+ .++.++|+++++|...++| ++|.||.++.|...+
T Consensus 199 q~g~V~Igd~VeIGanT~Idrg-----a~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~v 255 (338)
T COG1044 199 QIGRVIIGDDVEIGANTTIDRG-----ALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQV 255 (338)
T ss_pred eeceEEECCceEEcccceeccc-----cccCceecCCcEEcceeEEccccEECCCcEEeccc
Confidence 23566666666666666553 4455788888888888888 688888888776643
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=111.44 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=82.5
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------eeEECCCCEECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL---------NSIIGWKSSLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~s~i~~~~~ig~ 359 (411)
.+++.++++|++++.|.+++.|..++.||+++.|+.++.|. +++|+++|.|+.++.+. .++|++++.|++
T Consensus 7 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~ 86 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGA 86 (139)
T ss_pred CcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECC
Confidence 45666667777777777777777777777777777777775 67888888888888885 368888888888
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEE---cCCCEEcCCCCCc
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIV---LPNKVLNVSVQEE 408 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i---~~~~~v~~~~~~~ 408 (411)
++.+..+ +.|++++.|++++.| ++..| ++|++|.+++|+.
T Consensus 87 ~a~I~~g---------v~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~ 130 (139)
T cd03350 87 NCEVVEG---------VIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPG 130 (139)
T ss_pred CCEECCC---------CEECCCCEEcCCCEEcCCeEecccCcccEEecccCCC
Confidence 8888777 888888888888777 22222 6788888888876
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=114.81 Aligned_cols=105 Identities=27% Similarity=0.349 Sum_probs=89.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC----CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe-eEECCCCEEC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP----NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN-SIIGWKSSLG 358 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-s~i~~~~~ig 358 (411)
+++.+.+++.+|+++.|+++++|.. ++.||++|.|++++.|. ++.||++|.|+.++.|.+ ++|+++|.||
T Consensus 13 ~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig 92 (167)
T cd00710 13 PTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIG 92 (167)
T ss_pred CCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEEC
Confidence 4667777888888888988888875 47899999999999995 688999999999999994 9999999999
Q ss_pred CCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 359 RWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 359 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
.++.|.+ +.||+++.|+.++.|.++.+++++.++.
T Consensus 93 ~~~~I~~----------~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 93 FRSVVFN----------AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred CCCEEEC----------CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 9999986 8999999999999887666666666643
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=115.09 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=78.1
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEee-----------EECCCCEECCCcEE
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLNS-----------IIGWKSSLGRWARV 363 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~s-----------~i~~~~~ig~~~~i 363 (411)
|++++.|.+++.|.+++.||++|.|+++|.|. .++||++|.|+++|+|.++ +||+++.+..++.+
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 67888888888888899999999999999995 4699999999999999854 46777777666666
Q ss_pred ecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCC--CCCc
Q 015225 364 QGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVS--VQEE 408 (411)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~--~~~~ 408 (411)
.+ ++||++|+|+.++.| .+|+|+++++|.++ +|+.
T Consensus 82 ~~----------~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~ 125 (164)
T cd04646 82 EA----------LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPEN 125 (164)
T ss_pred Ee----------eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCC
Confidence 55 677777766666655 46777778777776 5554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-13 Score=120.33 Aligned_cols=218 Identities=13% Similarity=0.138 Sum_probs=134.5
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i 81 (411)
++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+...+.+++|+|+++... ..+.+++..+. .....+
T Consensus 2 ~~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~-~~~~~~ 75 (230)
T PRK13385 2 NYELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLN-VADQRV 75 (230)
T ss_pred ceEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcC-cCCCce
Confidence 4789999999 9999964 579999999999999999999987646899999887543 33333443311 001134
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
+++. ...+..++++.+++.+. ..+.++++.||.++ ...+..+++.+.+.++. +...+. .+ .....+
T Consensus 76 ~~v~--~g~~r~~sv~~gl~~~~--~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~--~d----ti~~~~ 143 (230)
T PRK13385 76 EVVK--GGTERQESVAAGLDRIG--NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEV--KD----TVKRVK 143 (230)
T ss_pred EEcC--CCchHHHHHHHHHHhcc--CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEec--cc----eEEEEc
Confidence 4443 22345689999988774 13567888999996 45588998887665433 333333 21 111222
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
++.+....++ + .-+.--+.|.|+.+.+....+.... +.+.+ +|....+
T Consensus 144 --~~~~~~~i~r--~--~~~~~qtpq~f~~~~l~~~~~~~~~-------------------------~~~~~-td~~~~~ 191 (230)
T PRK13385 144 --DKQVIETVDR--N--ELWQGQTPQAFELKILQKAHRLASE-------------------------QQFLG-TDEASLV 191 (230)
T ss_pred --CCeeEeccCH--H--HHhhhcCCceeeHHHHHHHHHHHHh-------------------------cCCCc-CcHHHHH
Confidence 3444443321 1 1122235788887655433332100 01112 3433333
Q ss_pred c-CCCceEEEeecceeeecCCccchhhcchHH
Q 015225 240 A-GKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 240 ~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
. ...++..+..+.....|++|+|+..+...+
T Consensus 192 ~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l 223 (230)
T PRK13385 192 ERSPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223 (230)
T ss_pred HHcCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence 3 345788887777788999999999887554
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=112.53 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=162.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++..+||+|.= .+|||.. |||-.|+|+|||.|+.++..++ +.++++|.+. .+.+.+.+.+ +|.+
T Consensus 1 ~~~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s-~~~rvvVATD--de~I~~av~~----~G~~ 65 (247)
T COG1212 1 TMKFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKS-GADRVVVATD--DERIAEAVQA----FGGE 65 (247)
T ss_pred CCceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHc-CCCeEEEEcC--CHHHHHHHHH----hCCE
Confidence 577899999998 8999976 9999999999999999999996 9999999885 3457777765 4666
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCc-cc--ccceeE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSA-ES--AHQFGE 155 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~g~ 155 (411)
+.....+...||... ..+.+.+...+++.++=+.||.++ ...+..+++...++.+++..+..+... ++ .+..-.
T Consensus 66 avmT~~~h~SGTdR~-~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VK 144 (247)
T COG1212 66 AVMTSKDHQSGTDRL-AEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVK 144 (247)
T ss_pred EEecCCCCCCccHHH-HHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEE
Confidence 666666666676554 444555543345667778999997 456888888887777776555555421 11 122334
Q ss_pred EEEcCCCCceeEEeccCCCc-------ccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCce
Q 015225 156 LIADPNTKELLHYTEKPETF-------VSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDF 228 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~~~~-------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (411)
++.| ..++.+.|+..|-.. ...+.-.|+|.|+++++..+-.+.+...++.
T Consensus 145 vV~d-~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~---------------------- 201 (247)
T COG1212 145 VVLD-KEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKI---------------------- 201 (247)
T ss_pred EEEc-CCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHH----------------------
Confidence 6688 778999998875211 2456678999999999988776654322110
Q ss_pred eeeccchhhcccCCCceEEEeeccee-eecCCccchhhcchHHH
Q 015225 229 VRLDQDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 229 ~~l~~d~l~~l~~~~~v~~~~~~~~~-~~I~t~~d~~~a~~~~l 271 (411)
.+| +-|+.|-.+.++.+...+... .-+||++|+.++.+.+.
T Consensus 202 E~L--EQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 202 ESL--EQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred HHH--HHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 111 234555566788888877644 88999999998876554
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=122.97 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=27.3
Q ss_pred ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 374 GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+.+.||++++|+.++.| .+++|++++.|++++|+-.
T Consensus 136 g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~ 178 (255)
T PRK12461 136 GHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYC 178 (255)
T ss_pred CceEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCe
Confidence 34777788877777766 5678888888999988754
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=123.10 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=63.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEE--------e
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVL--------N 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~--------~ 348 (411)
.+.+.+++.||++++|+++|.|.+++.||++|+|+++++|. +++||++|.|+++|+|. .
T Consensus 22 ~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~ 101 (254)
T TIGR01852 22 FCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGV 101 (254)
T ss_pred CCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCc
Confidence 44455555555666666666666666677777777777775 46777777777777775 3
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEE
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVL 401 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v 401 (411)
++||+++.|+.++.+..+ |.||+++.|++++.+ .+++|++++.+
T Consensus 102 ~~IG~~~~I~~~~~I~~~---------~~Ig~~~~i~~~~~i~~~~~Igd~~~I 146 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHD---------CVVGNHVILANNATLAGHVEVGDYAII 146 (254)
T ss_pred EEECCCCEECCCCEEccC---------CEECCCCEECCCCEECCCcEECCCcEE
Confidence 466666666666666544 666666666666655 34444444443
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=113.84 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=89.8
Q ss_pred CcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-------------eEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 296 DVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-------------CIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
++++|+++.|+++|+|.++ +.||++|.|+++|+|.. ++|++++.|++++.+.+++|++++.||+
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 6788999999999999865 69999999999999974 5799999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
++.++.+ ++|++++.|+++++| .++.++|++++..
T Consensus 101 ~~~Ig~~---------~~I~~~~~i~~g~~V~~~~~i~~~~vv~g 136 (161)
T cd03359 101 NCVIGRR---------CIIKDCVKILDGTVVPPDTVIPPYSVVSG 136 (161)
T ss_pred CCEEcCC---------CEECCCcEECCCCEECCCCEeCCCCEEec
Confidence 9999998 999999999999988 6888998888864
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=118.52 Aligned_cols=99 Identities=27% Similarity=0.395 Sum_probs=82.8
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEE-----EeeEECCCCEECCCcEEecC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVV-----LNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~s~i~~~~~ig~~~~i~~~ 366 (411)
...|+++++|++++.|.++++||++|.|+++|+|. ..+||++|.|+++|+| .+|+|++++.|++++.|.+
T Consensus 8 ~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~- 86 (192)
T TIGR02287 8 TPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG- 86 (192)
T ss_pred CCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC-
Confidence 34678899999999998899999999999999997 4799999999999999 3689999999999998877
Q ss_pred CcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCC
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVS 404 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~ 404 (411)
|+|++++.||.++.+ .+|+|++|+.|..+
T Consensus 87 ---------siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 87 ---------CIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ---------CEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 788888777776655 46777777777763
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=119.31 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=90.2
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+... ++++|+|++++......+++.. ++ +.+
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~--~~~ 66 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAG----LP--VVV 66 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcC----CC--eEE
Confidence 468999999 9999976 99999999999999999999997 8999999987665444443322 23 333
Q ss_pred ee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 84 LK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 84 v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+. +....|+.++++.+++.+.. ..+++++++||+++ ...+..+++.+.+....
T Consensus 67 ~~~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 67 VINPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred EeCCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33 33446899999999988742 35789999999975 55678888776544443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=122.77 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC-----CcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEe---------eEECC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP-----NVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLN---------SIIGW 353 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------s~i~~ 353 (411)
.++++.+++++++++.|+++++|.+ +++||++|+|+.++.|.+ +.||++|.|+.++.|.+ ++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 4677888888888888888888873 344555555555555543 46677777777766653 78999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcC---CCEEcCCCCCc
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLP---NKVLNVSVQEE 408 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~---~~~v~~~~~~~ 408 (411)
+|.||.++.|..+ ++||++++|++++.| +++.|++ |+++.+.+|+.
T Consensus 182 nv~IGa~s~I~~G---------v~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~ 231 (272)
T PRK11830 182 NCFIGARSEVVEG---------VIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAG 231 (272)
T ss_pred CCEECCCCEEcCC---------CEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCC
Confidence 9999999999877 999999999999988 6788884 56666666654
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-13 Score=111.87 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=92.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-----eEECCCCEECCCcEEEeeEECCCCEECCCc
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-----CIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~ 361 (411)
.+.+.+++++|+++.|++++.|.++ ++||+++.|+++|+|.. ++|+++|.|+.+|.+.+++|++++.|+.++
T Consensus 11 ~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 90 (153)
T cd04645 11 NATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGA 90 (153)
T ss_pred CCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCC
Confidence 5677778899999999999998854 69999999999999997 599999999999999999999999999999
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
.+..+ ++|+++++|++++.+ ++..+++++.+.
T Consensus 91 ~v~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~~~ 123 (153)
T cd04645 91 IILDG---------AVIGKGSIVAAGSLVPPGKVIPPGSLVA 123 (153)
T ss_pred EEcCC---------CEECCCCEECCCCEECCCCEeCCCCEEe
Confidence 99977 999999999999888 466777776664
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=100.99 Aligned_cols=80 Identities=11% Similarity=0.225 Sum_probs=75.3
Q ss_pred EECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEE
Q 015225 316 SISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIV 395 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i 395 (411)
+||++++|++++.|.++.|+++|.|+++|.|.+++|++++.|+.++++.+ +++++++.|++++.+.+|++
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~----------svi~~~~~i~~~~~v~~~ii 70 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN----------CIIGNGAVIGEKCKLKDCLV 70 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec----------cEEeCCCEECCCCEEccCEE
Confidence 37889999999999999999999999999999999999999999999987 99999999999999999999
Q ss_pred cCCCEEcCCC
Q 015225 396 LPNKVLNVSV 405 (411)
Q Consensus 396 ~~~~~v~~~~ 405 (411)
++++.|..+.
T Consensus 71 ~~~~~i~~~~ 80 (81)
T cd04652 71 GSGYRVEAGT 80 (81)
T ss_pred CCCcEeCCCC
Confidence 9999998763
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-13 Score=125.91 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=43.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
.+.+.+.+.|++++.|+++++|++++.||++|+|+++|.|. +++||++|.|+.+++|. +++||++|.|++++.|+
T Consensus 97 ~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 97 TAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred CCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 44555555555555555555555555555555555555553 55566666666666665 56666666666666664
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=124.52 Aligned_cols=107 Identities=25% Similarity=0.347 Sum_probs=57.5
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE--------------------eeE
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL--------------------NSI 350 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~s~ 350 (411)
.+.+++.||+++.|+++|+|++++.||++|.|+++|+|. ++.|+++|+|+++|+|. +++
T Consensus 126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 333334444444444444444444455555555555554 24466666666666663 356
Q ss_pred ECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 351 IGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 351 i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
|++++.||+++.|..+ ..+.++||++++|+..+.| ++|.||+++.+..
T Consensus 206 Ig~~v~IGa~~~I~~~-----~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~ 254 (343)
T PRK00892 206 IGDDVEIGANTTIDRG-----ALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAA 254 (343)
T ss_pred ECCCcEECCCcEEecC-----ccccceeCCCCEEeCCeEEccCCEECCCcEEee
Confidence 6666666666666432 1223666666666666666 4566666555543
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=125.07 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=77.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------------------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL--------------------- 347 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------- 347 (411)
.+.+.++++||+++.|+++++|+++++||++|.|+++|+|. +++||++|.|+++|+|.
T Consensus 115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G 194 (324)
T TIGR01853 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG 194 (324)
T ss_pred CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence 34444455555555555666666667777777777777776 78899999999988884
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
+++|+++|.||+++.|..+ +.+.++||++++|+..+.| .+|.||+++.+...
T Consensus 195 ~vvIgd~v~IGa~~~I~r~-----~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~ 247 (324)
T TIGR01853 195 RVIIEDDVEIGANTTIDRG-----AFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQ 247 (324)
T ss_pred eEEECCCcEECCCCEEecC-----CcCcceecCCcEEccCcEECCCCEECCCcEECCc
Confidence 4788889999998888543 2333777777777777777 56777777666543
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=121.33 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------eeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------NSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~s~i~~~ 354 (411)
+.+.+.+.+.|++++.|+++|.|++++.||++|.|+++++|. +++||++|.|++++.|. .++||++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~ 86 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN 86 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence 356777788888888888888888888888888888888887 69999999999999997 4889999
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+.|++++.|..+... .-+.+.||+++.|+.++.| .+|+|+.+.++..
T Consensus 87 ~~I~e~~~I~~~~~~--~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~ 134 (262)
T PRK05289 87 NTIREFVTINRGTVQ--GGGVTRIGDNNLLMAYVHVAHDCVVGNHVILAN 134 (262)
T ss_pred CEECCCeEEeccccc--CCCeeEECCceEECCCCEECCeEEECCCeEECC
Confidence 999999999764210 0112466666666666666 3555555555543
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=115.30 Aligned_cols=120 Identities=12% Similarity=0.230 Sum_probs=73.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec---
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG--- 365 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~--- 365 (411)
.+.+.+++.||+++.|+++|.|. ++.||++|.|++++.|.+++|++++.|+.++.|. +++|++++.|+.++.+.+
T Consensus 27 ~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 27 GVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 44555566666666666666665 3467777777777777777777766666666665 555555555544433211
Q ss_pred --CCc-------------CCcc--------------cceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 366 --NGD-------------YNAK--------------LGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 366 --~~~-------------~~~~--------------~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+.. ++++ ...++||++++|+.++.+ .+++|++|++|.+++|+..
T Consensus 106 g~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~ 185 (193)
T cd03353 106 GEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGA 185 (193)
T ss_pred cCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCC
Confidence 000 0000 012567777777776544 6899999999999998764
Q ss_pred c
Q 015225 410 I 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 186 ~ 186 (193)
T cd03353 186 L 186 (193)
T ss_pred E
Confidence 3
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=114.53 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=84.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||+ ..||+|++++|+|||+|+++.+.. .+++|+|++....+. +... .++ +.+
T Consensus 1 ~~~iILAgG--~s~Rmg----~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~---~~~~---~~~--~~~ 64 (186)
T TIGR02665 1 ISGVILAGG--RARRMG----GRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPER---YAQA---GFG--LPV 64 (186)
T ss_pred CeEEEEcCC--ccccCC----CCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHH---Hhhc---cCC--CcE
Confidence 468999999 999996 259999999999999999999975 588999888654322 2111 122 233
Q ss_pred eeC--CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 84 LKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 84 v~~--~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.. ....|+.++++.+++.+. .+.+++++||.++ ...+..+++.+.+.++.
T Consensus 65 i~~~~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 65 VPDALADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred EecCCCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 332 345799999999998774 5789999999975 44477777765443333
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-13 Score=120.67 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=81.3
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----------eeEECCCCEECCCcE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----------NSIIGWKSSLGRWAR 362 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----------~s~i~~~~~ig~~~~ 362 (411)
.|++++.|.+++.|.+++.||++|.|+.+|+|.. ++||++|.|+++|+|. +++||++|.||.+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 5777888888888888899999999999999874 5899999999999995 579999999999988
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCC--CCCc
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVS--VQEE 408 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~--~~~~ 408 (411)
+.+ |+|+++|.||.+++| .+|+|++|++|+.+ +|+.
T Consensus 134 I~g----------~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~ 178 (269)
T PLN02296 134 LHG----------CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG 178 (269)
T ss_pred ecC----------CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence 755 666666666666554 57888888888887 4443
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=120.31 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=86.3
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccce
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+++.++.|++++.|.++++||++|.|++++.|. +++||++|.|+.+++|. +++||++|.||.++.+.+.-.++. ...
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~-~~~ 160 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPS-AKP 160 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccccccc-CCC
Confidence 578888999999999899999999999999997 69999999999999997 899999999999999975211111 111
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
++||++++||.++++ .+++|+++++|.+++|+.
T Consensus 161 v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~ 200 (231)
T TIGR03532 161 VVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPN 200 (231)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCC
Confidence 566666666666555 577788888888777654
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=99.11 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=63.6
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
+||++++|++++.|. +++|+++|.|+++|+|.+++|++++.|++++.|.+++|++++.|++++++..+ ++
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~---------~~ 70 (79)
T cd05787 1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPG---------SL 70 (79)
T ss_pred CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCC---------CE
Confidence 367788888888886 68888888888888888888888888888888888888888888888777766 77
Q ss_pred ECCCCEEC
Q 015225 378 LGEAVTVE 385 (411)
Q Consensus 378 i~~~~~i~ 385 (411)
++++++|+
T Consensus 71 v~~~~~ig 78 (79)
T cd05787 71 ISFGVVIG 78 (79)
T ss_pred EeCCcEeC
Confidence 77776665
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=118.99 Aligned_cols=128 Identities=20% Similarity=0.335 Sum_probs=90.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
+.+.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+...+++++|+|+++.+. +.+++.+.. ++.+
T Consensus 23 ~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~ 93 (252)
T PLN02728 23 KSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVP 93 (252)
T ss_pred CceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCc
Confidence 45789999999 9999964 679999999999999999999998557999999987653 333333332 3444
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCC--ccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D--~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
+.++. ...+..++++.+++.+. .+..+|+.+| .++ ...+..+++...+.+ +.+...+.
T Consensus 94 i~~v~--gg~~r~~SV~~gl~~l~---~~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 94 LKFAL--PGKERQDSVFNGLQEVD---ANSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred eEEcC--CCCchHHHHHHHHHhcc---CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 55442 34556889999998874 2334455555 564 445788888776554 34555554
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=109.84 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=79.4
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEEe-----eEECCCCEECCCcEEecCCcC
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVLN-----SIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~~ 369 (411)
+++++.|++++.|.+++.||++|.|+++|.|.. .+||++|.|+++|.|.+ ++|++++.|+.++++.+
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 78 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG---- 78 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC----
Confidence 677888888888888899999999999999986 49999999999999985 89999999999999976
Q ss_pred CcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 370 NAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
++||++++|+.++.+ .+++|++++.+.
T Consensus 79 ------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg 106 (154)
T cd04650 79 ------AKVGNYVIVGMGAILLNGAKIGDHVIIG 106 (154)
T ss_pred ------cEECCCCEEcCCCEEeCCCEECCCCEEC
Confidence 889998888888877 445555555444
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=107.46 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=43.1
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEEC
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIG 352 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~ 352 (411)
.++.+.+++++++.|++++.|.++++++.++.||+++.|. ++.|++++.||++|.|. ++.|+
T Consensus 2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred cccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 3566777777777777777777777777777777777776 36666666666666665 55555
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=114.82 Aligned_cols=110 Identities=22% Similarity=0.386 Sum_probs=83.2
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||.. +|+|++++|+|||+|+++.+.. .+++|+|++++. +....... ..+.
T Consensus 7 ~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~-~~~~~~~~-------~~~~ 69 (200)
T PRK02726 7 NLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAA--CADEVYIITPWP-ERYQSLLP-------PGCH 69 (200)
T ss_pred CceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCH-HHHHhhcc-------CCCe
Confidence 5789999999 9999953 8999999999999999999986 378898887643 22222211 1345
Q ss_pred EeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHH
Q 015225 83 YLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 83 ~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~ 132 (411)
++.. ....|..++++.+++.+. .++++|++||+++ ...+..+++.+.
T Consensus 70 ~i~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred EecCCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 5543 334688999999999875 4789999999986 445777777654
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=117.89 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=60.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECC-----CcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------eeEECCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP-----NVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL---------NSIIGWK 354 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~s~i~~~ 354 (411)
+.++.+++.+++++.|+++++|.+ ++.||++|.|+.++.|+ ++.||++|.|+.++.|. .++|+++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDn 179 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 179 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCC
Confidence 455666666666666666666653 34555555555555554 35666666666666552 3688888
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.||++|.|.++ ++||+++.|++|++|
T Consensus 180 v~IGa~a~I~~G---------V~IG~gavIGaGavI 206 (269)
T TIGR00965 180 CFIGARSEIVEG---------VIVEEGSVISMGVFI 206 (269)
T ss_pred CEECCCCEEcCC---------CEECCCCEEeCCCEE
Confidence 888888888877 777888777777777
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=116.60 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=12.5
Q ss_pred CEECCCcEEE-eeEECCCCEECCCcEEecC
Q 015225 338 VEIKENAVVL-NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 338 ~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~ 366 (411)
|+||++|.|+ +++|.+++.||+++.|+.+
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaG 203 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMG 203 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCC
Confidence 3344444433 3334444444444444444
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=109.75 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=92.0
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
..+-+|||||| +|+||. .+|.|+|+.|+|++.++++...++ +.+++++|+++.. +....... +..
T Consensus 4 ~~v~~VvLAAG--rssRmG-----~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~------~~~ 69 (199)
T COG2068 4 STVAAVVLAAG--RSSRMG-----QPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLA------QLG 69 (199)
T ss_pred cceEEEEEccc--ccccCC-----CcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhc------cCC
Confidence 45789999999 999996 599999999999999999999996 9999999988762 22222211 234
Q ss_pred eEEeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhc
Q 015225 81 VRYLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRY 134 (411)
Q Consensus 81 i~~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~ 134 (411)
++++.. +...|.+.|+..+.+....+. +.++++.||++. ..++..+++.+...
T Consensus 70 ~~~v~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 VTVVVNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred eEEEeCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 555543 445699999999999886332 589999999985 66788888887655
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-13 Score=131.92 Aligned_cols=121 Identities=18% Similarity=0.265 Sum_probs=78.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec--
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG-- 365 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~-- 365 (411)
.++.+.+++.||+++.|+++|.|. +++||++|.|+++|.|.+++|+++|.||+++.|. +++|+++|.||+++.+.+
T Consensus 272 ~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 272 PNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred CCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 355566667777777777777776 6777777777777777777777777777766666 466666655555443221
Q ss_pred ---CCc-------------CCccc--------------ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 366 ---NGD-------------YNAKL--------------GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 366 ---~~~-------------~~~~~--------------~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
+.. .++.+ ..++||++++||.++.| .+++|++|++|.+++|+.
T Consensus 351 ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~ 430 (451)
T TIGR01173 351 IGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEG 430 (451)
T ss_pred ECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCC
Confidence 000 01111 02667777777777654 689999999999999886
Q ss_pred cc
Q 015225 409 II 410 (411)
Q Consensus 409 ~~ 410 (411)
.+
T Consensus 431 ~~ 432 (451)
T TIGR01173 431 AL 432 (451)
T ss_pred cE
Confidence 43
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=124.85 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=40.4
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE--------------------eeEECCCCEECCCcEEE--
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI--------------------SCIVLDDVEIKENAVVL-- 347 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~~i~-- 347 (411)
++.+.+++.||+++.|+++++|.+++.||++|+|+++|+|. +++|++++.||++++|.
T Consensus 142 ~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~ 221 (343)
T PRK00892 142 GAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRG 221 (343)
T ss_pred CCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecC
Confidence 34444445555555555555555555566666666666663 35666666666666663
Q ss_pred ---eeEECCCCEECCCcEEe
Q 015225 348 ---NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 348 ---~s~i~~~~~ig~~~~i~ 364 (411)
+++|++++.|+..+.|.
T Consensus 222 ~~~~t~Ig~~~~i~~~v~I~ 241 (343)
T PRK00892 222 ALDDTVIGEGVKIDNLVQIA 241 (343)
T ss_pred ccccceeCCCCEEeCCeEEc
Confidence 34444444444444443
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=104.63 Aligned_cols=92 Identities=24% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE----------------EeeEECCCCEECCCcE
Q 015225 300 HPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV----------------LNSIIGWKSSLGRWAR 362 (411)
Q Consensus 300 ~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i----------------~~s~i~~~~~ig~~~~ 362 (411)
++++.|++++.|+++++||++|.|++++.|. +++|+++|.|++++.+ .+++|++++.||+++.
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 81 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT 81 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence 4444555555555555555555555555553 4555555555555554 4556666666666666
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+..+ ++|++++.|++++.+..+ +.+++.+
T Consensus 82 v~~~---------~~ig~~~~i~~~~~v~~~-i~~~~~~ 110 (119)
T cd03358 82 ILPG---------VTIGEYALVGAGAVVTKD-VPPYALV 110 (119)
T ss_pred EeCC---------cEECCCCEEccCCEEeCc-CCCCeEE
Confidence 6555 666666666666555433 4444443
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=109.75 Aligned_cols=95 Identities=35% Similarity=0.427 Sum_probs=73.0
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecCC
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~~ 367 (411)
.||+++.|+++|.|.+++.||++|.|+++|.|. +++||++|.|++++.|. .+.||+++.|+.++.+.++
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~- 82 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGP- 82 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCC-
Confidence 577777777777777777888888888888776 37889999999998884 5778888888888888877
Q ss_pred cCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
++||++++|+.++.|.++.|++++.+
T Consensus 83 --------~~Ig~~~~Ig~~~~I~~~~Ig~~~~I 108 (167)
T cd00710 83 --------AYIGDNCFIGFRSVVFNAKVGDNCVI 108 (167)
T ss_pred --------EEECCCCEECCCCEEECCEECCCCEE
Confidence 88888888888887744444444433
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-12 Score=113.16 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=67.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
.+.+.+++.||+++.|+++++|++++.||++|.|+++|.|. ++.|+++|.|+.++.+. ++.+++++.||+++.+..+
T Consensus 93 ~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 171 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG- 171 (201)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-
Confidence 44556666677777777777777667777777777777775 46777777777777766 5677777777777666665
Q ss_pred cCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.|+++++|++++++.++ +.+++++
T Consensus 172 --------~~i~~~~~i~~~~~v~~~-~~~~~~~ 196 (201)
T TIGR03570 172 --------VTIGAGAIVGAGAVVTKD-IPDGGVV 196 (201)
T ss_pred --------CEECCCCEECCCCEECCc-CCCCCEE
Confidence 666666666666666443 4444443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-13 Score=122.74 Aligned_cols=94 Identities=21% Similarity=0.395 Sum_probs=85.4
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCccc
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKL 373 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~ 373 (411)
+..+.++++++|++.+.|. .++||.||.||++++|.+|+|++|++||+||.|.+||||.++.||++|.+.+
T Consensus 332 g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n-------- 402 (433)
T KOG1462|consen 332 GADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN-------- 402 (433)
T ss_pred chhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee--------
Confidence 4467899999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred ceeEECCCCEECCCcEEcceEEcCC
Q 015225 374 GITILGEAVTVEDEVVVINSIVLPN 398 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v~~~~i~~~ 398 (411)
|.||.+-+|.++....+.++-.+
T Consensus 403 --C~Ig~~yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 403 --CIIGPGYVVEAKGKHGGEVLVSN 425 (433)
T ss_pred --eEecCCcEEcccccccccEeecc
Confidence 99999999997777766665443
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-12 Score=111.04 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=56.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
.+.+.+++.+++++.|+++|+|++++.||++|.|+++|.|. ++.|+++|.|+.++.+. +++|+++|.||.++.+..+
T Consensus 90 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 168 (197)
T cd03360 90 SAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQG- 168 (197)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCC-
Confidence 34555556666666666666666666666666666666664 45666666666666665 4566666666666665554
Q ss_pred cCCcccceeEECCCCEECCCcEEc
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||+++.|+++++|.
T Consensus 169 --------~~ig~~~~v~~~~~v~ 184 (197)
T cd03360 169 --------VTIGAGAIIGAGAVVT 184 (197)
T ss_pred --------CEECCCCEECCCCEEc
Confidence 5556666555555553
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=108.08 Aligned_cols=95 Identities=23% Similarity=0.337 Sum_probs=78.1
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEEe-----eEECCCCEECCCcEEecCCcC
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVLN-----SIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~~ 369 (411)
+++++.|+++|+|.++++||+++.|+++++|.. ++||++|.|+++|+|.. ++|++++.|+.++.+.+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 77 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG---- 77 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee----
Confidence 567778888888888899999999999998874 69999999999999996 59999999999999987
Q ss_pred CcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 370 NAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
++|++++.|+.++.+ .+|.+++++.+..
T Consensus 78 ------~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 78 ------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred ------eEECCCCEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 788888888877766 2455555555544
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=114.96 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=78.6
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----------eeEECCCCEECCCcE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----------NSIIGWKSSLGRWAR 362 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----------~s~i~~~~~ig~~~~ 362 (411)
.++++++|.++++|.+++.||+++.|+.+++|.. .+||++|.|+++|+|. +++||++|.||++|.
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcE
Confidence 4777888888888888889999999998888873 7999999999999994 589999999999998
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
+.+ |+|++++.||.+++| .+|+|++|+.|+.
T Consensus 141 L~~----------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 141 LRS----------CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred ECC----------eEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 865 777777777777665 4677777777774
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=106.79 Aligned_cols=109 Identities=23% Similarity=0.441 Sum_probs=90.3
Q ss_pred eEEEEEecCCCCCcccc-cCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFR-PLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~-plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|.+|||||| +|+||. + =|||++++|+|||+|+++.+.+ .+++|++.++.+...+++++.+ ++ ++
T Consensus 1 m~~iiMAGG--rGtRmg~~-----EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~----~g--v~ 65 (177)
T COG2266 1 MMAIIMAGG--RGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLES----VG--VK 65 (177)
T ss_pred CceEEecCC--cccccCCC-----cCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHh----cC--ce
Confidence 579999999 999997 4 5999999999999999999998 4899999988888889999876 23 55
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHH
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~ 132 (411)
++.. ...|--.-+..+.+.+. .++|++++|+++ +..+..+++.+.
T Consensus 66 vi~t-pG~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 66 VIET-PGEGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEEc-CCCChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 5553 34567788888888885 699999999986 445777777765
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=111.75 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=24.0
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
.+.||++++|+.++.| .+++|++++.|..++|+.
T Consensus 150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~ 190 (205)
T cd03352 150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPG 190 (205)
T ss_pred ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCC
Confidence 3667777777776655 577788888888777654
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=95.37 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=71.4
Q ss_pred EECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc-eE
Q 015225 316 SISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN-SI 394 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~ 394 (411)
+||+++.|++++.|.+++|+++|+|++++.|.+++|++++.|++++++.+ ++|++++.|+.++.+.+ ++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~----------svv~~~~~i~~~~~i~~~~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD----------SIIGDNAVIGENVRVVNLCI 70 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC----------CEECCCCEECCCCEEcCCeE
Confidence 47888999999999999999999999999999999999999999999987 89999999999999966 99
Q ss_pred EcCCCEEc
Q 015225 395 VLPNKVLN 402 (411)
Q Consensus 395 i~~~~~v~ 402 (411)
+++++.+.
T Consensus 71 ig~~~~i~ 78 (79)
T cd03356 71 IGDDVVVE 78 (79)
T ss_pred ECCCeEEC
Confidence 99998875
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=112.98 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=84.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||.. +|.|++++|+|||+|+++.+.+. ++++++|+++...+.+.......... ..+.+
T Consensus 1 ~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~ 70 (190)
T TIGR03202 1 IVAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLAD--ERIML 70 (190)
T ss_pred CeEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcC--CCeEE
Confidence 358999999 9999964 89999999999999999888775 89999999876543221111110011 12344
Q ss_pred ee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHh
Q 015225 84 LK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKR 133 (411)
Q Consensus 84 v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~ 133 (411)
+. .+...|.+++++.+++.+.....+.+++++||+++ ...+..+++...+
T Consensus 71 ~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 71 VCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred EECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 32 23345888999999987643235789999999986 4447777776543
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-11 Score=107.25 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=126.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~ 82 (411)
+.||||||| .|+||.. ..||.+++++|+|+|.|+++.|.+.+.+++|+|+++... +.+++.+.. ..+.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999986 789999999999999999999999889999999987654 444444433 3456
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
++. .+....+|++.++..+... .+.+++-.|--++ ...+..+++...+ +..+.+...+. .+ .....|
T Consensus 70 iv~--GG~tR~~SV~ngL~~l~~~-~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~--~D----Tik~v~- 138 (221)
T PF01128_consen 70 IVE--GGATRQESVYNGLKALAED-CDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV--TD----TIKRVD- 138 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCT-SSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE---SS----EEEEES-
T ss_pred Eec--CChhHHHHHHHHHHHHHcC-CCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec--cc----cEEEEe-
Confidence 654 4456789999999988733 2577777777765 4457888887654 23444555555 22 223444
Q ss_pred CCCceeEEeccCCCcccCcccc-eEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 161 NTKELLHYTEKPETFVSDLINC-GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~-Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
.++.+.+..+. +.++.+ -=..|+.+.+....+..... ...+ +|--..+
T Consensus 139 ~~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~-------------------------~~~~-tDdasl~ 187 (221)
T PF01128_consen 139 DDGFVTETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEE-------------------------GFEF-TDDASLV 187 (221)
T ss_dssp TTSBEEEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHH-------------------------THHH-SSHHHHH
T ss_pred cCCcccccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhc-------------------------CCCc-cCHHHHH
Confidence 46666665432 222222 22345554443222221100 0011 2211212
Q ss_pred c-CCCceEEEeecceeeecCCccchhhcchHH
Q 015225 240 A-GKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 240 ~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
. .+.++..++-+..-.-|.+|+|+..+...+
T Consensus 188 ~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 188 EAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 1 245788777666667789999998886543
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=114.19 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=25.2
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEE
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVL 347 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~ 347 (411)
.+++.||+++.|+++++|.+++.||+++.|++++.|. ...||++|.|+++|+|.
T Consensus 27 ~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 27 GANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 3333334444444444444444444444454444443 24455555555555554
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=106.44 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=82.4
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecCCc
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~~~ 368 (411)
.|++.++|.++|+|.+++.||+++.|..+++|. .-.||.+|.|-+||+|. .++||+++.||.++.|.+
T Consensus 13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG--- 89 (176)
T COG0663 13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG--- 89 (176)
T ss_pred CCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE---
Confidence 577778888888888889999999999999987 58999999999999997 369999999999999988
Q ss_pred CCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCC
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSV 405 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~ 405 (411)
|.|+++|.||+|++| .+|+|++|+.|+.+-
T Consensus 90 -------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k 126 (176)
T COG0663 90 -------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK 126 (176)
T ss_pred -------eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCc
Confidence 788888777777766 578888888887743
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=121.83 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=86.0
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| .|+||+ ..||+|++++|+|||+|+++.+.. .+++|+|++....+.+.+++.. ..
T Consensus 3 ~~~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~~~~~~~~~~------~~ 68 (366)
T PRK14489 3 ISQIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDPARYQDLFPG------LP 68 (366)
T ss_pred CCCceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCHHHHHhhccC------Cc
Confidence 677899999999 999995 359999999999999999999986 4889988665444434333211 12
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.........|..++++.+++.+. .+.+++++||+++ ...+..+++.+...+++
T Consensus 69 ~i~d~~~g~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 69 VYPDILPGFQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred EEecCCCCCCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 211112223588899999988764 5779999999975 44577777765544444
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=109.43 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=72.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
...+.+.++++++++|++++.|+++++|++++.||++|.|. +++|+++|.|++++.|. .++.++.+++++++
T Consensus 87 ~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~-----~~~~i~~~~~ig~~-- 159 (201)
T TIGR03570 87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIA-----PGVTLSGGVVIGEG-- 159 (201)
T ss_pred eEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC-----CCCEEeCCcEECCC--
Confidence 34567777888888888888887788888888888887774 66666666666666544 44444444444444
Q ss_pred CCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
|.||.++.|..++.+ .+|+++++++|..++|+..
T Consensus 160 -------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~ 194 (201)
T TIGR03570 160 -------VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGG 194 (201)
T ss_pred -------CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCC
Confidence 555555666556666 5789999999999988754
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-12 Score=101.24 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=62.2
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe---------eEECCCCEE
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN---------SIIGWKSSL 357 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------s~i~~~~~i 357 (411)
++.+.+++.+++.|++|++|.+++++..++.||++|.|+ +++|+++|.||++|.|.. ..|+++|.|
T Consensus 3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~I 82 (147)
T cd04649 3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLL 82 (147)
T ss_pred EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEE
Confidence 455666777777777777777777777777777777775 478899999999999872 455555555
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.++.| + +.||++++|++|++|
T Consensus 83 G~ga~I-g----------v~IG~~~vIGaGsvV 104 (147)
T cd04649 83 GANSGI-G----------ISLGDNCIVEAGLYV 104 (147)
T ss_pred CCCCEE-e----------EEECCCCEECCCCEE
Confidence 555555 2 666777777766655
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=107.81 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=98.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~ 79 (411)
|+.+.+|||||| .|+||.. ..||.+++++|+||++|+++.|...+.+++|+|+++... +.+.++.. ...+.
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCC
Confidence 456889999999 9999988 999999999999999999999999988999999987633 33333332 12334
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
++.++. ......+|++.+++.+....++.+|+..+--++ ...+..+++.. .+..+.+.+.++
T Consensus 74 ~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~alpv 137 (230)
T COG1211 74 RVEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAILALPV 137 (230)
T ss_pred eEEEec--CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEEEEeec
Confidence 566664 456778999999999875446777777777775 44578887433 334445555555
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=126.62 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=86.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCc------
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWA------ 361 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~------ 361 (411)
+++.+.+++.||+++.|+++|+|. +++||++|+|+++|+|.+++|+++|.||.++++. ++.|++++.||.++
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 466777788888888888888886 7999999999999999999999998888777776 55555555544432
Q ss_pred ----------------------EEecCCc----CCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 362 ----------------------RVQGNGD----YNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 362 ----------------------~i~~~~~----~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
.|+.+.- .......++||++++||.++.+ .+|+|++|++|.+++|+.
T Consensus 358 ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~ 437 (459)
T PRK14355 358 MGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPD 437 (459)
T ss_pred ECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCC
Confidence 2222210 0000112567777777777655 689999999999999876
Q ss_pred cc
Q 015225 409 II 410 (411)
Q Consensus 409 ~~ 410 (411)
.+
T Consensus 438 ~~ 439 (459)
T PRK14355 438 SL 439 (459)
T ss_pred cE
Confidence 43
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=99.31 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=63.6
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAV 382 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~ 382 (411)
++|++++.|. +++||++|.|+ ++.|.+|+|+++|.|+++|.|.+|+|++++.||+++.+.+ ++|++++
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~----------siig~~~ 69 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR----------AIIDKNV 69 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe----------EEECCCC
Confidence 3455566664 68888888888 8888888888888888888888888888888888888866 8888888
Q ss_pred EECCCcEEcce
Q 015225 383 TVEDEVVVINS 393 (411)
Q Consensus 383 ~i~~~~~v~~~ 393 (411)
.|++++.+.+.
T Consensus 70 ~Ig~~~~v~~~ 80 (104)
T cd04651 70 VIPDGVVIGGD 80 (104)
T ss_pred EECCCCEECCC
Confidence 88888777544
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-12 Score=109.54 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=76.4
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
...+.+.+.+++++.+++++.|.++++|+++++||++|.|. +++|+++|.||++|.+. ++++..++.||++|.++.
T Consensus 84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~-- 161 (197)
T cd03360 84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGA-- 161 (197)
T ss_pred ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECC--
Confidence 34567777888888888888888888888888888888885 67777777777777765 566666666666555544
Q ss_pred cCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 368 DYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
++.|..++.| .+|+++++++|.+++|+..
T Consensus 162 -------------~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~ 191 (197)
T cd03360 162 -------------GATIIQGVTIGAGAIIGAGAVVTKDVPDGS 191 (197)
T ss_pred -------------CCEEcCCCEECCCCEECCCCEEcCCCCCCC
Confidence 4444444444 5688899999999887654
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=94.10 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=70.3
Q ss_pred EECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc-ceE
Q 015225 316 SISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI-NSI 394 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~ 394 (411)
+||+++.|+++|.|.+++|+++|.|+++|.|.+++|++++.|++++++.+ ++|++++.|+.++.+. +++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~ 70 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIPPGSL 70 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEECCCCE
Confidence 47889999999999999999999999999999999999999999999987 8999999999999884 788
Q ss_pred EcCCCEEc
Q 015225 395 VLPNKVLN 402 (411)
Q Consensus 395 i~~~~~v~ 402 (411)
+++++.+-
T Consensus 71 v~~~~~ig 78 (79)
T cd05787 71 ISFGVVIG 78 (79)
T ss_pred EeCCcEeC
Confidence 88887663
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=120.19 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=95.5
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
..+.+++++.|||.|.|+|++.|++++.||..+.++++.||.++.+++=++|+++.||.+|.||+++...++...+- =
T Consensus 319 e~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK--~ 396 (460)
T COG1207 319 EGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNK--F 396 (460)
T ss_pred eccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCccc--c
Confidence 35577788888888888888899999999999999999999999999999999999999999999988877533221 1
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
+++||+++.||+++.+ .+..|++|++|++++|+.-+
T Consensus 397 ~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aL 439 (460)
T COG1207 397 KTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGAL 439 (460)
T ss_pred eeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCce
Confidence 2899999999999866 69999999999999998643
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=96.45 Aligned_cols=85 Identities=25% Similarity=0.225 Sum_probs=76.5
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcc
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
.+++++++++.|++++.|.++++||+++.|+++|.|. +++||++|.|+. .+.+|+|++++.+++++.|++
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~------- 79 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH------- 79 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-------
Confidence 3478999999999999999999999999999999998 599999999975 578999999999999999986
Q ss_pred cceeEECCCCEECCCcEE
Q 015225 373 LGITILGEAVTVEDEVVV 390 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v 390 (411)
++||+++.|++++..
T Consensus 80 ---siIg~~v~ig~~~~~ 94 (101)
T cd05635 80 ---SYLGSWCNLGAGTNN 94 (101)
T ss_pred ---eEECCCCEECCCcee
Confidence 999999999988765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=108.64 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE---------------------
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL--------------------- 347 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~--------------------- 347 (411)
.++.+. ++.||+++.|+++|+|. +++||+++.|+++|.|.+++||++|.|++++.+.
T Consensus 13 ~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~ 90 (204)
T TIGR03308 13 PTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMY 90 (204)
T ss_pred CCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccc
Confidence 356664 57899999999999998 8999999999999999999999999999999884
Q ss_pred -----------------eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 348 -----------------NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 348 -----------------~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+++||+++.||.++.|..+ +.||+++.|+++++|.+. +.+++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g---------v~Ig~~~~I~~gs~v~~~-i~~~~~~ 151 (204)
T TIGR03308 91 FDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG---------VTIGNGAVIAAGAVVTKD-VAPYTIV 151 (204)
T ss_pred cccccccccccccccCCCeEECCCCEECCCCEECCC---------CEECCCCEECCCCEECCC-CCCCcEE
Confidence 4567777777777777776 788888888888877543 5666655
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-12 Score=126.56 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=76.8
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCccccee
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGIT 376 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~ 376 (411)
+.+++++.|+++|.|.++++||.+|.||+++.|.+++|++++.|++++.+.+++|+++|.||.++.+.+... .....+
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~--~~~~~~ 391 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDG--VKKHRT 391 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccc--cccCCc
Confidence 445666666666667666777777777777777777777777777777777777888888887776643110 000016
Q ss_pred EECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 377 ILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 377 ~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
+||++++||.++.| .+++|++|+.|.+++|+..+
T Consensus 392 ~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 432 (450)
T PRK14360 392 VIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSL 432 (450)
T ss_pred EeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCE
Confidence 66777777766655 58999999999999988654
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=108.67 Aligned_cols=100 Identities=18% Similarity=0.368 Sum_probs=71.5
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++.+|||||| .|+||+ .+|+|++++| +|+|+|+++.+... +++|+|++++ +.. . . .+
T Consensus 8 ~i~~vILAgG--~s~RmG-----~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~--~~~----~-----~--~~ 65 (196)
T PRK00560 8 NIPCVILAGG--KSSRMG-----ENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKD--KKF----E-----F--NA 65 (196)
T ss_pred CceEEEECCc--ccccCC-----CCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECc--hhc----c-----c--CC
Confidence 5789999999 999994 4999999999 99999999999874 7888888764 111 1 1 12
Q ss_pred EEeeC--CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCC-hHHH
Q 015225 82 RYLKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFP-LPDL 127 (411)
Q Consensus 82 ~~v~~--~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~-l~~~ 127 (411)
.++.. ....|...++..++.... .+.+++++||+++ +.+ +..+
T Consensus 66 ~~v~d~~~~~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 66 PFLLEKESDLFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cEEecCCCCCCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 33332 233466666665555443 5899999999986 333 4454
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=123.23 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=69.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECC---------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGR--------- 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~--------- 359 (411)
++.+.+++.||+++.|+++|.|. +++||++|.|+++|.|.+|+|+++|.|++++.|. ++.+++++.||+
T Consensus 277 ~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i 355 (456)
T PRK09451 277 NVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355 (456)
T ss_pred CeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceee
Confidence 44555555666666666666664 5666666666666666666666666665555554 444444444333
Q ss_pred -------------------------CcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 360 -------------------------WARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 360 -------------------------~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
++.+.+... .....++||++|+||.++.+ .+++|++|++|.+++|+
T Consensus 356 ~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~--~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~ 433 (456)
T PRK09451 356 GKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDG--ANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAE 433 (456)
T ss_pred CCCCccCccccccccEECCCCEEcCCeEEecccC--cccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCC
Confidence 333322100 00012667777777777765 58999999999999987
Q ss_pred cc
Q 015225 408 EI 409 (411)
Q Consensus 408 ~~ 409 (411)
.-
T Consensus 434 ~~ 435 (456)
T PRK09451 434 NE 435 (456)
T ss_pred CC
Confidence 53
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=123.33 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=77.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec---
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG--- 365 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~--- 365 (411)
.+.+.++++||+++.|+++|.|. +++||++|.|+++|.|.+++|+++|.||+++.|. +++|++++.||.++.+.+
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i 359 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVL 359 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEe
Confidence 44556678888888888888886 7999999999999999999999999999999998 899999999998876644
Q ss_pred --CCc--CCcccceeEECCCCEECCCc
Q 015225 366 --NGD--YNAKLGITILGEAVTVEDEV 388 (411)
Q Consensus 366 --~~~--~~~~~~~~~i~~~~~i~~~~ 388 (411)
+.. +...++.++||+++.|++++
T Consensus 360 ~~~~~i~~~~~ig~~~ig~~~~Ig~~~ 386 (456)
T PRK14356 360 GKGAKANHLTYLGDAEIGAGANIGAGT 386 (456)
T ss_pred cCCcEecccccccCeEECCCCEECCCc
Confidence 111 23344556677777766664
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=121.51 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
+|++++.|++++.|.++++||+++.||.++.+.+++|++++.|++.+.+.+++||++|.||.++.+.++... ..+.++
T Consensus 324 iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~--~~~~~~ 401 (482)
T PRK14352 324 EIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGV--NKHRTT 401 (482)
T ss_pred EEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccc--cCCCCe
Confidence 344444444444444445555555555555555566666666666666677778888888888776542110 011267
Q ss_pred ECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 378 LGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 378 i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
||++++||.++.+ .+++|++|++|.+++++..
T Consensus 402 IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~ 440 (482)
T PRK14352 402 IGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGA 440 (482)
T ss_pred ECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCc
Confidence 7777777777665 6899999999999988764
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=104.74 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------eeEECCCCE
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------NSIIGWKSS 356 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~s~i~~~~~ 356 (411)
+-+.+.+.||++++|||.|+|++++.||++++|+++++|. .+.||.+++|-..+.|+ ..+||+++.
T Consensus 10 AiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~ 89 (260)
T COG1043 10 AIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNT 89 (260)
T ss_pred eeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCe
Confidence 3344444455555555555555555555555555555554 45666666666555552 347777777
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
|.+++.+..+.. ...|.+.||+++.+.+.+-| .+|+||.+.++..+
T Consensus 90 IRE~vTi~~GT~--~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 90 IREFVTIHRGTV--QGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred EeeEEEEecccc--CCceeEEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 777777766521 11133555555555555555 45555555555443
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=120.11 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=75.0
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccce
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+++||+++.|+++|.|.++++||++|.|++++.|.+++|++++.+++.+.+.+++|++++.||.++.+.+.... ....
T Consensus 316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~--~~~~ 393 (458)
T PRK14354 316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGK--NKFK 393 (458)
T ss_pred CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccc--cccC
Confidence 34566666666666666667777777777777777777777777777777777777777777777666432100 0001
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
+.||+++++|.++.+ .+++|++|+.|.+++|+..+
T Consensus 394 ~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 435 (458)
T PRK14354 394 TIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDAL 435 (458)
T ss_pred CEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCE
Confidence 555666666655544 68999999999999987643
|
|
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=105.16 Aligned_cols=112 Identities=26% Similarity=0.471 Sum_probs=81.7
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|.+|||||| +|+|| . +|+|++++|+||++|+++.|... .+.++|....+.+. +. ..+
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~~~---~~-----~~g-- 61 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQGR---YA-----EFG-- 61 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCchhh---hh-----ccC--
Confidence 568999999999 99999 4 89999999999999999999996 44566655544331 11 223
Q ss_pred eEEeeCCCCC-CChHHHHHHHHHhhccCCCeEEEEcCCccc-CC-ChHHHHHHHHhcC
Q 015225 81 VRYLKEDKPH-GSAGGLYYFRDMIMEENPSHIILLNCDVCC-SF-PLPDLLEAHKRYG 135 (411)
Q Consensus 81 i~~v~~~~~~-g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~-~l~~~l~~~~~~~ 135 (411)
++++...... |...+++.+++... .+++++++||+++ .. .+..+.....+.+
T Consensus 62 ~~vv~D~~~~~GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 LPVVPDELPGFGPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CceeecCCCCCCCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 3444433333 99999999999886 6899999999986 33 3555555544333
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.26 E-value=9e-11 Score=95.46 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=16.4
Q ss_pred eEECCCCEECCCcEE-----cceEEcCCCEEcCCC
Q 015225 376 TILGEAVTVEDEVVV-----INSIVLPNKVLNVSV 405 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~ 405 (411)
+.||++++||.++.| .+|+|++|++|.++.
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEEeCCe
Confidence 444555555555444 456666666666554
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=103.39 Aligned_cols=56 Identities=30% Similarity=0.442 Sum_probs=27.5
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEE
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVV 346 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i 346 (411)
+.+.+++.||++++|+++|.|.+++.||++|.|++++.|.+ ++|+++|.|+++++|
T Consensus 14 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 14 AVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 33344444444444444444444444555555555555543 555555555555555
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-11 Score=119.89 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec--
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG-- 365 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~-- 365 (411)
.++.+.+++.||+++.|+++|.|. +++||++|.|+++++|.+++|+++|.|++++.+. +++|++++.|++++.+.+
T Consensus 281 ~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~ 359 (481)
T PRK14358 281 PGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNAR 359 (481)
T ss_pred CCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCce
Confidence 466777777788888888888885 7899999999999999999999999999999997 799999999999777543
Q ss_pred ---CCc--CCcccceeEECCCCEECCCcEE
Q 015225 366 ---NGD--YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 366 ---~~~--~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.. +-..++.++||++|.||.++++
T Consensus 360 i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i 389 (481)
T PRK14358 360 LDAGVKAGHLAYLGDVTIGAETNVGAGTIV 389 (481)
T ss_pred ecCCcccCceEEECCeEEcCCceEcCCEEE
Confidence 110 1122344777777777777655
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=116.55 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=77.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.+.+++.+.| .++.|+++|.|++ +++||++|.||++|+|.+|+|+++|.|+++|.|.+|+|++++.|++++++.++
T Consensus 282 ~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 282 PQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred CCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCC
Confidence 3455555555 3455666666653 68999999999999999999999999999999999999999999999999886
Q ss_pred CcCCcccceeEECCCCEECCCcEE
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
... .++||++++|++++++
T Consensus 361 ~~~-----~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 361 KEV-----ITVIGENEVIGVGTVI 379 (380)
T ss_pred Cce-----eEEEeCCCCCCCCcEe
Confidence 332 2578999888887654
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-11 Score=113.41 Aligned_cols=109 Identities=17% Similarity=0.323 Sum_probs=78.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| +|+||+ .+|+|++++|+|||+|+++.+.. ..++|+|+++.... ..+ .. ++
T Consensus 172 ~~~i~~iILAGG--~SsRmG-----~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~--~~~-~~----~~-- 233 (369)
T PRK14490 172 EVPLSGLVLAGG--RSSRMG-----SDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQA--EQY-RS----FG-- 233 (369)
T ss_pred cCCceEEEEcCC--ccccCC-----CCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchh--hHH-hh----cC--
Confidence 456789999999 999995 49999999999999999999986 37888887654321 111 11 23
Q ss_pred eEEeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHH
Q 015225 81 VRYLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEA 130 (411)
Q Consensus 81 i~~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~ 130 (411)
+.++.. ....|...++..+++... .+.+++++||+++ ...+..+++.
T Consensus 234 v~~i~d~~~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 234 IPLITDSYLDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CcEEeCCCCCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 333332 334688888888877543 4689999999986 3345666554
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=101.95 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=57.6
Q ss_pred cEECCCCEECCCCEECC--CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe----------------eEECCCC
Q 015225 297 VYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN----------------SIIGWKS 355 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~----------------s~i~~~~ 355 (411)
+.||+++.|.+++.|.. ++.||++|.|+++|.|. .++||++|.|+++|+|.. .+|+++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 35666666666666653 58888888888888886 578899999988888741 3555555
Q ss_pred EECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 356 SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 356 ~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
.||+++.|..+ +.||+++.|+++++|
T Consensus 132 ~Ig~~a~I~~G---------v~Ig~~~vIga~svV 157 (182)
T PRK10502 132 WLAADVFVAPG---------VTIGSGAVVGARSSV 157 (182)
T ss_pred EEcCCCEEcCC---------CEECCCCEECCCCEE
Confidence 55555555554 555555555555554
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-11 Score=119.14 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=26.1
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
++||++++||.++.| .++.|++|++|.+++|+..+
T Consensus 384 ~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~ 425 (448)
T PRK14357 384 TFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSL 425 (448)
T ss_pred cEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcE
Confidence 566776666666644 68899999999999987643
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=103.88 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=79.3
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCC-CcEEEEecccch--HHHHHHHhhhcccCCcceE
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN-LAQIFLIGFYEE--REFALYVSSISNELKVPVR 82 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~g-i~~I~Iv~~~~~--~~i~~~~~~~~~~~~~~i~ 82 (411)
||||||| .|+||. +|.|++++|+|||+|+++.+... + +++++|+++... +.+.+++.. .+ +.
T Consensus 2 aiIlA~G--~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~-~~~~~ivVv~~~~~~~~~i~~~~~~----~~--v~ 66 (233)
T cd02518 2 AIIQARM--GSTRLP------GKVLKPLGGKPLLEHLLDRLKRS-KLIDEIVIATSTNEEDDPLEALAKK----LG--VK 66 (233)
T ss_pred EEEeeCC--CCCCCC------CCcccccCCccHHHHHHHHHHhC-CCCCeEEEECCCCcccHHHHHHHHH----cC--Ce
Confidence 7999999 999993 49999999999999999999986 5 899999887654 455555442 22 33
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~ 139 (411)
++.... .+.......+.+. ...+.++++.||+++ ...++.+++.+...+.+.+
T Consensus 67 ~v~~~~-~~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 67 VFRGSE-EDVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred EEECCc-hhHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 333221 1222222222221 225789999999996 5568899988876555543
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=91.44 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=62.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.+.+ .+++||+++.|+ ++.|. +++|+++|.|+++|.|.+|+|++++.|+.++.+.+|+|++++.|++++++.++
T Consensus 7 ~~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 7 RGEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CCEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 4445 346778888887 77776 78999999999999999999999999999999999999999999998888775
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-11 Score=107.89 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=57.4
Q ss_pred EECCCCEECCCCEECC--CcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 298 YIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
-|++++.||+++.|.. +++||++|+||++|.|.+ +++|. + +.++...+++||++|.||.++.|.++
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilgg-------- 230 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGN-------- 230 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCC--------
Confidence 3444444444444442 567777777777666642 22222 1 33445567888888888888888776
Q ss_pred eeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 375 ITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.||++++|+++++|... |.+++++
T Consensus 231 -i~IGd~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 231 -VKIGEGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred -CEECCCCEECCCCEECCc-CCCCcEE
Confidence 888888888888888432 5555555
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=86.85 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc-eEE
Q 015225 318 SANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN-SIV 395 (411)
Q Consensus 318 g~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~i 395 (411)
++++.|++++.|. +++|+++|.|+++|.|.++++++++.|++++++.+ +++++++.|++++.+.+ +++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~----------sii~~~~~v~~~~~~~~~~~i 72 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS----------SIVGWNSTVGRWTRLENVTVL 72 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC----------CEEeCCCEECCCcEEecCEEE
Confidence 3334444444442 34558888899999999999999999999999988 89999999999998854 888
Q ss_pred cCCCEEc
Q 015225 396 LPNKVLN 402 (411)
Q Consensus 396 ~~~~~v~ 402 (411)
++++.+.
T Consensus 73 g~~~~i~ 79 (80)
T cd05824 73 GDDVTIK 79 (80)
T ss_pred CCceEEC
Confidence 8887764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=109.85 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=78.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| +|+||+ .+|.|+++.|+||++|+++.|... +++|+|+++... .. ... + ..+.
T Consensus 160 ~i~~IILAGG--kSsRMG-----~dKaLL~~~GkpLl~~~ie~l~~~--~~~ViVv~~~~~--~~-~~~-----~-~~v~ 221 (346)
T PRK14500 160 PLYGLVLTGG--KSRRMG-----KDKALLNYQGQPHAQYLYDLLAKY--CEQVFLSARPSQ--WQ-GTP-----L-ENLP 221 (346)
T ss_pred CceEEEEecc--ccccCC-----CCcccceeCCccHHHHHHHHHHhh--CCEEEEEeCchH--hh-hcc-----c-cCCe
Confidence 4679999999 999995 499999999999999999999874 788988875332 11 100 0 0223
Q ss_pred Eee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-C-CChHHHHHHH
Q 015225 83 YLK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-S-FPLPDLLEAH 131 (411)
Q Consensus 83 ~v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~-~~l~~~l~~~ 131 (411)
++. .....|...+++.+++... .+.+++++||+++ + ..+..+++.+
T Consensus 222 ~I~D~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 222 TLPDRGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred EEeCCCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 333 2335699999999988754 3578999999996 3 3467776654
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=100.43 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=68.8
Q ss_pred cCCcEECCCCEECCCCEE----CCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe------------------
Q 015225 294 AGDVYIHPSAKVHPTAKI----GPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN------------------ 348 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~------------------ 348 (411)
.+...+|+++.++.++.+ .+...||+++.|++++.|. ++.||++|.|++++.|.+
T Consensus 41 ~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~ 120 (192)
T PRK09677 41 DGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLP 120 (192)
T ss_pred CCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccC
Confidence 345567777777777777 3568889999999888886 688999999998888863
Q ss_pred ----------eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 349 ----------SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 349 ----------s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
++|+++|.||.++.+..+ ++||++|+|+++++|..+ +.+++++
T Consensus 121 ~~~~~~~~~~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~Iga~s~v~~~-i~~~~~~ 173 (192)
T PRK09677 121 PDMRTLESSAVVIGQRVWIGENVTILPG---------VSIGNGCIVGANSVVTKS-IPENTVI 173 (192)
T ss_pred hhhcccccCCeEEcCCcEECCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEE
Confidence 346666666666666655 666666666666666443 4455444
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-11 Score=106.83 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=62.5
Q ss_pred CCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEeeEECCCCEECC---CcEEEeeEECCCCEECCCcEEecCCcC
Q 015225 295 GDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLISCIVLDDVEIKE---NAVVLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
-++.|++++.||+++.|. .+++||++|.||++|.| .++++||. .+...+++||++|.||.+|.|.++
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg--- 211 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN--- 211 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC---
Confidence 344555555555555554 24566666666666665 55555553 222345788999999999988888
Q ss_pred CcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 370 NAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.||++++||+|++|... |.+++++.
T Consensus 212 ------v~IG~~a~IGAgSvV~~d-Vp~~~~v~ 237 (273)
T PRK11132 212 ------IEVGRGAKIGAGSVVLQP-VPPHTTAA 237 (273)
T ss_pred ------CEECCCCEECCCCEECcc-cCCCcEEE
Confidence 899999999988888543 66666664
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=103.31 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCEECCCCEECCCcEECCCcEECCCcEEEe-eEECC--------CCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCc
Q 015225 302 SAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLD--------DVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 302 ~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~--------~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
++.|++++.|..++.||++|.||++|.|.. +.|+. +++||++|.|+ +++|..++.||+++.|+.+
T Consensus 132 Ga~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag----- 206 (272)
T PRK11830 132 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMG----- 206 (272)
T ss_pred CCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCC-----
Confidence 333444444444444444444444444442 22222 35666666666 5666666666666666665
Q ss_pred ccceeEECCCCEECC
Q 015225 372 KLGITILGEAVTVED 386 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~ 386 (411)
++|+.++.|.+
T Consensus 207 ----~vV~~gt~I~~ 217 (272)
T PRK11830 207 ----VFLGQSTKIYD 217 (272)
T ss_pred ----CEEcCCeEECc
Confidence 66666666663
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=102.61 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=60.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcE-ECCCcE---EE-eeEECCCCEECCCcEEEe---------eEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVR-VGAGVR---LI-SCIVLDDVEIKENAVVLN---------SIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~---------s~i~~~ 354 (411)
.+.+|.+.++|.+++.|++|++|.++++|+.++. +|.++. |. .++|+++|.||.+|.|.. +.||++
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~ 256 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEG 256 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCC
Confidence 4667777777777777777777777777777777 665555 43 678888888888888843 344444
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.||.++.| + ..||++|+|++|++|
T Consensus 257 ~lIGagA~I--G---------I~IGd~~iIGAGavV 281 (341)
T TIGR03536 257 CLLGANAGI--G---------IPLGDRCTVEAGLYI 281 (341)
T ss_pred cEECCCCEE--e---------eEECCCCEECCCCEE
Confidence 444444444 2 556666666655544
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=98.92 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=56.7
Q ss_pred ECCCCEECCCCEE--CCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe-------------------eEECCC
Q 015225 299 IHPSAKVHPTAKI--GPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN-------------------SIIGWK 354 (411)
Q Consensus 299 i~~~~~v~~~~~i--~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------s~i~~~ 354 (411)
+|+++.|.+.+.+ +.++.||+++.|+.+|+|. +..||++|.|+.+|.|.. .+||++
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~ 137 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCC
Confidence 3444444443333 2456666666666666663 367788888888877751 466677
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
|.||.++.|..+ +.||++++|+++++|... +.+++++
T Consensus 138 v~IG~~~~I~~g---------v~IG~~~vIgagsvV~kd-vp~~~v~ 174 (203)
T PRK09527 138 VWIGSHVVINPG---------VTIGDNSVIGAGSVVTKD-IPPNVVA 174 (203)
T ss_pred cEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCcEE
Confidence 777776666666 666666666666666432 4444444
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=113.42 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=89.0
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec----
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG---- 365 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~---- 365 (411)
..+.+.+.||+++.|++++.|++++.||++|.|++++.|.+++||++|+||+++.|. +|+||++|.||+++.+.+
T Consensus 263 ~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~ 342 (446)
T PRK14353 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLG 342 (446)
T ss_pred EEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEEC
Confidence 355677888999999999999999999999999999999999999999999999998 899999999999987743
Q ss_pred -CCc--CCcccceeEECCCCEECCCcEE--------------cceEEcCCCEEcCC
Q 015225 366 -NGD--YNAKLGITILGEAVTVEDEVVV--------------INSIVLPNKVLNVS 404 (411)
Q Consensus 366 -~~~--~~~~~~~~~i~~~~~i~~~~~v--------------~~~~i~~~~~v~~~ 404 (411)
+.. +...++.++||+++.|+.++++ .+|.||++++|..+
T Consensus 343 ~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 398 (446)
T PRK14353 343 EGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP 398 (446)
T ss_pred CCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence 111 2223445788888888887543 35566666555543
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=88.32 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=66.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~ 365 (411)
..+.+.++++||+++.|++++.|.++++||++|.||. .|.+|+|++++.++++++|.+++|++++.||+++.+.+
T Consensus 22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 4567778889999999999999998999999999975 67899999999999999999999999999999988765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=89.23 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=73.4
Q ss_pred cEECCCCEECCCCEECC--CcEECCCcEECCCcEEEee---EECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCc
Q 015225 297 VYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISC---IVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
++||+++.|++++.|.+ ++.||++|.|+++|.|.++ .+..++.+.......+++|++++.|++++.+..+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~----- 76 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----- 76 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCC-----
Confidence 56888888888888887 8999999999999999854 3334444444455567888888888888888776
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.|++++.|++++.|.. .+.+++++.
T Consensus 77 ----~~ig~~~~i~~~~~v~~-~i~~~~i~~ 102 (109)
T cd04647 77 ----VTIGDGAVVGAGSVVTK-DVPPNSIVA 102 (109)
T ss_pred ----CEECCCCEECCCCEEee-ECCCCCEEE
Confidence 88899999988888863 466666653
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=98.68 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=58.2
Q ss_pred CcEEcCCcEECCCCEECCCCEEC------CCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIG------PNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~------~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-- 348 (411)
..++++.++||++++|+++++|+ +.+.||++++|-+.+.|+ ..+||++|+|.+++++..
T Consensus 21 ~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT 100 (260)
T COG1043 21 DVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGT 100 (260)
T ss_pred CCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccc
Confidence 33444444444444444444444 344455555444444443 267777777777777641
Q ss_pred ------eEECCCCEE------CCCcEEecCCc--CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCC
Q 015225 349 ------SIIGWKSSL------GRWARVQGNGD--YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 349 ------s~i~~~~~i------g~~~~i~~~~~--~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~ 406 (411)
+.||+++.+ +.+|+|++.-- ++.++ |++.||+.+.||-.+-| ..|.+|-.+-|..++|
T Consensus 101 ~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVp 180 (260)
T COG1043 101 VQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVP 180 (260)
T ss_pred cCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCC
Confidence 234433222 22222221100 11222 33666666666655433 4677777777777877
Q ss_pred Cc
Q 015225 407 EE 408 (411)
Q Consensus 407 ~~ 408 (411)
|=
T Consensus 181 Py 182 (260)
T COG1043 181 PY 182 (260)
T ss_pred Ce
Confidence 63
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-10 Score=89.34 Aligned_cols=76 Identities=28% Similarity=0.310 Sum_probs=49.2
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----------------eeEECCCCEECCCcEEE-eeEEC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----------------SCIVLDDVEIKENAVVL-NSIIG 352 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----------------~~~i~~~~~i~~~~~i~-~s~i~ 352 (411)
.+.+.++++||+++.|++++.|.+++.||++|.|++++.+. +++|+++|.|++++.+. ++.|+
T Consensus 10 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig 89 (119)
T cd03358 10 NVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIG 89 (119)
T ss_pred CcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEEC
Confidence 45566667777777777777776677777777777777664 35566666666666665 45566
Q ss_pred CCCEECCCcEEec
Q 015225 353 WKSSLGRWARVQG 365 (411)
Q Consensus 353 ~~~~ig~~~~i~~ 365 (411)
+++.|++++.+..
T Consensus 90 ~~~~i~~~~~v~~ 102 (119)
T cd03358 90 EYALVGAGAVVTK 102 (119)
T ss_pred CCCEEccCCEEeC
Confidence 6666665555544
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.2e-10 Score=93.73 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCEECCCCEECC--CcEECCCcEECCCcEEEe----eEECCCCEECCCcEEEe-------------eEECCCCEECCCc
Q 015225 301 PSAKVHPTAKIGP--NVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVLN-------------SIIGWKSSLGRWA 361 (411)
Q Consensus 301 ~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-------------s~i~~~~~ig~~~ 361 (411)
.+..|+..+.|.+ ++.||+++.|+++|.|.. ++||++|.|+++|+|.. ++|++++.|++++
T Consensus 6 ~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 85 (161)
T cd03359 6 SGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENC 85 (161)
T ss_pred CCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCC
Confidence 3444555555543 567777777777777763 57888888888888864 3677888888777
Q ss_pred EEecCCcCCccc-ceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 362 RVQGNGDYNAKL-GITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 362 ~i~~~~~~~~~~-~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
.+... .+ ..+.|+++++|+.++.+ .++.+++++.|..+
T Consensus 86 ~i~~~-----~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 86 VVNAA-----QIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred EEEee-----EEcCCcEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 76540 00 00334444444444444 35555666666555
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-10 Score=96.26 Aligned_cols=91 Identities=25% Similarity=0.356 Sum_probs=55.0
Q ss_pred cEECCCCEECCCCEECC--CcEECCCcEECCCcEEEeeEECCCCEECCC---cEEEeeEECCCCEECCCcEEecCCcCCc
Q 015225 297 VYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISCIVLDDVEIKEN---AVVLNSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~---~~i~~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
+.|++++.|++++.|.. +++|+++|.||++|.| +++|+++.. .....++||++|.||+++.+.++
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~----- 131 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN----- 131 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC-----
Confidence 34444444444444432 2444444444444444 333333321 11235689999999999998888
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
++||++++|+++++|... +.+++++.
T Consensus 132 ----v~IG~~~~Iga~s~V~~d-vp~~~~~~ 157 (162)
T TIGR01172 132 ----IEVGENAKIGANSVVLKD-VPPGATVV 157 (162)
T ss_pred ----cEECCCCEECCCCEECCC-CCCCCEEE
Confidence 889999999988888543 66676653
|
Cysteine biosynthesis |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-10 Score=95.26 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=51.2
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEe---------eEECCCCEECCCcEEE-eeEECCCCEE
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLIS---------CIVLDDVEIKENAVVL-NSIIGWKSSL 357 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~s~i~~~~~i 357 (411)
+..+.+.+.||+++.|++ +++|++++.||+||.|++++.|.. ++||++|.|+.+++|. +++||+++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 456666666777776654 366666677777777777777763 3677777777777766 4666666666
Q ss_pred CCCcEEecC
Q 015225 358 GRWARVQGN 366 (411)
Q Consensus 358 g~~~~i~~~ 366 (411)
|+++.+..+
T Consensus 141 ga~s~V~~d 149 (162)
T TIGR01172 141 GANSVVLKD 149 (162)
T ss_pred CCCCEECCC
Confidence 666666554
|
Cysteine biosynthesis |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-10 Score=86.67 Aligned_cols=89 Identities=25% Similarity=0.395 Sum_probs=62.5
Q ss_pred EECCCCEECCCCEECC--CcEECCCcEECCCcEEEeeEECCCCEECCCcE---EEeeEECCCCEECCCcEEecCCcCCcc
Q 015225 298 YIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISCIVLDDVEIKENAV---VLNSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
.|++++.|++++.|.. .++||+++.||++|.| ++++.|++++. +.+++|++++.|+.++.+..+
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~------ 72 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN------ 72 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc------
Confidence 4455555555555543 4566777777777665 66777777775 568899999999999998887
Q ss_pred cceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 373 LGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.|+++++|++++.|... +.++.++
T Consensus 73 ---~~Ig~~~~i~~~~~i~~~-~~~~~~~ 97 (101)
T cd03354 73 ---ITIGDNVKIGANAVVTKD-VPANSTV 97 (101)
T ss_pred ---CEECCCCEECCCCEECcc-cCCCCEE
Confidence 888888888888877543 5555544
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-10 Score=91.40 Aligned_cols=86 Identities=26% Similarity=0.280 Sum_probs=51.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEE--EeeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV--LNSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i--~~s~i~~~~~ig~~~~i~~~~ 367 (411)
+.++.+.+.+|+++.|+++ .+++|++++.||++|.| +++|+||+.... ..+.||++|.||.++.+.++
T Consensus 41 g~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I-----~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~- 110 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTI-----RHGVTIGNRGADNMACPHIGNGVELGANVIILGD- 110 (146)
T ss_pred CcccCCCCEECCCeEECCC----CeEEECCCcEECCCCEE-----CCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCC-
Confidence 3444555566666666653 13445555555554433 444444443322 23577888888888877776
Q ss_pred cCCcccceeEECCCCEECCCcEEcce
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVINS 393 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~~~ 393 (411)
+.||++++|++++.|.++
T Consensus 111 --------v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 111 --------ITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred --------CEECCCCEECCCCEECCc
Confidence 778888888877777554
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-10 Score=110.45 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=69.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~ 364 (411)
...+.++++|...+.|++++.|+++++|+ +|.||++|.|. +|+||++|.|+.+|+|.+|+||++|.|+... +
T Consensus 253 ~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~- 329 (430)
T PRK14359 253 TIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-L- 329 (430)
T ss_pred eeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-e-
Confidence 44566777777777888888888888887 88889898884 5777888888888888888888777555532 2
Q ss_pred cCCc--CCcccceeEECCCCEECCCcEE
Q 015225 365 GNGD--YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 365 ~~~~--~~~~~~~~~i~~~~~i~~~~~v 390 (411)
.+.. +.+.++.|+||++|.||+++.+
T Consensus 330 ~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 330 NGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred ccccccccccccCCEECCCCEECCCceE
Confidence 1111 2334444888888888887543
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-10 Score=91.46 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=85.6
Q ss_pred CcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 296 DVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
+..+.-.+.|.+|++|++ ++.+|.+|+++.+|+|. +..||+++.|+++|++.-..|+..+++|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 445555667778888884 68999999999999997 47999999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
++.|+++ |++.+.|+|-+++++ +.+++.|-+++..+
T Consensus 113 naviGrr---------CVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 113 NAVIGRR---------CVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred ceeEcCc---------eEhhhheeccCCcccCcccccCCceEEcCC
Confidence 9999998 999999999999988 57777776666553
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=95.51 Aligned_cols=92 Identities=25% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCcEEcCCcEECCCCEECCC--CEECCCcEECCCcEECCCcEEE---------eeEECCCCEECCCcEEE-eeEECCCCE
Q 015225 289 TSATIAGDVYIHPSAKVHPT--AKIGPNVSISANVRVGAGVRLI---------SCIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~--~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
.+..|++.+.||++.+|+++ .+|++.++||++|.|..+++|+ +-+||+++.||.|+.|- +-.||+++.
T Consensus 66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~ak 145 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAK 145 (194)
T ss_pred cceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCE
Confidence 46677777778888877763 4555555555555555555554 23555555555555554 455555555
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
||+++++..+.++++ +++|--+++
T Consensus 146 IGA~sVVlkdVP~~~----tvvGvPAri 169 (194)
T COG1045 146 IGAGSVVLKDVPPNA----TVVGVPARV 169 (194)
T ss_pred ECCCceEccCCCCCc----eEecCcceE
Confidence 555555555444444 444444443
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=91.07 Aligned_cols=173 Identities=15% Similarity=0.153 Sum_probs=118.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++..|||+|.| .++|... |.+.+++|+|||.|+++.+...+-+++|+|.+. .+.+.+.- +++|.+
T Consensus 1 ~~~~iAiIpAR~--gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A----~~ygak 66 (228)
T COG1083 1 MMKNIAIIPARG--GSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEA----KKYGAK 66 (228)
T ss_pred CcceEEEEeccC--CCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHH----HHhCcc
Confidence 788899999999 8888854 999999999999999999999877888887664 23343333 335666
Q ss_pred eEEeeCCC-CCC---ChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 81 VRYLKEDK-PHG---SAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 81 i~~v~~~~-~~g---~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
+.+.+..+ ..+ +..+++++.+.++. ..+.++++++-.+. ..+|++.++.+.+...+..+.+++. +.. .|-
T Consensus 67 ~~~~Rp~~LA~D~ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~--e~~-p~k 142 (228)
T COG1083 67 VFLKRPKELASDRASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC--EHH-PYK 142 (228)
T ss_pred ccccCChhhccCchhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec--ccc-hHH
Confidence 65554332 112 23455666665542 23457778887774 6789999999999888888888876 322 222
Q ss_pred EEEEcCCCCceeEEeccCC-------CcccCcccceEEEeCHHHHH
Q 015225 155 ELIADPNTKELLHYTEKPE-------TFVSDLINCGVYVFTPDFFT 193 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~~-------~~~~~~~~~Giyi~~~~~~~ 193 (411)
.... .++++..+.+.++ -+.....+..+|+++.+.|-
T Consensus 143 ~f~~--~~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 143 AFSL--NNGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred HHHh--cCCceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 2222 3577888877652 13344557789999988763
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=93.49 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=28.1
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
.+.||++|.||.++.|..+ +.||++|+|+++++|... +.+++++-
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g---------v~Ig~~~~VgagavV~~~-vp~~~vv~ 162 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG---------VTIGDNSVIGAGSVVTKD-IPANVVAA 162 (169)
T ss_pred CcEeCCCEEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCcEEE
Confidence 3566666666666666665 666777777766666443 55555443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-10 Score=102.22 Aligned_cols=92 Identities=23% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEE---------eeEECCCCEECCCcEEE-eeEECCCCE
Q 015225 289 TSATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLI---------SCIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
.+..|++.+.||+++.|++ +++|+.+++||++|.|..+++++ +++||++|.||.+++|. +++||+++.
T Consensus 159 ~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~ 238 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAK 238 (294)
T ss_pred eeEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCE
Confidence 3567888889999998887 88999889999999999998886 47999999999999995 889999999
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
||+++.|..+.++.. ++.|..+++
T Consensus 239 IGAgSVV~kdVP~~~----~v~G~PAki 262 (294)
T PLN02694 239 IGAGSVVLIDVPPRT----TAVGNPARL 262 (294)
T ss_pred ECCCCEECCcCCCCc----EEEccCcEE
Confidence 999988887544444 555554443
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-10 Score=91.72 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=62.6
Q ss_pred CCCcEEcCCcEECC--CCEECCCCEECCCcEECCCcEECCCcEE--EeeEECCCCEECCCcEEE-eeEECCCCEECCCcE
Q 015225 288 ITSATIAGDVYIHP--SAKVHPTAKIGPNVSISANVRVGAGVRL--ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWAR 362 (411)
Q Consensus 288 ~~~~~~~~~~~i~~--~~~v~~~~~i~~~~~ig~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~ 362 (411)
+..+.+++++.|++ ++.|++++.|+.++.|+.+|.||+.+.. ..+.||++|.||.++.+. ++.||+++.||+++.
T Consensus 45 ~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~ 124 (146)
T PRK10191 45 QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSV 124 (146)
T ss_pred CCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCE
Confidence 45677888888888 5788888888888888888888766443 245889999999998888 688888888888888
Q ss_pred EecC
Q 015225 363 VQGN 366 (411)
Q Consensus 363 i~~~ 366 (411)
+..+
T Consensus 125 V~~d 128 (146)
T PRK10191 125 VLDS 128 (146)
T ss_pred ECCc
Confidence 8774
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=94.81 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=47.8
Q ss_pred eeEECCCCEECCCcEEE---eeEECCCCEECCCcEEecCCcCC------cccceeEECCCCEECCCcEE-------cceE
Q 015225 331 SCIVLDDVEIKENAVVL---NSIIGWKSSLGRWARVQGNGDYN------AKLGITILGEAVTVEDEVVV-------INSI 394 (411)
Q Consensus 331 ~~~i~~~~~i~~~~~i~---~s~i~~~~~ig~~~~i~~~~~~~------~~~~~~~i~~~~~i~~~~~v-------~~~~ 394 (411)
+..||++|.|++++.|. ..+||++|.|++++.|..+.+.. ...+..+||++++||.+++| .+++
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 35667777777777775 46777777777777776544321 11233555666665555544 4566
Q ss_pred EcCCCEEcCCCCCc
Q 015225 395 VLPNKVLNVSVQEE 408 (411)
Q Consensus 395 i~~~~~v~~~~~~~ 408 (411)
|+++++|.+++|+.
T Consensus 151 Iga~svV~~~v~~~ 164 (182)
T PRK10502 151 VGARSSVFKSLPAN 164 (182)
T ss_pred ECCCCEEecccCCC
Confidence 66667666766654
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-10 Score=102.83 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=41.6
Q ss_pred cEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 291 ATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
..|++++.||+++.+++ +++|+++++||++|.|+.+++|++. +......+++||++|.||.++.|.++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~--------g~~~g~~~piIGd~V~IGagA~Ilgg-- 296 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT--------GKQSGDRHPKIGDGVLIGAGTCILGN-- 296 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc--------cccCCccCceeCCCeEECCceEEECC--
Confidence 34555555555555554 3444444555555555544444321 00111224555566666666555554
Q ss_pred CCcccceeEECCCCEECCCcEE
Q 015225 369 YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||++++||++++|
T Consensus 297 -------V~IGdga~IGAgSVV 311 (360)
T PLN02357 297 -------ITIGEGAKIGAGSVV 311 (360)
T ss_pred -------eEECCCCEECCCCEE
Confidence 555666666655555
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=102.29 Aligned_cols=93 Identities=25% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCcEEcCCcEECC--CCEECCCCEECCCcEECCCcEECCC---cEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCc
Q 015225 288 ITSATIAGDVYIHP--SAKVHPTAKIGPNVSISANVRVGAG---VRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWA 361 (411)
Q Consensus 288 ~~~~~~~~~~~i~~--~~~v~~~~~i~~~~~ig~~~~i~~~---~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~ 361 (411)
...+.++.++++.. +++|+++++|+.++.|+.+|+||.. ....+++||++|.||.|+.|. +++||+++.||.++
T Consensus 230 ~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgS 309 (360)
T PLN02357 230 HPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGS 309 (360)
T ss_pred CCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCC
Confidence 35778888888875 6788888888888888888888753 223468899999999999886 89999999999999
Q ss_pred EEecCCcCCcccceeEECCCCEE
Q 015225 362 RVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
.|..+.+++. +++|.-+++
T Consensus 310 VV~~dVP~~~----~v~G~PArv 328 (360)
T PLN02357 310 VVLKDVPPRT----TAVGNPARL 328 (360)
T ss_pred EECcccCCCc----EEECCCeEE
Confidence 9988655555 556655554
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=101.35 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=42.7
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~ 367 (411)
+..|++.+.||+++.|++ +++|+.+++||++|.|..+++|+.+ . ....-.+.+||++|.||.++.|.++
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~-----g---~~~g~r~p~IGd~V~IGagA~IlG~- 275 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGT-----G---KETGDRHPKIGDGALLGACVTILGN- 275 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCc-----C---CcCCCCCcEECCCCEEcCCCEEeCC-
Confidence 445555566666666653 4444444444444444444444310 0 0000013456666666666666655
Q ss_pred cCCcccceeEECCCCEECCCcEE
Q 015225 368 DYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||+++.||+|++|
T Consensus 276 --------V~IGd~aiIGAGSVV 290 (355)
T PLN02739 276 --------ISIGAGAMVAAGSLV 290 (355)
T ss_pred --------eEECCCCEECCCCEE
Confidence 666666666666665
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=80.19 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=24.8
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEee
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISC 332 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~ 332 (411)
+|++++.|++++.|.+++.||++|.|+++|.|.++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 56777777777777666777777777777777653
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=98.24 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEe---------eEECCCCEECCCcEEE-eeEECCCCE
Q 015225 289 TSATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLIS---------CIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
.+..+++.+.||+++.|++ +.+|+.++.||++|.|..+++|++ ++||++|.||.||+|. ++.||+++.
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence 4678888888999888884 678888899999999999988873 6889999999988887 788888888
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
||+++.|..+.++++ ++.|..+++
T Consensus 220 IGAgSvV~~dVp~~~----~v~G~PArv 243 (273)
T PRK11132 220 IGAGSVVLQPVPPHT----TAAGVPARI 243 (273)
T ss_pred ECCCCEECcccCCCc----EEEecCcEE
Confidence 888888877544444 555655554
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=96.61 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=47.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCc-EECCCcEEEeeEECCCCEECCCcEEE-e--------------eEEC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANV-RVGAGVRLISCIVLDDVEIKENAVVL-N--------------SIIG 352 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~-~i~~~~~i~~~~i~~~~~i~~~~~i~-~--------------s~i~ 352 (411)
.+.+|.+...+--+|.+++|++|.++++|..|+ +||+. .| ++.|.++|.||++|.|. + +.||
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IG 229 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIG 229 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEEC
Confidence 345555544455555555555555555555555 45553 33 34445555544444443 2 4555
Q ss_pred CCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 353 WKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 353 ~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++|.||.+|.| + ..||++|+||+|++|
T Consensus 230 e~~~IGagA~I--G---------I~IGd~~VVGAGaVV 256 (319)
T TIGR03535 230 ERCLLGANSGL--G---------ISLGDDCVVEAGLYV 256 (319)
T ss_pred CCcEECCCCEE--C---------eEECCCCEECCCCEE
Confidence 55555555555 2 566666666666655
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=106.84 Aligned_cols=81 Identities=11% Similarity=0.200 Sum_probs=71.0
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECC-------------------CCEE
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW-------------------KSSL 357 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~-------------------~~~i 357 (411)
+.+.+.+.+. ++.|. +++||++|.| ++|.|.+|+||++|+||++|.|.+|+|+. ++.|
T Consensus 293 ~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~I 369 (429)
T PRK02862 293 ARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGI 369 (429)
T ss_pred CCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEE
Confidence 3455555553 67776 6999999999 89999999999999999999999999976 6999
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|++|.|.+ |+|+++|.||+++.+
T Consensus 370 g~~~~i~~----------~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 370 GEGTTIKR----------AIIDKNARIGNNVRI 392 (429)
T ss_pred CCCCEEEE----------EEECCCcEECCCcEE
Confidence 99999988 899999999999988
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=92.09 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=24.8
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
..||++|.||.+|.|..+ +.||++++|+++++|... +.+++++
T Consensus 130 v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-i~~~~i~ 172 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVV 172 (183)
T ss_pred eEECCCcEECCCCEECCC---------CEECCCCEECCCCEEccc-cCCCcEE
Confidence 456666666666666555 666666666666666332 3444444
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=97.23 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeE-ECCCCE---ECCCcEEE-eeEECCCCEECCCcEEecCCcCCcc
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCI-VLDDVE---IKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~-i~~~~~---i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
+++++.|++.++|+.+++||++|+|.+++.|+ ++. +|++++ |-.+++|+ +|.||+++.| ++.+.++...+
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~-- 250 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIV-- 250 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCcee--
Confidence 44444444444444455555555555544443 122 333333 33333333 3334444444 22332221111
Q ss_pred cceeEECCCCEECCCcEE-----cceEEcCCCEEcCCCC
Q 015225 373 LGITILGEAVTVEDEVVV-----INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~~ 406 (411)
+.||++|.||.++.| .+|+|++|++|..+.+
T Consensus 251 ---V~IGe~~lIGagA~IGI~IGd~~iIGAGavVtagTk 286 (341)
T TIGR03536 251 ---ISVGEGCLLGANAGIGIPLGDRCTVEAGLYITAGTK 286 (341)
T ss_pred ---EEECCCcEECCCCEEeeEECCCCEECCCCEEeCCcE
Confidence 556666666666655 5788888888877654
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=102.26 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=80.4
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
.-.|......-|-+.+.+++.+. +|.|+.+|+|. + .|.||+|+.+++|+++|.|.+|+|+.+|.||++|.|..
T Consensus 273 ~w~IyT~~~~~pPak~~~~s~v~-nSLv~~GciI~-G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~---- 345 (393)
T COG0448 273 NWPIYTKNKNLPPAKFVNDSEVS-NSLVAGGCIIS-G-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRR---- 345 (393)
T ss_pred CCceeecCCCCCCceEecCceEe-eeeeeCCeEEE-e-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEE----
Confidence 33455555567778888888876 89999999996 4 99999999999999999999999999999999999999
Q ss_pred CcccceeEECCCCEECCCcEEcce
Q 015225 370 NAKLGITILGEAVTVEDEVVVINS 393 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v~~~ 393 (411)
++|.++|.|++|++|.+.
T Consensus 346 ------aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 346 ------AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ------EEeCCCcEeCCCcEEcCC
Confidence 999999999999999654
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=105.64 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=63.9
Q ss_pred CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+++||++|.| ++|.|.+|+|+++|+|+++|.|.+|+|+++|.||++++|.+ |+|+++++|+++++|.
T Consensus 327 ~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~----------~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 327 NSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR----------CVIDRGCVIPEGMVIG 393 (425)
T ss_pred eCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee----------EEECCCCEECCCCEEC
Confidence 8999999999 79999999999999999999999999999999999999987 9999999999998774
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=99.82 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCcEEcCCcEEC--CCCEECCCCEECCCcEECCCcEECCCcEE---EeeEECCCCEECCCcEEE-eeEECCCCEECCCc
Q 015225 288 ITSATIAGDVYIH--PSAKVHPTAKIGPNVSISANVRVGAGVRL---ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWA 361 (411)
Q Consensus 288 ~~~~~~~~~~~i~--~~~~v~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~ 361 (411)
...++++.+++|+ .+++|+++|+|+.++.|..+|+||....- .+.+||++|.||.|++|. ++.||+++.||+++
T Consensus 209 ~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGS 288 (355)
T PLN02739 209 HPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGS 288 (355)
T ss_pred CCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCC
Confidence 4566777777774 47788888888888888888888743211 246778888888888887 67888888888887
Q ss_pred EEecCCcCCcccceeEECCCCEE
Q 015225 362 RVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
.|..+.++++ ++.|..+++
T Consensus 289 VV~kDVP~~s----tvvG~PAri 307 (355)
T PLN02739 289 LVLKDVPSHS----MVAGNPAKL 307 (355)
T ss_pred EECCCCCCCc----EEEecCCEE
Confidence 7776544444 455544443
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=94.80 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=58.9
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCc-EEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec----CCc
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGV-RLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG----NGD 368 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~----~~~ 368 (411)
..++.|.+.+.|--||.|+++++|..+++|..++ +|++++| +++|+++ ++||+++.|+.++.|.+ +..
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~iI--~g~I~Hd-----vvIGd~~~IgpGvsI~G~LsGg~~ 223 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGASMV--EGRISAG-----VVVGDGSDIGGGASIMGTLSGGGK 223 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCceE--EEEEccC-----CEECCCCEECCCceecceecCCCc
Confidence 3455555555555555555555555555555555 4544433 2344443 45666666666666333 211
Q ss_pred CCcccceeEECCCCEECCCcEE-----cceEEcCCCEEcCCCCC
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-----INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~~~ 407 (411)
.+ +.||++|.||.++.| .+|+|++|++|.++.|-
T Consensus 224 ~p-----V~IGe~~~IGagA~IGI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 224 EV-----ISIGERCLLGANSGLGISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred cc-----EEECCCcEECCCCEECeEECCCCEECCCCEEeCCeEE
Confidence 11 455666666666554 58999999999888763
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=77.42 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=39.7
Q ss_pred EECCCcEECCCcEEEe-eEECCCCEECCCcEEEe---------eEECCCCEECCCcEEecCCcCCcccceeEECCCCEEC
Q 015225 316 SISANVRVGAGVRLIS-CIVLDDVEIKENAVVLN---------SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE 385 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~ 385 (411)
+||+++.|++++.|.+ ++||++|.|+++|.|.+ ..|++++.++.++.+..+ +.|++++.|+
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~---------~~ig~~~~i~ 72 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG---------VKIGDNAVIG 72 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCC---------CEECCCCEEC
Confidence 4556666666666654 67777777888887774 455555555555555554 5555555555
Q ss_pred CCcE
Q 015225 386 DEVV 389 (411)
Q Consensus 386 ~~~~ 389 (411)
+++.
T Consensus 73 ~~s~ 76 (78)
T cd00208 73 AGAV 76 (78)
T ss_pred cCcE
Confidence 4443
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-09 Score=90.58 Aligned_cols=96 Identities=18% Similarity=0.297 Sum_probs=69.2
Q ss_pred CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEE---eeEECCCCEECCCcEEecCCcC----------------
Q 015225 314 NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVL---NSIIGWKSSLGRWARVQGNGDY---------------- 369 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~---~s~i~~~~~ig~~~~i~~~~~~---------------- 369 (411)
+..+|+++.++.+|++. ...||++|.|+.++.|. ++.||++|.|++++.|.+..+.
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 44455556666666653 47899999999999987 6899999999999999864320
Q ss_pred --CcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 370 --NAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 370 --~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
....+.++||++++|+.++.+ .+|+|+++++|.+++|+..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~ 171 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENT 171 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCc
Confidence 112244677777777766655 5788889999988887653
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=94.37 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=63.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCCCEECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWKSSLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~ 359 (411)
++.++-.+||++|+++.+++.|-=++.++++|+|.-+++++ ...||+||.||-++.|.+ .+|+++|.||+
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 44455555555555555544444455666666665555555 357788888888888864 48888999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++.+..| +.+|++|+|++|++|
T Consensus 194 ns~~veG---------V~vGdg~VV~aGv~I 215 (271)
T COG2171 194 NSEVVEG---------VIVGDGCVVAAGVFI 215 (271)
T ss_pred ccceEee---------eEeCCCcEEecceEE
Confidence 8866666 888888888888877
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=101.54 Aligned_cols=89 Identities=27% Similarity=0.386 Sum_probs=72.2
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCE
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVT 383 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~ 383 (411)
+.. +.|.++++||++|.|+.++.|. +++||++|+|++++.|.+|+|+++|.|++++.+.+ |+|+++|+
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~----------sIi~~~~~ 321 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD----------SIIGENCK 321 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee----------eEEcCCcE
Confidence 444 7777888888888888888888 58899999999999999999999999999999999 89999999
Q ss_pred ECC-----CcEE-cceEEcCCCEEcCC
Q 015225 384 VED-----EVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 384 i~~-----~~~v-~~~~i~~~~~v~~~ 404 (411)
||+ .+.+ .+|.+.+|.++..+
T Consensus 322 ig~~~~i~d~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 322 IGASLIIGDVVIGINSEILPGVVVGPG 348 (358)
T ss_pred ECCceeecceEecCceEEcCceEeCCC
Confidence 985 1222 35555555555543
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=104.21 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=66.5
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.++++||++|.|+ ++.|.+|+||++|+|+++|+|.+|+|+++|.||++|+|.+ |+|++++.|++++++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i 380 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR----------AILDKNVVVPPGATI 380 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe----------eEECCCCEECCCCEE
Confidence 34579999999998 9999999999999999999999999999999999999988 999999999999888
Q ss_pred cc
Q 015225 391 IN 392 (411)
Q Consensus 391 ~~ 392 (411)
.+
T Consensus 381 ~~ 382 (407)
T PRK00844 381 GV 382 (407)
T ss_pred CC
Confidence 55
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-10 Score=105.22 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=76.8
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccC-------CCCcEEEEecccchHHHHHHHhhhc
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRI-------PNLAQIFLIGFYEEREFALYVSSIS 74 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-------~gi~~I~Iv~~~~~~~i~~~~~~~~ 74 (411)
-+|+|||| .||||+ ...||+|+||+ |+|++++.++++..+ .++..+++.+.+..+.+++++++..
T Consensus 2 a~viLaGG--~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 58999999 999996 48999999999 999999999999762 2577777777777788999999853
Q ss_pred ccCCcceEEeeC-CCCCCChHHHHHHHHHhhccC-CCeEEEEcCCcccCCChHHHHHHHHhcCCe
Q 015225 75 NELKVPVRYLKE-DKPHGSAGGLYYFRDMIMEEN-PSHIILLNCDVCCSFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 75 ~~~~~~i~~v~~-~~~~g~~~~l~~~~~~i~~~~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~ 137 (411)
... ..+.+..| ..+..+.++... ..... ..+...-+||.+.......+++.|++++..
T Consensus 77 ~~~-~~v~~f~Q~~~P~~~~~~~~~----~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~ 136 (266)
T cd04180 77 QKN-SYVITFMQGKLPLKNDDDARD----PHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYR 136 (266)
T ss_pred CCC-CceEEEEeCCceEEeCCCCcc----cCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCE
Confidence 112 23333333 222223322221 11000 133444455555544445555555555544
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-09 Score=93.57 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=62.9
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeEECC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITILGE 380 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~ 380 (411)
+.|.|+++++.+++|++|++|-..+.|+ ++.++.++.|.-+++++ ..+||+||+||.++.|.+ .-.+.....++|++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G-VLep~~a~Pv~Igd 187 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG-VLEPLQANPVIIGD 187 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE-EecCCCCCCeEECC
Confidence 4555555555556666666666556665 56666666666666666 346777777777776655 11222223367777
Q ss_pred CCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 381 AVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 381 ~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
+|.||+++++ .+|+|+.|..|..++|.
T Consensus 188 ncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 188 NCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred ccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 7777777532 56777777777776654
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=88.85 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=42.5
Q ss_pred CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEeeE-------ECCCCEECCCcEEecCCcCCcccceeEECCCCE
Q 015225 314 NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLNSI-------IGWKSSLGRWARVQGNGDYNAKLGITILGEAVT 383 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~s~-------i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~ 383 (411)
++.||+++.|+.++.|. +.+||++|.|+.+|+|..+. ...+..++..+.|+++ +.||.+++
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~---------~~Ig~~a~ 132 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDN---------VWIGGGVI 132 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCC---------EEECCCCE
Confidence 34444444444444443 34566666666666664210 0011122233333333 44444455
Q ss_pred ECCCcEE-cceEEcCCCEEcCCCCCc
Q 015225 384 VEDEVVV-INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 384 i~~~~~v-~~~~i~~~~~v~~~~~~~ 408 (411)
|..++.| .+|+|++|++|.+++|+.
T Consensus 133 I~~gv~Ig~~~~VgagavV~~~vp~~ 158 (169)
T cd03357 133 ILPGVTIGDNSVIGAGSVVTKDIPAN 158 (169)
T ss_pred EeCCCEECCCCEECCCCEEccccCCC
Confidence 5555555 467777777777777654
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=80.44 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=55.6
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEeeEECCCCEECCCcEE-EeeEECCCCEECCCcEEecCCcCCcc
Q 015225 296 DVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLISCIVLDDVEIKENAVV-LNSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
+..||+++.|+++++|. +.+.||++|.|++++.|... .+.........+ ....|+++|.||.++.+..+
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g------ 74 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPG------ 74 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCC------
Confidence 34567777777777774 46788888888888777421 111111112222 25567777777777777666
Q ss_pred cceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 373 LGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.||+++.|++++.|.++ +.+++++
T Consensus 75 ---~~Ig~~~~i~~gs~v~~~-~~~~~~~ 99 (107)
T cd05825 75 ---VTIGEGAVVGARSVVVRD-LPAWTVY 99 (107)
T ss_pred ---CEECCCCEECCCCEEeCc-CCCCCEE
Confidence 677777777777666443 3444444
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=88.11 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=19.4
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEcCCCCCc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~ 408 (411)
+.||.+|.|.+++.| .+|+|++|++|.+++|+-
T Consensus 136 v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~ 169 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDN 169 (183)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEEccccCCC
Confidence 444444444444444 457777777777777653
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=88.25 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=54.5
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEe-------------------eEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLIS-------------------CIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~-------------------~~i~~~~~i~~~~~i~-~s~i 351 (411)
+.++.||+++.|+.+|+|. .++.||++|.|+++|.|.. .+||++|.||.+++|. ++.|
T Consensus 73 g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~I 152 (203)
T PRK09527 73 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTI 152 (203)
T ss_pred CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEE
Confidence 4678888888888888885 3589999999999999961 5677777777777766 5666
Q ss_pred CCCCEECCCcEEecC
Q 015225 352 GWKSSLGRWARVQGN 366 (411)
Q Consensus 352 ~~~~~ig~~~~i~~~ 366 (411)
|++++||+++.+..+
T Consensus 153 G~~~vIgagsvV~kd 167 (203)
T PRK09527 153 GDNSVIGAGSVVTKD 167 (203)
T ss_pred CCCCEECCCCEEccc
Confidence 666666666666553
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=87.55 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=68.3
Q ss_pred cEEcCCcEECCCCEECCCCEECC--CcEECCCcEECCCcEEEeeEECCCCEECCCcE---EEeeEECCCCEECCCcEEec
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISCIVLDDVEIKENAV---VLNSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~s~i~~~~~ig~~~~i~~ 365 (411)
.+..-++-|+|+|+||++..|.- +++||+.+.||++|.| .+++++|..-. -.+-.|+++|.||++++|.+
T Consensus 62 ~~~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG 136 (194)
T COG1045 62 SRFLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILG 136 (194)
T ss_pred HHhhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEc
Confidence 34556788999999999999983 5788888888888777 55555553211 23569999999999999999
Q ss_pred CCcCCcccceeEECCCCEECCCcEE
Q 015225 366 NGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 366 ~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+ ..||++++||++++|
T Consensus 137 ~---------I~IGd~akIGA~sVV 152 (194)
T COG1045 137 N---------IEIGDNAKIGAGSVV 152 (194)
T ss_pred c---------eEECCCCEECCCceE
Confidence 7 999999999999888
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=79.60 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=52.0
Q ss_pred CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEee----EECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 314 NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLNS----IIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~s----~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
+..||++|.|++++.|. ...||++|.|++++.|... ...+...+...+.|+++ |.|+.++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~---------~~ig~~~~i~~ 73 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDG---------AWVAAEAFVGP 73 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCC---------CEECCCCEECC
Confidence 34566666666666665 3677888888888877521 11112223333444444 55555555555
Q ss_pred CcEE-cceEEcCCCEEcCCCCCcc
Q 015225 387 EVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 387 ~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
++.| .+|+|++++.|.+++|+..
T Consensus 74 g~~Ig~~~~i~~gs~v~~~~~~~~ 97 (107)
T cd05825 74 GVTIGEGAVVGARSVVVRDLPAWT 97 (107)
T ss_pred CCEECCCCEECCCCEEeCcCCCCC
Confidence 5555 5788888888888887643
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=89.52 Aligned_cols=161 Identities=17% Similarity=0.319 Sum_probs=104.1
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccCC-----------CCcEEEEecc-cchHHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRIP-----------NLAQIFLIGF-YEEREFA 67 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~~-----------gi~~I~Iv~~-~~~~~i~ 67 (411)
++.+|+|||| .|||| +...||+|+|++ |+|++++.++.+..+. .+.-+ |.++ +..+.+.
T Consensus 15 ~va~viLaGG--~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~-imtS~~t~~~t~ 88 (323)
T cd04193 15 KVAVLLLAGG--QGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWY-IMTSEATHEETR 88 (323)
T ss_pred CEEEEEECCC--ccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEE-EEcChhHhHHHH
Confidence 5789999999 99999 458899999998 7999999999998741 24444 5444 6677889
Q ss_pred HHHhhhcccCCc---ceEEeeCC---------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcCCc
Q 015225 68 LYVSSISNELKV---PVRYLKED---------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNCDV 118 (411)
Q Consensus 68 ~~~~~~~~~~~~---~i~~v~~~---------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~ 118 (411)
+++++. +.+|. .+.+..|. .+.|.++.... .++.+....-+++.+...|.
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 999873 33444 44444321 13355544332 23344334468899999999
Q ss_pred cc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCceeEEeccC
Q 015225 119 CC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKELLHYTEKP 172 (411)
Q Consensus 119 i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~v~~~~e~~ 172 (411)
+. ...-..++-.+.+.++++.+-+.+.. .....-|.+.. | ..-.++++.+-|
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~ekvG~l~~~~-g~~~vvEysel~ 221 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKR-YPTEKVGVVVLVD-GKPQVVEYSEIS 221 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECC-CCCCceeEEEEEC-CeEEEEEeecCC
Confidence 64 22234566777788888776555431 12344455543 3 334577777654
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=98.89 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=54.9
Q ss_pred CEECCCCEECC----CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec
Q 015225 303 AKVHPTAKIGP----NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 303 ~~v~~~~~i~~----~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~ 365 (411)
+.|+++|+|++ +++||++|+|+++|.|.+|+|+++|.|+++|.|.+|+|++++.|+.+++|++
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 44455555544 8999999999999999999999999999999999999999999999988753
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=100.20 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=66.4
Q ss_pred CCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECC----------------C---CEECCCc
Q 015225 301 PSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW----------------K---SSLGRWA 361 (411)
Q Consensus 301 ~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~----------------~---~~ig~~~ 361 (411)
+++.+ .++.|.+ ++|+++|+|+ +|.|.+|+|+++|.|+++|+|.+|+++. + +.||++|
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 44555 4677764 9999999999 9999999999999999999999888855 2 3899999
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++.+ ++|+++++||+++.+
T Consensus 381 ~i~~----------~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 381 KIRN----------AIIDKNARIGKNVVI 399 (436)
T ss_pred EEcc----------eEecCCCEECCCcEE
Confidence 9986 899999999999887
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=77.11 Aligned_cols=34 Identities=32% Similarity=0.296 Sum_probs=17.0
Q ss_pred eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEe
Q 015225 331 SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 331 ~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
+++|+++|.|+.++.+. .+.|++++.|++++.+.
T Consensus 54 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 54 HPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred CCEECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 34455555555555555 24455554444444443
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=96.11 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=19.9
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEee
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s 349 (411)
+.+.+.|+++|.| .+++|+.+|.||++|.|.+|+|+++|+||++|+|.+|
T Consensus 251 i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~ 300 (353)
T TIGR01208 251 IRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDA 300 (353)
T ss_pred EcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeee
Confidence 3333344444444 2333433344444444444444444444444333333
|
Alternate name: dTDP-D-glucose synthase |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=77.86 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=7.9
Q ss_pred eEECCCCEECCCcEEE
Q 015225 332 CIVLDDVEIKENAVVL 347 (411)
Q Consensus 332 ~~i~~~~~i~~~~~i~ 347 (411)
+.||++|.|+++|.|.
T Consensus 22 v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 22 ITIGDNVLIGPNVTIY 37 (109)
T ss_pred eEECCCCEECCCCEEE
Confidence 4445555555555554
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-08 Score=96.62 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=59.6
Q ss_pred EEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 292 TIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.+++++.| +++.|+++|.|+ .+++|+++|.|+++|.|.+|+|+++|.|++++.+.+|+|++++.|++++++.+.
T Consensus 280 ~i~~~~~i-~~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 280 YYAENSKV-ENSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred EEcCCCEE-EEeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 34444444 334444444443 379999999999999999999999999999999999999999999999999663
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-09 Score=83.75 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=79.5
Q ss_pred CcEEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEEe--------------eEECCCCEECCCcEEEeeEEC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLIS--------------CIVLDDVEIKENAVVLNSIIG 352 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~s~i~ 352 (411)
.+.+++.+.|+++++|+|.+++- ++.+||+|+.|++.++|.| -+||.+....-+|...--.+|
T Consensus 20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvG 99 (190)
T KOG4042|consen 20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVG 99 (190)
T ss_pred ecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhc
Confidence 34578888999999999988886 6789999999999999864 688888888888888888899
Q ss_pred CCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 353 WKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 353 ~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
++.+|+..+.+++| +.+.++|.||+++.+.
T Consensus 100 d~NVieskayvg~g---------v~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 100 DRNVIESKAYVGDG---------VSVSSGCSVGAKCTVF 129 (190)
T ss_pred CcceEeeeeEecCC---------cEEcCCceeccceEEe
Confidence 99999999999888 8888888888887773
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.7e-07 Score=87.36 Aligned_cols=186 Identities=18% Similarity=0.278 Sum_probs=115.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccC-------------CCCcEEEEecccchHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRI-------------PNLAQIFLIGFYEEREF 66 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-------------~gi~~I~Iv~~~~~~~i 66 (411)
++.+|||||| .||||+. ..||+|+||+ |+|+++++++++..+ ..+.-+++.+.+..+.+
T Consensus 106 kvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 5889999999 9999975 8999999994 899999999998863 12454555555667888
Q ss_pred HHHHhhhcccCCc---ceEEeeCC----------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcC
Q 015225 67 ALYVSSISNELKV---PVRYLKED----------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNC 116 (411)
Q Consensus 67 ~~~~~~~~~~~~~---~i~~v~~~----------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~ 116 (411)
++++.+. ..+|. .|.+..|. .+.|.++.... .++.+...+-+++.+...
T Consensus 181 ~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 181 RQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 9999863 22332 23322211 13355543332 134444444688999999
Q ss_pred CcccCCC-hHHHHHHHHhcCC-eeEEEEEecCcccccceeEEEEcCCCCceeEEeccCCC-----------cccCcccce
Q 015225 117 DVCCSFP-LPDLLEAHKRYGG-MGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPET-----------FVSDLINCG 183 (411)
Q Consensus 117 D~i~~~~-l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~-----------~~~~~~~~G 183 (411)
|.+.... =..++-.+.+.++ ++.-.+.+. .....-|.+......-.|+++.|-+.. ......++.
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~--~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~ 337 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKR--EDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNIC 337 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecC--CCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceE
Confidence 9985322 2445566666665 543333333 333445665543022267888774311 113456789
Q ss_pred EEEeCHHHHHHhh
Q 015225 184 VYVFTPDFFTAIQ 196 (411)
Q Consensus 184 iyi~~~~~~~~l~ 196 (411)
.++|+.++++.+.
T Consensus 338 ~h~fsl~fl~~~~ 350 (482)
T PTZ00339 338 SHIFSLDFLKKVA 350 (482)
T ss_pred EEEEEHHHHHHHh
Confidence 9999999887653
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.7e-08 Score=86.63 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=84.2
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
.|||+|.+ .++||.. |.|.+++|+|||+|+++.+.+...+++|+|.+... .+.+.+.+ ++.++.+.
T Consensus 1 iaiIpAR~--gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~--~i~~~~~~----~g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG--GSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDE--EIDDIAEE----YGAKVIFR 66 (217)
T ss_dssp EEEEEE-S--SSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSH--HHHHHHHH----TTSEEEE-
T ss_pred CEEEecCC--CCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCH--HHHHHHHH----cCCeeEEc
Confidence 38999999 9999975 99999999999999999999987889998887643 35566654 45566555
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.....++......+...... ..+.++.+.||.++ +..+..+++.+.+..++
T Consensus 67 ~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 544433444443333444332 23478889999986 55689999999888765
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-09 Score=81.54 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=76.8
Q ss_pred CcEEcC---CcEECCCCEECCCCEECC------------CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCC
Q 015225 290 SATIAG---DVYIHPSAKVHPTAKIGP------------NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWK 354 (411)
Q Consensus 290 ~~~~~~---~~~i~~~~~v~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~ 354 (411)
++.|++ ++.+|+.++++.+++|++ +..||+++.|+++|++.-..||..+.+|.+++ ||.+
T Consensus 45 g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gknav-----iGrr 119 (184)
T KOG3121|consen 45 GVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAV-----IGRR 119 (184)
T ss_pred CcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecccee-----EcCc
Confidence 444444 477899999999999985 46899999999999998877777777777665 7788
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCCC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQE 407 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~~ 407 (411)
|++.+.|+|.++ +++...+.+++-+++.++=-..+-+++++.++
T Consensus 120 CVlkdCc~ild~---------tVlPpet~vppy~~~~g~p~~~~G~~P~ctq~ 163 (184)
T KOG3121|consen 120 CVLKDCCRILDD---------TVLPPETLVPPYSTIGGNPAQVVGTEPRCTQN 163 (184)
T ss_pred eEhhhheeccCC---------cccCcccccCCceEEcCCCceeeccCchhhHH
Confidence 899999888887 88888888887777743322222245555443
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-07 Score=77.07 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=56.6
Q ss_pred EECCCCEECC-CCEECC-CcEECCCcEECCCcEEEee--------E-----ECCCC-----EECCCcEEEeeEECCCCEE
Q 015225 298 YIHPSAKVHP-TAKIGP-NVSISANVRVGAGVRLISC--------I-----VLDDV-----EIKENAVVLNSIIGWKSSL 357 (411)
Q Consensus 298 ~i~~~~~v~~-~~~i~~-~~~ig~~~~i~~~~~i~~~--------~-----i~~~~-----~i~~~~~i~~s~i~~~~~i 357 (411)
.||+++.|++ .+.+.. .+.||++|.|++++.|... . ++++. ..........++|+++|.|
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 82 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWI 82 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEE
Confidence 3455555555 344432 5677777777777777432 0 01100 0111223346788888888
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
|.++.+..+ +.||+++.|+++++|... +.+++++
T Consensus 83 g~~~~i~~g---------v~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 83 GHGATILPG---------VTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCeEE
Confidence 888888777 888888888888887543 4555554
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-07 Score=84.23 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=53.0
Q ss_pred CCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 313 PNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
++++|.+++++.+.++|+ |..||.+++||+|+.+.+|||-+++.|.+++.+.. |+||.++.||..+.|.
T Consensus 287 gdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~----------sIigw~s~iGrWaRVe 356 (407)
T KOG1460|consen 287 GDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH----------SIIGWKSSIGRWARVE 356 (407)
T ss_pred eeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe----------eeecccccccceeeec
Confidence 344444444444444444 34457788889999999999999999999999999 9999999999887773
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=75.82 Aligned_cols=118 Identities=20% Similarity=0.245 Sum_probs=83.6
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch--HHHHHHHhhhcccCC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE--REFALYVSSISNELK 78 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~--~~i~~~~~~~~~~~~ 78 (411)
|+++.+||-|.= .++||.. |.|+|+++.|||.++|+++.....+++++|.++..+ +.+..++.+ .|
T Consensus 1 ~~~I~~IiQARm--gStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G 68 (241)
T COG1861 1 MSMILVIIQARM--GSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HG 68 (241)
T ss_pred CCcEEEEeeecc--cCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cC
Confidence 677777777776 6788865 999999999999999999999867889999887543 445555544 22
Q ss_pred cceEEeeCCCCCCCh-HHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 79 VPVRYLKEDKPHGSA-GGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~-~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.+.. |+. +.|.+....++....+.++=+.||.++ +.-++..++.|.+++++
T Consensus 69 --~~vfr-----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 --FYVFR-----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred --eeEec-----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 23322 343 344444444444445677788999986 34478899999888876
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=75.75 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCccCcccCC--cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee-CCCCCCChHHHHHHHHH
Q 015225 26 TPKPLFPLAG--QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK-EDKPHGSAGGLYYFRDM 102 (411)
Q Consensus 26 ~pK~llpi~g--~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~-~~~~~g~~~~l~~~~~~ 102 (411)
.+|+|++++| +|||+|+++.+.. .+++++|+++.... + ...+ +.++. .....|...++..+++.
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~~-~--------~~~~--~~~i~d~~~g~gpl~~~~~gl~~ 69 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQP-L--------PELP--APVLRDELRGLGPLPATGRGLRA 69 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCcc-c--------ccCC--CCEeccCCCCCCcHHHHHHHHHH
Confidence 4899999999 9999999998875 58999988865421 1 1112 23333 23345777777666654
Q ss_pred hhccCCCeEEEEcCCccc-C-CChHHHHHHHH
Q 015225 103 IMEENPSHIILLNCDVCC-S-FPLPDLLEAHK 132 (411)
Q Consensus 103 i~~~~~~~~lv~~~D~i~-~-~~l~~~l~~~~ 132 (411)
......+++++++||+++ + ..+..+++.+.
T Consensus 70 ~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 70 AAEAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred HHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 321225899999999986 3 34667666543
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-07 Score=85.57 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=67.2
Q ss_pred CEECCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCC
Q 015225 309 AKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDE 387 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 387 (411)
+.|.++..+.+-+.+|++|.|++ ++||.+|+|++|+.|.+|++..++.++.++-+.+ +++|.++.||.+
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s----------~ivg~~~~IG~~ 328 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISS----------SIVGWNVPIGIW 328 (371)
T ss_pred ccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHh----------hhccccccccCc
Confidence 33334444445555555555553 6669999999999999999999999999999988 899999999999
Q ss_pred cEE-cceEEcCCCEEcC
Q 015225 388 VVV-INSIVLPNKVLNV 403 (411)
Q Consensus 388 ~~v-~~~~i~~~~~v~~ 403 (411)
+.| ++|++|.+.+|..
T Consensus 329 ~~id~~a~lG~nV~V~d 345 (371)
T KOG1322|consen 329 ARIDKNAVLGKNVIVAD 345 (371)
T ss_pred eEEecccEeccceEEec
Confidence 988 6889998888765
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=73.11 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=14.7
Q ss_pred eeEECCCCEECCCcEEE-eeEECCCCEECCCcEE
Q 015225 331 SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARV 363 (411)
Q Consensus 331 ~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i 363 (411)
+++||++|.||.+|.|. ++.|++++.||+++.|
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V 106 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVV 106 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 34444444444444443 3444444444444333
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-05 Score=74.76 Aligned_cols=186 Identities=14% Similarity=0.202 Sum_probs=114.7
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCccc-CCcchhHhHHHHhccC---CC--CcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL-AGQPMIQHPISACKRI---PN--LAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~---~g--i~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
.++.+|.|||| .||||+- .-||.++++ .|+++++..++++..+ .| +.=++..+....+..+++++++.
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 35779999999 9999987 889999999 5679988888877543 13 22233333344566788888742
Q ss_pred cCCcceEEeeCC------------------------CCCCChHHH---HH--HHHHhhccCCCeEEEEcCCccc-CCChH
Q 015225 76 ELKVPVRYLKED------------------------KPHGSAGGL---YY--FRDMIMEENPSHIILLNCDVCC-SFPLP 125 (411)
Q Consensus 76 ~~~~~i~~v~~~------------------------~~~g~~~~l---~~--~~~~i~~~~~~~~lv~~~D~i~-~~~l~ 125 (411)
..+.++.+..|. .+.|.++.. +. .++.+....-+++.+.+.|.+. ..| .
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vD-p 230 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVD-L 230 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccC-H
Confidence 223333332211 122334332 22 1344444446899999999974 333 3
Q ss_pred HHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHHhh
Q 015225 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTAIQ 196 (411)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~l~ 196 (411)
.++.++.+.+++.++=+++.. .....-|.+.. | ..-+++++.+-|.. ....+.+++.++|+-+.++.+.
T Consensus 231 ~~lg~~~~~~~e~~~ev~~Kt-~~d~kgG~l~~~d-gk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~ 308 (469)
T PLN02474 231 KILNHLIQNKNEYCMEVTPKT-LADVKGGTLISYE-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
T ss_pred HHHHHHHhcCCceEEEEeecC-CCCCCccEEEEEC-CEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHh
Confidence 467777778888766655431 11222355543 3 33357788775532 2356779999999998877664
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.6e-07 Score=76.16 Aligned_cols=78 Identities=27% Similarity=0.374 Sum_probs=41.0
Q ss_pred ECCCCEECCCCEEC--CCcEECCCcEECCCcEEEeeEECCCCEECC---CcEEEeeEECCCCEECCCcEEecCCcCCccc
Q 015225 299 IHPSAKVHPTAKIG--PNVSISANVRVGAGVRLISCIVLDDVEIKE---NAVVLNSIIGWKSSLGRWARVQGNGDYNAKL 373 (411)
Q Consensus 299 i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~ 373 (411)
|+|.+.||.|-.+- -+++||+-++||+++.| .+++++|. +|--++-.||+++.||.++.|.++
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgn------- 218 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGN------- 218 (269)
T ss_pred ccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCC-------
Confidence 44444444443333 24566666666665555 44444432 222224466666666666666665
Q ss_pred ceeEECCCCEECCCcEE
Q 015225 374 GITILGEAVTVEDEVVV 390 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v 390 (411)
..||++++|++|++|
T Consensus 219 --V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 219 --VTIGEGAVIAAGSVV 233 (269)
T ss_pred --eeECCCcEEeccceE
Confidence 556666655555544
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=88.54 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=56.7
Q ss_pred cEECCCCEECCCCEECCC-cEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccce
Q 015225 297 VYIHPSAKVHPTAKIGPN-VSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~-~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+.||+++.++....+..+ +.||++|.|+++|.|..-...++.. .+.+++||++|.||.++.+..+
T Consensus 598 a~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~-----~~~~v~IG~~~~IG~~a~V~~g--------- 663 (695)
T TIGR02353 598 VKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVM-----KSDTVTIGDGATLGPGAIVLYG--------- 663 (695)
T ss_pred CEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecccccccc-----ccCCeEECCCCEECCCCEECCC---------
Confidence 334444444333333222 5777777777777775422222221 2346778888888888888777
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.||+++.|++++.+ ++..+.++++.-
T Consensus 664 ~~IGd~a~Ig~~SvV~~g~~vp~~s~~~ 691 (695)
T TIGR02353 664 VVMGEGSVLGPDSLVMKGEEVPAHTRWR 691 (695)
T ss_pred CEECCCCEECCCCEEcCCcccCCCCEEE
Confidence 888888888888777 566777777653
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-06 Score=87.97 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=54.8
Q ss_pred CcEECCCCEECCCCE-ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcE-EEeeEECCCCEECCCcEEecCCcCCccc
Q 015225 296 DVYIHPSAKVHPTAK-IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAV-VLNSIIGWKSSLGRWARVQGNGDYNAKL 373 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~-i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-i~~s~i~~~~~ig~~~~i~~~~~~~~~~ 373 (411)
++.||+++.|++... ..+.+.||+||.|+++|.+.+..+. .+.. ++..+||++|.||.+|.|..+
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~------~~~l~~g~i~IG~~~~IG~~s~I~~g------- 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAE------RGRLHTGPVTLGRDAFIGTRSTLDID------- 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCC------CCceeecCcEECCCcEECCCCEEcCC-------
Confidence 345555555554211 1356678888888888887653332 2222 234477777777777777666
Q ss_pred ceeEECCCCEECCCcEEc-ceEEcCCCEE
Q 015225 374 GITILGEAVTVEDEVVVI-NSIVLPNKVL 401 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v~-~~~i~~~~~v 401 (411)
++||+++.|++++.|. +..|.++++.
T Consensus 179 --~~Igd~a~vgagS~V~~g~~v~~~~~~ 205 (695)
T TIGR02353 179 --TSIGDGAQLGHGSALQGGQSIPDGERW 205 (695)
T ss_pred --CEECCCCEECCCCEecCCcccCCCCEE
Confidence 7777777777777663 3445555554
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=69.86 Aligned_cols=103 Identities=23% Similarity=0.157 Sum_probs=68.9
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEe--------------eEECCCCEE
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLN--------------SIIGWKSSL 357 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------s~i~~~~~i 357 (411)
.+.|.|+++|...+.|++++.|+++|+|.+.+++. .-+||.|+.|++.++|.+ -+||.+.+.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 46788999999999999999999999999999986 689999999999998875 256665554
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
.-+|....-.- -.+-+|+..|.+|+|+.+ .+|+||++..|-
T Consensus 88 eVgc~s~A~kv----Gd~NVieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 88 EVGCKSSAKKV----GDRNVIESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred Eeechhhhhhh----cCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence 44443222000 001344444444445444 355555555443
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=74.24 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=69.5
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEE---------eeEECCCCEECCCcEEE-eeEECCCCEE
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLI---------SCIVLDDVEIKENAVVL-NSIIGWKSSL 357 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~s~i~~~~~i 357 (411)
+..+++.+.||++-.+++ +++|+...+||.+|.|..++.++ +-.||+||.||.++.|- +..||++++|
T Consensus 148 gvdihpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavI 227 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVI 227 (269)
T ss_pred cccccchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEE
Confidence 445677777787777765 77777777888888887777776 35899999999988887 8888888888
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
++++.+..+.+++. ..+|+-|++
T Consensus 228 aAGsvV~kDVP~~~----~AvGnPAkl 250 (269)
T KOG4750|consen 228 AAGSVVLKDVPPNT----LAVGNPAKL 250 (269)
T ss_pred eccceEEeccCCCc----eecCCchhh
Confidence 88888888766666 666666554
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=70.39 Aligned_cols=87 Identities=23% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCcEECCCCEECCCCEE--CCCcEECCCcEECCCcEEEe-eEECCCCEECCCcE--EEeeEECCCCEECCCcEEecCCcC
Q 015225 295 GDVYIHPSAKVHPTAKI--GPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAV--VLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i--~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~--i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
....+|+++.++.++.+ ..+..||+++.++++|.|.. +..++...-..+.. ...++||++|.||.++.|..|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpG--- 142 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPG--- 142 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCC---
Confidence 34556666666665553 24455666666666666642 22222222222211 224777777777777777776
Q ss_pred CcccceeEECCCCEECCCcEE
Q 015225 370 NAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||+++.|++++++
T Consensus 143 ------V~IG~gavigagsVV 157 (190)
T COG0110 143 ------VTIGEGAVIGAGSVV 157 (190)
T ss_pred ------EEECCCcEEeeCCEE
Confidence 777777777777666
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-06 Score=71.19 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=12.7
Q ss_pred cceEEcCCCEEcCCCCCcc
Q 015225 391 INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 391 ~~~~i~~~~~v~~~~~~~~ 409 (411)
.+++|++|++|++++|+..
T Consensus 147 ~gavigagsVVtkdvp~~~ 165 (190)
T COG0110 147 EGAVIGAGSVVTKDVPPYG 165 (190)
T ss_pred CCcEEeeCCEEeCccCCCe
Confidence 4677777777777776653
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00039 Score=64.72 Aligned_cols=186 Identities=15% Similarity=0.223 Sum_probs=114.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCccc-CCcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL-AGQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSIS 74 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~ 74 (411)
+.++-+|+|||| .||||+- ..||.++|+ .++++++..++++... ..+.-++..+...++..++++++..
T Consensus 1 l~kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~ 75 (300)
T cd00897 1 LNKLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA 75 (300)
T ss_pred CCcEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC
Confidence 357889999999 9999976 889999999 4669999999987542 1233233334445577888988742
Q ss_pred ccCCcceEEeeC------------------------CCCCCChHHHHH-----HHHHhhccCCCeEEEEcCCccc-CCCh
Q 015225 75 NELKVPVRYLKE------------------------DKPHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCC-SFPL 124 (411)
Q Consensus 75 ~~~~~~i~~v~~------------------------~~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~-~~~l 124 (411)
. .+..+.+..| -.+.|.++.... .++.+...+-+++.+.+.|.+. ..|
T Consensus 76 ~-~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~D- 153 (300)
T cd00897 76 G-VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVD- 153 (300)
T ss_pred C-CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCC-
Confidence 1 1112222111 012244433221 1333433446899999999975 333
Q ss_pred HHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEE-cCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHH
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIA-DPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTA 194 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~-d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~ 194 (411)
..++..+.++++++++=+.+. ..+ ..-|.+.. | ..-+|+++.+-|.. ....+.+++.++|+-+.++.
T Consensus 154 p~~lg~~~~~~~~~~~evv~K--t~~dek~G~l~~~~-g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~ 230 (300)
T cd00897 154 LRILNHMVDNKAEYIMEVTDK--TRADVKGGTLIQYE-GKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKR 230 (300)
T ss_pred HHHHHHHHhcCCceEEEEeec--CCCCCcccEEEEEC-CEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHH
Confidence 346777788888877644443 333 33455543 3 33467888776532 13456789999999887765
Q ss_pred hh
Q 015225 195 IQ 196 (411)
Q Consensus 195 l~ 196 (411)
+.
T Consensus 231 ~~ 232 (300)
T cd00897 231 VV 232 (300)
T ss_pred HH
Confidence 54
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=77.04 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred CeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC---------ceeEEeccCCC-----
Q 015225 109 SHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK---------ELLHYTEKPET----- 174 (411)
Q Consensus 109 ~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~---------~v~~~~e~~~~----- 174 (411)
.-++|..+|.++...-...+.. .+..+++++.+.+.+-.+..|++..| +++ .+.++..||..
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~-~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLD-RQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeC-CCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 4579999994432111112221 22567778888766667888999999 566 67788777621
Q ss_pred ------cccCcccceEEEeCHHHHHHhhh
Q 015225 175 ------FVSDLINCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 175 ------~~~~~~~~Giyi~~~~~~~~l~~ 197 (411)
....+.++|++.|+.+..+.|-.
T Consensus 130 ~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CCcccCCCcccccccceeccHHHHHHHHH
Confidence 22345689999999987765544
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.9e-05 Score=78.66 Aligned_cols=209 Identities=13% Similarity=0.151 Sum_probs=116.1
Q ss_pred eEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC--CceeEEeccCC--------Cccc
Q 015225 110 HIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT--KELLHYTEKPE--------TFVS 177 (411)
Q Consensus 110 ~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~--~~v~~~~e~~~--------~~~~ 177 (411)
.++|..||.+. +..+.+ -..++++......+.+-.+..|+++.| .+ +++..+..||. ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~-~~~~~~~~~~LqKps~eel~a~~~~~~ 226 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSS-RKSPERLDFMLQKPSLEELGGLSKTHL 226 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeC-CCChHHHHHHhcCCCHHHHHhhhcCCe
Confidence 79999999863 332322 133566666666554667889999988 44 67888888873 2335
Q ss_pred CcccceEEEeCHHHHHHhhhhh-hcccccccccccchhhhhhhcccCCCCceeeeccchhhccc----------CCCceE
Q 015225 178 DLINCGVYVFTPDFFTAIQGVL-THREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA----------GKKQLY 246 (411)
Q Consensus 178 ~~~~~Giyi~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~----------~~~~v~ 246 (411)
.+.++|+|+|+....+.|.+.. .......++ +++..|+++.|- ++.++.
T Consensus 227 ~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~--------------------~dlY~Df~~aLg~~~~~~~~el~~l~~~ 286 (974)
T PRK13412 227 FLMDIGIWLLSDRAVELLMKRSGKEDGGKLKY--------------------YDLYSDFGLALGTHPRIGDDELNALSVA 286 (974)
T ss_pred EEEeeeEEEEChHHHHHHHHhhhcccCCccee--------------------eehHHHHHHhcCCCCCcchhhhcccceE
Confidence 6789999999998887776542 211111112 222233333322 223455
Q ss_pred EEeecc-eeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECC
Q 015225 247 TYETMD-FWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGA 325 (411)
Q Consensus 247 ~~~~~~-~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~ 325 (411)
.+...+ .|+-+||-..|+.....+...... .+.++... +.+ .+.+.+. +++++.++.+++
T Consensus 287 i~~L~~~~F~H~GTs~E~l~~~~~~q~~~~~-~~~i~~~~-------------~~~----~~~~~v~-ns~~~~~~s~~~ 347 (974)
T PRK13412 287 ILPLPGGEFYHYGTSRELISSTLAVQNLVTD-QRRIMHRK-------------VKP----HPAMFVQ-NAVLSGKLTAEN 347 (974)
T ss_pred EEEcCCceeEEecCcHHHhcCchhHHHHhhh-hhhhhccc-------------cCC----CCceEEE-eeEecCCcccCC
Confidence 555554 677789988887654333222211 11111110 011 1112232 666666666666
Q ss_pred CcE-EEeeEECCCCEECCCcEEEeeE-ECCCCEECCCcEEe
Q 015225 326 GVR-LISCIVLDDVEIKENAVVLNSI-IGWKSSLGRWARVQ 364 (411)
Q Consensus 326 ~~~-i~~~~i~~~~~i~~~~~i~~s~-i~~~~~ig~~~~i~ 364 (411)
++. |.+|.|+.+.+||++|.|.++- ..-+..|-+++.+-
T Consensus 348 ~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~ 388 (974)
T PRK13412 348 ATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCID 388 (974)
T ss_pred CeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEE
Confidence 644 6667777777777777776653 22235555555443
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-05 Score=66.67 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=78.3
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCc
Q 015225 293 IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 293 ~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
..+++.||+++.+.- .++|+...+|+++.|..-+++.+++|+.+|.+. |.+...+.+||+++.|.+-
T Consensus 19 v~gdViIG~nS~l~~-------~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gk----- 86 (277)
T COG4801 19 VKGDVIIGKNSMLKY-------GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK----- 86 (277)
T ss_pred EeccEEEcccceeee-------eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeee-----
Confidence 345566666665543 478888999999999999999999999999998 8888999999999999885
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEcCC
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLNVS 404 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~ 404 (411)
.++..+-.||+++.|++..+..|-++-.+
T Consensus 87 ----l~v~gdLdig~dV~Ieggfva~g~Ivirn 115 (277)
T COG4801 87 ----LTVIGDLDIGADVIIEGGFVAKGWIVIRN 115 (277)
T ss_pred ----EEEecccccccceEEecCeeecceEEEcC
Confidence 77777789999999988887777766553
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.006 Score=59.24 Aligned_cols=180 Identities=19% Similarity=0.301 Sum_probs=107.3
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhccc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISNE 76 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~~ 76 (411)
++.+|+|||| .|+||+- .-||.+++|. |+++++.+.+.++.+ ..+.-++... ...+....++... +.
T Consensus 105 klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS-~nt~~t~s~f~~~-~Y 177 (472)
T COG4284 105 KLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTS-LNTEETDSYFKSN-DY 177 (472)
T ss_pred ceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEec-CCcHHHHHHHhhh-hh
Confidence 5779999999 9999987 7899999999 889999888876653 1344445444 3333344454431 11
Q ss_pred CCc---ceEEeeC-----------------C------CCCCChH---HHHH--HHHHhhccCCCeEEEEcCCccc-CCCh
Q 015225 77 LKV---PVRYLKE-----------------D------KPHGSAG---GLYY--FRDMIMEENPSHIILLNCDVCC-SFPL 124 (411)
Q Consensus 77 ~~~---~i~~v~~-----------------~------~~~g~~~---~l~~--~~~~i~~~~~~~~lv~~~D~i~-~~~l 124 (411)
.+. +|.+..| + .+.|.++ +|+. ..+.+.+.+-+.+.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 111 1221111 0 0223333 4443 3444434456889999999963 5554
Q ss_pred HHHHHHHHhcCCeeEEEEEecCcccccceeEEE-EcCCCCceeEEeccCCC----------cccCccc-ceEEEeCHHHH
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI-ADPNTKELLHYTEKPET----------FVSDLIN-CGVYVFTPDFF 192 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~d~~~~~v~~~~e~~~~----------~~~~~~~-~Giyi~~~~~~ 192 (411)
.++.++...+.+.++=++... +....-|.++ .| ...+|+++.+-|.. ......+ .++++++-..+
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~-g~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l 334 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKT-KADEKVGILVTYD-GKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFL 334 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecc-cccccceEEEEeC-CceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHH
Confidence 456777778877666555531 2334456655 66 56789999886642 1123334 56677666554
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.4e-05 Score=49.35 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=15.3
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRL 329 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i 329 (411)
.|+++++|++++.|.+++.||++|.|+++|.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 44445555555554445555555555544444
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0015 Score=64.78 Aligned_cols=186 Identities=16% Similarity=0.295 Sum_probs=113.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccC---------------CCCcEEEEecc-cch
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRI---------------PNLAQIFLIGF-YEE 63 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~---------------~gi~~I~Iv~~-~~~ 63 (411)
++-+|+|||| .||||+- ..||.|++|+ ++++++...+++... ..+. .+|-++ ...
T Consensus 116 kvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IP-l~IMTS~~T~ 189 (493)
T PLN02435 116 KLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIH-WYIMTSPFTD 189 (493)
T ss_pred CEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCcee-EEEeCCcchh
Confidence 5678899999 9999987 8899999885 889999998886431 0122 244444 456
Q ss_pred HHHHHHHhhhcccCCc---ceEEeeCC---------------------CCCCChHHHHH-----HHHHhhccCCCeEEEE
Q 015225 64 REFALYVSSISNELKV---PVRYLKED---------------------KPHGSAGGLYY-----FRDMIMEENPSHIILL 114 (411)
Q Consensus 64 ~~i~~~~~~~~~~~~~---~i~~v~~~---------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~ 114 (411)
+..++++++. ..+|. .+.+..|. .+.|.++.... .++.+...+-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 7788999873 22332 34443221 13355544332 2334433446789999
Q ss_pred cCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcCCCC--ceeEEeccCCC-----------cccCc
Q 015225 115 NCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADPNTK--ELLHYTEKPET-----------FVSDL 179 (411)
Q Consensus 115 ~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~--~v~~~~e~~~~-----------~~~~~ 179 (411)
..|.+. ...-..++-.+...+.++.+-+.+. ..+ ..-|.+.....++ .|++|.|-+.. .....
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~ 346 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCW 346 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeec--CCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccch
Confidence 999964 3333456777777888866554432 223 3346665421234 47777664311 12356
Q ss_pred ccceEEEeCHHHHHHhhh
Q 015225 180 INCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 180 ~~~Giyi~~~~~~~~l~~ 197 (411)
.+.+.++|+-++++.+.+
T Consensus 347 gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 347 SNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred hhHHHhhccHHHHHHHHH
Confidence 678889999999887754
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=46.28 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=2.5
Q ss_pred CCCcEECCC
Q 015225 318 SANVRVGAG 326 (411)
Q Consensus 318 g~~~~i~~~ 326 (411)
|++|.||++
T Consensus 5 G~~~~ig~~ 13 (34)
T PF14602_consen 5 GDNCFIGAN 13 (34)
T ss_dssp -TTEEE-TT
T ss_pred CCCEEECcc
Confidence 333333333
|
... |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0036 Score=61.23 Aligned_cols=188 Identities=20% Similarity=0.260 Sum_probs=110.3
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
.++.+|+|||| .||||+- ..||.+++|. ++++++..++++... ..+.=++......++..+++++++ .
T Consensus 55 ~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-f 128 (420)
T PF01704_consen 55 GKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-F 128 (420)
T ss_dssp TCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-C
T ss_pred CCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-c
Confidence 46788999999 9999986 8899999994 558888888877651 134434444455567888999884 2
Q ss_pred cCCcceEEeeC----------------CC----------CCCChHHHHH-----HHHHhhccCCCeEEEEcCCcccCCCh
Q 015225 76 ELKVPVRYLKE----------------DK----------PHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCCSFPL 124 (411)
Q Consensus 76 ~~~~~i~~v~~----------------~~----------~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~~~~l 124 (411)
..+.++.+..| .. +.|.++.... .++.+...+-+++.+.+.|.+....=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 22222322211 00 1245543322 23344334468999999999643322
Q ss_pred HHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHHh
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTAI 195 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~l 195 (411)
..++..+.+.++++.+-+++. ..+ ..-|.+......-+|+++.+-|.. ....+.++|-.+|+-..++.+
T Consensus 209 p~~lG~~~~~~~~~~~evv~K--t~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPK--TSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE---CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhccchhheeeeec--CCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 456777778888876666654 233 334555433022356666654421 224556888889998888766
Q ss_pred hh
Q 015225 196 QG 197 (411)
Q Consensus 196 ~~ 197 (411)
.+
T Consensus 287 ~~ 288 (420)
T PF01704_consen 287 LE 288 (420)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=60.82 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=105.6
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhccCC-------C--CcEEEEecc-cchHHHHHHHh
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKRIP-------N--LAQIFLIGF-YEEREFALYVS 71 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~~-------g--i~~I~Iv~~-~~~~~i~~~~~ 71 (411)
-+|+|||| .||||+- .-||.++|+ .|++++++.++++.... + +. .+|-++ ..++..+++++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IP-l~IMTS~~Th~~T~~~fe 75 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIP-FVIMTSDDTHSKTLKLLE 75 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCcee-EEEECCCchhHHHHHHHH
Confidence 47899999 9999987 889999999 58899999999886530 1 22 344444 45677888988
Q ss_pred hhcccCCc---ceEEeeC-------------------C-----CCCCChHHHHHH-----HHHhhccCCCeEEEEcCCcc
Q 015225 72 SISNELKV---PVRYLKE-------------------D-----KPHGSAGGLYYF-----RDMIMEENPSHIILLNCDVC 119 (411)
Q Consensus 72 ~~~~~~~~---~i~~v~~-------------------~-----~~~g~~~~l~~~-----~~~i~~~~~~~~lv~~~D~i 119 (411)
+. ..+|. ++.+..| . .+.|.++..... ++.+...+-+++.+..-|.+
T Consensus 76 ~n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~ 154 (315)
T cd06424 76 EN-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNA 154 (315)
T ss_pred HC-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchh
Confidence 63 22221 2222211 0 133444433221 33343344578888888887
Q ss_pred c-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCc--e--eEEeccCC------------Cccc----
Q 015225 120 C-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKE--L--LHYTEKPE------------TFVS---- 177 (411)
Q Consensus 120 ~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~--v--~~~~e~~~------------~~~~---- 177 (411)
. ......++-.+..+++++...+.+. .....-|.+.. +..+++ | ++|.|-+. ...+
T Consensus 155 L~~~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~ 232 (315)
T cd06424 155 LAFKAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSP 232 (315)
T ss_pred hhhccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccccccccc
Confidence 5 3334455555666777766554443 44456676653 212333 4 66655321 0011
Q ss_pred CcccceEEEeCHHHHH
Q 015225 178 DLINCGVYVFTPDFFT 193 (411)
Q Consensus 178 ~~~~~Giyi~~~~~~~ 193 (411)
...|++.++|+-+.+.
T Consensus 233 f~gNi~~~~f~l~~~~ 248 (315)
T cd06424 233 FPGNINQLVFSLGPYM 248 (315)
T ss_pred CCCeeeeEEEeHHHHH
Confidence 2568899999976543
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00022 Score=43.16 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=13.1
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEE
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL 329 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i 329 (411)
+.||++++|++++.| ++.||++|.|++++.|
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 345555555555554 2555555555555444
|
... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00044 Score=60.08 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=56.6
Q ss_pred CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc
Q 015225 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 392 (411)
..+....+.||+++.+...++++...+|+++.|.+.+++.++.|+..|.+.++ +.++.++-||.++.|++
T Consensus 16 ~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gN---------V~ve~dayiGE~~sI~g 85 (277)
T COG4801 16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN---------VIVENDAYIGEFSSIKG 85 (277)
T ss_pred eEEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeecc---------EEEcCceEEeccceeee
Confidence 34555566677777888888899999999999999999999999999988887 77788888888877744
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.034 Score=56.94 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=91.1
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhccC-------C-----CCcEEEEecc-cchHH
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKRI-------P-----NLAQIFLIGF-YEERE 65 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~-------~-----gi~~I~Iv~~-~~~~~ 65 (411)
.++.+|+|||| .|+||+- .-||.++|+ .|+++++..++.+... . .+. .+|-++ ..++.
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IP-l~IMTS~~T~~~ 200 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIP-LVIMTSDDTHAR 200 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCce-EEEECCcchhHH
Confidence 35778999999 9999976 779999997 4889999999987542 0 122 344444 44577
Q ss_pred HHHHHhhhcccCCc---ceEEeeCC------------------------CCCCChHHHHH-----HHHHhhccCCCeEEE
Q 015225 66 FALYVSSISNELKV---PVRYLKED------------------------KPHGSAGGLYY-----FRDMIMEENPSHIIL 113 (411)
Q Consensus 66 i~~~~~~~~~~~~~---~i~~v~~~------------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv 113 (411)
..+++++. ..+|. .+.+..|. .+.|.++.... .++.+...+-+++.+
T Consensus 201 T~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v 279 (615)
T PLN02830 201 TLKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVF 279 (615)
T ss_pred HHHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEE
Confidence 88888874 22322 23322211 12233332221 133443444678899
Q ss_pred EcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 114 LNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 114 ~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
...|.+. ......++-.+...+.++.+-+.+. .....-|.+.
T Consensus 280 ~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K--~~~E~vGvi~ 322 (615)
T PLN02830 280 FQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR--KAKEAIGAIA 322 (615)
T ss_pred EeccchhhhcccHHHhHHHHhcCCceEEEEEEC--CCCcccceEE
Confidence 9999864 2333677888888888877766654 3334456554
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.015 Score=50.90 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=60.3
Q ss_pred cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEc
Q 015225 36 QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLN 115 (411)
Q Consensus 36 ~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~ 115 (411)
+|||+|+++.+... ++++++++++. +.+.++... ++ +.++.+.. .|...++..+.+.+.. ..+.++++.
T Consensus 30 ~~ll~~~l~~l~~~-~~~~vvvv~~~--~~~~~~~~~----~~--v~~i~~~~-~G~~~si~~al~~~~~-~~~~vlv~~ 98 (195)
T TIGR03552 30 LAMLRDVITALRGA-GAGAVLVVSPD--PALLEAARN----LG--APVLRDPG-PGLNNALNAALAEARE-PGGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCC--HHHHHHHHh----cC--CEEEecCC-CCHHHHHHHHHHHhhc-cCCeEEEEe
Confidence 68999999999996 77788888763 233444322 23 44555433 3899999999887642 235899999
Q ss_pred CCccc--CCChHHHHHHHH
Q 015225 116 CDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 116 ~D~i~--~~~l~~~l~~~~ 132 (411)
||+++ ...+..+++.+.
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 99985 556788877653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=41.55 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=62.3
Q ss_pred cchhHhHHHHhccCCC--CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEE
Q 015225 36 QPMIQHPISACKRIPN--LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIIL 113 (411)
Q Consensus 36 ~pli~~~l~~l~~~~g--i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv 113 (411)
.+++.++++.+.+. . ..+++|+.+...+...+.+.+..+. ...+.........|.+.++..+.+... .+.+++
T Consensus 9 ~~~l~~~l~s~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~---~d~v~~ 83 (156)
T cd00761 9 EPYLERCLESLLAQ-TYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAAR---GEYILF 83 (156)
T ss_pred HHHHHHHHHHHHhC-CccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhc---CCEEEE
Confidence 48999999999996 5 6678877766555556666553221 123444445566788888988888774 688999
Q ss_pred EcCCcccCCC-hHHHHHHH
Q 015225 114 LNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 114 ~~~D~i~~~~-l~~~l~~~ 131 (411)
+.+|.+...+ +..++..+
T Consensus 84 ~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 84 LDADDLLLPDWLERLVAEL 102 (156)
T ss_pred ECCCCccCccHHHHHHHHH
Confidence 9999987555 45543433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.081 Score=44.04 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=72.9
Q ss_pred cccCCc-chhHhHHHHhccC-CCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRI-PNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~-~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. ..+..+|+.+.++ ....+|+|+-+...+...+.+++..+ .+..++++..+...|.+.++..+.+... .
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~---~ 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK---G 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH-----S
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc---e
Confidence 445455 6778888877764 23556666654443344555655433 4567888887766788899988888876 5
Q ss_pred CeEEEEcCCcccCCC-hHHHHHHHHhcCCeeEEEEEe
Q 015225 109 SHIILLNCDVCCSFP-LPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 109 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~~~~~~ 144 (411)
+.++++..|.....+ +..+++...+.+.++.+....
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 789999999987544 899999888877765544443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.045 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.1
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECC
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
+.+++.|. ++++..++.+|++++|.+|.|+.++.||++|.|.++-+.+
T Consensus 276 ~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 276 SEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred cCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 34444444 6777777777777777777777777777777776654443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.4 Score=39.85 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=69.4
Q ss_pred ccCCCCCCc--cCcccCCc-chhHhHHHHhccCCCCc---EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCCh
Q 015225 20 RPLSFNTPK--PLFPLAGQ-PMIQHPISACKRIPNLA---QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSA 93 (411)
Q Consensus 20 ~plt~~~pK--~llpi~g~-pli~~~l~~l~~~~gi~---~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~ 93 (411)
.+.....|+ .++|.-|. ..+..+|+.+.++...+ +++|+.....+...+.+++.... .+.++......|-+
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~ 98 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKA 98 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChH
Confidence 344445555 56677666 67888888876642222 56666554444455555543221 36666666667888
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcccCCC-hHHHHHHHHh
Q 015225 94 GGLYYFRDMIMEENPSHIILLNCDVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 94 ~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 133 (411)
.++..+.+... .+.++++.+|.+...+ +..+++...+
T Consensus 99 ~a~n~gi~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 99 AALNRALALAT---GEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHHHHcC---CCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 88888887765 5889999999987544 7888777643
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.5 Score=36.25 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=61.8
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. ..|..+|+.+.++. ..-+++|+-....+...+.+..........+.+.......|.+.++..+.+... .
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~---~ 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK---G 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC---C
Confidence 445454 67888888888752 134566664443433444444432222223455555566788888888888764 6
Q ss_pred CeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 109 SHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 109 ~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
+.++++.+|.....+ +..++..+.+.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccC
Confidence 889999999986444 67764554443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.7 Score=37.65 Aligned_cols=99 Identities=8% Similarity=0.060 Sum_probs=63.4
Q ss_pred CcccCCcc---hhHhHHHHhccCCC-CcEEEEecccc-hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 30 LFPLAGQP---MIQHPISACKRIPN-LAQIFLIGFYE-EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 30 llpi~g~p---li~~~l~~l~~~~g-i~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
++|.-|.. .|..+|+.+..+.. ..+++||-... .+...+.+.++.++.+ ++++......|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35665553 78899999887621 24566553332 4445555555433333 666665555788888888877654
Q ss_pred ccCCCeEEEEcCCcccC-CChHHHHHHHHh
Q 015225 105 EENPSHIILLNCDVCCS-FPLPDLLEAHKR 133 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~-~~l~~~l~~~~~ 133 (411)
.+.++++.+|.... .-+..+++...+
T Consensus 81 ---gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 81 ---YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ---CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 57888999999864 447777776644
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=91.87 E-value=2.1 Score=35.39 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=63.4
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. .++..+++.+.... ...+++|+-....+...+.+.+.. ..+.++......|.+.++..+.+... .
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~~~---~ 75 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF----PEVRLIRNGENLGFGAGNNQGIREAK---G 75 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC----CCeEEEecCCCcChHHHhhHHHhhCC---C
Confidence 344444 78889999988752 234566665544444455554421 14666666666788999988888774 6
Q ss_pred CeEEEEcCCcccCC-ChHHHHHHHHhc
Q 015225 109 SHIILLNCDVCCSF-PLPDLLEAHKRY 134 (411)
Q Consensus 109 ~~~lv~~~D~i~~~-~l~~~l~~~~~~ 134 (411)
+.++++..|..... .+..+++.+.+.
T Consensus 76 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 76 DYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred CEEEEECCCcEECccHHHHHHHHHHhC
Confidence 88889999988644 477777665443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.45 E-value=14 Score=35.73 Aligned_cols=135 Identities=17% Similarity=0.253 Sum_probs=74.0
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC---CC--CcEEEEecccchHHHHHHHhhhccc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI---PN--LAQIFLIGFYEEREFALYVSSISNE 76 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~---~g--i~~I~Iv~~~~~~~i~~~~~~~~~~ 76 (411)
++..+=|-|| .|+-|+= .-||.++++. |.++++-++.+...+ -+ +.=|+...-.-.+..+++++++..
T Consensus 103 KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~- 176 (498)
T KOG2638|consen 103 KLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG- 176 (498)
T ss_pred heEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC-
Confidence 4567778999 9999976 7799999995 558777666554432 12 222333333444566777777521
Q ss_pred CCcceE--------------EeeC----------CC-CCCChH---HHHH--HHHHhhccCCCeEEEEcCCccc-CCChH
Q 015225 77 LKVPVR--------------YLKE----------DK-PHGSAG---GLYY--FRDMIMEENPSHIILLNCDVCC-SFPLP 125 (411)
Q Consensus 77 ~~~~i~--------------~v~~----------~~-~~g~~~---~l~~--~~~~i~~~~~~~~lv~~~D~i~-~~~l~ 125 (411)
..+++. .++. .+ +-|.++ +++. .++.+-....+.++|.+.|.+. ..||.
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ 256 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN 256 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH
Confidence 111111 0100 00 123332 3322 1222222346899999999995 56654
Q ss_pred HHHHHHHhcCCeeEEEEEe
Q 015225 126 DLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~ 144 (411)
++++..+....-.|=+++
T Consensus 257 -ILn~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 257 -ILNHVINNNIEYLMEVTD 274 (498)
T ss_pred -HHHHHhcCCCceEEEecc
Confidence 355555555554444444
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=91.31 E-value=1 Score=39.63 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=62.9
Q ss_pred ccCCc-chhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhc
Q 015225 32 PLAGQ-PMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIME 105 (411)
Q Consensus 32 pi~g~-pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~ 105 (411)
|.-|. ..|...++.+.+. ...-+|+|+-+...+...+.+++.....+..+.++......|-++++..+.+...
T Consensus 4 p~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~- 82 (211)
T cd04188 4 PAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR- 82 (211)
T ss_pred cccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc-
Confidence 44343 4455555555432 0134566664433333444444432333333566665566788999988888765
Q ss_pred cCCCeEEEEcCCcccC-CChHHHHHHHHhcCCeeEEE
Q 015225 106 ENPSHIILLNCDVCCS-FPLPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 106 ~~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~~~ 141 (411)
.+.++++.+|...+ ..+..+++...+.+.++++.
T Consensus 83 --gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 83 --GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 58899999999864 44788777755555554443
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=90.29 E-value=3.2 Score=37.30 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=61.6
Q ss_pred cccCCc-chhHhHHHHhccCCCC---cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhcc
Q 015225 31 FPLAGQ-PMIQHPISACKRIPNL---AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEE 106 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~gi---~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~ 106 (411)
+|.-|. -.|..+|+.+..+.-- -+|+||.....+...+.+++.......++..+......|-+.++..+.+...
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~-- 84 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR-- 84 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--
Confidence 344443 4566777777664111 1355554433344445555432111234455444444577888888888654
Q ss_pred CCCeEEEEcCCcccCCC-hHHHHHHHHhcCCeeEEE
Q 015225 107 NPSHIILLNCDVCCSFP-LPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 107 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~~~ 141 (411)
.+.++++.+|.....+ +..+++.+.+.+.++.++
T Consensus 85 -gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 85 -GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred -CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 5888899999987544 778887776443454333
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.2 Score=35.23 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=64.5
Q ss_pred ccCCc-chhHhHHHHhccCC---CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 32 PLAGQ-PMIQHPISACKRIP---NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 32 pi~g~-pli~~~l~~l~~~~---gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
|..+. ..+..+|+.+.+.. ...+|+|+-+...+...+.+++...+++ .+.++......|-+.++..+.+...
T Consensus 4 ~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~--- 79 (185)
T cd04179 4 PAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAAR--- 79 (185)
T ss_pred cccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhc---
Confidence 33344 45666777776652 2566777654433334444544322222 3456666666788899888888765
Q ss_pred CCeEEEEcCCcccC-CChHHHHHHHHhcCCeeEEE
Q 015225 108 PSHIILLNCDVCCS-FPLPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 108 ~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~~~ 141 (411)
.+.++++.+|.... .-+..++....+.+.++++.
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 48899999998764 34777887655555554433
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
Probab=88.14 E-value=7.7 Score=34.30 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=59.6
Q ss_pred cccCCc--chhHhHHHHhccCCCCc---EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCC-CChHHHHHHHHHhh
Q 015225 31 FPLAGQ--PMIQHPISACKRIPNLA---QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPH-GSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~--pli~~~l~~l~~~~gi~---~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~-g~~~~l~~~~~~i~ 104 (411)
+|.-|. .++...|+.+.....-. +|+|+-+...+...+.+.....+. .+.++...... +.++++..+.+...
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCC
Confidence 455554 36788888887753233 577776555555666666543222 33444333333 34566667777554
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHh
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 133 (411)
.+.++++.+|...+.+ +..+++...+
T Consensus 85 ---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 ---GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred ---CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 5889999999987544 7777776654
|
Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=88.03 E-value=4.1 Score=35.41 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=59.3
Q ss_pred cccCCc-chhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. ..|...|+.+..... --+|+|+-....+...+.++....+.+..+.+.......|.+.++..+..... .
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~---g 80 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD---G 80 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC---C
Confidence 444444 477888888776521 12455554333333344444433333334566666666788888877766543 5
Q ss_pred CeEEEEcCCcccC-CChHHHHHHHH
Q 015225 109 SHIILLNCDVCCS-FPLPDLLEAHK 132 (411)
Q Consensus 109 ~~~lv~~~D~i~~-~~l~~~l~~~~ 132 (411)
+.++++..|.... ..+..+++...
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHHHh
Confidence 8889999998764 44788877633
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.5 Score=36.29 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=62.6
Q ss_pred cccCCc-chhHhHHHHhccCC--CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP--NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~--gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
+|.-|. ..|..+|+.+.+.. ..-+|+||-+...+...+.+++..+.. ..+.++......|-+.++..+.+...
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~-~~i~~~~~~~n~G~~~a~n~g~~~a~--- 78 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY-PRVRLIVRPGKRGLGSAYIEGFKAAR--- 78 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC-CceEEEecCCCCChHHHHHHHHHHcC---
Confidence 344444 45777777776642 134566664433333344444332222 23455555566788888888888765
Q ss_pred CCeEEEEcCCcccC-CChHHHHHHHHhcCCeeE
Q 015225 108 PSHIILLNCDVCCS-FPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 108 ~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~ 139 (411)
.+.++++.+|.... ..+..+++...+.+.+++
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 47888999998764 347777776555555543
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=87.94 E-value=5.1 Score=34.67 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred cchhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 36 QPMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 36 ~pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
...|..+|+.+.+... ..+|+|+-+...+...+.+.+.....+ +.++......|.+.++..+++.......+.++++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~l 86 (202)
T cd04185 9 LDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLM 86 (202)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEe
Confidence 3578888888877522 235776654444455566665432222 5666555566777777776665432235788899
Q ss_pred cCCcccCCC-hHHHHHHHH
Q 015225 115 NCDVCCSFP-LPDLLEAHK 132 (411)
Q Consensus 115 ~~D~i~~~~-l~~~l~~~~ 132 (411)
..|...+.+ +..+++...
T Consensus 87 d~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 87 DDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCCcChHHHHHHHHHHh
Confidence 999987544 667666654
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=87.74 E-value=5.8 Score=37.06 Aligned_cols=104 Identities=11% Similarity=0.061 Sum_probs=63.7
Q ss_pred cccCCc--chhHhHHHHhccCCC---CcEEEEecccchHHHHHHHhh-hcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 31 FPLAGQ--PMIQHPISACKRIPN---LAQIFLIGFYEEREFALYVSS-ISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~--pli~~~l~~l~~~~g---i~~I~Iv~~~~~~~i~~~~~~-~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
+|.-|. ..+..+|+.+..... ..+|+||-+...+...+.+.+ ........++++..+...|-+.+.-.+++.-.
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 83 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT 83 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc
Confidence 344444 377888888775422 137777754333323333322 11223345777776666788888877777654
Q ss_pred ccCCCeEEEEcCCcccC-CChHHHHHHHHhcCCe
Q 015225 105 EENPSHIILLNCDVCCS-FPLPDLLEAHKRYGGM 137 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~ 137 (411)
.+.++++.+|+... .-|..+++...+....
T Consensus 84 ---gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 84 ---GDVLVFLDSHCEVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred ---CCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence 58899999999864 4488888877655443
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=86.86 E-value=7 Score=35.18 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=51.4
Q ss_pred EEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC-CChHHHHHHH
Q 015225 54 QIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS-FPLPDLLEAH 131 (411)
Q Consensus 54 ~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~-~~l~~~l~~~ 131 (411)
+|+|+-....+...+.+++..+.++ ..+.++......|-+.++..+.+... .+.++++.+|...+ ..+..+++..
T Consensus 42 eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~ 118 (243)
T PLN02726 42 EIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQ 118 (243)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 5666644333333444444322222 24555554555677888887777654 57888999999864 4477888876
Q ss_pred HhcCCeeEE
Q 015225 132 KRYGGMGTM 140 (411)
Q Consensus 132 ~~~~~~~~~ 140 (411)
.+.+.+++.
T Consensus 119 ~~~~~~~v~ 127 (243)
T PLN02726 119 RETGADIVT 127 (243)
T ss_pred HhcCCcEEE
Confidence 666666543
|
|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=86.73 E-value=6 Score=37.65 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=56.1
Q ss_pred hhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCC
Q 015225 38 MIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD 117 (411)
Q Consensus 38 li~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D 117 (411)
+++.+.+.+.+...--+|+++-....+...+.+++..++.+.++..+......|-+.++..+.+.-. .+.++++.+|
T Consensus 24 ~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~---gd~vv~~DaD 100 (325)
T PRK10714 24 LIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT---GDLIITLDAD 100 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC---CCEEEEECCC
Confidence 3444444444431123566664433333344444322223445554444445688889988877654 5788899999
Q ss_pred ccc-CCChHHHHHHHHhcCCeeE
Q 015225 118 VCC-SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 118 ~i~-~~~l~~~l~~~~~~~~~~~ 139 (411)
.-. +..+..+++... .+.+++
T Consensus 101 ~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 101 LQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCCCHHHHHHHHHHHH-hhCCEE
Confidence 986 456888888764 456643
|
|
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=86.67 E-value=7.1 Score=34.28 Aligned_cols=104 Identities=7% Similarity=0.020 Sum_probs=58.1
Q ss_pred cccCCc-chhHhHHHHhccCCCC---cEEEEecccchHHHHHHHhhhcccCCcceEEeeCC--CCCCChHHHHHHHHHhh
Q 015225 31 FPLAGQ-PMIQHPISACKRIPNL---AQIFLIGFYEEREFALYVSSISNELKVPVRYLKED--KPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~gi---~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~--~~~g~~~~l~~~~~~i~ 104 (411)
+|..|. ..|..+|+.+..+..- -+|+|+-....+...+.+.......+..+.++... ...|...++..+.+...
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 444444 5678888887664222 25666544333333344430001223455655543 23455666666666543
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHhcCCe
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKRYGGM 137 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 137 (411)
.+.++++.+|.+...+ +..+++.+.+.+..
T Consensus 83 ---~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 83 ---GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred ---CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 5889999999987444 77777766554443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=86.66 E-value=18 Score=33.22 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=60.3
Q ss_pred chhHhHHHHhccCCCCcEEEEeccc--chHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFY--EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~--~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..+...++.+.+. ..+|+||=+. ..+.+.+.+.+ ...+.++...+..|-+++...+++.......+.++++
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~l 80 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLL 80 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEE
Confidence 4677788888875 4567776443 22334443332 1357777777778999999888877632335899999
Q ss_pred cCCcccCC-ChHHHHHHHHhc
Q 015225 115 NCDVCCSF-PLPDLLEAHKRY 134 (411)
Q Consensus 115 ~~D~i~~~-~l~~~l~~~~~~ 134 (411)
..|..... .+..+++...+.
T Consensus 81 D~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 81 DQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 99998744 467777766544
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=6.6 Score=38.73 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=64.4
Q ss_pred CcccCCc-chhHhHHHHhccCCCC-cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 30 LFPLAGQ-PMIQHPISACKRIPNL-AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 30 llpi~g~-pli~~~l~~l~~~~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
++|.-|. ..|..+++.+.+.... -+|+|+.....+...+.+++..++. .++.++...+..|-++++..+.+...
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~--- 134 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAAR--- 134 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcC---
Confidence 5566565 6888899888765222 2566665433333444444432222 24667765555678888888877654
Q ss_pred CCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 108 PSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 108 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|...+.+ +..+++...+.
T Consensus 135 ~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 135 SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 5889999999986544 78888776543
|
|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=86.01 E-value=7.1 Score=34.82 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=58.9
Q ss_pred chhHhHHHHhccCCCC----cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEE
Q 015225 37 PMIQHPISACKRIPNL----AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHII 112 (411)
Q Consensus 37 pli~~~l~~l~~~~gi----~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~l 112 (411)
+.+..+++.+.+. .. -+|+|+-+...+...+.++....+ ...+.++... ..|.+.++..+.+... .+.++
T Consensus 13 ~~l~~~l~sl~~q-~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~---~d~v~ 86 (249)
T cd02525 13 KYIEELLESLLNQ-SYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSR---GDIII 86 (249)
T ss_pred hhHHHHHHHHHhc-cCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhC---CCEEE
Confidence 5677888888764 22 256666544444445555543222 2245655533 3466777777777654 58899
Q ss_pred EEcCCcccCC-ChHHHHHHHHhcCCee
Q 015225 113 LLNCDVCCSF-PLPDLLEAHKRYGGMG 138 (411)
Q Consensus 113 v~~~D~i~~~-~l~~~l~~~~~~~~~~ 138 (411)
++.+|..... -+..+++...+.+.++
T Consensus 87 ~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 87 RVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred EECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 9999998644 4788887665555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=85.30 E-value=12 Score=32.30 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=50.5
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCCCh---HHHHHHHHHhh
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHGSA---GGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g~~---~~l~~~~~~i~ 104 (411)
+|.-|. +.|...|+.+.++. .--+|+||.....+...+.+++....++ .++.++......|.. .++..+.+...
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~ 86 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR 86 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC
Confidence 344433 46677777776641 1134555544333333344443222222 345555443333432 34444454433
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHH
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~ 131 (411)
.+.++++.+|...+.+ +..+++..
T Consensus 87 ---~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 87 ---YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred ---CCEEEEECCCceEChhHHHHHHHHh
Confidence 5888899999986444 67776654
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=85.08 E-value=11 Score=31.98 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=50.8
Q ss_pred cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC-ChHHHHHHH
Q 015225 53 AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF-PLPDLLEAH 131 (411)
Q Consensus 53 ~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~-~l~~~l~~~ 131 (411)
-+|+|+-+...+...+.+++...+. ..+.++......|.+.++..+.+... .+.++++.+|...+. .+..+++.
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~-~~i~~i~~~~n~G~~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~- 104 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARD-PRVKVIRLSRNFGQQAALLAGLDHAR---GDAVITMDADLQDPPELIPEMLAK- 104 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhC-CCEEEEEecCCCCcHHHHHHHHHhcC---CCEEEEEeCCCCCCHHHHHHHHHH-
Confidence 3566664433333344444432222 24666665556788899988877665 588999999998744 47777776
Q ss_pred HhcCCeeEE
Q 015225 132 KRYGGMGTM 140 (411)
Q Consensus 132 ~~~~~~~~~ 140 (411)
.+.+.++++
T Consensus 105 ~~~~~~~v~ 113 (181)
T cd04187 105 WEEGYDVVY 113 (181)
T ss_pred HhCCCcEEE
Confidence 444555433
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.38 E-value=10 Score=32.66 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=62.7
Q ss_pred CcchhHhHHHHhccCCCCcE-EEEecccc---hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCe
Q 015225 35 GQPMIQHPISACKRIPNLAQ-IFLIGFYE---EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSH 110 (411)
Q Consensus 35 g~pli~~~l~~l~~~~gi~~-I~Iv~~~~---~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~ 110 (411)
|-|++-|.+.......+.+- |++|-... ...+.+.+++.. .+.++.+.+.....|.+.|..+++.+-. .+.
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--g~d~i~l~pR~~klGLgtAy~hgl~~a~---g~f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--GEDNILLKPRTKKLGLGTAYIHGLKHAT---GDF 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--CCCcEEEEeccCcccchHHHHhhhhhcc---CCe
Confidence 44677777776555335544 44442222 223333343321 1236666666667899999998888765 355
Q ss_pred EEEEcCCccc-CCChHHHHHHHHhcCCeeEEEE
Q 015225 111 IILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLV 142 (411)
Q Consensus 111 ~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~ 142 (411)
++++.+|.-- +.-+.++++...+.+.+.++.+
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 6677888864 5568889988777777755443
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.16 E-value=2.1 Score=46.44 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.4
Q ss_pred CcEEEeeEECCCCEECCCcE-EEeeEECCCCEECCCcEEecCCcCCcccceeE-ECCCCEECCCcEEcceEEcCCCEE
Q 015225 326 GVRLISCIVLDDVEIKENAV-VLNSIIGWKSSLGRWARVQGNGDYNAKLGITI-LGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 326 ~~~i~~~~i~~~~~i~~~~~-i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~-i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
.+.+.||++..++.+++++. |++|.|+.++.||+++.|.+ +- ...+..|++++.|..--++....|
T Consensus 331 ~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg----------v~~~~~~~~vP~~~ci~~vpl~~~~~v 398 (974)
T PRK13412 331 AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG----------VPENSWNLDLPEGVCIDVVPVGDRGFV 398 (974)
T ss_pred ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec----------ccccccceecCCCcEEEEEEcCCCcEE
Confidence 45788999999999999854 88999999999999999987 33 333577777776643333444333
|
|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=82.84 E-value=11 Score=33.48 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=59.1
Q ss_pred CcccCCc-c-hhHhHHHHhccCCC-CcEEEEecccch-HHHHHHHhhhcccCCcceEEeeCCCCCCC-hHHHHHHHHHhh
Q 015225 30 LFPLAGQ-P-MIQHPISACKRIPN-LAQIFLIGFYEE-REFALYVSSISNELKVPVRYLKEDKPHGS-AGGLYYFRDMIM 104 (411)
Q Consensus 30 llpi~g~-p-li~~~l~~l~~~~g-i~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~~v~~~~~~g~-~~~l~~~~~~i~ 104 (411)
++|.-|. + ++..+++.+..... .-+|+|+-+... ....+.+++..++.+.++.++......|. ++++..+.+...
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~ 82 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA 82 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcC
Confidence 3456665 3 78888888887621 135666544322 22222222222223445666655444564 777877777653
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHH
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHK 132 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~ 132 (411)
. ..+.++++.+|...+.+ +..++....
T Consensus 83 ~-~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 83 P-DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred C-CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 1 14789999999986444 788877664
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=82.22 E-value=11 Score=32.09 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=55.0
Q ss_pred chhHhHHHHhccCCCCc--EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPNLA--QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~--~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..+..+|+.+.+. ... +|+|+-+...+...+.+++.... .+.+. .....|.+.++..+++... .+.++++
T Consensus 11 ~~l~~~l~sl~~q-~~~~~evivvDd~s~d~~~~~~~~~~~~---~~~~~-~~~~~g~~~a~n~~~~~a~---~~~v~~l 82 (202)
T cd06433 11 ETLEETIDSVLSQ-TYPNIEYIVIDGGSTDGTVDIIKKYEDK---ITYWI-SEPDKGIYDAMNKGIALAT---GDIIGFL 82 (202)
T ss_pred HHHHHHHHHHHhC-CCCCceEEEEeCCCCccHHHHHHHhHhh---cEEEE-ecCCcCHHHHHHHHHHHcC---CCEEEEe
Confidence 5788888888765 344 46666433333444555543211 23333 3445678888888877664 5888899
Q ss_pred cCCccc-CCChHHHHHHHHhc
Q 015225 115 NCDVCC-SFPLPDLLEAHKRY 134 (411)
Q Consensus 115 ~~D~i~-~~~l~~~l~~~~~~ 134 (411)
.+|... +..+..+++...+.
T Consensus 83 d~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 83 NSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCCcccCchHHHHHHHHHHhC
Confidence 999976 55577777444333
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
Probab=81.85 E-value=27 Score=29.58 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=57.7
Q ss_pred cccCCc-chhHhHHHHhccCCC---CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh--
Q 015225 31 FPLAGQ-PMIQHPISACKRIPN---LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM-- 104 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~g---i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~-- 104 (411)
+|.-|. ..|..+|+.+.+... .-+|+|+.....+...+.++. ++..+.........|-+.++..+.....
T Consensus 3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~----~~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA----AGATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH----cCCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444 577788888776421 134666654444444454443 2333333333334577788877776652
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHh
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 133 (411)
....+.++++.+|...+.+ +..+++.+.+
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1225789999999987544 6777776643
|
The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier. |
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=81.58 E-value=13 Score=31.84 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=54.9
Q ss_pred chhHhHHHHhccCCC-CcEEEEecccc-hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPN-LAQIFLIGFYE-EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~g-i~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..+..+|+.+.+... .-+|+|+-... .......++..... ...+.++......|.+.++..+.+... .+.++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~---~d~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELAT---GEFVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhc---CCEEEEE
Confidence 667778888776421 12566553322 22334444432111 224666655556678888887777654 5788899
Q ss_pred cCCcccCCC-hHHHHHHH
Q 015225 115 NCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 115 ~~D~i~~~~-l~~~l~~~ 131 (411)
.+|.....+ +..+++.+
T Consensus 91 d~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 91 DHDDELAPHALYEVVKAL 108 (202)
T ss_pred CCCCcCChHHHHHHHHHH
Confidence 999976544 78888776
|
The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.51 E-value=11 Score=37.64 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=62.2
Q ss_pred cCcccCCc-chhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhcc
Q 015225 29 PLFPLAGQ-PMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEE 106 (411)
Q Consensus 29 ~llpi~g~-pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~ 106 (411)
.++|.-|. ..+..+++.+.+... --+|+|+.....+...+.+++...+. .+++++......|-++++..+...-.
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~~~~n~Gka~AlN~gl~~a~-- 155 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-PRLRVIHLAHNQGKAIALRMGAAAAR-- 155 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEEeCCCCCHHHHHHHHHHhCC--
Confidence 56677776 668888888776511 12566664433333334444322222 24565554445577788877776543
Q ss_pred CCCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 107 NPSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 107 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|.+.+.+ +..+++.+.+.
T Consensus 156 -~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 156 -SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred -CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 5889999999987554 77777766543
|
|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
Probab=81.45 E-value=16 Score=36.39 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=61.0
Q ss_pred cCcccCCc-chhHhHHHHhccCCCCc---EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 29 PLFPLAGQ-PMIQHPISACKRIPNLA---QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 29 ~llpi~g~-pli~~~l~~l~~~~gi~---~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
.++|.-|. ..+..+++.+.++.... +|+|+-+...+...+.+++..+..+ .+.+...+...|-+.++..+.+...
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~-~v~v~~~~~~~Gka~AlN~gl~~s~ 131 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP-GLSLRYMNSDQGKAKALNAAIYNSI 131 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC-CeEEEEeCCCCCHHHHHHHHHHHcc
Confidence 34555555 78888888887652111 4666644434444444443322222 2333222334677888888887654
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|...+.+ +..+++.+.+.
T Consensus 132 ---g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 132 ---GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred ---CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 5788899999987554 78888776543
|
Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). |
| >PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins | Back alignment and domain information |
|---|
Probab=81.27 E-value=6.2 Score=30.25 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=9.6
Q ss_pred CCEECCCcEEEeeEECCCCEE
Q 015225 337 DVEIKENAVVLNSIIGWKSSL 357 (411)
Q Consensus 337 ~~~i~~~~~i~~s~i~~~~~i 357 (411)
...|+.++.|.+.+-.+.+.|
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEE
Confidence 444555555544444444433
|
|
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
Probab=80.46 E-value=13 Score=36.00 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=58.0
Q ss_pred cCcccCCc-chhHhHHHHhccCCCC-cEEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCCCh---HHHHHHHHH
Q 015225 29 PLFPLAGQ-PMIQHPISACKRIPNL-AQIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHGSA---GGLYYFRDM 102 (411)
Q Consensus 29 ~llpi~g~-pli~~~l~~l~~~~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g~~---~~l~~~~~~ 102 (411)
-++|.-|. +.|...|+.+.++... -+|+++.....+...+.+++..++++ .+++++......|.. .++..+.+.
T Consensus 45 ViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~ 124 (373)
T TIGR03472 45 VLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPH 124 (373)
T ss_pred EEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHh
Confidence 36677666 8889999998775211 24555443333332334433222232 356666544444443 344433333
Q ss_pred hhccCCCeEEEEcCCcccCCC-hHHHHHHHHhcC
Q 015225 103 IMEENPSHIILLNCDVCCSFP-LPDLLEAHKRYG 135 (411)
Q Consensus 103 i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 135 (411)
- ..+.++++.+|.....+ ++.++....+.+
T Consensus 125 a---~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 125 A---RHDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred c---cCCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 3 25889999999987554 777776664333
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 411 | ||||
| 2ggo_A | 401 | Crystal Structure Of Glucose-1-Phosphate Thymidylyl | 9e-07 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 5e-06 | ||
| 2qkx_A | 391 | N-Acetyl Glucosamine 1-Phosphate Uridyltransferase | 2e-05 | ||
| 3spt_A | 501 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 4e-05 | ||
| 3d8v_A | 495 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 4e-05 | ||
| 3foq_A | 503 | Crystal Structure Of N-Acetylglucosamine-1-Phosphat | 4e-05 | ||
| 4aaw_A | 459 | S.Pneumoniae Glmu In Complex With An Antibacterial | 2e-04 | ||
| 2ux8_A | 297 | Crystal Structure Of Sphingomonas Elodea Atcc 31461 | 2e-04 | ||
| 1hm9_A | 468 | Crystal Structure Of S.Pneumoniae N-Acetylglucosami | 3e-04 | ||
| 1jyl_A | 254 | Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt | 4e-04 | ||
| 1jyk_A | 254 | Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt | 4e-04 | ||
| 1mc3_A | 296 | Crystal Structure Of Rffh Length = 296 | 8e-04 |
| >pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391 | Back alignment and structure |
|
| >pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501 | Back alignment and structure |
|
| >pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495 | Back alignment and structure |
|
| >pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503 | Back alignment and structure |
|
| >pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial Inhibitor Length = 459 | Back alignment and structure |
|
| >pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461 Glucose- 1-phosphate Uridylyltransferase In Complex With Glucose- 1-phosphate. Length = 297 | Back alignment and structure |
|
| >pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine Length = 468 | Back alignment and structure |
|
| >pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254 | Back alignment and structure |
|
| >pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254 | Back alignment and structure |
|
| >pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 411 | |||
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 2e-28 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 4e-26 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 3e-20 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 2e-19 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 1e-14 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 1e-13 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 3e-13 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 3e-09 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 3e-08 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 3e-09 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 2e-08 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 3e-08 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 3e-08 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 8e-08 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 3e-06 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 2e-04 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 1e-07 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 3e-04 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 2e-07 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 8e-05 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 2e-07 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 5e-06 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 2e-07 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 3e-07 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 3e-07 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 3e-04 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 5e-07 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 9e-05 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 6e-07 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 1e-04 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 1e-06 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 2e-06 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 7e-06 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 2e-06 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 4e-06 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 2e-05 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 4e-05 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 5e-05 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 9e-05 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 7e-05 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 9e-05 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 5e-04 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 1e-04 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 1e-04 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 1e-04 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 2e-04 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 2e-04 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 3e-04 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 4e-04 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 4e-04 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 8e-04 |
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 66/366 (18%), Positives = 125/366 (34%), Gaps = 74/366 (20%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A I+ G G R P++ PK P+ +P+I++ I ++ ++ +
Sbjct: 3 AFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60
Query: 66 FALYVSSISNELKVPVRYLKEDKP-HGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP- 123
F + + + + G+ + + +++ D+ S
Sbjct: 61 FE--------KKLKEISIVTQKDDIKGTGAAIL------SAKFNDEALIIYGDLFFSNEK 106
Query: 124 -LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINC 182
+ +++ + ++ +KV + +G L+ D N L EKPE S+LIN
Sbjct: 107 EICNIITLKE-----NAIIGVKV--SNPKDYGVLVLD-NQNNLSKIIEKPEIPPSNLINA 158
Query: 183 GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242
G+Y D FT + D+ +I + E L D ++ +A
Sbjct: 159 GIYKLNSDIFTYL--------DKISISERGELE--------LT--------DAINLMAKD 194
Query: 243 KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGIT---SATIAGDVYI 299
++ E +W I P + + L L+ S N + I G V I
Sbjct: 195 HRVKVIEYEGYWMDIGKPWNIIDVNKWAL-------DNLVFSQNLGNVEDNVKIKGKVII 247
Query: 300 HPSAKVHPTAKIGPNVSISANVRVGAGVRL-----I--SCIVLDDVEIKENAVVLNSIIG 352
A++ I V I +G L + + VE+K S+I
Sbjct: 248 EEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVK------ESVIM 301
Query: 353 WKSSLG 358
S +
Sbjct: 302 EGSKIP 307
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-26
Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 24/229 (10%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+ G GTR RPL+ NTPK L + +P+I++ I K + I +I Y + +
Sbjct: 28 AIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQ 84
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
F + V + + + + + LY ++ + ++ +
Sbjct: 85 FDYLKE----KYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLFK---- 132
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+ T + E L+ + ++ + + I GV
Sbjct: 133 ---NMFRNDLTRSTYFSVYR--EDCTNEWFLVYGDD-YKVQDIIVDSK---AGRILSGVS 183
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234
+ I + + ++ + L V L+ +
Sbjct: 184 FWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGN 232
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 3e-20
Identities = 39/260 (15%), Positives = 78/260 (30%), Gaps = 63/260 (24%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKR-IPNLAQIFLIGFYEE- 63
AVI+ G GTR + PKPL + G +I + + I + Y +
Sbjct: 21 AVILAAG--LGTRLGGV----PKPLVRVGGCEIILRTMKLLSPHVSEF--IIVASRYADD 72
Query: 64 -REFALYVSSISNELKVPVRYLKEDKPH-GSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
F + ++ + ++ D+P G+ L ++ + + IL D S
Sbjct: 73 IDAF------LKDK-GFNYKIVRHDRPEKGNGYSLLVAKNHVEDR----FILTMGDHVYS 121
Query: 122 FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLIN 181
+E R G+ + + ++ + + + D ++
Sbjct: 122 Q---QFIEKAVRGEGVIADREPRFVDIG--EATKIRVEDG--RVAKIGKDLRE--FDCVD 172
Query: 182 CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241
G +V F + + E + LS +
Sbjct: 173 TGFFVLDDSIFEHAEK-------------LRDRE-----------------EIPLSEIVK 202
Query: 242 KKQL-YTYETMDFWEQIKTP 260
+L TY + W + T
Sbjct: 203 LARLPVTYVDGELWMDVDTK 222
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-19
Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 31/205 (15%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+IM GG KGTR + KPL L G+ +I + +S + + IF+ +
Sbjct: 3 ALIMAGG--KGTRMGGV----EKPLIKLCGRCLIDYVVSPLLK-SKVNNIFIATSPNTPK 55
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP-- 123
Y++S + K + + G L E ++++ D+
Sbjct: 56 TKEYINSAYKDYK--NIVVIDTSGKGYIEDLNECIGYFSEP----FLVVSSDLINLKSKI 109
Query: 124 LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCG 183
+ +++ IK +I P + L+
Sbjct: 110 INSIVDYFYC---------IKAKTPDVEALAVMIPKEK-------YPNPSIDFNGLVPAD 153
Query: 184 VYVFTPDFFTAIQGVLTHREDRANI 208
+ V +P + ++ E NI
Sbjct: 154 INVVSPKHGYQKEEIMVIDELIFNI 178
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-14
Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 85/281 (30%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQI---------- 55
AVI+ GG GTR + PKP+ + G+P++ H I
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWH-------------IMKMYSVHGIK 49
Query: 56 -FLI-----GFYEEREFALYVSSIS----------------NELKVPVRYLKEDKPHGSA 93
F+I G+ + FA Y +S V + +
Sbjct: 50 DFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTG 109
Query: 94 GGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQF 153
G L + + ++ + D + ++ HK +G T+ +F
Sbjct: 110 GRLKRVAEYV--KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPG----RF 163
Query: 154 GELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSS 213
G L ++ + EKP+ +IN G +V P I T +
Sbjct: 164 GALDIQAG--QVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDAT------------T 208
Query: 214 FEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFW 254
+E Q+ L LA + +L +E FW
Sbjct: 209 WE-----------------QEPLMTLAQQGELMAFEHPGFW 232
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 76/455 (16%), Positives = 146/455 (32%), Gaps = 127/455 (27%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISAC-----KRIPNLAQ 54
+A ++ GG +G+R + L+ KP G+ +I +S +RI Q
Sbjct: 10 ARDAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQ 67
Query: 55 IFLIGFYEEREFALYVS---SISNELK------VPVRYLKEDKPH---GSAGGLYYFRDM 102
Y+ ++ + +P + + G+A +Y D+
Sbjct: 68 ------YKAHSLIRHLQRGWDFFRPERNESFDILPA-SQRVSETQWYEGTADAVYQNIDI 120
Query: 103 IMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162
I P ++++L D +L+ H G T+ ++V A FG + +
Sbjct: 121 IEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKD 180
Query: 163 KELLHYTEKPETFVSDLINC-------GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFE 215
+ ++ + EKP N G+YVF F E
Sbjct: 181 E-IIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFL---------------------ME 218
Query: 216 ALQ--SATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC------- 266
A++ +A T DF + DI+ + + + F + +
Sbjct: 219 AVRRDAADPTSSRDFGK---DIIPYIVEHGKAVAH---RFADSCVRSDFEHEPYWRDVGT 272
Query: 267 -SSLY---LALFKITSPQLLASGNGITSATIAGDVY-----IHPSAKVHPTAKIGPNVS- 316
+ + + L + P L D+Y I A++ P AK +
Sbjct: 273 IDAYWQANIDLTDVV-PDL--------------DIYDKSWPIWTYAEITPPAKFVHDDED 317
Query: 317 -------------------------ISANVRVGAGVRLISCIVLDDVEIKENAVVLNSII 351
+ VR + RL + +VL V+I +A + N +I
Sbjct: 318 RRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVI 377
Query: 352 GWKSSLGRWARVQGNGDYNAKL------GITILGE 380
+ V + + +AK GI ++ +
Sbjct: 378 DHGVVIPEGLIVGEDPELDAKRFRRTESGICLITQ 412
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 68.1 bits (165), Expect = 3e-13
Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 8/182 (4%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREF 66
VI + G +RF + PK + GQ + +H +++ I
Sbjct: 3 VIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTA 60
Query: 67 ALYVSSISNEL-KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ K + G A + + + ++ + + +F
Sbjct: 61 VFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPN 120
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+ ++ L + F + +TK + +SDL + G+Y
Sbjct: 121 FVFPDISQH--SDGYLEVFQGGGDNWSFAKPEHAGSTK---VIQTAEKNPISDLCSTGLY 175
Query: 186 VF 187
F
Sbjct: 176 HF 177
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 264 LKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRV 323
+ S L K +L + I IHP+A + I P + + V
Sbjct: 100 ITSESPSLVFQKCL--ELFITPVDSGFPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHV 157
Query: 324 GAGVRLIS-CIVLDDVEIKENAVVL-NSIIGWKSSLGR 359
G+ + S ++ + E++ + +I + S+G+
Sbjct: 158 GSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGK 195
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSL 357
IHP+A +HPTA I +V I V + I +V+ S +G S +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHV-----GSACHIGSGSVIGAYSTVGEHSYI 181
Query: 358 GRWARV 363
RV
Sbjct: 182 --HPRV 185
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 252 DFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKI 311
+ L ++ YLA ++ L + IHP+A V A++
Sbjct: 86 ADADGFAGTA--LVVANPYLAYASLS--HLFDRKPKAAAG-------IHPTAIVAADAEV 134
Query: 312 GPNVSISANVRVGAGVRL-----IS--CIVLDDVEIKENAVVL-NSIIGWKSSLGR 359
P+ S+ A + +G R+ I C++ I E + + ++G
Sbjct: 135 DPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGA 190
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 252 DFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKI 311
D K+ L + YL ++ Q+L + T I PSA + TAK+
Sbjct: 64 DDLPFAKSAA--LVVKNPYLTYARMA--QILDT-------TPQPAQNIAPSAVIDATAKL 112
Query: 312 GPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARV 363
G NVSI AN + +GV L D+V I V NS IG S L WA V
Sbjct: 113 GNNVSIGANAVIESGVEL-----GDNVIIGAGCFVGKNSKIGAGSRL--WANV 158
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 292 TIAGDVYIHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLIS-CIVLDDVEIKENA 344
+ +V IHPSA VHP A IG VS I ++V++G G +L V + E+ E+
Sbjct: 3 SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESC 62
Query: 345 VVLNSIIGWKSSLGRWARVQGN 366
V++ + G N
Sbjct: 63 VLMTGAVVGDELPGYTFIGCNN 84
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 72/490 (14%), Positives = 147/490 (30%), Gaps = 160/490 (32%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISAC-----KRIPNLAQ-- 54
V+ +I+ GG GTR PL+ KP PL +I P+S C +I L Q
Sbjct: 20 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 77
Query: 55 ------------IFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPH---GSAGGLYYF 99
+G Y+ F ++V + P G+A + +
Sbjct: 78 SASLNRHLSRAYASNMGGYKNEGF----------VEVLAAQQSPENPDWFQGTADAVRQY 127
Query: 100 RDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159
+ E ++L D ++AH+ T+ + + + A FG + D
Sbjct: 128 LWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID 187
Query: 160 PNTKELLHYTEKPET---------------------FVSDLINCGVYVFTPDFFTAIQGV 198
+ ++ + EKP+ + + + G+YV + D + +
Sbjct: 188 EEGR-IIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDV---MLNL 243
Query: 199 LTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL-SPLAGKKQLYTYETMDFWEQI 257
L + AN DF +++ + ++ Y +WE I
Sbjct: 244 LRDKFPGAN-------------------DFGS---EVIPGATSLGMRVQAYLYDGYWEDI 281
Query: 258 KTPGMSLKCSSLY---LALFKITSPQLLASGNGITSATIAGDVY-----IHPSAKVHPTA 309
T ++ + Y L + K P Y I+ + P +
Sbjct: 282 GT----IE--AFYNANLGITKKPVPDF--------------SFYDRSAPIYTQPRYLPPS 321
Query: 310 KI-----------------GPNVS---ISANVRVGAGVRLISCIVLD------------- 336
K+ + + + G + +++
Sbjct: 322 KMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLL 381
Query: 337 ------DVEIKENAVVLNSIIGWKSSLGRWARVQG----------NGDYNAKLGITILGE 380
+ I +N + +II + +G ++ Y K GI + +
Sbjct: 382 AAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIK 441
Query: 381 AVTVEDEVVV 390
+ +++
Sbjct: 442 DALIPSGIII 451
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 8e-08
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 34/145 (23%)
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-----IS--CIVLDDVEIKENAVV---- 346
I SA + IG NV+I NV + G + I + + E V
Sbjct: 4 NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYND 63
Query: 347 -----LNSIIGWKSSLGRWARVQGNG--------------DYNAKLGI-TILGEAVTVED 386
IIG + + + G+ N K+G +G ++
Sbjct: 64 RINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQH 123
Query: 387 EVVVINSIVLPNKVLNVSVQEEIIL 411
V + N + + + NV V E+ I+
Sbjct: 124 HVYIGNYVNIHS---NVFVGEKSII 145
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 302 SAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL-NSIIG 352
+ +A I V I NV + V + CI+ D+V IK+ + + SI+G
Sbjct: 2 PNNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILG 54
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV-LNSI 350
+ I +A + I + I N + G V + ++ +I N + S
Sbjct: 66 NKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKV-----TIRENTKIGNNVKIGTLSD 120
Query: 351 IGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPN 398
I +G + + N +GE ++D V + +VL N
Sbjct: 121 IQHHVYIGNYVNIHSN---------VFVGEKSIIKDFVWLFPHVVLTN 159
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 299 IHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLISCIVLD-DVEI-KENAVVLNSI 350
IHP+A + P A++ V + +NV +GA + S V++ I ++N + +
Sbjct: 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYAS 84
Query: 351 IG 352
+G
Sbjct: 85 VG 86
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGW 353
+++HPTA I P + V VG IV +V I + + I G
Sbjct: 19 PGSMSRIHPTAIIEPGAQLHETVEVGPY-----AIVGSNVTIGARTTIGSHSVIEGH 70
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 299 IHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLISCIVLD-DVEI-KENAVVLNSI 350
IHPSA + A++G +V +S + ++G V + + D I + V +I
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAI 66
Query: 351 IG 352
+G
Sbjct: 67 VG 68
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 300 HPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGW 353
+ K+HP+A I + +V + A V D +I N V+ I+
Sbjct: 2 NAMKKIHPSAVIEEGAQLGDDVVIEAY-----AYVSKDAKIGNNVVIKQGARILSD 52
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 32/211 (15%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
+++ G GTR R S +TPK L LAG+ M+ H + A ++ I ++G
Sbjct: 12 DTAVLVLAAG--PGTRMR--S-DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDH 66
Query: 63 EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF 122
+R A V +++ L + +D+P G+ + + ++ ++++ + D
Sbjct: 67 QR-IAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDT---- 121
Query: 123 PL------PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK-----ELLHYTEK 171
PL DL+ H+ T+L + + +G ++ + + E +
Sbjct: 122 PLLDADTLADLIATHRAVSAAVTVLT--TTLDDPFGYGRILRTQDHEVMAIVE-----QT 174
Query: 172 ---PETFVSDLINCGVYVF-TPDFFTAIQGV 198
P +N GVY F +A+ +
Sbjct: 175 DATPSQREIREVNAGVYAFDIAALRSALSRL 205
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
G+T + I DV I +HP ++ I VG L V D +
Sbjct: 268 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 327
Query: 341 KENAVVLNSIIGWKSSLGRWAR 362
+S IG +++G +
Sbjct: 328 V-RTHGSSSSIGDGAAVGPFTY 348
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 293 IAGDVYIHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLISCIVLD-DVEI-KENA 344
I ++HP+A V A IG N + +V +G G L S +V++ +I ++N
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61
Query: 345 VVLNSIIG 352
+ + IG
Sbjct: 62 IYQFASIG 69
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 297 VYIHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLISCIVLD-DVEI-KENAVVLN 348
+ IHP+A + P A++ +V I NV + G + + + EI K N
Sbjct: 1 MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQG 60
Query: 349 SIIG 352
++IG
Sbjct: 61 AVIG 64
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 299 IHPSAKVHPTAKIGPNVS------ISANVRVGAGVRLIS-CIVLDDVEI-KENAVVLNSI 350
I +A + P A+I V I V++ GV+L + + + K + ++
Sbjct: 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAV 63
Query: 351 IG 352
+G
Sbjct: 64 LG 65
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGW 353
+K+ TA I P I+ V +G C++ D V++ E + N ++ G
Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEF-----CVIGDGVKLDEGVKLHNNVTLQGH 49
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
G+ + G + ++ I NV + V++G G L + ++ +DVEI
Sbjct: 250 EGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEI 309
Query: 341 KENAVVLNSIIGWKSSLGRWAR 362
K +V+ +SI+G K+++G ++R
Sbjct: 310 KPYSVLEDSIVGEKAAIGPFSR 331
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 9e-05
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRI 49
+ AVI+ G KGTR S + PK L +AG+PM++H I ++
Sbjct: 5 ALSAVILAAG--KGTRMY--S-DLPKVLHTIAGKPMVKHVIDTAHQL 46
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
G+ + G++ + I +V + VR+G G L +C++ DD EI
Sbjct: 253 AGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEI 312
Query: 341 KENAVVLNSIIGWKSSLGRWAR 362
V+ ++ + ++G +AR
Sbjct: 313 SPYTVLEDARLDANCTVGPFAR 334
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRI 49
+ VI+ G KGTR S + PK L PLAG+PM+QH I A ++
Sbjct: 8 SMSVVILAAG--KGTRMY--S-DLPKVLHPLAGKPMVQHVIDAAMKL 49
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACK 47
+ A+++ GG K K L P G+PM++ + A
Sbjct: 2 RPSAIVLAGG--KEAWAERFG-VGSKALVPYRGRPMVEWVLEALY 43
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 286 NGIT-----SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEI 340
NG++ + I DV I P ++ + I A + G ++ + I
Sbjct: 259 NGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI 318
Query: 341 KENAVVLNSIIGWKSSLGRWAR 362
N+++ S + ++G +A
Sbjct: 319 T-NSMIEESSVADGVTVGPYAH 339
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 7e-06
Identities = 41/212 (19%), Positives = 81/212 (38%), Gaps = 40/212 (18%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY 61
A+I+ G KGTR + S + PK L +AG M++H + I + ++G
Sbjct: 10 HSNFAIILAAG--KGTRMK--S-DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK 64
Query: 62 EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS 121
E + L ++ + + G+ + ++ E H +++ D
Sbjct: 65 AEL--------VEEVLAGQTEFVTQSEQLGTGHAVMMTEPIL-EGLSGHTLVIAGDT--- 112
Query: 122 FPL------PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK-----ELLHYTE 170
PL +L++ H + + T+L ++ +G ++ + N + E +
Sbjct: 113 -PLITGESLKNLIDFHINHKNVATILT--AETDNPFGYGRIVRNDNAEVLRIVE-----Q 164
Query: 171 K---PETFVSDLINCGVYVF-TPDFFTAIQGV 198
K IN G YVF F A++ +
Sbjct: 165 KDATDFEKQIKEINTGTYVFDNERLFEALKNI 196
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M + A I+ GG KGTR + + PK PL G+P+I H + +I +
Sbjct: 1 MSLIYAQILAGG--KGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSP 56
Query: 61 YEEREFA 67
E A
Sbjct: 57 KEWMNHA 63
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 4e-06
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 1 MEKVVAVIMV-GGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG 59
MEK V+VI++ GG +G R + + PK PL GQP+ + R+P + +I ++
Sbjct: 1 MEKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC 55
Query: 60 FYEEREFALYVSSISNELKVPVRY 83
R+ + V + +
Sbjct: 56 DPFFRD---IFEEYEESIDVDLSF 76
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
K +A+I G G RF + PK + + +++H + +R + ++
Sbjct: 4 KRKNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVS 58
Query: 61 YEEREFALYVSSISNELKV 79
E+ ++
Sbjct: 59 PEDTFADKVQTAFPQVRVW 77
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLI 58
M ++ +++ G TRF + K L P+ + +I +
Sbjct: 1 MSEMSLIMLAAG--NSTRF---NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVT 53
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 36/111 (32%)
Query: 298 YIHPSAKVHPTAKIG--------PNVSISANVRVGAGVRL-ISCIVLDDVEIKENAVVLN 348
IH SA + P+A + P V I+A ++ GV L S ++ + I E + V
Sbjct: 77 LIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSV 136
Query: 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPN 398
G G V + + INS VLPN
Sbjct: 137 -------------------------GAKCAGN-VKIGKNCFLGINSCVLPN 161
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV 346
TS+ I + I + V AK NV I N +G VL ++ + +++++
Sbjct: 118 TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGIN-----SCVLPNLSLADDSIL 170
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 Length = 337 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 3 KVVAVIMVGGPTKGTRFRPLS-FNTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLI 58
K A++M GG +G R PLS + PKP PL + +++ + + + L
Sbjct: 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLA 57
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-------ISCIVLDDVEIKENAVVLNSI 350
IHPSA V P+ ++G V++ A V + A + +V D +
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACH----- 155
Query: 351 IGWKSSLGRWARVQGNGDYNAKLGI-TILGEAVTVEDEVVV-INSIVLPN 398
+G S+L V G+ A LG+ + VT+ + +V +V+ +
Sbjct: 156 LGPASALAGGVSV---GE-RAFLGVGARVIPGVTIGADTIVGAGGVVVRD 201
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV 346
T A + D + + + P + + VS+ +G G V+ V I + +V
Sbjct: 140 TGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVG-----ARVIPGVTIGADTIV 192
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
V AV+ G G R + PK + Q +++H + A P + ++ +
Sbjct: 7 DVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPG 61
Query: 63 EREFA 67
+ FA
Sbjct: 62 DSRFA 66
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
+VVA++ G G R PK + L GQ +I+ + + + + +
Sbjct: 7 EVVAIVPAAG--SGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPAD 61
Query: 63 EREFA 67
+ A
Sbjct: 62 RTDEA 66
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
VAV+ G G R R PK L G P+++H +S + + +I +
Sbjct: 2 ATVAVVPAAG--SGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPA 56
Query: 63 EREFA 67
+ +
Sbjct: 57 LTDES 61
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 2e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-ISCIVLDDVEIKENAVV 346
IHP+A V A+IG + I V + G + C + +V + +
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRI 54
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFL 57
VA+++ G KG R N PK + G+ + ++P+S + + + +
Sbjct: 13 MNVAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVI 62
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 35/240 (14%), Positives = 65/240 (27%), Gaps = 57/240 (23%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL--AGQPMIQHPISAC------------ 46
K ++ G G+R+ + K L + G ++ + +
Sbjct: 3 AMKPTLFVLAAG--MGSRYG-----SLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVI 55
Query: 47 -KRIPNLAQIFLIGFYEER---EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDM 102
+ ++ YE R E E +KP G+ + RD
Sbjct: 56 RHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFS--CPEGREKPWGTNHAVLMGRDA 113
Query: 103 IMEENPSHIILLNCD---VCCSFP-----LPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154
I E ++N D F L L Y +G + +S G
Sbjct: 114 IRE----PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRG 169
Query: 155 ELIADPNTKEL----LHYTEKPETFV--------------SDLINCGVYVFTPDFFTAIQ 196
D E+ + + ++ ++ FTPD+F +
Sbjct: 170 VCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSE 229
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSS 356
I P A + +IG N I N + G ++ + I NAV +G +++
Sbjct: 92 ARIEPGAIIRDHVEIGDNAVIMMNATINIG-----AVIGEGSMIDMNAV-----LGGRAT 141
Query: 357 LGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLP 397
+G+ V + + V VED+VV+ N +VL
Sbjct: 142 VGKNCHVGAGAVLAGVIE-PPSAKPVIVEDDVVIGANVVVLE 182
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Length = 336 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 5 VAVIMVGGPTKGTRFRPLS-FNTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLI 58
A+I+ GG G RF PLS TPK L G + +++ + + ++
Sbjct: 3 KALILAGG--SGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVV 56
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 8e-04
Identities = 15/71 (21%), Positives = 23/71 (32%)
Query: 288 ITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL 347
S +A A V A I + I NV V L + + +EN ++
Sbjct: 265 FASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYII 324
Query: 348 NSIIGWKSSLG 358
NS +
Sbjct: 325 NSRLERNCVTA 335
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 411 | |||
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 100.0 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.98 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.97 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.95 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.95 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.94 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.93 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.92 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.92 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.89 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.88 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.88 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.88 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.83 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.82 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.82 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.81 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.8 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.79 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.79 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.79 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.76 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.76 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.74 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.73 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.71 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.71 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.7 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.7 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.7 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.68 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.66 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.66 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.65 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.65 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.64 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.63 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.62 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.62 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.61 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.61 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.61 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.61 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.6 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.6 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.6 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.6 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.6 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.59 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.59 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.58 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.58 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.58 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.58 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.57 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.56 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.56 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.56 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.56 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.55 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.54 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.54 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.54 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.54 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.53 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.53 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.53 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.52 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.52 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.52 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.52 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.5 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.5 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.5 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.5 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.5 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.49 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.49 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.49 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.49 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.48 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.48 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.48 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.48 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.47 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.47 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.46 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.46 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.46 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.45 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.45 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.45 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.44 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.43 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.43 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.43 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.43 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.43 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.42 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.42 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.41 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.39 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.39 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.38 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.38 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.36 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.34 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.34 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.34 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.34 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.33 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.31 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.31 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.3 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.3 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.29 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 99.28 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.27 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.27 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.26 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.25 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.25 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 99.24 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.24 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.23 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.22 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.22 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.21 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.2 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.2 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 99.2 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 99.19 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 99.17 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.14 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.13 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.1 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.08 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.07 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.07 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.05 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.98 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.97 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.9 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.86 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.76 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.74 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.72 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.67 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.65 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.5 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.38 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.04 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 97.61 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.19 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 92.05 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 90.1 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 89.86 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 89.33 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 88.4 |
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=381.44 Aligned_cols=344 Identities=18% Similarity=0.285 Sum_probs=271.7
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| .|+||+|+|..+||+|+|++|+ |||+|++++|.++ ++++|+|+++++.+.+.+++.+. |+.
T Consensus 10 m~~~~avILAaG--~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~---~~~ 83 (420)
T 3brk_X 10 ARDAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNS-GIRRIGVATQYKAHSLIRHLQRG---WDF 83 (420)
T ss_dssp GGGEEEEEEECC--CCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHH---SCC
T ss_pred hhceEEEEEcCC--CCCccchhhcCCcccccccCCCCcHHHHHHHHHHhC-CCCeEEEEeCCChHHHHHHHhhh---hcc
Confidence 456899999999 9999999999999999999999 9999999999997 89999999988777888888763 332
Q ss_pred -------ceEEeeCC----CC---CCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEec
Q 015225 80 -------PVRYLKED----KP---HGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 80 -------~i~~v~~~----~~---~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
.+.++... .. .|++++++.+++++.....++|++++||++++.++..+++.|.+.++++++++.+.
T Consensus 84 ~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 84 FRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp CCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred ccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 24444322 12 79999999999988533347899999999988899999999998888888888876
Q ss_pred CcccccceeEEEEcCCCCceeEEeccCCCcc-------cCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhh
Q 015225 146 SAESAHQFGELIADPNTKELLHYTEKPETFV-------SDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEAL 217 (411)
Q Consensus 146 ~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~-------~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (411)
+.+++..||++..| ++++|+.|.|||.... +.+.++|+|+|++++| +.+.+.....
T Consensus 164 ~~~~~~~~g~v~~d-~~g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~--------------- 227 (420)
T 3brk_X 164 PRMEATGFGVMHVN-EKDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADP--------------- 227 (420)
T ss_dssp ETTGGGGSEEEEEC-TTSBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------------
T ss_pred CccccCcccEEEEC-CCCcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccC---------------
Confidence 44567789999988 6899999999986543 6789999999999976 4554322110
Q ss_pred hhcccCCCCceeeeccchhhcccCCCceEEEee-----------cceeeecCCccchhhcchHHHhhhhhcCccccccCC
Q 015225 218 QSATRTLPVDFVRLDQDILSPLAGKKQLYTYET-----------MDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGN 286 (411)
Q Consensus 218 ~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~-----------~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~ 286 (411)
.+.+.+..++++.++++++++++.. +++|.+|+|+++|+++++.+++.... ..++..
T Consensus 228 --------~~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~--~~~~~~-- 295 (420)
T 3brk_X 228 --------TSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPD--LDIYDK-- 295 (420)
T ss_dssp -----------------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCS--SCTTCC--
T ss_pred --------CccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCch--hhcCCC--
Confidence 0112233688888887779999998 88999999999999999888765422 111111
Q ss_pred CCCCcEEcCCcEECCCCEECC-----CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCc
Q 015225 287 GITSATIAGDVYIHPSAKVHP-----TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361 (411)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~v~~-----~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~ 361 (411)
...+...+.+++.+.+++ ++.+ .++.||++|+| +++.|.+|+||++|+||++|.|.+|+|+++|.||++|
T Consensus 296 ---~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~ 370 (420)
T 3brk_X 296 ---SWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHA 370 (420)
T ss_dssp ---SSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTC
T ss_pred ---CCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCC
Confidence 122334455666666665 7777 48999999999 8999999999999999999999999999999999999
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEEcce
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINS 393 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~ 393 (411)
.|.+ |+||+++.|+++++|.++
T Consensus 371 ~i~~----------~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 371 QLSN----------VVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp EEEE----------EEECTTCEECTTCEESSC
T ss_pred EEec----------eEECCCCEECCCCEEeCC
Confidence 9987 999999999999999443
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-48 Score=383.91 Aligned_cols=365 Identities=16% Similarity=0.284 Sum_probs=267.8
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc-cCC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN-ELK 78 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~-~~~ 78 (411)
|++|+||||||| +|+||+|+|..+||+|+|++|+ |||+|++++|.++ ++++|+|++++..+.+.+++.+.+. .++
T Consensus 18 ~~~~~avILAaG--~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~ 94 (451)
T 1yp2_A 18 SRSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMG 94 (451)
T ss_dssp HHHEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC----
T ss_pred ccceEEEEECCC--CCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHhhhhhcccc
Confidence 567999999999 9999999999999999999999 9999999999997 9999999998877778888865210 111
Q ss_pred -----cceEEee--C-----CCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecC
Q 015225 79 -----VPVRYLK--E-----DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVS 146 (411)
Q Consensus 79 -----~~i~~v~--~-----~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~ 146 (411)
..+.++. + ....|++++++.+++++.....++|++++||++++.++..+++.|++.++++++++.+..
T Consensus 95 ~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~ 174 (451)
T 1yp2_A 95 GYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMD 174 (451)
T ss_dssp ----CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred cccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcC
Confidence 1133432 1 124799999999999885333588999999999888999999999988888898888764
Q ss_pred cccccceeEEEEcCCCCceeEEeccCCCc---------------------ccCcccceEEEeCHHHH-HHhhhhhhcccc
Q 015225 147 AESAHQFGELIADPNTKELLHYTEKPETF---------------------VSDLINCGVYVFTPDFF-TAIQGVLTHRED 204 (411)
Q Consensus 147 ~~~~~~~g~v~~d~~~~~v~~~~e~~~~~---------------------~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~ 204 (411)
.+++..||++..| ++++|+.|.|||... .++++++|+|+|++++| +.+.+..+.
T Consensus 175 ~~~~~~~g~v~~d-~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 250 (451)
T 1yp2_A 175 EKRATAFGLMKID-EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG--- 250 (451)
T ss_dssp HHHHTTSEEEEEC-TTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT---
T ss_pred hhhcccCCEEEEC-CCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc---
Confidence 3467789999998 789999999998632 24678999999999987 455543211
Q ss_pred cccccccchhhhhhhcccCCCCceeeeccchhhcccCC-CceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccc
Q 015225 205 RANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLA 283 (411)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~ 283 (411)
..++..++++.++++ .+++++..+++|.+++++++|+++++.++++... ...+..
T Consensus 251 -----------------------~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~-~~~~~~ 306 (451)
T 1yp2_A 251 -----------------------ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVP-DFSFYD 306 (451)
T ss_dssp -----------------------CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSC-SSCSCC
T ss_pred -----------------------ccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhccccc-chhccC
Confidence 112335777777765 6899999999999999999999999888765421 011111
Q ss_pred cC-------CCCCCcEEc----CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCC---------------
Q 015225 284 SG-------NGITSATIA----GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDD--------------- 337 (411)
Q Consensus 284 ~~-------~~~~~~~~~----~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~--------------- 337 (411)
.. ...+.+.+. .++.||+++.|+. +.|. +++||++|.||++|+|.++++..+
T Consensus 307 ~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~-~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 384 (451)
T 1yp2_A 307 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK 384 (451)
T ss_dssp SSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE-SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTT
T ss_pred CCCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe-ccEECCCCEECCCCEEcCceEECCCCccccccccccccc
Confidence 10 001222220 2355555555553 5555 899999999999999998888777
Q ss_pred ----CEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcE-E-cceEEcCCCEE
Q 015225 338 ----VEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVV-V-INSIVLPNKVL 401 (411)
Q Consensus 338 ----~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~-v-~~~~i~~~~~v 401 (411)
+.||++|.|.+++||++|.||+++.|.++..- .+...||++++||.+++ | .+++|++|++|
T Consensus 385 g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~---~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 385 GSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNV---QEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TCCCSEECTTCEEESEEECTTCEECTTCEECCSSCC---SCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CceeEEECCCCEEeccEeCCCcEECCCCEEeCCccc---ccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 99999999999999999999999999875221 12246788888888763 3 46777777654
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-47 Score=379.43 Aligned_cols=373 Identities=16% Similarity=0.223 Sum_probs=281.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| +||||+|+| ||+|+||+|+|||+|+|++|.++ |+++|+|++++..+.+++++.+..+.++.++.
T Consensus 12 ~~~vvILAaG--~GtRm~~~~---pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 85 (501)
T 3st8_A 12 DTAVLVLAAG--PGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDHQRIAPLVGELADTLGRTID 85 (501)
T ss_dssp CEEEEEEECS--CCGGGCCSS---CGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTHHHHHHHHHHHHHHHTSCCE
T ss_pred CceEEEECCc--CcccCCCCC---CHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEE
Confidence 4788999999 999999954 99999999999999999999997 99999999999999999999876566788999
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
|+.|+++.||++|++.+++++.....+.+++++||.+. ...+..++++|++.++++++++++. +++..||.+..|
T Consensus 86 ~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~--~dp~~yG~i~~~- 162 (501)
T 3st8_A 86 VALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTL--DDPFGYGRILRT- 162 (501)
T ss_dssp EEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEEC-
T ss_pred EEEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeecc--CCchhccccccc-
Confidence 99999999999999999999975446789999999875 4568999999999999999999998 899999999999
Q ss_pred CCCceeEEeccCCC----cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 161 NTKELLHYTEKPET----FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 161 ~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
++++|..+.|+++. ...++.++|+|+|+++.|..+.+... ..+...+||+ ++++
T Consensus 163 ~~g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~---~~n~~~e~yl-------------------td~i 220 (501)
T 3st8_A 163 QDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLS---SNNAQQELYL-------------------TDVI 220 (501)
T ss_dssp TTCCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCC---CCSTTCSCCT-------------------THHH
T ss_pred cceeEEeeccccCCChhhccceeeeceeeeecchhHHHhhhhhc---ccccccccch-------------------hhHH
Confidence 89999999998754 34678999999999988765544322 1122233332 6777
Q ss_pred hcccCCC-ceEEEeecceeeecCCc--cchhhcchHHHhhhhh----c-----Ccc-ccccCC--------CCCCcEEcC
Q 015225 237 SPLAGKK-QLYTYETMDFWEQIKTP--GMSLKCSSLYLALFKI----T-----SPQ-LLASGN--------GITSATIAG 295 (411)
Q Consensus 237 ~~l~~~~-~v~~~~~~~~~~~I~t~--~d~~~a~~~~l~~~~~----~-----~~~-~~~~~~--------~~~~~~~~~ 295 (411)
..+...+ .+..+.....|...+.. ..+..+...+..+... . .+. .....+ ......+.+
T Consensus 221 ~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g 300 (501)
T 3st8_A 221 AILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLG 300 (501)
T ss_dssp HHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEET
T ss_pred HHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecC
Confidence 6665444 67777766655544333 2333332222221111 0 000 000000 001111111
Q ss_pred C---------------------------------cEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECC
Q 015225 296 D---------------------------------VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKE 342 (411)
Q Consensus 296 ~---------------------------------~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~ 342 (411)
. ..+++++.+++.+.|+++++|++++.||.++.+++|+||++|.|++
T Consensus 301 ~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~ 380 (501)
T 3st8_A 301 RTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPH 380 (501)
T ss_dssp TCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEE
T ss_pred ccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEec
Confidence 1 2244555666777777888899999999999999999999999999
Q ss_pred CcEEEeeEECCCCEECCCcEEecCCcCCcccc-eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 343 NAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG-ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 343 ~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~-~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
.+++.+++||++|.||+++.+.+.. ...+ .++||++|+||.++.| .+|.|++|++|++++|+..
T Consensus 381 ~~~i~d~~Ig~~v~IG~g~i~~n~d---g~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~ 452 (501)
T 3st8_A 381 LTYVGDADIGEYSNIGASSVFVNYD---GTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGA 452 (501)
T ss_dssp SCEEESEEECSSCEECTTCEEECBC---SSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTC
T ss_pred cceecCceEcCCCEECCCEEEEccc---CCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCC
Confidence 9999999999999999999886621 1111 2788888888887765 6899999999999999864
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=367.49 Aligned_cols=357 Identities=19% Similarity=0.320 Sum_probs=277.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| .|+||+|+|...||+|+|++|+|||+|++++|.++ ++++|+|+++++ +++++.+.. .++.+
T Consensus 1 m~aiIlA~G--~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~-~~~~i~vv~~~~---i~~~~~~~~----~~i~~ 70 (401)
T 2ggo_A 1 MKAFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKC-GIRDITVIVSSK---NKEYFEKKL----KEISI 70 (401)
T ss_dssp CEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGG---GHHHHHHHC----TTCEE
T ss_pred CeEEEEcCc--CccccCcccCCCCcceeeECCEeHHHHHHHHHHHC-CCCEEEEEeCHH---HHHHhhccC----CcEEE
Confidence 689999999 99999999999999999999999999999999997 899999998765 566766531 14566
Q ss_pred eeCCC-CCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--CChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 84 LKEDK-PHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--FPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 84 v~~~~-~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
+.+.. ..|++++++.+.+ .+++++++||+++. .+++.+++ .+++++++.+. .++..|+.+..|
T Consensus 71 ~~~~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~--~~~~~~~~v~~~- 136 (401)
T 2ggo_A 71 VTQKDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV--SNPKDYGVLVLD- 136 (401)
T ss_dssp EECCTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC--SCCSSSCEEEEC-
T ss_pred EeCCCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc--CCCcceeEEEEC-
Confidence 66655 6789988876654 37899999999975 45666654 35677888777 666778888888
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
+++++..+.|+|..+.+.+.++|+|+|++++|+.+.+.... ..+.+.+ .++++.+
T Consensus 137 ~~g~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~-----------------------~~~~~~~-~~~~~~~- 191 (401)
T 2ggo_A 137 NQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISIS-----------------------ERGELEL-TDAINLM- 191 (401)
T ss_dssp TTSSEEEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCC-----------------------SSSCBCH-HHHHHHH-
T ss_pred CCCeEEEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcC-----------------------CCCceEH-HHHHHHH-
Confidence 67899999999877778899999999999999887543211 0122334 5677766
Q ss_pred CC-CceEEEeecceeeecCCccchhhcchHHHhhhhhc------CccccccC--------CCCCCcEEcCCcEECCCCEE
Q 015225 241 GK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKIT------SPQLLASG--------NGITSATIAGDVYIHPSAKV 305 (411)
Q Consensus 241 ~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~------~~~~~~~~--------~~~~~~~~~~~~~i~~~~~v 305 (411)
.. .++..+..+++|.+|+||+||..+++.+++++... ++.....+ .....+.+.++++||+++.|
T Consensus 192 ~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I 271 (401)
T 2ggo_A 192 AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEI 271 (401)
T ss_dssp HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEE
T ss_pred HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEE
Confidence 44 47888988889999999999999999888765411 11111000 01245666777888888888
Q ss_pred CCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc----CCcc---------
Q 015225 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD----YNAK--------- 372 (411)
Q Consensus 306 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~----~~~~--------- 372 (411)
+++|+|+++++||++|.||++|.|.+|+|++++.|++++.+.+++||++|.||+++.+.+... ++..
T Consensus 272 ~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~ 351 (401)
T 2ggo_A 272 GPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSG 351 (401)
T ss_dssp CSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECS
T ss_pred CCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEec
Confidence 889999888999999999999999999999999999999999999999999999999973111 1100
Q ss_pred --cceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 373 --LGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 373 --~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
.+.++||++|+||.+++| .+|+|++|++|++++|+..
T Consensus 352 ~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~ 397 (401)
T 2ggo_A 352 RRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGE 397 (401)
T ss_dssp CSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTC
T ss_pred ccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccccCCCc
Confidence 013777777777777766 5788999999999998754
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=355.67 Aligned_cols=362 Identities=20% Similarity=0.292 Sum_probs=244.2
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++|.||||||| .|+||++ .+||+|+|++|+|||+|+++.|.++ ++++|+|++++..+.+++++.+. .+
T Consensus 7 ~~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~-~~~~i~vv~~~~~~~i~~~~~~~------~~ 74 (459)
T 4fce_A 7 SSMSVVILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKL-GAQHVHLVYGHGGELLKKTLADP------SL 74 (459)
T ss_dssp CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCHHHHHHHC-----------
T ss_pred CcceEEEECCC--CCccCCC---CCCcccCeeCCeeHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHhccC------Cc
Confidence 36899999999 9999997 7899999999999999999999997 89999999988777777777542 34
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.++.+....|++++++.+++++. ..+++++++||.++ ..++..+++.|.+ .+++++..+. .++..|+++..|
T Consensus 75 ~~v~~~~~~g~~~~i~~~~~~~~--~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~--~~~~~~g~v~~~ 148 (459)
T 4fce_A 75 NWVLQAEQLGTGHAMQQAAPHFA--DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKL--DNPSGYGRIVRE 148 (459)
T ss_dssp CEEECSSCCCHHHHHHHHGGGSC--TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEEC--SCCTTSCEEEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHhcC--CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEec--CCCCcccEEEeC
Confidence 56666777899999999999885 24899999999953 6678899888754 4567777776 777889998887
Q ss_pred CCCCceeEEeccCC----CcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 160 PNTKELLHYTEKPE----TFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 160 ~~~~~v~~~~e~~~----~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
++++..+.|+|. ...+.+.++|+|+|+++.+ +.+....... ..+.+.+ ++
T Consensus 149 --~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d 203 (459)
T 4fce_A 149 --NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNN----------------------AQGEFYI-TD 203 (459)
T ss_dssp --TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCS----------------------TTCSCCT-TH
T ss_pred --CCcEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccc----------------------cCCcEEH-HH
Confidence 689999998753 3456789999999999865 5544321110 1122223 77
Q ss_pred hhhcccCC-CceEEEeeccee--eecCCccchhhcchHHHhhhhhcCccccccC---CCCCCcEEcCCcEECCCCEECCC
Q 015225 235 ILSPLAGK-KQLYTYETMDFW--EQIKTPGMSLKCSSLYLALFKITSPQLLASG---NGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 235 ~l~~l~~~-~~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
+++.+.+. .++..+..+++| .+|+||+||..++..+.++.... ++..+ ..+....+.+++.||+++.|+++
T Consensus 204 ~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~---l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~ 280 (459)
T 4fce_A 204 IIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEK---LLLAGVMLLDPSRFDLRGELTHGRDITIDTN 280 (459)
T ss_dssp HHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHH---HHHHTCEESCGGGEEEEEEEEECSSCEECTT
T ss_pred HHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHH---HHhCCcEEeCCCeEEEeCcEEECCCcEECCC
Confidence 88877765 489999988766 56899999999986665443211 00000 01122334444445555555555
Q ss_pred CEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc--------------------
Q 015225 309 AKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD-------------------- 368 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~-------------------- 368 (411)
|.|.+++.||++|.|+++|+|.+++||++|.|+.+|+|.+++||++|.||+++.|..+..
T Consensus 281 ~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~ 360 (459)
T 4fce_A 281 VIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGK 360 (459)
T ss_dssp EEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECT
T ss_pred eeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcC
Confidence 555444455555555555555444444444444444444444444444444443332100
Q ss_pred ----------------CCccc-------------c-eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 369 ----------------YNAKL-------------G-ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 369 ----------------~~~~~-------------~-~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+++.+ + .++||++|+||.+++| .+|+|++|++|++++|+..
T Consensus 361 ~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~ 438 (459)
T 4fce_A 361 GSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENE 438 (459)
T ss_dssp TCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTC
T ss_pred CCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCC
Confidence 00111 0 3788888888888776 5899999999999998754
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=352.60 Aligned_cols=342 Identities=18% Similarity=0.291 Sum_probs=267.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
-+||||||| .|+||++ .+||+|+|++|+|||+|++++|.++ ++++|+|++++..+.+.+++.+ .+.+
T Consensus 12 ~~~vIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~~~i~~~~~~-------~i~~ 78 (468)
T 1hm9_A 12 NFAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-------QTEF 78 (468)
T ss_dssp EEEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTHHHHHHSSSS-------SSEE
T ss_pred CcEEEEcCC--CCccCCC---CCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCHHHHHHHhCC-------CcEE
Confidence 479999999 9999986 7899999999999999999999997 8999999998776666665542 3566
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. ..++|++++||.++ +.+++.+++.|.+.+++++++..+. .++..|+.+..| +
T Consensus 79 v~~~~~~G~~~sl~~a~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~--~~~~~~g~v~~d-~ 154 (468)
T 1hm9_A 79 VTQSEQLGTGHAVMMTEPILEG-LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRN-D 154 (468)
T ss_dssp EECSSCCCHHHHHHTTHHHHTT-CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEEC-T
T ss_pred EeCCccCChHHHHHHHHHHhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEecc--CCCCceeEEEEC-C
Confidence 6677778999999999998851 24789999999963 6679999999988888888888887 777889998888 6
Q ss_pred CCceeEEeccCC----CcccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPE----TFVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~----~~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
+++|..+.|+|. ...+.+.++|+|+|+++ +++.+.+..... . .+.+.+ ++++
T Consensus 155 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~---------------------~-~~~~~~-~d~~ 211 (468)
T 1hm9_A 155 NAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNN---------------------A-QGEYYI-TDVI 211 (468)
T ss_dssp TCCEEEEECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCS---------------------T-TCSCCT-THHH
T ss_pred CCCEEEEEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhcccc---------------------C-CCeEEH-HHHH
Confidence 889999999864 23467899999999998 456655432110 0 011223 7888
Q ss_pred hcccCCC-ceEEEeecceeee--cCCccchhhcchHHHhhhhhc----CccccccCCCCCCcEEcCCcEECCCCEECCCC
Q 015225 237 SPLAGKK-QLYTYETMDFWEQ--IKTPGMSLKCSSLYLALFKIT----SPQLLASGNGITSATIAGDVYIHPSAKVHPTA 309 (411)
Q Consensus 237 ~~l~~~~-~v~~~~~~~~~~~--I~t~~d~~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~ 309 (411)
+.+++.+ +++++..+++|.+ +++++||..++..+..+.... ...+.. +..+.+.+++.|++++.|++++
T Consensus 212 ~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~i~~~~~i~~~~ 287 (468)
T 1hm9_A 212 GIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVN----PEATYIDIDVEIAPEVQIEANV 287 (468)
T ss_dssp HHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESC----GGGCEECTTCEECTTCEECSSC
T ss_pred HHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEC----CCeeEECCCcEECCCCEECCCc
Confidence 8887654 8999999999987 559999999988776554221 111111 1245677888999999999999
Q ss_pred EECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcE
Q 015225 310 KIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVV 389 (411)
Q Consensus 310 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ 389 (411)
.|.+++.||++|+|+++|.|.++.||++|.|+ ++.|.+++||+++.||+++.|..+ ++||+++.|+.++.
T Consensus 288 ~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~ig~~~~Ig~~~~ 357 (468)
T 1hm9_A 288 ILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPN---------SSLGAQVHIGNFVE 357 (468)
T ss_dssp EEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSS---------CEECTTCEEEEEEE
T ss_pred EECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecC---------cEECCccEECCCcE
Confidence 99999999999999999999999999999999 999999999999999999988865 77777776666555
Q ss_pred EcceEEcCCC
Q 015225 390 VINSIVLPNK 399 (411)
Q Consensus 390 v~~~~i~~~~ 399 (411)
+.++.|++++
T Consensus 358 i~~~~Ig~~~ 367 (468)
T 1hm9_A 358 VKGSSIGENT 367 (468)
T ss_dssp EESCEECTTC
T ss_pred EeeeEEcCCc
Confidence 5444444443
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=341.38 Aligned_cols=343 Identities=21% Similarity=0.286 Sum_probs=266.8
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
+++.||||||| .|+||++ .+||+|+|++|+|||+|+++.|.++ ++++++|+++++.+.+++++.+. .+
T Consensus 4 ~~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~------~~ 71 (456)
T 2v0h_A 4 KALSAVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQL-GSENIHLIYGHGGDLMRTHLANE------QV 71 (456)
T ss_dssp CCEEEEEECCC--CCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHT-TCSCEEEEECTTHHHHHHHTTTC------CC
T ss_pred CcceEEEECCC--CCcccCC---CCCccccEECCccHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHhhcC------Cc
Confidence 46789999999 9999986 7899999999999999999999997 89999999988777777776542 35
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.++.++...|++++++.+++++.. .+++++++||.++ ..+++.+++.|.+ ++++++..+. .++..|+.+..|
T Consensus 72 ~~v~~~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~--~~~~~~g~v~~~ 145 (456)
T 2v0h_A 72 NWVLQTEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNL--DNPTGYGRIIRE 145 (456)
T ss_dssp EEEECSCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEEC--SSCTTSCEEEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeec--CCCCccceEEEc
Confidence 666667778999999999988742 4789999999964 5678999988765 5677777776 667778988877
Q ss_pred CCCCceeEEeccCCC----cccCcccceEEEeCHHH-HHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 160 PNTKELLHYTEKPET----FVSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
++++..+.|++.. ....+.++|+|+|+++. ++.+.+..... ..+.+.+ ++
T Consensus 146 --~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d 200 (456)
T 2v0h_A 146 --NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNN----------------------AQGEYYL-TD 200 (456)
T ss_dssp --TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCS----------------------TTCCCCG-GG
T ss_pred --CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhcccc----------------------ccccEEH-HH
Confidence 6899999988642 23568899999999985 45554322110 0112223 67
Q ss_pred hhhcccCCC-ceEEEeecce--eeecCCccchhhcchHHHhhhhhcCccccccCC---CCCCcEEcCCcEECCCCEECCC
Q 015225 235 ILSPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSSLYLALFKITSPQLLASGN---GITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 235 ~l~~l~~~~-~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
+++.+...+ ++..+..+++ |.+|+||+||..++..+..+... .++..+. .+..+.+.+++.||+++.|+++
T Consensus 201 ~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~ 277 (456)
T 2v0h_A 201 LIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQAS---KLLLEGVMIYDPARFDLRGTLEHGKDVEIDVN 277 (456)
T ss_dssp HHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHH---HHHHTTCEESCGGGEEEEEEEEECSSCEECSS
T ss_pred HHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHH---HHHHcCCEEECCCccEEcCceEECCCCEEcCC
Confidence 787776554 7999988664 56889999999998766544321 1111110 1235678888999999999999
Q ss_pred CEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCc
Q 015225 309 AKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEV 388 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 388 (411)
|.|++++.||++|.|+++|.|.+++||++|.|+++|+|.+++||+++.|++++.+..+ ++||+++.||+++
T Consensus 278 ~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~---------~~ig~~~~ig~~~ 348 (456)
T 2v0h_A 278 VIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPG---------AELAAETHVGNFV 348 (456)
T ss_dssp EEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTT---------CEECTTCEEEEEE
T ss_pred cEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCC---------CEECCCCEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999876 7788777777766
Q ss_pred EEcceEEcCCC
Q 015225 389 VVINSIVLPNK 399 (411)
Q Consensus 389 ~v~~~~i~~~~ 399 (411)
.+.++.+++++
T Consensus 349 ~i~~~~i~~~~ 359 (456)
T 2v0h_A 349 EIKKSTVGKGS 359 (456)
T ss_dssp EEESCEECTTC
T ss_pred EEeccEECCCC
Confidence 55444444443
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=278.65 Aligned_cols=240 Identities=18% Similarity=0.294 Sum_probs=202.6
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---c---
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---E--- 76 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~--- 76 (411)
.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+++++.+.+. .
T Consensus 2 ~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 78 (281)
T 3juk_A 2 IKKCLFPAAG--YGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEA-GCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQG 78 (281)
T ss_dssp CCEEEEECCS--CCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHH-TCCEEEEEECTTHHHHHHHTSCCC--------
T ss_pred ceEEEEECCc--CCcccCccccCCCcccceECCEEHHHHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhcchhhhhhhhc
Confidence 4899999999 99999999999999999999999999999999997 9999999999888889998875311 0
Q ss_pred --------------CCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCC-----hHHHHHHHHhcCCe
Q 015225 77 --------------LKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP-----LPDLLEAHKRYGGM 137 (411)
Q Consensus 77 --------------~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-----l~~~l~~~~~~~~~ 137 (411)
++.++.++.+....|++++++.+++++. +++|+|++||++++.+ +..+++.|.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~---~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~- 154 (281)
T 3juk_A 79 TNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG---NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC- 154 (281)
T ss_dssp CCHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC---SSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-
T ss_pred ccchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC---CCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-
Confidence 2456778888888999999999999985 4789999999998777 9999999988777
Q ss_pred eEEEEEecCcccccceeEEEEcCC--CC--ceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhccccccccccc
Q 015225 138 GTMLVIKVSAESAHQFGELIADPN--TK--ELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQV 211 (411)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~v~~d~~--~~--~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~ 211 (411)
+++++...+.++++.||++..| + ++ +|..+.|||. ...+.+.++|+|+|++++|+.+.+....
T Consensus 155 ~~v~~~~~~~~~~~~~g~v~~~-~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~---------- 223 (281)
T 3juk_A 155 SIVAIEEVALEEVSKYGVIRGE-WLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPG---------- 223 (281)
T ss_dssp CEEEEEECCTTTGGGSEEEEEE-EEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCC----------
T ss_pred CEEEEEEechhhcccCCEEEec-cCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCC----------
Confidence 6777777655678899999887 5 67 9999999986 4557889999999999999887653110
Q ss_pred chhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 212 SSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
..+.+.+ +++++.+++++++++|..+++|.||+||++|+++++.++...
T Consensus 224 -------------~~~e~~l-~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~~ 272 (281)
T 3juk_A 224 -------------KNNEIQI-TDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272 (281)
T ss_dssp -------------GGGSCCH-HHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred -------------CCCceeH-HHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhch
Confidence 0123335 788888887789999999999999999999999999887654
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=268.13 Aligned_cols=236 Identities=21% Similarity=0.327 Sum_probs=202.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i 81 (411)
.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ ++++|+|++++. .+.+.+++.+. +.|+.++
T Consensus 24 ~m~aiIlAaG--~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~~~~~~~~~-~~~~~~i 99 (269)
T 4ecm_A 24 AMKGIILAGG--TGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQC-DITDIMIITGKEHMGDVVSFLGSG-QEFGVSF 99 (269)
T ss_dssp CEEEEEECCS--CCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred CcEEEEECCC--CccccccccCCCCceecEECCEEHHHHHHHHHHHC-CCCEEEEECChhhHHHHHHHHhhc-cccCceE
Confidence 5899999999 99999999999999999999999999999999997 899999998864 36677887753 4567788
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
.++.+....|++++++.+++++. +++|++++||+++..++..+++.|.+.++++++++.+. .++..||++..|
T Consensus 100 ~~~~~~~~~G~~~al~~a~~~~~---~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-- 172 (269)
T 4ecm_A 100 TYRVQDKAGGIAQALGLCEDFVG---NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSV--DDPERFGVANIQ-- 172 (269)
T ss_dssp EEEECSSCCCHHHHHHTTHHHHT---TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEEC--SCGGGSEEEEEE--
T ss_pred EEeeCCccCcHHHHHHHHHHhcC---CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEEC--CCCCCceEEEEc--
Confidence 88888788899999999999885 58999999999999999999999998888899998887 678889999988
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|+.+.|||..+.+.+.++|+|+|++++|+.+.+..+. ..+.+.+ .++++.+++
T Consensus 173 ~g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----------------------~~ge~~l-~d~l~~l~~ 228 (269)
T 4ecm_A 173 NRKIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPS-----------------------ARGELEI-TDINNWYLK 228 (269)
T ss_dssp TTEEEEEEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBC-----------------------TTSCBCH-HHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCC-----------------------CCCeeeH-HHHHHHHHH
Confidence 4899999999977778899999999999999877654211 0122334 788888887
Q ss_pred CCceEEEeecceeeecCCccchhhcchHHHhh
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
.+++.++..+++|.+|+||++|.++++.+++.
T Consensus 229 ~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~ 260 (269)
T 4ecm_A 229 RGVLTYNEMSGWWTDAGTHVSLQRANALARDI 260 (269)
T ss_dssp TTCEEEEECCSCEEECSSHHHHHHHHHHTTTC
T ss_pred cCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhc
Confidence 88999999999999999999999998776543
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=259.33 Aligned_cols=239 Identities=18% Similarity=0.264 Sum_probs=193.7
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------ 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------ 75 (411)
+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++..+ |+++|+|++++..+.+.+++...+.
T Consensus 7 ~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 83 (302)
T 2e3d_A 7 KVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLE 83 (302)
T ss_dssp SCCEEEEECCS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC
T ss_pred cccEEEEECCc--CcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHhcchhhhhhhh
Confidence 45899999999 99999999999999999999999999999999997 8999999998877888888865210
Q ss_pred ---------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC-----C---ChHHHHHHHH
Q 015225 76 ---------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS-----F---PLPDLLEAHK 132 (411)
Q Consensus 76 ---------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~-----~---~l~~~l~~~~ 132 (411)
.++.++.++.+....|++++++.+++++. +++|++++||++++ . ++..+++.|.
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~ 160 (302)
T 2e3d_A 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_dssp ----CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC---SSCEEEECTTEEECTTSSCTTTSTHHHHHHHHH
T ss_pred hccchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC---CCcEEEEcCCccccCccccchHHHHHHHHHHHH
Confidence 13556777777788899999999999885 47899999999986 2 7999999998
Q ss_pred hcCCeeEEEEEecCcccccceeEEEEcC---CCC---ceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccc
Q 015225 133 RYGGMGTMLVIKVSAESAHQFGELIADP---NTK---ELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHRED 204 (411)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~v~~d~---~~~---~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~ 204 (411)
+.++ +++++.+. ++++.||++..+. +++ +|..+.|||. ...+.+.++|+|+|++++|+.+.+..+..
T Consensus 161 ~~~~-~~i~~~~~--~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~-- 235 (302)
T 2e3d_A 161 ETGH-SQIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGA-- 235 (302)
T ss_dssp HHCC-EEEEEEEC--SCGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----
T ss_pred hcCC-cEEEEEEc--cCCCCccEEEecccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCC--
Confidence 7776 67777776 7778899887631 245 8999999985 34567899999999999998876532110
Q ss_pred cccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhh
Q 015225 205 RANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
.+.+.+ +++++.+++++++.++..+++|.||+||++|++++..++..
T Consensus 236 ---------------------~~~~~l-~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~ 282 (302)
T 2e3d_A 236 ---------------------GDEIQL-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIR 282 (302)
T ss_dssp -----------------------CCCH-HHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred ---------------------CCceeh-HHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 011223 67777777667999999999999999999999999666543
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=259.09 Aligned_cols=242 Identities=18% Similarity=0.249 Sum_probs=177.2
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------ 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------ 75 (411)
+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+.+++...+.
T Consensus 13 ~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 89 (297)
T 2ux8_A 13 PLRKAVFPVAG--LGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGKSALEDHFDIAYELEATMA 89 (297)
T ss_dssp CCCEEEEEECC--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHTSCCHHHHHHHH
T ss_pred CccEEEEECCC--CccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhhhhhhhhhh
Confidence 46899999999 99999999999999999999999999999999997 9999999998877788888764210
Q ss_pred -------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC---CChHHHHHHHHhcCCeeE
Q 015225 76 -------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS---FPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 76 -------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~---~~l~~~l~~~~~~~~~~~ 139 (411)
..+.++.++.+....|++++++.+++++. +++|++++||++++ .++..+++.|.+.++ .+
T Consensus 90 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~ 165 (297)
T 2ux8_A 90 ARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG---DEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NL 165 (297)
T ss_dssp TTTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC---SSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EE
T ss_pred hccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC---CCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CE
Confidence 03456788777778899999999999885 58999999999975 569999999987765 46
Q ss_pred EEEEecCcccccceeEEEEcC-CCC--ceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchh
Q 015225 140 MLVIKVSAESAHQFGELIADP-NTK--ELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSF 214 (411)
Q Consensus 140 ~~~~~~~~~~~~~~g~v~~d~-~~~--~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 214 (411)
+++.+.+.++++.||++..|. +++ +|..|.|+|. ...+.+.++|+|+|++++|+.+.+..+..
T Consensus 166 i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~------------ 233 (297)
T 2ux8_A 166 ICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGA------------ 233 (297)
T ss_dssp EEEC-----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC---------------
T ss_pred EEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCC------------
Confidence 666554334667788876651 144 8999999884 34567899999999999988876543210
Q ss_pred hhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 215 EALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
.+.+.+ +++++.++++++++++..+++|.||+||++|.+++..++...
T Consensus 234 -----------~~~~~l-~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~ 281 (297)
T 2ux8_A 234 -----------GGEIQL-TDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSR 281 (297)
T ss_dssp ----------------C-CTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHC
T ss_pred -----------CCeeEH-HHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcC
Confidence 012224 678888887789999999999999999999999997776543
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=252.94 Aligned_cols=236 Identities=18% Similarity=0.281 Sum_probs=195.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~~i 81 (411)
+|+||||||| .|+||+|+|...||+|+|++|+|||+|+++.|..+ |+++|+|++ +++.+.+++++.+. ++|+.++
T Consensus 2 ~~~aIILAgG--~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i 77 (293)
T 1fxo_A 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDG-SNWGLDL 77 (293)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred CceEEEECCC--CCCcCccccCCCCceeCeECCEeHHHHHHHHHHHC-CCCEEEEEeccccHHHHHHHHhcc-cccCceE
Confidence 4899999999 99999999999999999999999999999999997 899998776 55667788888764 3467778
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
.++.++...|+++++..+++++. +++++++.||.++ +.++..+++.|.+.+..++++..++ .++..||++..|
T Consensus 78 ~~~~~~~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~~g~v~~d- 151 (293)
T 1fxo_A 78 QYAVQPSPDGLAQAFLIGESFIG---NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFD- 151 (293)
T ss_dssp EEEECSSCCCGGGHHHHTHHHHT---TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC--SCGGGSEEEEEC-
T ss_pred EEeeCCCCCCHHHHHHHHHHHhC---CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC--CCcccCcEEEEC-
Confidence 88887778899999999999885 4788888999985 6789999999977777778887777 778889999998
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
+++++..+.|||..+.+.+.++|+|+|++++++.+.+..+.. .+.+.+ +|+++.++
T Consensus 152 ~~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~-----------------------~ge~~~-td~~~~~l 207 (293)
T 1fxo_A 152 QGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSP-----------------------RGELEI-TDVNRAYL 207 (293)
T ss_dssp TTSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCT-----------------------TSSCCH-HHHHHHHH
T ss_pred CCCcEEEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCccc-----------------------CCceeH-HHHHHHHH
Confidence 789999999999777788999999999999988776532110 112223 67777777
Q ss_pred CCCceEEEeec-ce-eeecCCccchhhcchHHHh
Q 015225 241 GKKQLYTYETM-DF-WEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 241 ~~~~v~~~~~~-~~-~~~I~t~~d~~~a~~~~l~ 272 (411)
+.+++.++... ++ |.|++|++||.+++..+..
T Consensus 208 ~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 241 (293)
T 1fxo_A 208 ERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT 241 (293)
T ss_dssp HTTCEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred hcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHHH
Confidence 77777777664 65 9999999999999876644
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=249.98 Aligned_cols=236 Identities=18% Similarity=0.281 Sum_probs=194.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecc-cchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF-YEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~-~~~~~i~~~~~~~~~~~~~~i 81 (411)
.|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.|..+ ++++|+|++. ++.+.+++++.+. ++|+.++
T Consensus 3 ~m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~Iivv~~~~~~~~i~~~l~~g-~~~g~~i 78 (295)
T 1lvw_A 3 HMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDG-SQFGVRF 78 (295)
T ss_dssp SCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTSEE
T ss_pred ceEEEEECCC--CCCccccccCCCCceecEECCeeHHHHHHHHHHHC-CCCeEEEEeccchHHHHHHHhhhc-cccCceE
Confidence 4899999999 99999999999999999999999999999999997 8999998764 6667788888764 3467778
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
.++.+....|+++++..+++++. +++++++.||.++ +.++..+++.|.+.+..++++..++ .++..||++..|
T Consensus 79 ~~~~~~~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~~g~v~~d- 152 (295)
T 1lvw_A 79 SYRVQEEPRGIADAFIVGKDFIG---DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFD- 152 (295)
T ss_dssp EEEECSSCCCGGGHHHHTHHHHT---TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC--SCCTTSEEEEEC-
T ss_pred EEeeCCCCCChHHHHHHHHHHhC---CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEEC--CCcccCCEEEEC-
Confidence 88877778899999999999885 4678888899985 6789999999977677778888777 677789999988
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++++|+.+.|||..+.+.+.++|+|+|++++++.+.+..+. ..+.+.+ +++++.++
T Consensus 153 ~~g~v~~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~-----------------------~~ge~~~-td~~~~~l 208 (295)
T 1lvw_A 153 SEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPS-----------------------DRGELEI-TSVNEEYL 208 (295)
T ss_dssp TTSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCC-----------------------TTSCCCH-HHHHHHHH
T ss_pred CCCcEEEEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCc-----------------------ccCceeH-HHHHHHHH
Confidence 78999999999977777899999999999998877653211 0112223 67777777
Q ss_pred CCCceEEEeec-ce-eeecCCccchhhcchHHHh
Q 015225 241 GKKQLYTYETM-DF-WEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 241 ~~~~v~~~~~~-~~-~~~I~t~~d~~~a~~~~l~ 272 (411)
+.+++.++... ++ |.|++|++||.+++..+..
T Consensus 209 ~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (295)
T 1lvw_A 209 RMGKLRVELMGRGMAWLDTGTHDGLLEASSFIET 242 (295)
T ss_dssp HTTCEEEEEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence 77777776664 65 9999999999999876644
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=256.47 Aligned_cols=242 Identities=17% Similarity=0.214 Sum_probs=194.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCccc--CCcchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL--AGQPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNEL 77 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi--~g~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~ 77 (411)
||+|.||||||| .|+||+| ||+|+|+ +|+|||+|+++++..+ ++++|+|++++. .+.+++++.+. ..+
T Consensus 3 ~m~~~~vIlAaG--~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~-~~~ 73 (303)
T 3pnn_A 3 AMKPTLFVLAAG--MGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTK-YEG 73 (303)
T ss_dssp CCCCEEEEECTT--CBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHH-HTT
T ss_pred CCceEEEEECCC--CcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHH-hcc
Confidence 778999999999 9999998 7999999 5999999999999996 999999999887 47899998864 335
Q ss_pred CcceEEeeCC---------------CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCC-hHHHHHHHHh---cCCee
Q 015225 78 KVPVRYLKED---------------KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP-LPDLLEAHKR---YGGMG 138 (411)
Q Consensus 78 ~~~i~~v~~~---------------~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~---~~~~~ 138 (411)
+.++.++.+. +..|++++++.++++++ ++|+|++||.+++.+ ++.++++|.+ .++++
T Consensus 74 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~----~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~ 149 (303)
T 3pnn_A 74 RIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR----EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEY 149 (303)
T ss_dssp TSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC----SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEE
T ss_pred CCcEEEEecccccccccccccccccccCCcHHHHHHHHHhcC----CCEEEEECCeecCHHHHHHHHHHHHHhccccCce
Confidence 6678887765 57899999999999883 789999999998765 8999999976 56788
Q ss_pred EEEEEecCcccc-cce-----eEEEEcCCCCceeEEeccCCC-------------------cccCcccceEEEeCHHHHH
Q 015225 139 TMLVIKVSAESA-HQF-----GELIADPNTKELLHYTEKPET-------------------FVSDLINCGVYVFTPDFFT 193 (411)
Q Consensus 139 ~~~~~~~~~~~~-~~~-----g~v~~d~~~~~v~~~~e~~~~-------------------~~~~~~~~Giyi~~~~~~~ 193 (411)
++++.+. .++ +.| |++..| ++++|+.|.|||.. +.+.++++|+|+|++++|+
T Consensus 150 ~v~~~~~--~~~~~~~g~~~~G~v~~d-~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~ 226 (303)
T 3pnn_A 150 CMVGYRV--GNTLSESGGVSRGVCQVD-EKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFD 226 (303)
T ss_dssp EEEEEEG--GGSCBTTBCEEEEEEEEC-TTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHH
T ss_pred EEEEEEC--CCccCccCceeeeeEeeC-CCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHH
Confidence 8888887 555 556 578888 78999999999853 2577999999999999999
Q ss_pred HhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC--ceEEEeecceeeecCCccchhhcchHHH
Q 015225 194 AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK--QLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~--~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
.+.+.+....... ... ..+.+.+ +++++.+++.+ ++.++..+++|.+|++|++|.++++.+.
T Consensus 227 ~l~~~~~~~l~~~--------------~~~-~~~e~~l-~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~ 290 (303)
T 3pnn_A 227 YSEELFINFLNAH--------------GQE-PKSEFFI-PFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLR 290 (303)
T ss_dssp HHHHHHHHHHHHH--------------TTC-SSCCCCH-HHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--------------CCC-cCCcEEh-HHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHH
Confidence 8876322110000 000 1122334 78898888776 7999999999999999999999988776
Q ss_pred hhh
Q 015225 272 ALF 274 (411)
Q Consensus 272 ~~~ 274 (411)
+..
T Consensus 291 ~~~ 293 (303)
T 3pnn_A 291 ELT 293 (303)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-32 Score=252.70 Aligned_cols=237 Identities=19% Similarity=0.262 Sum_probs=195.1
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecc-cchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF-YEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~-~~~~~i~~~~~~~~~~~~~~i 81 (411)
.|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.|..+ ++++|+|++. ++.+.+++++.+. ++++.++
T Consensus 3 ~m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i 78 (296)
T 1mc3_A 3 HMKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDG-SEFGIQL 78 (296)
T ss_dssp CCEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred ccEEEEECCC--CCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhC-CCCcEEEEechhHHHHHHHHHhcc-cccCceE
Confidence 4899999999 99999999999999999999999999999999997 8999998774 6667788888764 3467778
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
.++.++...|+++++..+++++. +++++++.||.++ +.++..+++.|.+.+..++++..++ .++..||++..|
T Consensus 79 ~~~~~~~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~yg~v~~d- 152 (296)
T 1mc3_A 79 EYAEQPSPDGLAQAFIIGETFLN---GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFD- 152 (296)
T ss_dssp EEEECSSCCCSTHHHHHTHHHHT---TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEE-
T ss_pred EEeccCCCCCHHHHHHHHHHHhC---CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEEC--CCcccCCEEEEC-
Confidence 88877778899999999999885 4678888899985 6789999999976667778887777 777889999888
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++++|..+.|||..+.+.+.++|+|+|++++++.+.+..+. ..+.+.+ +++++.++
T Consensus 153 ~~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~-----------------------~~ge~~~-td~~~~~l 208 (296)
T 1mc3_A 153 DNFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPS-----------------------ERGELEI-TSINQMYL 208 (296)
T ss_dssp TTEEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCC-----------------------SSSSCCH-HHHHHHHH
T ss_pred CCCcEEEEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCcc-----------------------ccCCccH-HHHHHHHH
Confidence 78999999999977778899999999999998877653211 0122233 67777777
Q ss_pred CCCceEEEeec-ce-eeecCCccchhhcchHHHhh
Q 015225 241 GKKQLYTYETM-DF-WEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 241 ~~~~v~~~~~~-~~-~~~I~t~~d~~~a~~~~l~~ 273 (411)
+.+++.++... ++ |.|++|+++|.+++..+...
T Consensus 209 ~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~~ 243 (296)
T 1mc3_A 209 EAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQTV 243 (296)
T ss_dssp HTTCEEEEECCTTCEEEECCSHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHHH
Confidence 77777777665 65 99999999999998766543
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=246.00 Aligned_cols=229 Identities=20% Similarity=0.345 Sum_probs=176.3
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCCc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELKV 79 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~~ 79 (411)
+|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ ++++|+|+++++.+.+++++.+... .+..
T Consensus 2 ~~~avIlAaG--~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~ 78 (259)
T 1tzf_A 2 ASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVTF 78 (259)
T ss_dssp CCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEEE
T ss_pred CcEEEEECCC--CcccCCCccCCCCccccEECCEEHHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHhhcccccccccc
Confidence 4899999999 99999999999999999999999999999999997 8999999998887888888876321 1110
Q ss_pred -----------------ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEE
Q 015225 80 -----------------PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLV 142 (411)
Q Consensus 80 -----------------~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~ 142 (411)
.+.+..+....|++++++.+++++. .+++|++++||.+++.++.++++.|.+.++.+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~ 156 (259)
T 1tzf_A 79 HMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK--DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA 156 (259)
T ss_dssp EGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT--TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEE
T ss_pred cccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC--CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEE
Confidence 1223334456799999999998883 247899999999988899999999988787777654
Q ss_pred EecCcccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhccc
Q 015225 143 IKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATR 222 (411)
Q Consensus 143 ~~~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
. .+++.||++..| +++|..+.|||... ..+.++|+|+|++++|+.+.+.
T Consensus 157 ~----~~~~~~g~v~~~--~g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~------------------------ 205 (259)
T 1tzf_A 157 T----FPPGRFGALDIQ--AGQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDND------------------------ 205 (259)
T ss_dssp E----CCCCCSEEEEEE--TTEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCST------------------------
T ss_pred e----cCCCCccEEEEc--CCEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhccc------------------------
Confidence 3 346779988888 68999999998643 5689999999999987544210
Q ss_pred CCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHh
Q 015225 223 TLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 223 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
...+..++++.+++++++.++..+++|.+|+|++||.+++..+..
T Consensus 206 -----~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 206 -----ATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp -----TCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred -----ccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence 112336677777767799999999999999999999999877654
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=243.43 Aligned_cols=229 Identities=16% Similarity=0.209 Sum_probs=173.2
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhcc-CCCCcEEEEecccchHHHHHHHhhhcccCCcc--eE
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKR-IPNLAQIFLIGFYEEREFALYVSSISNELKVP--VR 82 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~--i~ 82 (411)
+|||||| .|+||+|+|..+||+|+|++|+|||+|+++++.. + |+++|+|++++..+ +++++.+..+.++.+ ..
T Consensus 2 ~iIlAaG--~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~-gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (255)
T 4evw_A 2 IVIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYF-ASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYI 77 (255)
T ss_dssp EEEECCS--CCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGT-TTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEE
T ss_pred EEEEcCC--CCcccccCCCCCCccccEECCeEHHHHHHHHHhccC-CCceEEEEECchhh-hHHHHHHHHHHcCCCCceE
Confidence 7999999 9999999999999999999999999999999999 6 89999988887655 555665433333321 24
Q ss_pred EeeCCCCCCChHHHHHHHHHhhc---cCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIME---ENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~---~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
++.+....|++++++.+++++.+ ..+++|+|++||+++ +.++..+ ..++++++++++. .++ .||++..
T Consensus 78 ~~~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~--~~p-~yG~v~~ 149 (255)
T 4evw_A 78 AELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQG--GGD-NWSFAKP 149 (255)
T ss_dssp EEESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEEC--CSS-CSCEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEec--CCC-ceeEEEE
Confidence 55577889999999999999831 125789999999987 5666553 2456778888887 454 8999999
Q ss_pred cCCCC--ceeEEeccCCCcccCcccceEEEeCHH--HHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 159 DPNTK--ELLHYTEKPETFVSDLINCGVYVFTPD--FFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 159 d~~~~--~v~~~~e~~~~~~~~~~~~Giyi~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
| +++ +|+.+.||+ +.++++++|+|+|++. +++.+.+....... . +.+++ +.+ +|
T Consensus 150 d-~~g~~~V~~i~EK~--~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~--~---------------~~~gE-~~l-td 207 (255)
T 4evw_A 150 E-HAGSTKVIQTAEKN--PISDLCSTGLYHFNRKEDYLEAYREYVARPSQ--E---------------WERGE-LYI-AP 207 (255)
T ss_dssp S-STTCCBEEEEESSS--CSSSEEEEEEEEESCHHHHHHHHHHHHTSCGG--G---------------CSCSC-CCS-TT
T ss_pred C-CCCCeEEEEEEecc--CccCcEEEeEEEECcHHHHHHHHHHHHhcccc--c---------------ccCCe-Eeh-HH
Confidence 8 667 999999994 3478999999999985 33444443221100 0 00112 223 89
Q ss_pred hhhcccCCC-ceEEEeec-ceeeecCCccchhhcch
Q 015225 235 ILSPLAGKK-QLYTYETM-DFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 235 ~l~~l~~~~-~v~~~~~~-~~~~~I~t~~d~~~a~~ 268 (411)
+++.+++.+ ++.++..+ ++|.++++|++|.++..
T Consensus 208 ~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~ 243 (255)
T 4evw_A 208 LYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR 243 (255)
T ss_dssp HHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence 999887665 78999875 89999999999988753
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=252.40 Aligned_cols=242 Identities=16% Similarity=0.241 Sum_probs=190.2
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------ 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------ 75 (411)
+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++..+ |+++|+|++++..+.+.+++.....
T Consensus 11 ~~~~aVIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~ 87 (323)
T 2pa4_A 11 AVKTVVVPAAG--LGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNKAGVLAHFERSSELEETLM 87 (323)
T ss_dssp -CCEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHTTSCCHHHHHHHH
T ss_pred cceEEEEECCC--CccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcHHHHHHHHhccchhhhhhh
Confidence 34899999999 99999999999999999999999999999999997 9999999998877778887754210
Q ss_pred --------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--CChHHHHHHHHhcCCeeE
Q 015225 76 --------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--FPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 76 --------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--~~l~~~l~~~~~~~~~~~ 139 (411)
.++.++.++.+....|++++++.+++++.. .++.|++++||++++ .++..+++.|.+.++ .+
T Consensus 88 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~ 165 (323)
T 2pa4_A 88 ERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SV 165 (323)
T ss_dssp HTTCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EE
T ss_pred ccchhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cE
Confidence 023467777777778999999999988752 123499999999985 679999999987665 46
Q ss_pred EEEEecCcccccceeEEEEcC---CCC--ceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccc
Q 015225 140 MLVIKVSAESAHQFGELIADP---NTK--ELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVS 212 (411)
Q Consensus 140 ~~~~~~~~~~~~~~g~v~~d~---~~~--~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~ 212 (411)
+++.+.+.++.+.||++..|+ +++ +|..|.|||. ...+.+.++|+|+|++++|+.+.+.....
T Consensus 166 i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~---------- 235 (323)
T 2pa4_A 166 LCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGA---------- 235 (323)
T ss_dssp EEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCG----------
T ss_pred EEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCC----------
Confidence 666666445677899887651 233 8999999984 44567889999999999998876542110
Q ss_pred hhhhhhhcccCCCCceeeeccchhhcccCC-CceEEEeecceeeecCCccchhhcchHHHh
Q 015225 213 SFEALQSATRTLPVDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
.+.+.+ +++++.++++ .++.++..+++|.||+||++|.+++..++.
T Consensus 236 -------------~ge~~l-~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~ 282 (323)
T 2pa4_A 236 -------------GGELQL-TDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGL 282 (323)
T ss_dssp -------------GGCCCH-HHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHH
T ss_pred -------------CCeEeH-HHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhh
Confidence 012223 6788877766 689999999999999999999999977654
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=234.93 Aligned_cols=250 Identities=16% Similarity=0.225 Sum_probs=158.5
Q ss_pred CC-ceEEEEEecCCCCCcccccCCC-CCCccCccc-CCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhccc
Q 015225 1 ME-KVVAVIMVGGPTKGTRFRPLSF-NTPKPLFPL-AGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNE 76 (411)
Q Consensus 1 m~-~~~aiIla~G~~~g~rl~plt~-~~pK~llpi-~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~ 76 (411)
|+ +|+||||||| .|+||+|+|. ..||+|+|+ +|+|||+|+++++..+ +++|+|++++.. +.+++++.+.
T Consensus 1 m~~~~~avIlAgG--~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~--- 73 (308)
T 2qh5_A 1 MSLKIKNILLSGG--SGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNE--- 73 (308)
T ss_dssp --CCEEEEEECC---------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTT---
T ss_pred CCCccEEEEEcCC--CCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHh---
Confidence 43 5899999999 9999999997 899999999 5999999999999994 899999888753 5677777652
Q ss_pred CCc-ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCC-hHHHHHH---HHhcCCeeEEEEEecCcccc
Q 015225 77 LKV-PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFP-LPDLLEA---HKRYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 77 ~~~-~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~-l~~~l~~---~~~~~~~~~~~~~~~~~~~~ 150 (411)
++. ++.++.++...|++++++.+++++. .++.|++++||.++ +.+ +..+++. |.+.++.+|+.+.+. .++
T Consensus 74 ~~~~~~~~i~~~~~~gt~~al~~a~~~l~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~ 149 (308)
T 2qh5_A 74 IKNKSVGFLLESLSKNTANAIALSALMSD--KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSID--KPN 149 (308)
T ss_dssp CSSCEEEEEEESSCCCHHHHHHHHHHTSC--TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECS--SCC
T ss_pred hCCCccEEEeCCCCCChHHHHHHHHHHhC--CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecC--CCC
Confidence 555 5667767777899999999998873 23459999999997 555 8899887 666777888888776 666
Q ss_pred cceeEEEEcCCCCceeEEeccCCCcc--------cCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcc
Q 015225 151 HQFGELIADPNTKELLHYTEKPETFV--------SDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSAT 221 (411)
Q Consensus 151 ~~~g~v~~d~~~~~v~~~~e~~~~~~--------~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (411)
+.||++..| ++++|+.|.|||.... +.++++|+|+|+++.| +.+.+..+...+.... ..+...
T Consensus 150 ~~~g~i~~d-~~~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~-------~~~~~~ 221 (308)
T 2qh5_A 150 TEFGYIESP-NGLDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCER-------AFESLE 221 (308)
T ss_dssp TTSEEEECS-SSSBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHH-------HGGGCE
T ss_pred CCceEEEEC-CCCEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHH-------Hhhccc
Confidence 789999877 6789999999986421 4688999999999874 6665543221110000 000000
Q ss_pred cC--CCCceeeeccchhh--------c-ccCC-CceEEEeecceeeecCCccchhhcchH
Q 015225 222 RT--LPVDFVRLDQDILS--------P-LAGK-KQLYTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 222 ~~--~~~~~~~l~~d~l~--------~-l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
.. ...+..++..++++ . ++++ .+++++..+++|.||+|+++|.+++..
T Consensus 222 ~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~ 281 (308)
T 2qh5_A 222 NAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAAN 281 (308)
T ss_dssp EECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC-------------
T ss_pred cccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhc
Confidence 00 00011122233333 2 4544 589999999999999999999988753
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=218.92 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=159.2
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+|.||||||| .|+||+|+|...||+|+|++|+|||+|+++++..+ ++++|+|++++..+.+.++... ++..+.
T Consensus 25 ~~~aiIlAaG--~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~----~~~~iv 97 (254)
T 1jyk_A 25 RVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKEK----YGVRLV 97 (254)
T ss_dssp CCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHHH----HCCEEE
T ss_pred CceEEEECCC--CcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHh----CCcEEE
Confidence 5889999999 99999999999999999999999999999999997 8999999988765555544332 343333
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCC-hHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP-LPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADP 160 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~ 160 (411)
...+....|++++++.+++.+. ++++++||+++..+ +..++ +.+..+++ .. .++ ..|+++ .|
T Consensus 98 ~~~~~~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~~----~~~~~~t~---~~--~~~~~~~~v~-~d- 161 (254)
T 1jyk_A 98 FNDKYADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRNDL----TRSTYFSV---YR--EDCTNEWFLV-YG- 161 (254)
T ss_dssp ECTTTTTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSCC----CSEEEEEC---EE--SSCSSCCEEE-EC-
T ss_pred ECCCccCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHHH----hCCceEEE---Ec--ccCCCCeEEE-EC-
Confidence 2222345789999998888763 48899999997444 33322 22222222 22 222 357754 77
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++++|+.+.|++. ..+.++|+|+|+++.++.+.+..+.........+++ + .++++.+.
T Consensus 162 ~~g~v~~~~e~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~------------------~-~d~~~~l~ 219 (254)
T 1jyk_A 162 DDYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLY------------------W-DNMVKDNI 219 (254)
T ss_dssp TTCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCC------------------T-THHHHTTG
T ss_pred CCCeEEEEEECCC---CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccC------------------H-HHHHHHHH
Confidence 6889999999753 468899999999986665555443221111111111 2 66777776
Q ss_pred CCCceEEEeec-ceeeecCCccchhhcchHHH
Q 015225 241 GKKQLYTYETM-DFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 241 ~~~~v~~~~~~-~~~~~I~t~~d~~~a~~~~l 271 (411)
++.++.++..+ ++|.+|+|++||.++++.+.
T Consensus 220 ~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~ 251 (254)
T 1jyk_A 220 KELDVYVEELEGNSIYEIDSVQDYRKLEEILK 251 (254)
T ss_dssp GGCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred hhCCeEEEEecCCeEEEcCCHHHHHHHHHHhh
Confidence 77789998877 69999999999999987553
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=213.18 Aligned_cols=228 Identities=14% Similarity=0.152 Sum_probs=174.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.||||||| .|+|| | ||+|+|++|+|||+|+++.+..+ ++++|+|++. .+.+.+++.+ ++.++.
T Consensus 2 ~~~aiIlA~G--~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~-~~~~ivVv~~--~~~i~~~~~~----~g~~v~ 66 (252)
T 3oam_A 2 SFTVVIPARY--QSTRL-P-----GKPLADIGGKPMIQWVYEQAMQA-GADRVIIATD--DERVEQAVQA----FGGVVC 66 (252)
T ss_dssp CEEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEES--CHHHHHHHHH----TTCEEE
T ss_pred ceEEEEecCc--CCCCC-C-----CcceeeECCEEHHHHHHHHHHhC-CCCeEEEECC--HHHHHHHHHH----cCCEEE
Confidence 5899999999 99999 3 79999999999999999999997 8999999885 3567777764 566777
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccce-----eE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQF-----GE 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----g~ 155 (411)
+..++...|+++ +..+.+.+.....+.|++++||.++ ..++..+++.|.+.++++++++++. +++..| +.
T Consensus 67 ~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v--~~~~~~~~p~~g~ 143 (252)
T 3oam_A 67 MTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEI--EDEAEVFNPNAVK 143 (252)
T ss_dssp ECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEE--CCHHHHTCTTSCE
T ss_pred EcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeec--CCHHHhhCCCceE
Confidence 766677788887 5566666631125789999999964 6679999999988888889898887 666667 88
Q ss_pred EEEcCCCCceeEEeccCCC-------------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhccc
Q 015225 156 LIADPNTKELLHYTEKPET-------------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATR 222 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~~~-------------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
|..| ++++++.|.++|-. +.+.+.++|+|+|++++|+.+.+..+....+
T Consensus 144 vv~d-~~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~----------------- 205 (252)
T 3oam_A 144 VITD-KSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEK----------------- 205 (252)
T ss_dssp EEEC-TTSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHH-----------------
T ss_pred EEEC-CCCeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccc-----------------
Confidence 9999 78999999987521 2367899999999999998877643221000
Q ss_pred CCCCceeeeccchhhcccCCCceEEEeec-ceeeecCCccchhhcchHHHhh
Q 015225 223 TLPVDFVRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 223 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
.+ . -+.+..+..+.++.++... .+|.+||||+|+.++++.+.++
T Consensus 206 ---~E--~--le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 206 ---IE--C--LEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp ---HH--T--CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ---cc--h--hHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 00 0 1233434455689988654 4789999999999998766543
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=219.66 Aligned_cols=236 Identities=15% Similarity=0.249 Sum_probs=168.9
Q ss_pred eEEEEEecCCCCCcccccCC-CCCCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLS-FNTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt-~~~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~ 80 (411)
|++|||||| .|+||+|+| ...||+|+|++| +|||+|+++++..+.++++|+|++++. .+.+.+++.+.. .
T Consensus 2 m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~-~---- 74 (336)
T 2x65_A 2 MKALILAGG--SGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELP-D---- 74 (336)
T ss_dssp CEEEEECCC--BCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSC-G----
T ss_pred eEEEEECCC--CCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccc-c----
Confidence 789999999 999999999 679999999999 999999999999854799999998876 356777776531 1
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC--Ch----HHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF--PL----PDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~--~l----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
..++.++...|+++++..+...+. .++.+++++||+++.. ++ ..+++.|.+.++.+|+...+. ...+.||
T Consensus 75 ~~ii~e~~~~gta~ai~~a~~~~~--~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~--~~~~~yG 150 (336)
T 2x65_A 75 ENIIAEPMKKNTAPACFIGTKLAD--DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPT--RPETGYG 150 (336)
T ss_dssp GGEEEESSCCCHHHHHHHHHTTSC--TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCC--SCCSSSE
T ss_pred ceEEeCCCCCCcHHHHHHHHHhhC--CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecc--cCCCCce
Confidence 123445567899999998887552 2467999999999743 44 444455666567777777665 4557899
Q ss_pred EEEEcCCC-----CceeEEeccCCCcc--------cCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhc
Q 015225 155 ELIADPNT-----KELLHYTEKPETFV--------SDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSA 220 (411)
Q Consensus 155 ~v~~d~~~-----~~v~~~~e~~~~~~--------~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (411)
++..| ++ ++|..|.|||.... ..++++|+|+|+++.| +.+.+..+...+.....
T Consensus 151 ~I~~~-~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~----------- 218 (336)
T 2x65_A 151 YIEIG-EELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDV----------- 218 (336)
T ss_dssp EEEEE-EEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTC-----------
T ss_pred EEEEC-CccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHh-----------
Confidence 99877 33 68999999986421 2478999999999876 67665433211100000
Q ss_pred ccCCCCceeeeccchhhc---------ccC-CCceEEEeecceeeecCCccchhhc
Q 015225 221 TRTLPVDFVRLDQDILSP---------LAG-KKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 221 ~~~~~~~~~~l~~d~l~~---------l~~-~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
...+. .|..+.++. +.+ ..++++++.+++|.|++++++|+++
T Consensus 219 ---~~~~e-~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 219 ---DPRNF-EELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp ---CTTCH-HHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred ---hhhhh-hHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 00010 111333332 333 4689999999999999999999887
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=217.31 Aligned_cols=234 Identities=16% Similarity=0.234 Sum_probs=164.2
Q ss_pred CCceEEEEEecCCCCCcccccCC-CCCCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLS-FNTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNEL 77 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt-~~~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~ 77 (411)
|+ |.+|||||| .|+||+|+| ...||+|+|++| +|||+|+++++..+.++++++|++++.. +.+.+++.+
T Consensus 1 M~-m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~----- 72 (337)
T 2cu2_A 1 MK-TYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG----- 72 (337)
T ss_dssp CC-EEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS-----
T ss_pred CC-eEEEEEcCC--CcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc-----
Confidence 54 899999999 999999999 589999999999 9999999999998547999999988653 344444432
Q ss_pred CcceEEeeCCCCCCChHHHHHHHHHhhcc-CCCeEEEEcCCcccCC--ChHHHHHH----HHhcCCeeEEEEEecCcccc
Q 015225 78 KVPVRYLKEDKPHGSAGGLYYFRDMIMEE-NPSHIILLNCDVCCSF--PLPDLLEA----HKRYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 78 ~~~i~~v~~~~~~g~~~~l~~~~~~i~~~-~~~~~lv~~~D~i~~~--~l~~~l~~----~~~~~~~~~~~~~~~~~~~~ 150 (411)
..+ +.++...|++.++..+.. +... .++.+++++||+++.. .+..+++. |.+ ++.+|+...+. ...
T Consensus 73 -~~~--i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~--~~~ 145 (337)
T 2cu2_A 73 -IRL--LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPT--RPE 145 (337)
T ss_dssp -SEE--EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCS--SCC
T ss_pred -Cce--EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccC--CCC
Confidence 122 334567799999988877 5321 2578999999999743 35444443 433 56777777665 566
Q ss_pred cceeEEEEcCCC----CceeEEeccCCCcc------c-CcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhh
Q 015225 151 HQFGELIADPNT----KELLHYTEKPETFV------S-DLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQ 218 (411)
Q Consensus 151 ~~~g~v~~d~~~----~~v~~~~e~~~~~~------~-~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (411)
+.||++..| ++ ++|..|.|||.... + .++++|+|+|+++.| +.+.+..+......... .
T Consensus 146 t~yG~I~~~-~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~-------~- 216 (337)
T 2cu2_A 146 TEYGYIRLG-PREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERL-------L- 216 (337)
T ss_dssp SSSCEEEEE-EEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHH-------H-
T ss_pred CCceEEEEC-CcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHH-------h-
Confidence 789999877 44 78999999986321 1 688999999999876 77766543221100000 0
Q ss_pred hcccCCCCceeeeccchhh--------c-cc-CCCceEEEeecceeeecCCccchhhcc
Q 015225 219 SATRTLPVDFVRLDQDILS--------P-LA-GKKQLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 219 ~~~~~~~~~~~~l~~d~l~--------~-l~-~~~~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
.++ .+ .+.++ + ++ +..++++++.+++|.|++++++|+++.
T Consensus 217 ------~~~--~~-~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 217 ------AGA--SL-EEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp ------TTC--CH-HHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred ------cCC--cH-HHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 000 00 11111 1 23 345899999999999999999988774
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=198.36 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=161.1
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|++.||||||| .|+||. ||+|+|++|+|||+|+++.+.++ ++++|+|++. .+.+.++++. ++.++
T Consensus 8 M~~~aIIlA~G--~stRl~------~K~L~~i~GkPli~~~l~~l~~~-~i~~VvVvt~--~~~i~~~~~~----~g~~v 72 (256)
T 3tqd_A 8 MEFRVIIPARF--DSTRLP------GKALVDIAGKPMIQHVYESAIKS-GAEEVVIATD--DKRIRQVAED----FGAVV 72 (256)
T ss_dssp -CCEEEEECCC--C---CT------TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEES--CHHHHHHHHH----TTCEE
T ss_pred CCceEEEEcCC--CCCCCC------CCCeeeECCchHHHHHHHHHHhC-CCCEEEEECC--HHHHHHHHHH----cCCeE
Confidence 46789999999 999994 79999999999999999999997 8999999875 3556777654 56666
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhc-CCeeEEEEEecCc----cccccee
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRY-GGMGTMLVIKVSA----ESAHQFG 154 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~-~~~~~~~~~~~~~----~~~~~~g 154 (411)
.+..++...|+++ +..+.+.+.....+.++++.||.++ ...+..+++.+.+. ++++++++.+... .++...+
T Consensus 73 ~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk 151 (256)
T 3tqd_A 73 CMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK 151 (256)
T ss_dssp EECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE
T ss_pred EEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE
Confidence 6666666677765 7777777732235889999999975 56799999998764 5566666666521 1222333
Q ss_pred EEEEcCCCCceeEEeccCCC-c-------------ccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhc
Q 015225 155 ELIADPNTKELLHYTEKPET-F-------------VSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSA 220 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~~~-~-------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (411)
|..| ++++++.|.++|.. + .+.+...|+|.|++++++.+.+..+...+.
T Consensus 152 -vv~d-~~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~--------------- 214 (256)
T 3tqd_A 152 -VVLN-RRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEK--------------- 214 (256)
T ss_dssp -EEEC-TTSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHH---------------
T ss_pred -EEEC-CCCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccc---------------
Confidence 5678 78999999998641 1 256889999999999999887653221000
Q ss_pred ccCCCCceeeeccchhhcccCCCceEEEeecce-eeecCCccchhhcch
Q 015225 221 TRTLPVDFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMSLKCSS 268 (411)
Q Consensus 221 ~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~-~~~I~t~~d~~~a~~ 268 (411)
... -+.++.|..+.++.++..+++ |.+||||+||.++++
T Consensus 215 -------~e~--leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 215 -------MEA--LEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp -------HHT--CTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred -------hhh--hHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 000 123444556669999998874 899999999988864
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=196.72 Aligned_cols=224 Identities=15% Similarity=0.111 Sum_probs=165.7
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|++.||||||| .|+||. +|+|+|++|+|||+|+++.+.++ ++++|+|++. .+.+.++++. ++.++
T Consensus 17 M~~~aIIlA~G--~stRlp------~K~L~~i~GkPmi~~~l~~l~~~-~i~~IvV~t~--~~~i~~~~~~----~g~~v 81 (264)
T 3k8d_A 17 MSFVVIIPARY--ASTRLP------GKPLVDINGKPMIVHVLERARES-GAERIIVATD--HEDVARAVEA----AGGEV 81 (264)
T ss_dssp -CCEEEEECCS--CCSSST------TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEES--CHHHHHHHHH----TTCEE
T ss_pred CceEEEEEcCC--CCCCCC------CcceeeECCeEHHHHHHHHHHhC-CCCEEEEECC--HHHHHHHHHH----cCCEE
Confidence 45889999999 999992 49999999999999999999997 8999999884 3456666654 46666
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccccee-----
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG----- 154 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----- 154 (411)
.+..+....|++. +..+.+.+.....+.++++.||.++ ...+..+++.+.+.++++++++.+. +++..++
T Consensus 82 ~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v--~d~~~~~~p~~v 158 (264)
T 3k8d_A 82 CMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI--HNAEEAFNPNAV 158 (264)
T ss_dssp EECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC--CSHHHHTCTTSC
T ss_pred EEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc--CCHHHccCCCce
Confidence 6655666677766 7777777632235889999999975 5679999999988788888888887 4433332
Q ss_pred EEEEcCCCCceeEEeccCCC-------------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcc
Q 015225 155 ELIADPNTKELLHYTEKPET-------------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSAT 221 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~~~-------------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (411)
.|..| ++++++.|.++|.. +.+.+.++|+|.|++++++.+....+...+
T Consensus 159 kVv~d-~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE----------------- 220 (264)
T 3k8d_A 159 KVVLD-AEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLE----------------- 220 (264)
T ss_dssp EEEEC-TTSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHH-----------------
T ss_pred EEEEC-CCCeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhh-----------------
Confidence 36678 79999999998631 125688999999999999887653211100
Q ss_pred cCCCCceeeeccchhhcccCCCceEEEee-cceeeecCCccchhhcch
Q 015225 222 RTLPVDFVRLDQDILSPLAGKKQLYTYET-MDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 222 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~-~~~~~~I~t~~d~~~a~~ 268 (411)
.... -+.+..+..+.++.++.. ..+|.+|+||+|+.+++.
T Consensus 221 -----~~e~--leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~ 261 (264)
T 3k8d_A 221 -----HIEM--LEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA 261 (264)
T ss_dssp -----HHHT--CTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHH
T ss_pred -----hHHH--HHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 0000 123444455668999855 447899999999998865
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=183.38 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=161.7
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHH-HHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPI-SACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l-~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
..||||||| .|+||. +|+|++++|+|||+|++ +.+.+. ++++|+|++++ +.+.+++.. ++.++.
T Consensus 2 ~~aiIlA~G--~stR~~------~K~L~~i~GkPli~~~i~~~~~~~-~~~~vvVvt~~--~~i~~~~~~----~g~~v~ 66 (253)
T 4fcu_A 2 KHIVIPARF--SSSRLP------GKPLLLIHDRPMILRVVDQAKKVE-GFDDLCVATDD--ERIAEICRA----EGVDVV 66 (253)
T ss_dssp EEEEEECCS--CCTTST------TGGGSEETTEEHHHHHHHHHHTCT-TCCEEEEEESC--HHHHHHHHT----TTCCEE
T ss_pred eEEEEEeCC--CCCCCC------CCceeeECCeEhHHHHHHHHHHhc-CCCEEEEECCH--HHHHHHHHH----cCCeEE
Confidence 469999999 999996 49999999999999999 999996 89999998863 456666643 566666
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcC-Ce-eEEEEEecC---cccccceeE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYG-GM-GTMLVIKVS---AESAHQFGE 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~-~~-~~~~~~~~~---~~~~~~~g~ 155 (411)
+..+....|+ +++..+.+.+.....+.++++.||.++ ...+..+++.+.+.. .. +|+++.-.. ..++..+ .
T Consensus 67 ~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~-k 144 (253)
T 4fcu_A 67 LTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIV-K 144 (253)
T ss_dssp ECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSC-E
T ss_pred EeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCcc-E
Confidence 5555555565 477888887742235789999999975 567999999998763 33 444443111 1344443 4
Q ss_pred EEEcCCCCceeEEeccCC----C---------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhccc
Q 015225 156 LIADPNTKELLHYTEKPE----T---------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATR 222 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~~----~---------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
|..| ++|+++.|.++|- . +...+.++|+|+|++++|..+.+..+.
T Consensus 145 vv~d-~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~--------------------- 202 (253)
T 4fcu_A 145 VVMS-KQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMG--------------------- 202 (253)
T ss_dssp EEEC-TTSBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCC---------------------
T ss_pred EEEC-CCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCC---------------------
Confidence 6777 7899999998752 1 234578999999999999887643111
Q ss_pred CCCCceeeeccc---hhhcccCCCceEEEeecce-eeecCCccchhhcchHHHhh
Q 015225 223 TLPVDFVRLDQD---ILSPLAGKKQLYTYETMDF-WEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 223 ~~~~~~~~l~~d---~l~~l~~~~~v~~~~~~~~-~~~I~t~~d~~~a~~~~l~~ 273 (411)
. +.+ .+ .+..+..+.+++++..+++ |.+|+||+|+.++++.+.++
T Consensus 203 ----~-le~-~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 203 ----K-LEK-LESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp ----H-HHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred ----c-ccc-hhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 1 101 22 2333345669999999998 99999999999998655443
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=182.72 Aligned_cols=213 Identities=15% Similarity=0.215 Sum_probs=135.8
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|.||||||| .|+||+|+ ||+|+|++|+|||+|+++.+..+ +++|+|++ +..+.+.+++. +.++.+
T Consensus 16 m~~~~~iIlA~G--~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~~~~~~~~~---~~~~~~ 83 (232)
T 2xme_A 16 IKLMKAVILAAG--LGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRYADDIDAFL---KDKGFN 83 (232)
T ss_dssp CCCEEEEEEECC--------CC----CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STTHHHHHHHH---TTSCCC
T ss_pred cccceEEEECCc--CcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CChHHHHHHHH---HhcCCc
Confidence 677999999999 99999885 99999999999999999999984 89999888 55555666643 235556
Q ss_pred eEEeeCCC-CCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 81 VRYLKEDK-PHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 81 i~~v~~~~-~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
+.++.+.. ..|++++++.+++.+. +++++++||.+++.+ +++...+.. . +++.......+...++.+..+
T Consensus 84 ~~~v~~~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~---~~~~l~~~~-~-~~~~~~~~~~~~~~~~~v~~~ 154 (232)
T 2xme_A 84 YKIVRHDRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQ---FIEKAVRGE-G-VIADREPRFVDIGEATKIRVE 154 (232)
T ss_dssp EEEEECSCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHH---HHHHHTTCC-E-EEEESSCSSSCTTTSCEEEEE
T ss_pred EEEEECCCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHH---HHHHHHhCC-C-cEEEccccccCCCcceEEEEc
Confidence 77776544 3689999999988774 679999999987322 233322221 2 222211111223445666666
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
++++..+.+++. .+++.++|+|++++++|+.+.+.... +...+ .++++
T Consensus 155 --~g~v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~-------------------------g~~~l-~~ll~-- 202 (232)
T 2xme_A 155 --DGRVAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDR-------------------------EEIPL-SEIVK-- 202 (232)
T ss_dssp --TTEEEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTS-------------------------SCCCH-HHHHH--
T ss_pred --CCEEEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhc-------------------------ChhHH-HHHHH--
Confidence 689999988764 35677899999999999877654311 11112 33333
Q ss_pred cCCCceEEEeec-ceeeecCCccchhhcch
Q 015225 240 AGKKQLYTYETM-DFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 240 ~~~~~v~~~~~~-~~~~~I~t~~d~~~a~~ 268 (411)
.+++..+..+ ++|.+|+||+||.+++.
T Consensus 203 --~~~v~~~~~~~~~~~dI~tpeDl~~a~~ 230 (232)
T 2xme_A 203 --LARLPVTYVDGELWMDVDTKEDVRRANR 230 (232)
T ss_dssp --HHTCBEEECCSCCEEEEECC--------
T ss_pred --cCCEEEEEECCCCEEeCCCHHHHHHHHh
Confidence 2345555554 68999999999988764
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=180.38 Aligned_cols=227 Identities=14% Similarity=0.138 Sum_probs=157.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.||||||| .|+||. +|+|+|++|+|||+|+++.+..+ ++++|+|++++ +.+.+++.. ++..+.
T Consensus 2 ~~~aiIlA~G--~g~R~~------~K~l~~~~gkpli~~~l~~l~~~-~~~~ivvv~~~--~~i~~~~~~----~~~~~~ 66 (262)
T 1vic_A 2 SFTVIIPARF--ASSRLP------GKPLADIKGKPMIQHVFEKALQS-GASRVIIATDN--ENVADVAKS----FGAEVC 66 (262)
T ss_dssp CCEEEEECCC--CCSSST------TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESC--HHHHHHHHH----TTCEEE
T ss_pred CcEEEEEcCC--CCCCCC------CCccccCCCeEHHHHHHHHHHhC-CCceEEEECCc--HHHHHHHHh----cCCEEE
Confidence 4899999999 999994 49999999999999999999997 88999998874 346666654 344442
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccc-----cceeE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESA-----HQFGE 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~g~ 155 (411)
..++....|++ .+..+.+.+.....+.+++++||.++ ..++..+++.+.+.++++++++.+. .++ ..+..
T Consensus 67 ~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 143 (262)
T 1vic_A 67 MTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI--HDAEELFNPNAVK 143 (262)
T ss_dssp ECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC--CCHHHHTCTTSCE
T ss_pred ECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEec--CCHHHhcCCCceE
Confidence 22223344554 45566666642235789999999974 5678999999888777877777776 332 34455
Q ss_pred EEEcCCCCceeEEeccC-----------------CCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhh
Q 015225 156 LIADPNTKELLHYTEKP-----------------ETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQ 218 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~-----------------~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (411)
+..| ++++++.|.+++ +.+...+.++|+|+|+++.+..+........
T Consensus 144 ~~~~-~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~--------------- 207 (262)
T 1vic_A 144 VLTD-KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQL--------------- 207 (262)
T ss_dssp EEEC-TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHH---------------
T ss_pred EEEC-CCCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCch---------------
Confidence 5556 678998887754 2233467899999999988876543211100
Q ss_pred hcccCCCCceeeeccchhhcccCCCceEEEeec-ceeeecCCccchhhcchHHHh
Q 015225 219 SATRTLPVDFVRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 219 ~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~ 272 (411)
+...+... +..+..+.++.++..+ ++|.+|+||+||..++..+..
T Consensus 208 --------~~~e~~~~-~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~ 253 (262)
T 1vic_A 208 --------ENLEKLEQ-LRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 253 (262)
T ss_dssp --------HHHHTCTT-HHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred --------hhhhhHHH-HHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 00001012 2222245689999988 799999999999999876644
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=178.22 Aligned_cols=220 Identities=17% Similarity=0.181 Sum_probs=151.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.||||||| .|+||+ ||+|+|++|+|||+|+++.+.++ +++|+|++++ +.+.++++. + .++.
T Consensus 2 ~~~aiIlA~G--~g~R~~------~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~--~~i~~~~~~----~-~~~~ 64 (234)
T 2y6p_A 2 RRAVIIPARL--GSTRLK------EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDS--ERVKEVVED----L-CEVF 64 (234)
T ss_dssp CEEEEEECCS--CCTTTT------TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESC--HHHHHHHTT----T-SEEE
T ss_pred ceEEEEEcCC--CCCCCC------CCcceeECCEEHHHHHHHHHHHh--CCEEEEECCh--HHHHHHHHh----c-eEEE
Confidence 4899999999 999996 79999999999999999999984 8999988875 456676654 2 3444
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc-cC-CChHHHHHHHHhcCCeeEEEEEecC-cccccceeEEEEc
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC-CS-FPLPDLLEAHKRYGGMGTMLVIKVS-AESAHQFGELIAD 159 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i-~~-~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~g~v~~d 159 (411)
+..+....|+++++ .+++.+. .+.+++++||.+ .+ .++..+++.|.+.+..++++..... ..++..++ +..|
T Consensus 65 ~~~~~~~~g~~~~~-~~~~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 139 (234)
T 2y6p_A 65 LTPSDLPSGSDRVL-YVVRDLD---VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLD 139 (234)
T ss_dssp ECCTTCCSHHHHHH-HHHTTCC---CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEEC
T ss_pred ECCcccccchHHHH-HHHHhCC---CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEc
Confidence 44344456677655 4555443 578999999995 44 6799999999877644454444210 01233333 4456
Q ss_pred CCCCceeEEeccCCC-cc-----cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 160 PNTKELLHYTEKPET-FV-----SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~-~~-----~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
+++++..+.++|.. .. ..+.++|+|+|+++.+..+.+....... . .+. + .
T Consensus 140 -~~g~v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~---~-----------------~d~--~-~ 195 (234)
T 2y6p_A 140 -REGYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLE---Q-----------------IEG--L-E 195 (234)
T ss_dssp -TTSBEEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHH---H-----------------HHT--C-T
T ss_pred -CCCCEeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccc---h-----------------hhH--H-H
Confidence 67899999998632 11 3567999999999987665532110000 0 000 1 1
Q ss_pred chhhcccCCCceEEEeecceeeecCCccchhhcchH
Q 015225 234 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 234 d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
.+..+.++.++.++..+++|.+|+||+||..++..
T Consensus 196 -~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~ 230 (234)
T 2y6p_A 196 -QLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEK 230 (234)
T ss_dssp -HHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHH
T ss_pred -HHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHH
Confidence 12333456689999999999999999999988654
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=177.41 Aligned_cols=224 Identities=19% Similarity=0.221 Sum_probs=154.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCC-cEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNL-AQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++.||||||| .|+|| | ||+|+|++|+|||+|+++.+.++ ++ ++|+|++++ +.+.+++.. ++.++
T Consensus 2 ~~~aiIlA~G--~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~-~~~~~ivvv~~~--~~i~~~~~~----~~~~~ 66 (245)
T 1h7e_A 2 KAVIVIPARY--GSSRL-P-----GKPLLDIVGKPMIQHVYERALQV-AGVAEVWVATDD--PRVEQAVQA----FGGKA 66 (245)
T ss_dssp CEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHTC-TTCCEEEEEESC--HHHHHHHHH----TTCEE
T ss_pred CeEEEEEcCC--cCCCC-C-----CCcccccCCchHHHHHHHHHHhC-CCCCeEEEECCc--HHHHHHHHH----cCCeE
Confidence 4899999999 99999 5 89999999999999999999997 75 999999875 456666654 34444
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhc-CCeeEEEEEecCccc--ccceeEE
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRY-GGMGTMLVIKVSAES--AHQFGEL 156 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~g~v 156 (411)
....++...|+++ +..+.+.+. .+.+++++||.++ ...+..+++.+.+. ++++++++.+..... ...+-.+
T Consensus 67 ~~~~~~~~~g~~~-~~~~~~~~~---~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (245)
T 1h7e_A 67 IMTRNDHESGTDR-LVEVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKV 142 (245)
T ss_dssp EECCSCCSSHHHH-HHHHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEE
T ss_pred EeCCCccCCcHHH-HHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEE
Confidence 3322344556654 445555553 5789999999975 55689999998877 677776666541010 1112223
Q ss_pred EEcCCCCceeEEeccCCC-c-----ccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceee
Q 015225 157 IADPNTKELLHYTEKPET-F-----VSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVR 230 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~~-~-----~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (411)
..+ +++++..+.+++.. . .+.+.++|+|+|+++.+..+.+. . .+.+.
T Consensus 143 ~~~-~~g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~-~-------------------------~~~~~ 195 (245)
T 1h7e_A 143 VVN-TRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQL-P-------------------------ESMPE 195 (245)
T ss_dssp EEC-TTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGS-C-------------------------CCHHH
T ss_pred EEC-CCCcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhC-C-------------------------CCccc
Confidence 335 57899988876321 1 12567999999999877544321 1 01111
Q ss_pred eccchhhcc---cCCCceEEEeecceeeecCCccchhhcchHHHhh
Q 015225 231 LDQDILSPL---AGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 231 l~~d~l~~l---~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
+ +|.++.+ ..+.++.++..++.|.+|+||+||..++..+.++
T Consensus 196 ~-td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~ 240 (245)
T 1h7e_A 196 Q-AESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 240 (245)
T ss_dssp H-HHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred c-chhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Confidence 2 4444433 2356899999889999999999999998766544
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-20 Score=165.58 Aligned_cols=227 Identities=15% Similarity=0.104 Sum_probs=148.4
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchH-HHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEER-EFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~-~i~~~~~~~~~~~~~ 79 (411)
|+++.||||||| .|+||++ ..+||+|+|++|+|||+|+++.+..++.+++|+|+++.... .+++.+..+. ++.
T Consensus 1 M~~~~aIIlAaG--~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~--~~~ 74 (246)
T 3f1c_A 1 MSLIYAQILAGG--KGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYI--SDD 74 (246)
T ss_dssp -CCEEEEEECC-------C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHC--CCT
T ss_pred CCccEEEEECCc--cccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhC--CCC
Confidence 888999999999 9999986 46799999999999999999999997339999998886543 3445554421 223
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhcc----CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccce
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEE----NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQF 153 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~----~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (411)
.+.++. ...+..++++.+++.+... ..+.++++.||.++ ...+..+++.+.+.++. +.+.+. .+
T Consensus 75 ~~~~~~--~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~~~~~--~d---- 144 (246)
T 3f1c_A 75 RIVVIE--GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DTVIEA--LD---- 144 (246)
T ss_dssp TEEEEE--CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EEEEEC--SS----
T ss_pred CEEEEC--CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EEEEec--cc----
Confidence 455554 2346788999999988631 25789999999975 55699999999876543 344444 33
Q ss_pred eEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeec
Q 015225 154 GELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLD 232 (411)
Q Consensus 154 g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (411)
..+..+ +++.+..+.+++.. +..-.-++|+.+.+ +.+.+.... +.+.+
T Consensus 145 ~i~~~~-~~~~v~~~~~r~~l----~~~qtpq~f~~~~L~~a~~~~~~~-------------------------~~~~~- 193 (246)
T 3f1c_A 145 TIVESS-NHEVITDIPVRDHM----YQGQTPQSFNMKKVFNHYQNLTPE-------------------------KKQIL- 193 (246)
T ss_dssp CEEECS-SSSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTSCHH-------------------------HHHHC-
T ss_pred eEEEec-CCCeEEEecChHHh----hhhcCCceeEHHHHHHHHHHHHHc-------------------------CCCcc-
Confidence 233444 45566665555321 11124568887654 444332110 01112
Q ss_pred cchhhcccC-CCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 233 QDILSPLAG-KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 233 ~d~l~~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
+|.+..+.. +.++..+..+..|.+|++|+|+..++..+.++.
T Consensus 194 TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 194 TDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp CCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 566665544 448999998889999999999999987665444
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=165.99 Aligned_cols=219 Identities=14% Similarity=0.070 Sum_probs=136.0
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~ 82 (411)
|.||||||| .|+||++ ..+||+|+|++|+|||+|+++.+.+++++++|+|++++.. +.+++++....-.......
T Consensus 3 ~~~iIlA~G--~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (236)
T 2vsh_A 3 IYAGILAGG--TGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERII 78 (236)
T ss_dssp EEEEEEEC---------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEE
T ss_pred eEEEEeCCc--cccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceE
Confidence 789999999 9999987 6789999999999999999999998635999999988765 5566666542100111223
Q ss_pred EeeCCCCCCChHHHHHHHHHhhc--c--CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIME--E--NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGEL 156 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~--~--~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v 156 (411)
+.. ...|..++++.+++.+.. . ..+.+++++||.++ ..++..+++.|.+.++ .+++.+. .++.
T Consensus 79 ~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~--~~~~----- 147 (236)
T 2vsh_A 79 ITK--GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEA--VDTI----- 147 (236)
T ss_dssp EEE--CCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEEC--CSCE-----
T ss_pred EEC--CCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEec--cccE-----
Confidence 322 235778899999887742 1 23678899999964 5579999999877654 2444454 3322
Q ss_pred EEcCCCC-ceeEEeccCCCcccCccc-ceEEEeCHHHHHH-hhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 157 IADPNTK-ELLHYTEKPETFVSDLIN-CGVYVFTPDFFTA-IQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 157 ~~d~~~~-~v~~~~e~~~~~~~~~~~-~Giyi~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
..+ +++ ++..+.+++. +.. ...|+|+++.+.. +...... +.+.+ .
T Consensus 148 ~~~-~~g~~~~~~~~~~~-----~~~~~~p~~f~~~~l~~~~~~~~~~-------------------------g~~~~-~ 195 (236)
T 2vsh_A 148 VES-TNGQFITDIPNRAH-----LYQGQTPQTFRCKDFMDLYGSLSDE-------------------------EKEIL-T 195 (236)
T ss_dssp EEC-SSSSBCCBCCCGGG-----EEEEEEEEEEEHHHHHHHHHTCCHH-------------------------HHHHC-C
T ss_pred EEe-CCCCeeeeecChHH-----heeecCCcEecHHHHHHHHHHHHhc-------------------------CCCcC-C
Confidence 223 466 7777766532 122 2478899876653 3321110 11112 3
Q ss_pred chhhcccC-CCceEEEeecceeeecCCccchhhcchH
Q 015225 234 DILSPLAG-KKQLYTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 234 d~l~~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
+.++.+.. ..++..+..+++|.+|+||+||..++..
T Consensus 196 ~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~ 232 (236)
T 2vsh_A 196 DACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSM 232 (236)
T ss_dssp SHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHH
Confidence 33333333 3478888877899999999999888653
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=164.15 Aligned_cols=205 Identities=15% Similarity=0.063 Sum_probs=140.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++.||||||| .|+||+ ||+|+|++|+|||+|+++.+.++ + +++|+|++++ +.+.+++.. ++.++
T Consensus 4 ~~~aiIlA~G--~g~R~~------~K~l~~i~gkpll~~~l~~~~~~-~~~~~ivvv~~~--~~i~~~~~~----~~~~~ 68 (228)
T 1ezi_A 4 QNIAVILARQ--NSKGLP------LKNLRKMNGISLLGHTINAAISS-KCFDRIIVSTDG--GLIAEEAKN----FGVEV 68 (228)
T ss_dssp EEEEEEECCS--SCSSST------TTTTCEETTEEHHHHHHHHHHHH-CCCSEEEEEESC--HHHHHHHHH----TTCEE
T ss_pred ceEEEEecCC--CCCCCC------CcccceeCCcCHHHHHHHHHHhC-CCCCEEEEECCC--HHHHHHHHH----cCCEE
Confidence 4669999999 999997 79999999999999999999986 6 7999998863 345555543 34444
Q ss_pred EEeeCC----CCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeE
Q 015225 82 RYLKED----KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGE 155 (411)
Q Consensus 82 ~~v~~~----~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 155 (411)
+..+. ...|+.++++.+++.+. ...+.+++++||.++ ...+..+++.+.+.++++++.+.+. .+. .++.
T Consensus 69 -~~~~~~~~~~~~g~~~sv~~~l~~~~-~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~-p~~~ 143 (228)
T 1ezi_A 69 -VLRPAELASDTASSISGVIHALETIG-SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM--EHH-PLKT 143 (228)
T ss_dssp -EECCC------CHHHHHHHHHHHHHT-CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC--SSC-TTSC
T ss_pred -EeCchHHcCCCCChHHHHHHHHHHhC-CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEec--CCC-ccee
Confidence 22222 34567889999998883 124789999999975 4568899888876677777777776 331 1233
Q ss_pred EEEcCCCCceeEEec-c---CC--C-cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCce
Q 015225 156 LIADPNTKELLHYTE-K---PE--T-FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDF 228 (411)
Q Consensus 156 v~~d~~~~~v~~~~e-~---~~--~-~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (411)
...| +++++..+.+ + +. . ......++|+|++++..+....+
T Consensus 144 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~------------------------------- 191 (228)
T 1ezi_A 144 LLQI-NNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC------------------------------- 191 (228)
T ss_dssp EEEC-C--CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHTS-------------------------------
T ss_pred eEEc-CCCcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCCc-------------------------------
Confidence 3346 6788888865 2 11 1 11234578999999876533110
Q ss_pred eeeccchhhcccCCCceEEEeec-ceeeecCCccchhhcchHH
Q 015225 229 VRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 229 ~~l~~d~l~~l~~~~~v~~~~~~-~~~~~I~t~~d~~~a~~~~ 270 (411)
+ ...++..+... ..|.+|+||+||..+...+
T Consensus 192 ------~-----~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l 223 (228)
T 1ezi_A 192 ------F-----FIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (228)
T ss_dssp ------S-----CCSSCEEEECCTGGGCCCCSHHHHHHHHHHH
T ss_pred ------c-----cCCceEEEEeCcccccCCCCHHHHHHHHHHH
Confidence 0 03355666655 5899999999998886543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=173.11 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=47.2
Q ss_pred CeEEEEcCCcccCC--ChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC-CCceeEEeccCCCccc-CcccceE
Q 015225 109 SHIILLNCDVCCSF--PLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN-TKELLHYTEKPETFVS-DLINCGV 184 (411)
Q Consensus 109 ~~~lv~~~D~i~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~~v~~~~e~~~~~~~-~~~~~Gi 184 (411)
..=|+-.+|+++.. +|.+++++|. +++.. . ++...+|....|.. .++| .|.|||..... .+.++|+
T Consensus 11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~--~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGi 80 (374)
T 2iu8_A 11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--N--GATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGA 80 (374)
T ss_dssp ----------CCSCCEEHHHHHHHTT-----CEEES--C--TTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSE
T ss_pred ccCcccCccccccCcCcHHHHHHhhC-----CEEEC--C--CcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEE
Confidence 34477789999976 8999999885 35543 2 56677888777632 3456 99999875332 5678999
Q ss_pred EEeCHHHHH
Q 015225 185 YVFTPDFFT 193 (411)
Q Consensus 185 yi~~~~~~~ 193 (411)
|+|++++++
T Consensus 81 yI~~~~~l~ 89 (374)
T 2iu8_A 81 IIISRTQFQ 89 (374)
T ss_dssp EEEEHHHHH
T ss_pred EEeChhHhh
Confidence 999998764
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-20 Score=166.84 Aligned_cols=221 Identities=11% Similarity=0.111 Sum_probs=141.6
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+|.+|||||| . +||.+.+...||+|+|++|+|||+|+++.+..+ +. +|+|+++. +.+.++ . .+.
T Consensus 2 ~~~~vIlAaG--~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~-~~-~ivvv~~~--~~i~~~-------~--~~~ 65 (232)
T 2dpw_A 2 RPSAIVLAGG--K-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAA-GL-SPVYVGEN--PGLVPA-------P--ALT 65 (232)
T ss_dssp CCEEEEECCC--B-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHT-TC-EEEEESCC--SSCSSC-------C--SEE
T ss_pred ceeEEEECCC--C-CccccccCCCCceeeEECCEEHHHHHHHHHHhc-CC-EEEEEeCh--HHHhhh-------c--CeE
Confidence 4899999999 9 777665556899999999999999999999997 77 88887654 222221 1 234
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEc
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIAD 159 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d 159 (411)
+ ....|++++++.+++.+. +++++++||.++ ...+..+++ | +.++++++...+. ++. ..|+.+
T Consensus 66 ~---~~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~--~~~~~~~~~~--- 131 (232)
T 2dpw_A 66 L---PDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPK--EAVEARFPRT--- 131 (232)
T ss_dssp E---CCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEH--HHHHHHCTTC---
T ss_pred e---cCCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeec--cchhhhCCCc---
Confidence 4 456799999999988773 789999999964 556888888 6 5566777666653 222 234322
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhh--hcccCCCCceeeeccchhh
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQ--SATRTLPVDFVRLDQDILS 237 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~d~l~ 237 (411)
..++..+.|+| ..++|+|+|+++.+..+.+........ ...+..+...+. +-.+... +.+.+ +++++
T Consensus 132 --~~~v~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~-~~~P~~~~~~~~~~~l~~~~~-ge~~l-~~~~~ 200 (232)
T 2dpw_A 132 --KRTYARLREGT------FTGGNLLLLDKSLFRKALPLARRVVAL-RKRPLALARLVGWDVLLKLLL-GRLSL-AEVEA 200 (232)
T ss_dssp --CCCCEEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHT-TTCHHHHHHHHCHHHHHHHHH-TCCCH-HHHHH
T ss_pred --ceeEEEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHh-ccCHHHHHHHHCHHHHHHHHh-ccCCH-HHHHH
Confidence 23567777764 378999999999876665433221000 000000000000 0000000 12223 56665
Q ss_pred cccC--CCceEEEee--cceeeecCCccchh
Q 015225 238 PLAG--KKQLYTYET--MDFWEQIKTPGMSL 264 (411)
Q Consensus 238 ~l~~--~~~v~~~~~--~~~~~~I~t~~d~~ 264 (411)
.+.. +.++..+.. .+.|.+|+||+||.
T Consensus 201 ~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 201 RAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 5542 357777776 45799999999974
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-19 Score=156.62 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=144.3
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCC-CcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN-LAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~g-i~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
+|.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+..+ + +++|+|++++.. +.+.+++. +..
T Consensus 2 ~~~~vIlA~G--~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~-~~~~~i~vv~~~~~~~~~~~~~~------~~~ 69 (223)
T 2xwl_A 2 ATVAVVPAAG--SGERLRA---GRPKAFVTLGGTPLLEHALSGLRAS-GVIDRIVIAVPPALTDESKLVFG------GED 69 (223)
T ss_dssp CEEEEEECCC--CCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHH-SCCSEEEEEECGGGHHHHHHHTC------BTT
T ss_pred ceEEEEECCc--cCcccCC---CCCCeeeEECCeEHHHHHHHHHhcC-CCCCeEEEEEcccHHHHHHHHhc------cCC
Confidence 4899999999 9999983 6799999999999999999999986 6 899999988664 33444432 224
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++... .+.+++++.+++.+. ..+.+++++||.++ ..++..+++.+. .+.++++.+.+. .++..+ .
T Consensus 70 v~~~~~~--~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~--~d~~~~----~ 138 (223)
T 2xwl_A 70 SVIVSGG--VDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAP--ADTIKA----V 138 (223)
T ss_dssp EEEEECC--SSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECC--SSCEEE----E
T ss_pred eEEEcCC--CCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEec--ccceEE----E
Confidence 5555532 456888998888772 25678899999974 446899998883 234556666655 343222 2
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
| +++++..+.+++.. ......|+|+++.+..+.+... + +.+ .+....
T Consensus 139 ~-~~g~~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~~--------------------------~-~~~-~~~~~~ 185 (223)
T 2xwl_A 139 D-ANGAVLGTPERAGL----RAVQTPQGFHADVLRRAYARAT--------------------------A-GGV-TDDASL 185 (223)
T ss_dssp C-TTSBEEECCCGGGE----EEECSCEEEEHHHHHHHHTTCC--------------------------S-CCC-CCHHHH
T ss_pred c-CCCcEEeecChHHh----eeeeCCcccCHHHHHHHHHHhh--------------------------C-CCC-ccHHHH
Confidence 6 57888888776421 1112457888876654432110 0 001 233333
Q ss_pred ccC-CCceEEEeecceeeecCCccchhhcchHH
Q 015225 239 LAG-KKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 239 l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
+.. +.++..+..++.|.+|+||+||..+...+
T Consensus 186 ~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l 218 (223)
T 2xwl_A 186 VEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVL 218 (223)
T ss_dssp HHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECCcccccccCHHHHHHHHHHH
Confidence 332 34788888788999999999999886544
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-19 Score=158.65 Aligned_cols=219 Identities=15% Similarity=0.208 Sum_probs=137.7
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.||||||| .|+||+. ..||+|+|++|+|||+|+++.+.+++++++|+|++++..+.+.+++.. .++.+
T Consensus 2 ~~~~~aiIlAaG--~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~---~~~~~ 73 (228)
T 2yc3_A 2 EKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE---SIDVD 73 (228)
T ss_dssp TTCEEEEEECCC--CC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT---TSSSE
T ss_pred CcceEEEEECCc--cccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH---hCCCc
Confidence 357999999999 9999973 579999999999999999999998647999999998766555444432 34445
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.. ..|..++++.+++.+.. ..+.++++.||.++ ...+..+++.|.+.++ ++++.+. .+. ....
T Consensus 74 v~~~~~--~~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~--~~~----~~~~ 142 (228)
T 2yc3_A 74 LSFAIP--GKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPA--KAT----IKEV 142 (228)
T ss_dssp EEEECC--CSSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEEC--CSC----CCCB
T ss_pred EEEECC--CCCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEec--cce----EEEE
Confidence 666542 35788999999887742 23678889999864 4568999998876553 4444444 221 1112
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhh
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILS 237 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 237 (411)
| +++.+..+.+++. ..... ..|+|+++.+ +.+.+.... + +.+ ++.++
T Consensus 143 ~-~~~~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~~~-------------------------~-~~~-~~~~~ 190 (228)
T 2yc3_A 143 N-SDSLVVKTLDRKT---LWEMQ-TPQVIKPELLKKGFELVKSE-------------------------G-LEV-TDDVS 190 (228)
T ss_dssp C-TTSCBCCCCSCCC---CEEEE-EEEEECHHHHHHHHHHHHHH-------------------------T-CCC-CSTTH
T ss_pred c-CCCceEEecCccc---eEEEe-CCcEEEHHHHHHHHHHHHhc-------------------------C-CCc-ccHHH
Confidence 4 3445544333211 11222 4899998644 444332110 0 111 44444
Q ss_pred cccC-CCceEEEeecceeeecCCccchhhcchHH
Q 015225 238 PLAG-KKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 238 ~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
.+.+ +.++..+.....|.+|+||+||..++..+
T Consensus 191 ~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l 224 (228)
T 2yc3_A 191 IVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (228)
T ss_dssp HHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred HHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence 4433 34676665556799999999998886543
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=153.46 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=129.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+|.||||||| .|+||++ ..||+|+|++|+|||+|+++.+..++++++|+|+++++.+.+.+ +.... ...+.
T Consensus 6 ~~~aiIlA~G--~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~---~~~i~ 76 (231)
T 1vgw_A 6 KNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF---PQVRV 76 (231)
T ss_dssp CEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC---TTSEE
T ss_pred ceEEEEEccc--ccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC---CCceE
Confidence 5889999999 9999987 68999999999999999999999863499999998865555555 44321 12355
Q ss_pred EeeCCCCCCChHHHHHHHHHhhcc----CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEE----NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGEL 156 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~----~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v 156 (411)
++ ....|++++++.+++.+... ..+.+++++||.++ ...+..+++.+.+.+.. .+++.+. .+...
T Consensus 77 ~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~---- 147 (231)
T 1vgw_A 77 WK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GILAVPV--ADTLK---- 147 (231)
T ss_dssp EC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEEEEEC--CSCEE----
T ss_pred EE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEEEeec--ccceE----
Confidence 54 34568899999998877421 25789999999975 45588999888655423 3444444 22211
Q ss_pred EEcCCCCceeEEeccCCCcccCc-ccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccch
Q 015225 157 IADPNTKELLHYTEKPETFVSDL-INCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDI 235 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~~~~~~~-~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 235 (411)
..+ ++++....++ ..+ ...+.|+|+++.+..+.+.... .+.... ..+
T Consensus 148 ~~~--~g~i~~~~~~-----~~~~~~~~p~~f~~~~l~~~~~~~~~------------------------~g~~~~-~~~ 195 (231)
T 1vgw_A 148 RAE--SGQISATVDR-----SGLWQAQTPQLFQAGLLHRALAAENL------------------------GGITDE-ASA 195 (231)
T ss_dssp EES--SSBEEEEECC-----TTEEEEEEEEEEEHHHHHHHHHC----------------------------CCCSH-HHH
T ss_pred EeC--CCceEecCCh-----HHheeeeCCcEecHHHHHHHHHHHhh------------------------cCCCcH-HHH
Confidence 123 4555543322 111 1224889998766543322100 010000 122
Q ss_pred hhcccCCCceEEEeecceeeecCCccchhhcch
Q 015225 236 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 236 l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
+..+ ..++..+...+.|.+|+||+||..+..
T Consensus 196 ~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~ 226 (231)
T 1vgw_A 196 VEKL--GVRPLLIQGDARNLKLTQPQDAYIVRL 226 (231)
T ss_dssp HHTT--TCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred HHHc--CCCEEEEECCccccCcCCHHHHHHHHH
Confidence 2221 346777777778999999999988754
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=160.37 Aligned_cols=184 Identities=15% Similarity=0.218 Sum_probs=136.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccCC---C--CcEEEEecccchHHHHHHHhhhccc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRIP---N--LAQIFLIGFYEEREFALYVSSISNE 76 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~~---g--i~~I~Iv~~~~~~~i~~~~~~~~~~ 76 (411)
++.+|||||| .||||+. ..||+|+||. |+||++|+++.+..+. | +.-+++++.+..+.++++++++ ..
T Consensus 92 k~avViLAGG--~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~~ 165 (488)
T 2i5k_A 92 KLAVLKLNGG--LGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-SA 165 (488)
T ss_dssp GEEEEEECCC--BSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-CS
T ss_pred CceEEEEcCC--CcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-cc
Confidence 5788999999 9999986 8899999999 9999999999987751 2 3334445547778899999874 45
Q ss_pred CCcceEEeeCC------------------------CCCCChHHHHHH-----HHHhhccCCCeEEEEcCCcccC-CChHH
Q 015225 77 LKVPVRYLKED------------------------KPHGSAGGLYYF-----RDMIMEENPSHIILLNCDVCCS-FPLPD 126 (411)
Q Consensus 77 ~~~~i~~v~~~------------------------~~~g~~~~l~~~-----~~~i~~~~~~~~lv~~~D~i~~-~~l~~ 126 (411)
++.++.++.|. .+.|+++++... ++.+.....++++|+++|.+.. .++.
T Consensus 166 fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~- 244 (488)
T 2i5k_A 166 NRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK- 244 (488)
T ss_dssp SSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-
T ss_pred cCceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-
Confidence 67778877665 677999998733 4555323368999999999764 5776
Q ss_pred HHHHHHhcCCeeEEEEEecCcccccc-eeEEEEcCCCCc--eeEEeccCCC--------cccCcccceEEEeCHHHHHHh
Q 015225 127 LLEAHKRYGGMGTMLVIKVSAESAHQ-FGELIADPNTKE--LLHYTEKPET--------FVSDLINCGVYVFTPDFFTAI 195 (411)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~~d~~~~~--v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~l 195 (411)
++.+|.+.++++++.+.+. .++.. ||.+..+ +++ ++++.+.+.. ......|+|+|+|+.+.++.+
T Consensus 245 ~L~~~~~~~a~~t~~v~~~--~~p~~~yG~Iv~~--dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~ 320 (488)
T 2i5k_A 245 ILNHMIETGAEYIMELTDK--TRADVKGGTLISY--DGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRL 320 (488)
T ss_dssp HHHHHHHSCCSEEEEEEEC--CGGGSSSCEEEEE--TTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEEEe--cCCCCceeEEEEE--CCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHH
Confidence 5688888999999888876 56654 9988765 454 4444444432 124577999999999877654
Q ss_pred hh
Q 015225 196 QG 197 (411)
Q Consensus 196 ~~ 197 (411)
.+
T Consensus 321 l~ 322 (488)
T 2i5k_A 321 IE 322 (488)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-18 Score=150.54 Aligned_cols=205 Identities=13% Similarity=0.083 Sum_probs=133.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++.||||||| .|+||. +|+|+|++|+|||+|+++.+.++ + +++|+|++. .+.+.+++.. ++.++
T Consensus 3 ~~~aiIlA~G--~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~-~~~~~ivv~~~--~~~i~~~~~~----~g~~~ 67 (229)
T 1qwj_A 3 HLAALVLARG--GSKGIP------LKNIKRLAGVPLIGWVLRAALDA-GVFQSVWVSTD--HDEIENVAKQ----FGAQV 67 (229)
T ss_dssp CEEEEEECCS--CCSSSS------CTTTSEETTEEHHHHHHHHHHHH-TCCSEEEEEES--CHHHHHHHHH----TTCEE
T ss_pred cEEEEEEcCC--CCCCCC------CcccceECCEEHHHHHHHHHHhC-CCcCEEEEECC--hHHHHHHHHH----cCCEE
Confidence 5889999999 999994 49999999999999999999996 6 699998884 3456666643 34444
Q ss_pred EEeeC---CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEE
Q 015225 82 RYLKE---DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGEL 156 (411)
Q Consensus 82 ~~v~~---~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v 156 (411)
..... ....+..+++..+++.+. ..+.+++++||.++ ..++..+++.+.+.++++++.+.+. .++..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~v- 142 (229)
T 1qwj_A 68 HRRSSETSKDSSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR--HQFRWSEI- 142 (229)
T ss_dssp EECCGGGSSTTCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE--CCCEECCC-
T ss_pred EeChhhhcCCCCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeec--cChhHhhc-
Confidence 22111 112233477888877762 25789999999985 4579999999987777655555433 34433332
Q ss_pred EEcCCCCceeE--Eecc------CCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCce
Q 015225 157 IADPNTKELLH--YTEK------PETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDF 228 (411)
Q Consensus 157 ~~d~~~~~v~~--~~e~------~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (411)
.| ....+.. +.+. .+.+.....++|+|+++++.| +..
T Consensus 143 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~~~------------------------------- 187 (229)
T 1qwj_A 143 -QK-GVREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--EMG------------------------------- 187 (229)
T ss_dssp -CS-STTCCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--HTT-------------------------------
T ss_pred -cc-cccccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--ccc-------------------------------
Confidence 22 1001111 1111 112234467999999999887 110
Q ss_pred eeeccchhhcccCCCceEEEeec-ceeeecCCccchhhcchHHHh
Q 015225 229 VRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 229 ~~l~~d~l~~l~~~~~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~ 272 (411)
+.....+..+... ++|.+|+||+||..++..+.+
T Consensus 188 ----------~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 188 ----------YLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ----------CSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ----------cccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 0112233331433 689999999999999776544
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=143.63 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=93.4
Q ss_pred CCc--eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCC
Q 015225 1 MEK--VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELK 78 (411)
Q Consensus 1 m~~--~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~ 78 (411)
|++ +.+|||||| .|+||+ .||+|+|++|+|||+|+++.+..+ ++++|+|++++..+.+.+++.. ++
T Consensus 1 m~~~~~~~iIlA~G--~~~R~g-----~~K~l~~~~g~pli~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~ 68 (199)
T 2waw_A 1 MLRSRVTGVVLAAG--YSRRLG-----TPKQLLPLGDTTLLGATLAMARRC-PFDQLIVTLGGAADEVLEKVEL----DG 68 (199)
T ss_dssp -CCCCEEEEEEESS--CCTTTT-----SCGGGCEETTEEHHHHHHHHHHTS-SCSEEEEEECTTHHHHHHHSCC----TT
T ss_pred CCCCceEEEEECCC--CCCCCC-----CCEEeCEeCccCHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHhcc----CC
Confidence 544 789999999 999995 499999999999999999999997 7999999988766666666543 34
Q ss_pred cceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCee
Q 015225 79 VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMG 138 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~ 138 (411)
.++.. .+....|++++++.+++.+. ...+.+++++||.++ ...+..+++. +.++++
T Consensus 69 ~~~~~-~~~~~~g~~~~i~~al~~~~-~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~ 126 (199)
T 2waw_A 69 LDIVL-VDDAGLGCSSSLKSALTWVD-PTAEGIVLMLGDQPGITASAVASLIAG--GRGATI 126 (199)
T ss_dssp SEEEE-CCCCCTTCCCHHHHHHHTSC-TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSE
T ss_pred CEEEE-CCCcccCHHHHHHHHHHhhh-ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCE
Confidence 43332 23445689999999998873 125789999999986 5568888876 344443
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=146.47 Aligned_cols=217 Identities=15% Similarity=0.169 Sum_probs=135.0
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc-
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV- 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~- 79 (411)
|++|.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+..++.+++|+|++++..+.+.+ +.. ++.
T Consensus 5 ~~~~~~iIlA~G--~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~----~~~~ 74 (236)
T 1i52_A 5 HLDVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL----ANHP 74 (236)
T ss_dssp CCCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG----GGCT
T ss_pred CCceeEEEECCc--CccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh----cCCC
Confidence 567999999999 9999973 57999999999999999999999863389999998765433433 322 222
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
.+.++.. ..|..++++.+++.+. ..+.+++++||.++ ...+..+++.+.+.++.+ +++.+. .+.. ..
T Consensus 75 ~v~~~~~--~~g~~~~i~~al~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~--~~~~----~~ 143 (236)
T 1i52_A 75 QITVVDG--GDERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPV--RDTM----KR 143 (236)
T ss_dssp TEEEEEC--CSSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEEC--CSCE----EE
T ss_pred CEEEECC--CCCHHHHHHHHHHhcC--CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEec--cccE----EE
Confidence 4555543 2578899999888773 24789999999975 345788888776554232 333343 2221 11
Q ss_pred EcCCC-CceeEEeccCCCcccCcccc-eEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 158 ADPNT-KELLHYTEKPETFVSDLINC-GVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 158 ~d~~~-~~v~~~~e~~~~~~~~~~~~-Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
.+ ++ +++....+. ...... +.++|+.+.+. .+...... +.. + ++
T Consensus 144 ~~-~~~~~i~~~~~~-----~~i~~~~~p~~f~~~~l~~~~~~~~~~-------------------------g~~-~-td 190 (236)
T 1i52_A 144 AE-PGKNAIAHTVDR-----NGLWHALTPQFFPRELLHDCLTRALNE-------------------------GAT-I-TD 190 (236)
T ss_dssp EC-TTSSSEEEEECC-----TTCEEEEEEEEEEHHHHHHHHHHHHHT-------------------------TCC-C-CS
T ss_pred Ec-CCCCceeeccCh-----HhheeeeCCceecHHHHHHHHHHHHhc-------------------------CCC-c-cc
Confidence 24 23 455443211 111111 45577775543 33221110 100 1 11
Q ss_pred hhhccc-CCCceEEEeecceeeecCCccchhhcchHHH
Q 015225 235 ILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 235 ~l~~l~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
....+. ...++..+..++.|.+|+||+||..+...+.
T Consensus 191 ~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~ 228 (236)
T 1i52_A 191 EASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLT 228 (236)
T ss_dssp HHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHH
Confidence 111111 1346777777778999999999998876553
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=140.78 Aligned_cols=209 Identities=13% Similarity=0.181 Sum_probs=129.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCC-CcEEEEecccchHH-HHHHHhhhcccCCcc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN-LAQIFLIGFYEERE-FALYVSSISNELKVP 80 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~-i~~~~~~~~~~~~~~ 80 (411)
.|.||||||| .|+||+. ..||+|+|++|+|||+|+++.+.++ + +++|+|++++.... +++++. ++..
T Consensus 13 ~~~aiILAaG--~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~-~~~~~ivVv~~~~~~~~~~~~~~-----~~~~ 81 (234)
T 1vpa_A 13 MNVAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKS-EAIDGVVIVTRREWFEVVEKRVF-----HEKV 81 (234)
T ss_dssp CEEEEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHC-TTCSEEEEEECGGGHHHHHTTCC-----CTTE
T ss_pred cCeEEEEcCc--chhhcCC---CCCceEEEECCeEHHHHHHHHHHcC-CCCCeEEEEEChHHHHHHHHHhc-----cCCc
Confidence 4789999999 9999974 5799999999999999999999996 6 89999998866532 233221 2223
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.+.. ...+..++++.+++.+.....+.+++++||.++ ...+..+++.+.+.+ +.+++.+. .+. ....
T Consensus 82 ~~~~~--gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~~~--~~~----~~~~ 151 (234)
T 1vpa_A 82 LGIVE--GGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLALKN--SDA----LVRV 151 (234)
T ss_dssp EEEEE--CCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEEEC--CSE----EEEE
T ss_pred eEEeC--CCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEec--CCc----EEEE
Confidence 33322 223467788888887742124678888999975 456888988876554 23334443 222 1223
Q ss_pred cCCCCceeEEeccCCCcccCccc-ceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhh
Q 015225 159 DPNTKELLHYTEKPETFVSDLIN-CGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILS 237 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~-~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 237 (411)
+ +++ + .+.++ ..+.. -.-++|+.+.+..+.+. + +.+ .+...
T Consensus 152 ~-~~g-v-~~~~r-----~~~~~~~~p~~f~~~~l~~~~~~----------------------------~-~~~-~~~~~ 193 (234)
T 1vpa_A 152 E-NDR-I-EYIPR-----KGVYRILTPQAFSYEILKKAHEN----------------------------G-GEW-ADDTE 193 (234)
T ss_dssp E-TTE-E-EEECC-----TTEEEEEEEEEEEHHHHHHHHTT----------------------------C-CCC-SSSHH
T ss_pred C-CCC-c-ccCCh-----hHeeeecCCccccHHHHHHHHHh----------------------------c-CCC-CcHHH
Confidence 4 455 5 55443 11110 12237777665443321 0 000 11111
Q ss_pred cccC-CCceEEEeecceeeecCCccchhhcchHH
Q 015225 238 PLAG-KKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 238 ~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
.+.. ..++..+..++.|.+|+||+||..++..+
T Consensus 194 ~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l 227 (234)
T 1vpa_A 194 PVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA 227 (234)
T ss_dssp HHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred HHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHH
Confidence 1111 34666666667899999999999887644
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-18 Score=166.54 Aligned_cols=263 Identities=11% Similarity=0.024 Sum_probs=166.8
Q ss_pred CCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEc----CCcccCCChHHHHHHHHhc--CC---------eeEEE
Q 015225 77 LKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLN----CDVCCSFPLPDLLEAHKRY--GG---------MGTML 141 (411)
Q Consensus 77 ~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~----~D~i~~~~l~~~l~~~~~~--~~---------~~~~~ 141 (411)
++.+++++.++..+++++.++.+.+.+ ..++|+. +|.+...++.+++..|.+. +. ..++.
T Consensus 111 ~g~~vt~~~~~~pL~~a~~i~~~d~~~-----~~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~ 185 (496)
T 3c8v_A 111 KGQHFVCDGKMIPLHDDEVITIKDSFL-----NKTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVD 185 (496)
T ss_dssp TTCEEEETTEEEECSSCCEEEEESCEE-----ESCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEE
T ss_pred cCCEEEEEecccchhHhhhHHhhhhcC-----CceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceee
Confidence 566788877777788887754433322 1237888 5887766677776666542 21 22333
Q ss_pred EEecCcccc--cceeEEEEcCCCCceeEEeccCCC--cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhh
Q 015225 142 VIKVSAESA--HQFGELIADPNTKELLHYTEKPET--FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEAL 217 (411)
Q Consensus 142 ~~~~~~~~~--~~~g~v~~d~~~~~v~~~~e~~~~--~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (411)
+... .++ ..++.+ + .+++....++|.. ..++.....+|.|.++.++.+......
T Consensus 186 L~~l--~d~li~~~~~~--~--~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~~~~---------------- 243 (496)
T 3c8v_A 186 LSTI--HNSVVRYFSYV--Q--TGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQEAG---------------- 243 (496)
T ss_dssp SCEE--ESCEECTTCEE--E--SSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBCCTT----------------
T ss_pred HHHH--HHHHHHHHhhh--c--CCceEEeeecCCceecccccccceEEEcCHHHHHHHHhhccC----------------
Confidence 3333 333 344444 2 4566666666643 123445567999988766532211000
Q ss_pred hhcccCCCCceeeeccchhhcccCCCceEEEeecceeeec--CCccchhhcchHHHh-hhhhcCccccccCCCCCCcEEc
Q 015225 218 QSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQI--KTPGMSLKCSSLYLA-LFKITSPQLLASGNGITSATIA 294 (411)
Q Consensus 218 ~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I--~t~~d~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 294 (411)
.. .++.|.|+ ..++++++....... ......+.. ...+.+.+.
T Consensus 244 -------------------------~n-----~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a----~I~p~a~i~ 289 (496)
T 3c8v_A 244 -------------------------SC-----PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGA----SVSGYAVIK 289 (496)
T ss_dssp -------------------------SC-----CBSHHHHHHHTTTHHHHHHHHC--------CCTTC----EECTTSEEE
T ss_pred -------------------------cc-----ccceeeehhccchHHHHHHhhccccccCcccCCCc----EECCCcEEe
Confidence 00 01222222 122333222110000 000001111 112356677
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
+++.||+++.|+++|.| ++++||++|.|+++|+|.+|+||++|.|++++.|.+++||++|.||++|.|.++.. .
T Consensus 290 g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~-----~ 363 (496)
T 3c8v_A 290 GDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSES-----S 363 (496)
T ss_dssp SSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSS-----S
T ss_pred CCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCC-----c
Confidence 88899999999999999 68999999999999999999999999999999999999999999999999988421 2
Q ss_pred eeEECCCCEECCCcEEc---ceEEcCCCEEcCCCC
Q 015225 375 ITILGEAVTVEDEVVVI---NSIVLPNKVLNVSVQ 406 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v~---~~~i~~~~~v~~~~~ 406 (411)
.++||++|.||++++|. +..|++++.+...+.
T Consensus 364 ~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~v~ 398 (496)
T 3c8v_A 364 PLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYIR 398 (496)
T ss_dssp CEEECTTCEECTTCEEECSSCEEECSSEEECSEES
T ss_pred ceEECCCCEECCCCEEecCCCcEeCCCCEEEEEec
Confidence 36999999999999987 899999999886544
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=141.69 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=87.6
Q ss_pred CCc--eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCC
Q 015225 1 MEK--VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELK 78 (411)
Q Consensus 1 m~~--~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~ 78 (411)
|++ |.+|||||| .|+||. .||+|+|++|+|||+|+++.+..+ ++++|+|++++..+.+.+++.. ++
T Consensus 1 m~~~~~~~iIlA~G--~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~ 68 (197)
T 2wee_A 1 MTATQITGVVLAAG--RSNRLG-----TPKQLLPYRDTTVLGATLDVARQA-GFDQLILTLGGAASAVRAAMAL----DG 68 (197)
T ss_dssp -CCSEEEEEEEECC--CCTTTS-----SCGGGSEETTEEHHHHHHHHHHHT-TCSEEEEEECTTHHHHHHHSCC----TT
T ss_pred CCCCceEEEEECCC--CcccCC-----CCeEcCeeCCccHHHHHHHHHHhc-CCCcEEEEeCCCHHHHHHHhcc----CC
Confidence 544 679999999 999994 599999999999999999999997 7999999988766666666543 33
Q ss_pred cceEEee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHH
Q 015225 79 VPVRYLK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEA 130 (411)
Q Consensus 79 ~~i~~v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~ 130 (411)
. .++. +....|++++++.+++.+. ...+.+++++||.++ ...+..+++.
T Consensus 69 ~--~~~~~~~~~~g~~~~i~~al~~~~-~~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 69 T--DVVVVEDVERGCAASLRVALARVH-PRATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp S--EEEECC----CCHHHHHHHHTTSC-TTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred C--EEEECCCcccCHHHHHHHHHHHhc-ccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 3 3333 2344689999999998773 124789999999975 4567888876
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=147.04 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=96.4
Q ss_pred CCCceEEEeecce----eeecCCccchhhcchHHHhhhhhcCcccccc-------C---CCCCCcEEcCCcEECCCCEEC
Q 015225 241 GKKQLYTYETMDF----WEQIKTPGMSLKCSSLYLALFKITSPQLLAS-------G---NGITSATIAGDVYIHPSAKVH 306 (411)
Q Consensus 241 ~~~~v~~~~~~~~----~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~i~~~~~v~ 306 (411)
...+++.+...++ |.++++ ++.+++.++..+.......... + ...+++.+.+++.||+++.|+
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~ 113 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIM 113 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEEC
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEEC
Confidence 4456666666655 888877 6667766664443221111000 0 012455666667777777777
Q ss_pred CCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCCCEECCCcEEecCCcCCccccee
Q 015225 307 PTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWKSSLGRWARVQGNGDYNAKLGIT 376 (411)
Q Consensus 307 ~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~~~~~~~~~ 376 (411)
++++|.++++||++|.|+.+|.|. +++||++|.|++++.+.+ ++|+++|.||.++.|..+ +
T Consensus 114 ~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~---------~ 184 (240)
T 3r8y_A 114 MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEG---------V 184 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTT---------C
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCC---------c
Confidence 777776677777777777777775 678888888888887765 788888888888887666 7
Q ss_pred EECCCCEECCCcEEcceEEcCCCEE
Q 015225 377 ILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 377 ~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
.||++++|+++++|.+. +.+++++
T Consensus 185 ~Ig~~~~I~~gsvV~~~-vp~~~v~ 208 (240)
T 3r8y_A 185 TVGKGAVVAAGAVVTED-VPPYTVV 208 (240)
T ss_dssp EECTTCEECTTCEECSC-BCTTEEE
T ss_pred EECCCCEECCCCEECCC-cCCCcEE
Confidence 77888888777777443 4444444
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=137.77 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=144.0
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i 81 (411)
++.||||||| .|+||+. ..||+|++++|+|||+|+++.|.+.+.+++|+|++++.. +.+++++.. .+
T Consensus 7 ~~~aIIlAaG--~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-------~v 74 (231)
T 3q80_A 7 EVVAIVPAAG--SGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-------RA 74 (231)
T ss_dssp CEEEEEECCC--CCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-------GC
T ss_pred ceEEEEECCC--CCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-------Ce
Confidence 3689999999 9999975 689999999999999999999998645899999988665 445544432 34
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhcc-CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEE-NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~-~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
.++.. ..+..++++.+++.+... ..+.++++.||.++ ...+..+++.+.+ +.++.+.+.++ .++..+ .
T Consensus 75 ~~v~g--g~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~--~dt~~~----~ 145 (231)
T 3q80_A 75 MIVAG--GSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPL--SDTIKA----V 145 (231)
T ss_dssp EEEEC--CSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECC--SSCEEE----E
T ss_pred EEEcC--CCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEec--cCCEEE----E
Confidence 55542 234578999998887521 13688999999986 4568899888765 34566666666 554332 3
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
| +++.|....+. ..-....+ -+.|+.+.+....+..... + .+ +.+ +|....
T Consensus 146 ~-~~g~v~~~~~r---~~l~~~qT-Pq~F~~~~L~~a~~~~~~~---n-------------------~~-~~~-TD~~~~ 196 (231)
T 3q80_A 146 D-ANGVVLGTPER---AGLRAVQT-PQGFTTDLLLRSYQRGSLD---L-------------------PA-AEY-TDDASL 196 (231)
T ss_dssp C-TTSBEEECCCG---GGEEEECS-CEEEEHHHHHHHHHHHTC----------------------------CC-SSSHHH
T ss_pred c-CCCcEEEecch---hheEEEcC-CcEEEHHHHHHHHHHHHhh---c-------------------CC-CCC-CcHHHH
Confidence 5 56777766443 11222344 4788887654333221100 0 01 112 555554
Q ss_pred ccC-CCceEEEeecceeeecCCccchhhcchH
Q 015225 239 LAG-KKQLYTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 239 l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
+.. +.++..+.-...+..|++|+|+..+...
T Consensus 197 ~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~ 228 (231)
T 3q80_A 197 VEHIGGQVQVVDGDPLAFKITTKLDLLLAQAI 228 (231)
T ss_dssp HHHTTCCCEEEECCGGGCCCCSHHHHHHHHHH
T ss_pred HHHcCCcEEEEECCccccCcCCHHHHHHHHHH
Confidence 433 4578877766678889999999887653
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=136.07 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=84.6
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| .|+||+ ..||+|+|++|+|||+|+++.+.. ++++|+|++++..+.+ . .++..
T Consensus 4 mm~~~~iILAgG--~s~Rmg----~~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~~~~----~----~~~~~ 67 (201)
T 1e5k_A 4 MTTITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQEIY----Q----ASGLK 67 (201)
T ss_dssp CCSEEEEEECCC--CCSSSC----SSCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSHHHH----H----TTSCC
T ss_pred CCcceEEEEcCC--CCCcCC----CCCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcHHHH----h----hcCCe
Confidence 667999999999 999996 369999999999999999999985 5899999988765332 1 13333
Q ss_pred eEEeeCC-CC-CCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHH
Q 015225 81 VRYLKED-KP-HGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEA 130 (411)
Q Consensus 81 i~~v~~~-~~-~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~ 130 (411)
++... .. .|+.++++.+++.+. .+.+++++||.++ ...+..+++.
T Consensus 68 --~v~~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 68 --VIEDSLADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp --EECCCTTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred --EEecCCCCCCCHHHHHHHHHHhCC---CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 34332 22 689999999998875 5789999999964 4457777765
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-17 Score=141.06 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=113.3
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| .|+||+ .||+|+|++|+|||+|+++.+..+ +++|+|++++... +++. +
T Consensus 12 ~~~~~~iILA~G--~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~---~~~~------~-- 71 (201)
T 2e8b_A 12 SKVNTCYVLAGG--KSKRFG-----EDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK---FSFL------N-- 71 (201)
T ss_dssp CSCCEEEEEEES--SCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG---GGGG------T--
T ss_pred ccCceEEEECCC--CCccCC-----CCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH---hhcC------C--
Confidence 445789999999 999996 599999999999999999999984 8999998876543 1111 2
Q ss_pred eEEee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-C-CChHH-HHHHHHhcCCeeEEEEEecCcccccceeEE
Q 015225 81 VRYLK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-S-FPLPD-LLEAHKRYGGMGTMLVIKVSAESAHQFGEL 156 (411)
Q Consensus 81 i~~v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~-~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v 156 (411)
+.++. +....|++++++.+++.+. .+.+++++||.++ + ..+.. ++ +.++++.
T Consensus 72 ~~~v~~~~~~~g~~~~i~~al~~~~---~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~--------------- 127 (201)
T 2e8b_A 72 APVVLDEFEESASIIGLYTALKHAK---EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS--------------- 127 (201)
T ss_dssp CCEEECCCSSCCHHHHHHHHHHHCS---SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE---------------
T ss_pred ceEEecCCCCCCcHHHHHHHHHHcC---CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE---------------
Confidence 34444 3345799999999998874 5889999999985 3 23455 44 1222111
Q ss_pred EEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 157 IADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
..+ ++ ....+|+| |++++++.+.+.... +.+.+ .+++
T Consensus 128 ~~~---g~-------------~~p~~giy-~~~~~~~~l~~~~~~-------------------------g~~~~-~~~l 164 (201)
T 2e8b_A 128 VAK---TE-------------KLHTLVGV-YSKKLLEKIEERIKK-------------------------GDYRI-WALL 164 (201)
T ss_dssp EEE---SS-------------SEEEEEEE-EEGGGHHHHHHHHHT-------------------------TCCCH-HHHH
T ss_pred ecC---Cc-------------eeeEEEEE-eChhHHHHHHHHHHc-------------------------CCchH-HHHH
Confidence 001 11 13457999 999988877753211 11112 3444
Q ss_pred hcccCCCceEEEee--cceee--ecCCccchhhcchH
Q 015225 237 SPLAGKKQLYTYET--MDFWE--QIKTPGMSLKCSSL 269 (411)
Q Consensus 237 ~~l~~~~~v~~~~~--~~~~~--~I~t~~d~~~a~~~ 269 (411)
+.+ ++..+.. .+.|. ||+||+||.++...
T Consensus 165 ~~~----~~~~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 165 KDV----GYNEVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp HHH----CCEEEECCGGGGGGGCCSCCC---------
T ss_pred HHC----CeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence 432 3444444 35788 99999999887653
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=147.65 Aligned_cols=188 Identities=14% Similarity=0.217 Sum_probs=142.2
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhcc--------CCC----CcEEEEecccchHHH
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKR--------IPN----LAQIFLIGFYEEREF 66 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~--------~~g----i~~I~Iv~~~~~~~i 66 (411)
.+|.+|||||| .||||+. ..||+|+|| .|+|+++++++.+.. . | +..+++.+.+..+.+
T Consensus 101 ~kvavViLAGG--~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~-G~~~~ip~vImtS~~t~e~t 174 (505)
T 1jv1_A 101 NKVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYY-GNKCIIPWYIMTSGRTMEST 174 (505)
T ss_dssp TCEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHH-SSCCCCCEEEEECTTTHHHH
T ss_pred CceEEEEEcCC--ccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCHHHH
Confidence 46899999999 9999964 789999999 799999999999766 2 4 777777777778889
Q ss_pred HHHHhhhcccCCc---ceEEeeCC---------------------CCCCChHHHHHHHH-----HhhccCCCeEEEEcCC
Q 015225 67 ALYVSSISNELKV---PVRYLKED---------------------KPHGSAGGLYYFRD-----MIMEENPSHIILLNCD 117 (411)
Q Consensus 67 ~~~~~~~~~~~~~---~i~~v~~~---------------------~~~g~~~~l~~~~~-----~i~~~~~~~~lv~~~D 117 (411)
.+++++. +.+|. +|.+..|. .+.|+++.+..+.. .+.....++++|+++|
T Consensus 175 ~~~f~~~-~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~D 253 (505)
T 1jv1_A 175 KEFFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVD 253 (505)
T ss_dssp HHHHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHhh-hhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECC
Confidence 9999874 44565 46655432 46788988866542 3322235899999999
Q ss_pred cc-cCCChHHHHHHHHhcCCeeEEEEEe-cCcccccceeEEEEcCCCCceeEEeccCCC----------cccCcccceEE
Q 015225 118 VC-CSFPLPDLLEAHKRYGGMGTMLVIK-VSAESAHQFGELIADPNTKELLHYTEKPET----------FVSDLINCGVY 185 (411)
Q Consensus 118 ~i-~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~----------~~~~~~~~Giy 185 (411)
.+ ...+...++.+|.++++++++.+++ . .....+|.+..+....++++|.|.|.. ...++.|+|+|
T Consensus 254 n~L~~~~d~~~lg~~~~~~~~~~~~v~~k~--~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~ 331 (505)
T 1jv1_A 254 NILVKVADPRFIGFCIQKGADCGAKVVEKT--NPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANH 331 (505)
T ss_dssp BTTCCTTCHHHHHHHHHTTCSEEEEEEECC--STTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEE
T ss_pred ccccccchHHHHHHHHHcCCCEEEEEEEcc--CCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeEEEE
Confidence 97 6677778999999999999988876 4 567789988775122245666666531 12467899999
Q ss_pred EeCHHHHHHhhhh
Q 015225 186 VFTPDFFTAIQGV 198 (411)
Q Consensus 186 i~~~~~~~~l~~~ 198 (411)
+|+.++++.+.+.
T Consensus 332 ~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 332 FFTVPFLRDVVNV 344 (505)
T ss_dssp EEEHHHHHHHHHT
T ss_pred EecHHHHHHHHHh
Confidence 9999998877653
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=139.57 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=122.2
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.||||||| .|+||++ . ||+|+|++|+|||+|+++. .. ++++|+|+++. . +.+ +.. . .+.+
T Consensus 26 ~~aiILAgG--~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~~-~~~~ivvv~~~-~--~~~-~~~----~--~v~~ 86 (236)
T 2px7_A 26 VSVLIPAAG--NGLRLGR---G-PKAFLQVGGRTLLEWTLAA--FR-DAAEVLVALPP-G--AEP-PKG----L--GAVF 86 (236)
T ss_dssp CEEEEECCC------------C-CGGGCBCSSSBHHHHHHHH--TT-TCSEEEEEECT-T--CCC-CTT----C--SCEE
T ss_pred eEEEEEcCC--CCccCCC---C-CCeEEEECCEEHHHHHHHh--cC-CCCeEEEEeCH-H--HHH-hhc----C--CcEE
Confidence 569999999 9999985 4 9999999999999999999 43 79999998875 1 111 211 1 3455
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.. ..+..++++.+++.+. .+.+++++||.++ ...+..+++.+.+.+ +.+.+.+. .+...+ .|
T Consensus 87 ~~~--~~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~~----~~-- 151 (236)
T 2px7_A 87 LEG--GATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPV--PDTLMA----PE-- 151 (236)
T ss_dssp EEC--CSSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEEC--CSEEEE----EC--
T ss_pred EeC--CCchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEec--CCcEEE----ec--
Confidence 542 3467889999888774 5789999999874 455888888876553 33334443 232211 23
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHH-hhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTA-IQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++++..+.++.. ..... ..++|+++.+.. +...... + +.+ .+....+.
T Consensus 152 ~G~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~~~-------------------------g-~~~-~d~~~ll~ 200 (236)
T 2px7_A 152 GEAYGRVVPREA---FRLVQ-TPQGFFTALLREAHAYARRK-------------------------G-LEA-SDDAQLVQ 200 (236)
T ss_dssp SSSCEEEECGGG---CEEEC-SCEEEEHHHHHHHHHHHHHH-------------------------T-CCC-SSHHHHHH
T ss_pred CCeEEecCChHh---hcccc-CCeEEcHHHHHHHHHHHHhc-------------------------C-CCc-hhHHHHHH
Confidence 567766554311 11122 356788875543 3221110 0 001 22211111
Q ss_pred -CCCceEEEeecceeeecCCccchhhcchHH
Q 015225 241 -GKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 241 -~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
...++..+..++.|.+|+||+||..+...+
T Consensus 201 ~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 231 (236)
T 2px7_A 201 ALGYPVALVEGEATAFKITHPQDLVLAEALA 231 (236)
T ss_dssp HTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred HcCCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence 234677777777899999999998886544
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=130.01 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=89.0
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEE-eeEECCCCEECCCcEEecC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~ 366 (411)
+.+.+.+++.||+++.|++++.|++++.||++|.|++++.|.+ ++||++|.|++++.|. ++.|++++.||+++.+.+.
T Consensus 8 p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~ 87 (192)
T 3mqg_A 8 PTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNV 87 (192)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSC
T ss_pred CCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecc
Confidence 3566677777778888888888888888888888888888874 8888888888888886 7788888888887766542
Q ss_pred CcCC------cccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 367 GDYN------AKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 367 ~~~~------~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
..+. .....++||++++||.++.| .+|+|++|++|++++|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~ 143 (192)
T 3mqg_A 88 YNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFA 143 (192)
T ss_dssp SSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred cCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCC
Confidence 2211 11133667777666666655 5899999999999998754
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=131.89 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=37.2
Q ss_pred EECCCCEECCCCEECC--CcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE----eeEECCCCEECCCcEE
Q 015225 298 YIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL----NSIIGWKSSLGRWARV 363 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----~s~i~~~~~ig~~~~i 363 (411)
.+|+++.|++++.|.+ ++.||++|.|+++|.|. +++||++|.|+.+|.|. +++||++|.|++++.|
T Consensus 34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp EECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred EECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 4455555555555544 45555555555555555 55666666666666662 2566666666666655
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=130.20 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=91.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC----CcEECCCcEECCCcEEEe---------------eEECCCCEECCCcEEEe-
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP----NVSISANVRVGAGVRLIS---------------CIVLDDVEIKENAVVLN- 348 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~----~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i~~- 348 (411)
+.+.+.+++.||+++.|+++|.|.+ +++||++|.|+++|.|.. ++||++|.|++++.|.+
T Consensus 50 ~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~ 129 (213)
T 3kwd_A 50 SFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGP 129 (213)
T ss_dssp TTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEE
T ss_pred CCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCC
Confidence 4677778889999999999999963 589999999999999985 89999999999999996
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
++||++|.||+++.|.+ ++||++++|+++++|.+++|++++.|+.
T Consensus 130 v~Ig~~v~IG~~a~I~~----------~~Ig~~~~Igags~V~~~~i~~~~~v~~ 174 (213)
T 3kwd_A 130 AYIGDGCFIGFRSTVFN----------ARVGAGCVVMMHVLIQDVEIPPGKYVPS 174 (213)
T ss_dssp EEECTTCEECTTCEEEE----------EEECTTCEECSSCEEESCEECTTBEECT
T ss_pred CEECCCCEECCCCEEeC----------cEECCCCEEcCCCEECCcEeCCCCEECC
Confidence 99999999999999987 9999999999999996665555555554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-15 Score=127.06 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=88.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+.+.+.++++||+++.|+++++|.++ ++||++|.|+++|.|. +++||++|.|++++.|.+++|+++|.||.+
T Consensus 23 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 102 (173)
T 1xhd_A 23 DYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMG 102 (173)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTT
T ss_pred CCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCC
Confidence 35566667788888888888888754 7899999999999998 799999999999999999999999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.|.++ +.||++++|+++++| ++..+++++++.
T Consensus 103 ~~i~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~ 136 (173)
T 1xhd_A 103 SIILDG---------AEIGEGAFIGAGSLVSQGKKIPPNTLAF 136 (173)
T ss_dssp CEECTT---------CEECTTCEECTTCEECTTCEECTTEEEE
T ss_pred CEEcCC---------CEECCCCEECCCCEECCCcEeCCCCEEE
Confidence 999887 899999999999888 457777777663
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-16 Score=136.35 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=93.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| .|+||++ .||+|+|++|+|||+|+++.+.++ ++++|+|+++++.+.+.+++.... .+...+.+
T Consensus 1 m~aiIlA~G--~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~-~~~~v~vv~~~~~~~i~~~~~~~~-~~~~~~~~ 72 (196)
T 3rsb_A 1 MDALIMAGG--KGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKS-KVNNIFIATSPNTPKTKEYINSAY-KDYKNIVV 72 (196)
T ss_dssp CEEEEEC------CGGGG----SCGGGCEETTEEHHHHHHHHHHSS-SCCCEEEECCTTCHHHHHHHHHHT-TTTTEEEE
T ss_pred CEEEEECCC--CCCcCCC----CCccEEEECCEEHHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHHhhc-cCCCCEEE
Confidence 689999999 9999987 799999999999999999999997 799999999877777888887621 12224454
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHh-----cCCeeEEEEEec
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKR-----YGGMGTMLVIKV 145 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~-----~~~~~~~~~~~~ 145 (411)
+. ....|++++++.+++.+ .+.+++++||.++ ...+..+++.+.+ .+.++.+.+.+.
T Consensus 73 ~~-~~~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~ 136 (196)
T 3rsb_A 73 ID-TSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPK 136 (196)
T ss_dssp ---------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEET
T ss_pred EE-CCCCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEc
Confidence 43 34678888888887766 4899999999974 5679999999986 555665566554
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=127.13 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=92.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+.+.+.+++.||+++.|++++.|.++ +.||++|.|+++|.|. +++||++|.|++++.|.+++|+++|.||.+
T Consensus 21 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 100 (173)
T 1v3w_A 21 ENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGIS 100 (173)
T ss_dssp TTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTT
T ss_pred CCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCC
Confidence 45667778888999999999999864 8999999999999998 599999999999999999999999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEE
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVL 401 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v 401 (411)
+.+.++ +.||++++|+++++| +++.|++++++
T Consensus 101 ~~i~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~~v 133 (173)
T 1v3w_A 101 SVILDG---------AKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp CEECTT---------CEECSSEEECTTCEECTTCEECTTEEE
T ss_pred CEEeCC---------CEECCCCEECCCCEECCCcEeCCCcEE
Confidence 999988 999999999999998 46777777777
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=131.76 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+ |.+|||||| .|+||++ ||+|+|++|+|||+|+++.+... +++|++++..+.+.+++. .+
T Consensus 1 M~-~~~iIlAgG--~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~~~~~~~~~-----~~-- 61 (197)
T 3d5n_A 1 MN-IGVIILAAG--EGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYVNEMLPLLM-----DQ-- 61 (197)
T ss_dssp CC-EEEEEECSC--CTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTHHHHGGGCT-----TS--
T ss_pred Cc-eEEEEECCc--CcccCCC-----CeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCHHHHHHHhc-----CC--
Confidence 54 899999999 9999964 99999999999999999999873 677777665444443322 23
Q ss_pred eEEeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 81 VRYLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 81 i~~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+ ++.. ....|++++++.+++.+.. .+.+++++||.++ ...+..+++.+ +.+++
T Consensus 62 ~-~v~~~~~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~ 117 (197)
T 3d5n_A 62 I-VIYNPFWNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCK 117 (197)
T ss_dssp C-EEECTTGGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCS
T ss_pred E-EEECCCCCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCc
Confidence 3 3432 3346899999999998751 3689999999975 34577777765 44444
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=128.75 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=90.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCc---EECCCcEECCCcEE------------EeeEECCCCEECCCcEEEeeEECC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNV---SISANVRVGAGVRL------------ISCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~---~ig~~~~i~~~~~i------------~~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
+.+.+.+++.||+++.|+++++|.+++ .||++|.|+++|.| .+++||++|.|+++|.|.+++||+
T Consensus 26 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~ 105 (187)
T 3r3r_A 26 TSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGN 105 (187)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECS
T ss_pred CCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECC
Confidence 355666777888888888888887644 99999999999999 679999999999999999999999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+|.||.++.|..+ +.||++++|+++++| .+..+++++++..
T Consensus 106 ~~~Ig~~~~I~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G 147 (187)
T 3r3r_A 106 RVLVGMGSIVLDG---------AIIEDDVMIGAGSLVPQHKRLESGYLYLG 147 (187)
T ss_dssp SEEECTTCEECTT---------CEECSSEEECTTCEECTTCEECTTEEEET
T ss_pred CCEECCCCEECCC---------CEECCCCEECCCCEECCCcCcCCCcEEEe
Confidence 9999999999887 999999999999988 4588888877654
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=127.29 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=81.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEE-----------------eeEECCCCEECCCcEEEe
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLI-----------------SCIVLDDVEIKENAVVLN 348 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~-----------------~~~i~~~~~i~~~~~i~~ 348 (411)
+.+.+.+++.||+++.|+++|+|. +++.||++|.|+++|.|. +++||+++.|+.++.+.+
T Consensus 23 ~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~ 102 (194)
T 3tv0_A 23 VESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQA 102 (194)
T ss_dssp TTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECC
T ss_pred CCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEee
Confidence 356666677777777777777774 356788888888888884 257888888888888888
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+.|++++.|+.++.|..+ +.||++|.|+++++| +++.|+++++|-.
T Consensus 103 ~~Ig~~~~Ig~~~~I~~g---------v~IG~~~~IgagsvV~~~~~Ip~~svv~G 149 (194)
T 3tv0_A 103 MKMGDNNVIESKAYVGRN---------VILTSGCIIGACCNLNTFEVIPENTVIYG 149 (194)
T ss_dssp SEECSSCEECTTCEECTT---------EEECSSCEECTTCEECCCEEECTTEEEES
T ss_pred eeecccceecceeeECCe---------EEECCCCEECCCCEECCCcEECCCCEEEC
Confidence 888888888888888887 888888888888888 5677888877754
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=126.57 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=86.7
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEe-----------------eE
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLN-----------------SI 350 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----------------s~ 350 (411)
++.+++.|+++++|+++|.|.+++.||++|.|+++|+|. +.+||++|.|+++|+|.+ ++
T Consensus 8 k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~ 87 (194)
T 3tv0_A 8 KTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMI 87 (194)
T ss_dssp ----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEE
T ss_pred hcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceE
Confidence 456788999999999999999999999999999999996 479999999999999953 57
Q ss_pred ECCCCEECCCcEEecCCcCCccc-ceeEECCCCEECCCcEE-cceEEcCCCEEcCC--CCCcc
Q 015225 351 IGWKSSLGRWARVQGNGDYNAKL-GITILGEAVTVEDEVVV-INSIVLPNKVLNVS--VQEEI 409 (411)
Q Consensus 351 i~~~~~ig~~~~i~~~~~~~~~~-~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~--~~~~~ 409 (411)
||+++.|+.++.+.+. .+ ..+.|+.++.|+.++.| .+|+|++|++|..+ +|+..
T Consensus 88 Ig~~~~i~~~~~i~~~-----~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~s 145 (194)
T 3tv0_A 88 IGTNNVFEVGCYSQAM-----KMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENT 145 (194)
T ss_dssp ECSSCEECTTCEECCS-----EECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTE
T ss_pred ECCcceEecceeEeee-----eecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCC
Confidence 8888888888776540 00 01445555555555555 68999999999988 77653
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-15 Score=128.20 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=71.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE------eeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI------SCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~------~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
.+.+.+++.||+++.|+++|+|.+ +++||++|.|+++|.|. +++||++|.|++++.+.+++||++|.||.+
T Consensus 45 ~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 124 (191)
T 3ixc_A 45 NARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMG 124 (191)
T ss_dssp TCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTT
T ss_pred CCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCC
Confidence 445555566666666666666653 33677777777777776 677777777777777777777777777777
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.|.++ +.||++++|+++++| ++..+++++++.
T Consensus 125 ~~I~~~---------~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~ 158 (191)
T 3ixc_A 125 SIVMDR---------AVMEEGSMLAAGSLLTRGKIVKSGELWA 158 (191)
T ss_dssp CEECTT---------CEECTTCEECTTCEECTTCEECTTEEEE
T ss_pred CEEeCC---------eEECCCCEECCCCEECCCcCcCCCeEEE
Confidence 777776 777777777777766 356666666543
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=124.23 Aligned_cols=104 Identities=10% Similarity=0.124 Sum_probs=88.6
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----eeEECCCCEECCCcEEec
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~ 365 (411)
+.+.|++++.|++++.|.+++.||++|.|+++|.|.. ++||++|.|+++|.|. +++||+++.|++++.+.+
T Consensus 11 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~ 90 (173)
T 1xhd_A 11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS 90 (173)
T ss_dssp BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred CCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeC
Confidence 4567899999999999988999999999999999985 8999999999999998 799999999999999876
Q ss_pred CCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEc--CCCCCc
Q 015225 366 NGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLN--VSVQEE 408 (411)
Q Consensus 366 ~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~--~~~~~~ 408 (411)
++||++++|+.++.| .+|+|+++++|. ..+|+.
T Consensus 91 ----------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~ 132 (173)
T 1xhd_A 91 ----------CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPN 132 (173)
T ss_dssp ----------CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ----------CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCC
Confidence 778888877777766 467777777777 345554
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=128.21 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=88.9
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEE------eeEECCCCEECCCcEE
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVL------NSIIGWKSSLGRWARV 363 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~------~s~i~~~~~ig~~~~i 363 (411)
.+.+.|++++.|++++.|.+++.||++|.|+++|.|. +++||++|.|+++|.|. +++||++|.||+++.+
T Consensus 31 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i 110 (191)
T 3ixc_A 31 GVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL 110 (191)
T ss_dssp TBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE
T ss_pred CCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE
Confidence 4567899999999999999999999999999999997 34999999999999998 8999999999999988
Q ss_pred ecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEc--CCCCCc
Q 015225 364 QGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLN--VSVQEE 408 (411)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~--~~~~~~ 408 (411)
.+ ++||++++|++++.| .+|+|++|++|. ..+|+.
T Consensus 111 ~~----------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~ 154 (191)
T 3ixc_A 111 HA----------CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSG 154 (191)
T ss_dssp CS----------CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred EC----------CEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCC
Confidence 76 778887777777766 467777787777 445543
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-15 Score=137.13 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=107.2
Q ss_pred eeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcC-CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEee
Q 015225 254 WEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAG-DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISC 332 (411)
Q Consensus 254 ~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~ 332 (411)
..+|..+.||-...+..+.+|......+... ..+++.+ ++.+++++.|++++.|+++++||++|+||++|+|.+|
T Consensus 26 l~ri~al~~f~~v~~g~lgg~i~~e~nl~~~----~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~ 101 (334)
T 2pig_A 26 LRQVIAVTDFNDVKAGTSGGWVDADNVLSQQ----GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRA 101 (334)
T ss_dssp EEEEEESSCBTTBCTTCEEEEESSTTSBCSS----SSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESC
T ss_pred EEEEEEeeccccccCCccCCeEeccCCcccC----CceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeE
Confidence 5667777888777666666665432333322 3678888 8899999999999999999999999999999999999
Q ss_pred EECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc------------------CCcccceeEECCCCEECCCcEEcceE
Q 015225 333 IVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD------------------YNAKLGITILGEAVTVEDEVVVINSI 394 (411)
Q Consensus 333 ~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~------------------~~~~~~~~~i~~~~~i~~~~~v~~~~ 394 (411)
+|++++.|+++++|.+++|++++.|+.++++.++.. ++.+++.++|+++|.|+.+++|.+++
T Consensus 102 ~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~sv 181 (334)
T 2pig_A 102 DISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAF 181 (334)
T ss_dssp EEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEE
T ss_pred EEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcE
Confidence 999999999999999998888888888877765422 22334456666667777776665544
Q ss_pred EcCCCEEc
Q 015225 395 VLPNKVLN 402 (411)
Q Consensus 395 i~~~~~v~ 402 (411)
|+++..|.
T Consensus 182 I~~~a~I~ 189 (334)
T 2pig_A 182 IEHRAEVF 189 (334)
T ss_dssp ECTTCEEC
T ss_pred EcCCCEEC
Confidence 44444433
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=140.88 Aligned_cols=124 Identities=13% Similarity=0.195 Sum_probs=92.7
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
||++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.+.+++++|+|+++ ..+.+++++. .
T Consensus 1 Mmki~aIILAaG--~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~--------~ 66 (371)
T 1w55_A 1 MSEMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK--------N 66 (371)
T ss_dssp -CCEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS--------S
T ss_pred CCccEEEEECCC--CCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC--------C
Confidence 788999999999 9999974 579999999999999999999998447999999987 4444433221 1
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
+.++. ...|..++++.+++.+. .+.+++++||.++ ...+..+++.+.+. ++++.+.+.
T Consensus 67 v~~v~--~g~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~~ 126 (371)
T 1w55_A 67 YEFIE--GGDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKV 126 (371)
T ss_dssp SEEEE--CCSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECC
T ss_pred CEEEe--CCCChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEEe
Confidence 44553 23567799999888774 5789999999975 44588888777554 334444443
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=129.71 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=87.0
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCc----EECCCcEECCCcEEEe------------------------eEECCCCEE
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNV----SISANVRVGAGVRLIS------------------------CIVLDDVEI 340 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~----~ig~~~~i~~~~~i~~------------------------~~i~~~~~i 340 (411)
+.+.+.+++.||+++.|+++|+|.+.. +||++|.|+++|.|.. ++||++|.|
T Consensus 70 ~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~I 149 (247)
T 1qre_A 70 PQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSL 149 (247)
T ss_dssp TTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEE
T ss_pred CCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEE
Confidence 355666678888888888888887644 9999999999999973 899999999
Q ss_pred CCCcEEEe-eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 341 KENAVVLN-SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 341 ~~~~~i~~-s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+++|.|.+ ++||++|.||.++.|.+ +.||++++|+++++|.++.|+++++|+
T Consensus 150 g~~~~I~~~~~Ig~~v~IG~~a~I~~----------v~Ig~~~~IgagsvV~~~~I~~~~~v~ 202 (247)
T 1qre_A 150 AHQSQVHGPAAVGDDTFIGMQAFVFK----------SKVGNNCVLEPRSAAIGVTIPDGRYIP 202 (247)
T ss_dssp CTTCEEEEEEEECTTCEECTTCEEEE----------EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred CCCCEEcCCcEECCCCEECCCCEEec----------eEECCCCEECCCCEECCeEeCCCCEEC
Confidence 99999997 99999999999999987 899999999999988555555555443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=130.49 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=70.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEE-------------EeeEECCCCEECCCcEEE--------e
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-------------ISCIVLDDVEIKENAVVL--------N 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i-------------~~~~i~~~~~i~~~~~i~--------~ 348 (411)
.+.+.+++.||+++.|+++++|.+++.||++|.|+++|.| .+++||++|.|+++|+|. +
T Consensus 31 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~ 110 (265)
T 4e6u_A 31 YCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNAL 110 (265)
T ss_dssp TCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSE
T ss_pred CeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCc
Confidence 3444445555555555555555555666666666666666 356666666666666665 2
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||+++.|+.++.+..+.. +...+ +.+.||++++|+.++.| .+|+|+++++|++++|+..
T Consensus 111 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~ 187 (265)
T 4e6u_A 111 TKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYV 187 (265)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTE
T ss_pred eEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEcccCCCCe
Confidence 45555544444444422110 11111 22777777777777766 5788888888888888754
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=126.36 Aligned_cols=106 Identities=26% Similarity=0.302 Sum_probs=89.1
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEEee------------EECCCCEECCCcEEEeeEECC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLISC------------IVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~~~------------~i~~~~~i~~~~~i~~s~i~~ 353 (411)
+.+.+.+++.||+++.|++++.|.+ ++.||++|.|+++|.|..+ +||++|.|+++|.|.+++||+
T Consensus 30 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~ 109 (189)
T 3r1w_A 30 RSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGN 109 (189)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECS
T ss_pred CCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECC
Confidence 3556666778888888888888873 3589999999999999764 999999999999999999999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+|.||.++.|..+ +.||++++|+++++| ++..+++++++..
T Consensus 110 ~~~Ig~~~~i~~~---------v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G 151 (189)
T 3r1w_A 110 RVLIGMKSMIMDG---------AIVEDEVIVAAGATVSPGKVLESGFVYMG 151 (189)
T ss_dssp SEEECTTCEECTT---------CEECSSCEECTTCEECTTCEECTTEEEET
T ss_pred CcEECCCCEEcCC---------CEECCCCEEccCCEECCCCEeCCCCEEEC
Confidence 9999999999887 999999999999988 4688888887754
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-14 Score=130.20 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=75.6
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEE--------------EeeEECCCCEECCCcEEEe-------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL--------------ISCIVLDDVEIKENAVVLN------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i--------------~~~~i~~~~~i~~~~~i~~------- 348 (411)
.+.+.+++.||++++|+++++|.+++.||++|.|++++.| .+++||++|.|+++|+|..
T Consensus 28 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~ 107 (266)
T 3r0s_A 28 YAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDG 107 (266)
T ss_dssp TCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTS
T ss_pred CCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCc
Confidence 4455555566666666666666666777777777777777 4677777777777777763
Q ss_pred -eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 349 -SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 349 -s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||+++.|+.++.+..+.. +...+ +.+.||++++||.++.| .+|+|++++.|++++|+-.
T Consensus 108 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~~ 185 (266)
T 3r0s_A 108 FTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFC 185 (266)
T ss_dssp EEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSCBCTTE
T ss_pred cEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecccCCCe
Confidence 56666555555555433211 11111 23777777777777766 4677777777888887653
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=129.85 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=62.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEE--------------EeeEECCCCEECCCcEEE--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL--------------ISCIVLDDVEIKENAVVL-------- 347 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i--------------~~~~i~~~~~i~~~~~i~-------- 347 (411)
.+.+.+++.||++++|+++|+|.+++.||++|.|+++|.| .+++||++|.|+++|+|.
T Consensus 24 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~ 103 (259)
T 3hsq_A 24 YSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSP 103 (259)
T ss_dssp TCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBC
T ss_pred CCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCc
Confidence 3344444444444444444555444555555555555555 234555555555555554
Q ss_pred -----------------eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 348 -----------------NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 348 -----------------~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
++.|++++.|+.++.+.++ +.||++++||.++.| .+|+|++++.|++
T Consensus 104 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~---------v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~ 174 (259)
T 3hsq_A 104 TVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGH---------VTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQ 174 (259)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTT---------CEECSSCEECSSEEECTTCEECTTCEECSSEEECS
T ss_pred EEECCCcEEcCCcEECCCcEECCccEEcCCceECCc---------cEECCCcEEeCCCEECCCCEECCCCEECCCCEEcc
Confidence 3444444444444444333 777777777777666 5788888999999
Q ss_pred CCCCcc
Q 015225 404 SVQEEI 409 (411)
Q Consensus 404 ~~~~~~ 409 (411)
++|+..
T Consensus 175 dvp~~~ 180 (259)
T 3hsq_A 175 DVPPYS 180 (259)
T ss_dssp BBCTTE
T ss_pred cCCCCc
Confidence 888754
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=130.39 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=66.6
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEE-------------EeeEECCCCEECCCcEEEe--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-------------ISCIVLDDVEIKENAVVLN-------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i-------------~~~~i~~~~~i~~~~~i~~-------- 348 (411)
.+.+.+++.||+++.|+++++|.+++.||++|.|+++|.| .+++||++|.|+++|+|..
T Consensus 46 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~ 125 (283)
T 4eqy_A 46 YAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGV 125 (283)
T ss_dssp TCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTSE
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCCc
Confidence 3344444445555555555555555555555555555555 2455666666666666553
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||+++.|+.++.+..+.. +...+ +.+.||++++||.++.| .+|+|++++.|++++|+-.
T Consensus 126 ~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~ 202 (283)
T 4eqy_A 126 TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFV 202 (283)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSBBCTTE
T ss_pred eEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecccCCCc
Confidence 45555444444444322100 11111 22777777777777766 4678888888888887653
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-14 Score=121.75 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=55.0
Q ss_pred CcEEcCCcEEC--CCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe-eEECCCCEECCCcEEec
Q 015225 290 SATIAGDVYIH--PSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN-SIIGWKSSLGRWARVQG 365 (411)
Q Consensus 290 ~~~~~~~~~i~--~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-s~i~~~~~ig~~~~i~~ 365 (411)
.+.+.+++.|| +++.|+++++|.+++.||++|.|+++|.|. ++.||++|.|+.++.|.+ ++||+++.||.++.+..
T Consensus 81 ~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~ 160 (194)
T 3bfp_A 81 SALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLP 160 (194)
T ss_dssp TCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred eEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECC
Confidence 34555555666 666666666666666666666666666664 566666666666666653 56666666666655555
Q ss_pred CCcCCcccceeEECCCCEECCCcEE
Q 015225 366 NGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 366 ~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+ +.||++++|+++++|
T Consensus 161 ~---------~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 161 N---------LSLADDSILGGGATL 176 (194)
T ss_dssp T---------CEECTTCEECTTCEE
T ss_pred C---------CEECCCCEECCCCEE
Confidence 5 555665555555555
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=126.56 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred CCcEEcC--CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEE----------------
Q 015225 289 TSATIAG--DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVV---------------- 346 (411)
Q Consensus 289 ~~~~~~~--~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i---------------- 346 (411)
..+.+.+ .+.||+++.|+++|+|.+++.||++|.|+++|.|. +++||++|.|+++|+|
T Consensus 43 ~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~ 122 (205)
T 3vbi_A 43 KKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPT 122 (205)
T ss_dssp TTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTT
T ss_pred CCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcc
Confidence 3556655 78899999999999999999999999999999993 5999999999999999
Q ss_pred ----------EeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 347 ----------LNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 347 ----------~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
.+++||++|.||.+|.|..+ +.||++|+|+++++|.+. +.+++++.
T Consensus 123 ~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---------v~Ig~~~~Ig~gsvV~~~-v~~~~v~~ 178 (205)
T 3vbi_A 123 IPNQYKNVKTGKVILKKHVIIGAHSIIFPN---------VVIGEGVAVGAMSMVKES-LDDWYIYV 178 (205)
T ss_dssp SCGGGCCCEECCEEECTTCEECTTCEECSS---------CEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred cccccceeccCCEEECCCCEECCCCEEcCC---------CEECCCCEEcCCCEECCc-cCCCeEEE
Confidence 35788888888888888887 888888888888888544 45555553
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=123.10 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=86.6
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEE------------EeeEECCCCEECC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVV------------LNSIIGWKSSLGR 359 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i------------~~s~i~~~~~ig~ 359 (411)
...+|+++.|++++.|.+++.||++|.|+++|.|.. ++||++|.|+++|.| .+++||++|.|++
T Consensus 15 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~ 94 (187)
T 3r3r_A 15 FPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGH 94 (187)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECT
T ss_pred CcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECC
Confidence 457888888888888888899999999999999973 599999999999999 5799999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEc--CCCCCc
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLN--VSVQEE 408 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~--~~~~~~ 408 (411)
++.|.+ ++||++++|+++++| .+|+|+++++|. ..+|+.
T Consensus 95 ~~~i~~----------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~ 142 (187)
T 3r3r_A 95 KVMLHG----------CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESG 142 (187)
T ss_dssp TCEEES----------CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTT
T ss_pred CCEEeC----------cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCC
Confidence 999877 777777777777766 467788888887 556654
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=128.99 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=60.2
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEE-------------EeeEECCCCEECCCcEEE--------ee
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-------------ISCIVLDDVEIKENAVVL--------NS 349 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i-------------~~~~i~~~~~i~~~~~i~--------~s 349 (411)
+.+.+++.||++++|+++|+|.+++.||++|.|+++|.| .+++||++|.|+++|+|. .+
T Consensus 26 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~ 105 (270)
T 1j2z_A 26 CVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKT 105 (270)
T ss_dssp CEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEE
T ss_pred CEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccE
Confidence 334444444444444444444445555555555555555 234444444444444443 23
Q ss_pred EECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 350 IIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 350 ~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+||+++.|+.++.|..+.. +...+ +.+.||++++||.++.| .+|+|++++.|++++|+..
T Consensus 106 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~dvp~~~ 181 (270)
T 1j2z_A 106 LIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYC 181 (270)
T ss_dssp EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTE
T ss_pred EECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCcEecccCCCCe
Confidence 4444433333333321100 00111 22666666666666655 5788888999988888754
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-14 Score=119.30 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=86.5
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~ 366 (411)
...+++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|. +++||+++.|++++.+.+
T Consensus 10 ~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 88 (173)
T 1v3w_A 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG- 88 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES-
T ss_pred CCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC-
Confidence 456888888888888888999999999999999985 8999999999999998 589999999999999876
Q ss_pred CcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC--CCCCc
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV--SVQEE 408 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~--~~~~~ 408 (411)
++||++++|+.++.| .+|+|+++++|.. .+|+.
T Consensus 89 ---------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~ 130 (173)
T 1v3w_A 89 ---------AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDY 130 (173)
T ss_dssp ---------CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTT
T ss_pred ---------CEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCC
Confidence 777777777777665 4788888888874 45543
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=123.06 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=59.8
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
.+.+.+.+.+++++.|+++++|.+++.||++|.|+.+|.|. +++||++|.|+.++.+. +++||++|.||.++.|..+
T Consensus 105 ~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~- 183 (220)
T 4ea9_A 105 SAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPG- 183 (220)
T ss_dssp TCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT-
T ss_pred CCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC-
Confidence 44556666667777777777776667777777777676665 46666666666666666 3666666666666666655
Q ss_pred cCCcccceeEECCCCEECCCcEEc
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||+++.|+++++|.
T Consensus 184 --------~~Ig~~~~igagsvv~ 199 (220)
T 4ea9_A 184 --------VTIGADTIVGAGGVVV 199 (220)
T ss_dssp --------CEECTTCEECTTCEEC
T ss_pred --------cEECCCCEECCCCEEc
Confidence 5666666666555553
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-14 Score=121.74 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=86.2
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEee------------EECCCCEECC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLNS------------IIGWKSSLGR 359 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~s------------~i~~~~~ig~ 359 (411)
...+++++.|++++.|.+++.||++|.|+++|.|. ++.||++|.|+++|.|..+ +||++|.|++
T Consensus 19 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~ 98 (189)
T 3r1w_A 19 SPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGH 98 (189)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECT
T ss_pred CCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECC
Confidence 34688888888888888899999999999999996 3599999999999999865 9999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEc--CCCCCc
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLN--VSVQEE 408 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~--~~~~~~ 408 (411)
++.|.+ ++||++|+|++++.| .+|+|+++++|. ..+|+.
T Consensus 99 ~~~i~~----------~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~ 146 (189)
T 3r1w_A 99 QAMLHG----------CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESG 146 (189)
T ss_dssp TCEEES----------CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred CCEEeC----------cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCC
Confidence 999877 777777777777766 478888888888 555554
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=120.72 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=71.5
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE----------------EeeEEC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV----------------LNSIIG 352 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i----------------~~s~i~ 352 (411)
.+.+.+++.||+++.|++++.|++++.||++|.|++++.|. +++|+++|.|+.++.+ .+++|+
T Consensus 27 ~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig 106 (192)
T 3mqg_A 27 WVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVR 106 (192)
T ss_dssp TCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEEC
T ss_pred CCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccccccCCcEEC
Confidence 34445555555555555566665556666666666666663 5666666666666655 347999
Q ss_pred CCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 353 WKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 353 ~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
++|.||.++.|..+ +.||+++.|+++++|... +.+++++-
T Consensus 107 ~~v~IG~~~~I~~g---------~~Ig~~~~IgagsvV~~~-vp~~~v~~ 146 (192)
T 3mqg_A 107 QGATLGANCTVVCG---------ATIGRYAFVGAGAVVNKD-VPDFALVV 146 (192)
T ss_dssp TTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred CCcEECCCCEECCC---------CEECCCCEEcCCCEECcc-cCCCCEEE
Confidence 99999999999998 999999999999999543 34555443
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.4e-14 Score=126.05 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=81.8
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEE-EeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccce
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+.++++.|++++.|.+++.||++|+|+++|.| .+++||++|.|+.+|.|. +++||++|.|++++.+.+...++. .+.
T Consensus 87 ~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~-~~~ 165 (240)
T 3r8y_A 87 LKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPS-AKP 165 (240)
T ss_dssp CTTCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTT-SCC
T ss_pred ccCCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCC-CCC
Confidence 34667777778888778888888888888888 478889999999888887 889999999999988876432221 122
Q ss_pred eEECCCCEECCCcE------E-cceEEcCCCEEcCCCCCcc
Q 015225 376 TILGEAVTVEDEVV------V-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 376 ~~i~~~~~i~~~~~------v-~~~~i~~~~~v~~~~~~~~ 409 (411)
++||++|+||.+++ | .+|+|++|++|..++|+..
T Consensus 166 ~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~ 206 (240)
T 3r8y_A 166 VIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYT 206 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCc
Confidence 55555555555554 4 5788888999988888754
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=126.45 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=68.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-------- 348 (411)
.+.+.+++.||+++.|+++|+|.+++.||++|.|+++|+|. +++||++|.|+++|+|..
T Consensus 29 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~ 108 (262)
T 2qia_A 29 FCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGL 108 (262)
T ss_dssp TCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSE
T ss_pred CCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCc
Confidence 34444445555555555555555556666666666666664 456666666666666652
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||+++.|+.++.+..+.. +...+ +.+.||++++|+.++.| .+|+|++++.|++++|+..
T Consensus 109 ~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~ 185 (262)
T 2qia_A 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYV 185 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTE
T ss_pred CEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECCcCCCCe
Confidence 55555555555544432100 00111 22566666666666655 5788999999999888754
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=129.94 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=64.5
Q ss_pred cEEcCCcEECCCCEECCCCEE-----CCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEe---------eEECCCC
Q 015225 291 ATIAGDVYIHPSAKVHPTAKI-----GPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLN---------SIIGWKS 355 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i-----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------s~i~~~~ 355 (411)
..+.+++.|++++.|+++++| .+++.||++|.|+.++.|.+ +.||++|.|+.++.+.+ ++||++|
T Consensus 130 ~~I~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v 209 (304)
T 3eg4_A 130 FRAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNC 209 (304)
T ss_dssp CEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTC
T ss_pred cEEcCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCC
Confidence 344444444444444444444 44566666666666666653 77777777777777766 8999999
Q ss_pred EECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 356 SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 356 ~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
.||.+|.|..+ +.||++|+|+++++|.
T Consensus 210 ~IG~~a~I~~g---------v~IG~~avIgagsvV~ 236 (304)
T 3eg4_A 210 FIGARSEVVEG---------CIVREGSVLGMGVFIG 236 (304)
T ss_dssp EECTTCEECTT---------CEECTTCEECTTCEEC
T ss_pred EECCCCEEcCC---------cEECCCcEECCCCEEc
Confidence 99999998887 8999999999988773
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=120.41 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=83.2
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.+|||||| .|+||+ .||+|++++|+|||+|+++.+... +|+|++++ .+.+..+.. .++..+..
T Consensus 1 m~aiILAgG--~s~Rmg-----~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~-~~~~~~~~~----~~~~~~v~ 64 (208)
T 3ngw_A 1 MKVAVLVGG--VGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRD-EKQAEKLSS----RYEAEFIW 64 (208)
T ss_dssp CEEEEECCC--CCTTTT-----SCGGGCEETTEEHHHHHHHHHTTS----EEEEECSS-HHHHHHHHT----TSCSCEEC
T ss_pred CEEEEECCC--chhhCC-----CCCcccEECCeeHHHHHHHHhcCC----CEEEEECC-HHHHHHHHH----hcCCeEEe
Confidence 689999999 999995 599999999999999999999873 78888764 333333222 23433322
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeE
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~ 139 (411)
......|..++++.+++.+ .+.+ +++||+++ ...+..+++.+.+.+.+++
T Consensus 65 -d~~~~~G~~~si~~gl~~~----~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v 116 (208)
T 3ngw_A 65 -DLHKGVGSIAGIHAALRHF----GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208)
T ss_dssp -CTTCCCSHHHHHHHHHHHH----SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred -cCCCCCChHHHHHHHHHHc----CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEE
Confidence 2233457779999998877 3778 99999986 4457888887765555543
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=128.34 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=75.5
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEE---------eeEECCCCEECCC
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL---------NSIIGWKSSLGRW 360 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~s~i~~~~~ig~~ 360 (411)
+.+.++++|++++.|+++ .|..++.||++|.|+.++.|.+ +.||++|.|+.++.+. .++||++|.||.+
T Consensus 111 a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~ 189 (276)
T 3gos_A 111 ATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGAR 189 (276)
T ss_dssp CEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTT
T ss_pred cEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCC
Confidence 334444444444444444 4445677777777777777765 7888888888888875 4889999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEEc-ce-------------EEcCCCEEc-CCCC
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVVI-NS-------------IVLPNKVLN-VSVQ 406 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~-------------~i~~~~~v~-~~~~ 406 (411)
|.|..+ +.||++|+|++|++|. ++ .|+++++|. .++|
T Consensus 190 a~I~~g---------v~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P 241 (276)
T 3gos_A 190 SEVVEG---------VIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLP 241 (276)
T ss_dssp CEECTT---------CEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEE
T ss_pred CEECCC---------CEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCcc
Confidence 999888 8999999999998883 22 677788873 4344
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=121.52 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=85.7
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe---------------eEECCC
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN---------------SIIGWK 354 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------------s~i~~~ 354 (411)
....+++++.|+++|.|.+++.||++|.|+++|.|. +++||++|.|+++|.|.. ++||++
T Consensus 38 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~ 117 (213)
T 3kwd_A 38 AEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN 117 (213)
T ss_dssp CCCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT
T ss_pred CCCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC
Confidence 345788888889999998899999999999999996 479999999999999985 899999
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE------cceEEcCCCEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV------INSIVLPNKVL 401 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v------~~~~i~~~~~v 401 (411)
|.|+.++.|.++ ++||++|+||++++| .+|+|+++++|
T Consensus 118 v~Ig~~~~I~~~---------v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 118 VSITHMALIHGP---------AYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI 161 (213)
T ss_dssp CEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred cEECCCcEEcCC---------CEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence 999999999887 999999999999986 45666666666
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=124.77 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe---------------eEECCCCEECCCcEEE-eeEEC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS---------------CIVLDDVEIKENAVVL-NSIIG 352 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i~-~s~i~ 352 (411)
+.+.+.+++.|++++.|+++|+|++++.||++|.|+++|.|.+ ++||++|.|+++++|. +++||
T Consensus 13 ~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig 92 (273)
T 3fs8_A 13 EGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIG 92 (273)
T ss_dssp TTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEEC
T ss_pred CCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEEC
Confidence 3566667777777777777777777788888888888888874 7888888888888886 77777
Q ss_pred CCCEECCCcEEecC
Q 015225 353 WKSSLGRWARVQGN 366 (411)
Q Consensus 353 ~~~~ig~~~~i~~~ 366 (411)
+++.|+.++.|..+
T Consensus 93 ~~~~Ig~~~~I~~~ 106 (273)
T 3fs8_A 93 DNFQTGHKVTIREN 106 (273)
T ss_dssp TTCEECSSCEECSS
T ss_pred CCCEECCceEECCC
Confidence 77777777666544
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=123.72 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=71.4
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE-------------EeeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV-------------LNSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~s~i~~~ 354 (411)
+.+.+.+++.|++++.|+++|+|++++.||++|+|+++|+|. ++.||++|.|+.+|.| .+++||++
T Consensus 6 p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~ 85 (270)
T 1j2z_A 6 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGED 85 (270)
T ss_dssp TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCC
Confidence 357788889999999999999999999999999999999998 8999999999999999 57899999
Q ss_pred CEECCCcEEecC
Q 015225 355 SSLGRWARVQGN 366 (411)
Q Consensus 355 ~~ig~~~~i~~~ 366 (411)
+.|++++.|..+
T Consensus 86 ~~I~~~~~I~~~ 97 (270)
T 1j2z_A 86 NLIREFCMINPG 97 (270)
T ss_dssp CEECTTCEECCC
T ss_pred CEECCCeEEcCC
Confidence 999999999764
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=129.40 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=22.7
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCC-CCc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSV-QEE 408 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~-~~~ 408 (411)
+.||++|+|+.++.| .+|+|+.++.|++++ |+.
T Consensus 264 v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~ 304 (357)
T 4e79_A 264 TKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAG 304 (357)
T ss_dssp CEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCE
T ss_pred cEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCC
Confidence 677777777777766 467777777777777 443
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=120.88 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=75.7
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCc
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~ 368 (411)
..+.+.+++++++.+++++.|.++++|++++.||++|.|. +++|+++|+||++|.|. ++.|+.++.||++|.|+.+
T Consensus 100 ~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~-- 177 (220)
T 4ea9_A 100 NAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVG-- 177 (220)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTT--
T ss_pred CcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCC--
Confidence 4567778888888888888888888888888888888887 67777777777777766 4666666666665555444
Q ss_pred CCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCCCcc
Q 015225 369 YNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~~~~ 409 (411)
++|.++++|| .+|+|++|++|.+++|+..
T Consensus 178 -------~~i~~~~~Ig-----~~~~igagsvv~~~v~~~~ 206 (220)
T 4ea9_A 178 -------ARVIPGVTIG-----ADTIVGAGGVVVRDLPDSV 206 (220)
T ss_dssp -------CEECTTCEEC-----TTCEECTTCEECSCBCTTC
T ss_pred -------CEEcCCcEEC-----CCCEECCCCEEccccCCCc
Confidence 4444444444 5688999999999998754
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-13 Score=122.65 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=66.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE-------------E-eeEECC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV-------------L-NSIIGW 353 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~-~s~i~~ 353 (411)
+.+.+.+.+.|++++.|+++|.|++++.||++|+|+++|.|. ++.||++|.|+.++.| . +++||+
T Consensus 5 p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~ 84 (259)
T 3hsq_A 5 PTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGD 84 (259)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECS
T ss_pred CCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECC
Confidence 356778888888888888888888888999999999999988 4999999999999999 3 688999
Q ss_pred CCEECCCcEEecC
Q 015225 354 KSSLGRWARVQGN 366 (411)
Q Consensus 354 ~~~ig~~~~i~~~ 366 (411)
++.|++++.|..+
T Consensus 85 ~~~Ig~~~~I~~~ 97 (259)
T 3hsq_A 85 HNIFREYSNIHKG 97 (259)
T ss_dssp SCEECTTCEEECC
T ss_pred CcEECCCCEECCC
Confidence 9999999988754
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=117.74 Aligned_cols=105 Identities=23% Similarity=0.193 Sum_probs=76.6
Q ss_pred cEEcCCcEECCCCEEC--CCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecC
Q 015225 291 ATIAGDVYIHPSAKVH--PTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~ 366 (411)
..+++++++++++.|+ +++.|.++++|+.+++||++|.|. +++|+++|.||++|.|. +++|..++.||+++.|+.+
T Consensus 76 ~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~ 155 (194)
T 3bfp_A 76 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGIN 155 (194)
T ss_dssp CEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred cccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCC
Confidence 4567788888888888 888888888888888888888885 67777777777777766 5666666666666555554
Q ss_pred CcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCCCcc
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~~~~ 409 (411)
++|.++++|+ .+|+|++|++|.+++|+..
T Consensus 156 ---------~~i~~~~~Ig-----~~~~Igagsvv~~~v~~~~ 184 (194)
T 3bfp_A 156 ---------SCVLPNLSLA-----DDSILGGGATLVKNQDEKG 184 (194)
T ss_dssp ---------CEECTTCEEC-----TTCEECTTCEECSCBCSCC
T ss_pred ---------CEECCCCEEC-----CCCEECCCCEEccccCCCC
Confidence 4444444444 5688899999999988654
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=127.45 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=71.5
Q ss_pred CcEEcCCcEECCCCEECCCCEECC-----CcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP-----NVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWK 354 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~ 354 (411)
+..+.++++|++++.|+++|+|++ ++.||++|.|+.+++|. ++.||++|.|+.++.|.+ ++||++
T Consensus 145 ~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~ 224 (316)
T 3tk8_A 145 GFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDN 224 (316)
T ss_dssp CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT
T ss_pred CcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCC
Confidence 455666666666666666666654 44455555555545553 355666666666666654 688888
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc-ce-------------EEcCCCEEc-CCCC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI-NS-------------IVLPNKVLN-VSVQ 406 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~-------------~i~~~~~v~-~~~~ 406 (411)
|.||.+|.|..+ +.||++|+|++|++|. ++ .|+++++|. .++|
T Consensus 225 v~IG~~a~I~~g---------v~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVvaGsvP 282 (316)
T 3tk8_A 225 CFIGARSEVVEG---------VIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLP 282 (316)
T ss_dssp CEECTTCEECTT---------CEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEE
T ss_pred CEECCCCEEcCC---------CEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEECCCCc
Confidence 888888888877 8888888888888883 33 677788874 4344
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=125.58 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=27.7
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
.+.||++++||.++.| .+|+|++++.|++++|+..+
T Consensus 168 ~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~dvp~~~~ 210 (305)
T 3t57_A 168 HVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKYMM 210 (305)
T ss_dssp TCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred CCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcccCCCCeE
Confidence 3677777777777665 57899999999999987543
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=123.61 Aligned_cols=120 Identities=21% Similarity=0.157 Sum_probs=82.2
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
.+.+.+++.||+++.|++++.|++++.||+++.|+.++.|. +++||++|.|++++.|. ++.|++++.++.++.+.+..
T Consensus 82 ~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~ 161 (273)
T 3fs8_A 82 ENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDP 161 (273)
T ss_dssp TCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCS
T ss_pred CCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCC
Confidence 44455556666666666666666667777777777777665 67777777777777777 67777777777777766643
Q ss_pred cCCc-ccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 368 DYNA-KLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 368 ~~~~-~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
.++. ....+.||++++||.++.| .+|+|++|++|++++|+..
T Consensus 162 ~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~ 211 (273)
T 3fs8_A 162 TPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKET 211 (273)
T ss_dssp SSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred CCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCc
Confidence 3221 1223677777777766655 5899999999999998764
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-13 Score=126.00 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=26.1
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCC
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~ 406 (411)
.+.||++|+|+.++.| .+++|+.++.|++++|
T Consensus 258 ~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~ 296 (341)
T 3eh0_A 258 SLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPIT 296 (341)
T ss_dssp TEEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBC
T ss_pred CcEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcC
Confidence 4788888888888877 5788888888888887
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-13 Score=121.17 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=71.1
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE--------------EeeEECC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV--------------LNSIIGW 353 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------~~s~i~~ 353 (411)
+.+.+.+++.||+++.|+++|+|++++.||++|+|++++.|. ++.||++|.|+.++.| .+++||+
T Consensus 9 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~ 88 (266)
T 3r0s_A 9 PSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGK 88 (266)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECT
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECC
Confidence 467788888999999999999999999999999999999998 7999999999999999 5899999
Q ss_pred CCEECCCcEEecC
Q 015225 354 KSSLGRWARVQGN 366 (411)
Q Consensus 354 ~~~ig~~~~i~~~ 366 (411)
++.|++++.|..+
T Consensus 89 ~~~Ig~~~~I~~~ 101 (266)
T 3r0s_A 89 NATIREFATINSG 101 (266)
T ss_dssp TCEECTTCEEECC
T ss_pred CCEECCceEecCC
Confidence 9999999999864
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-13 Score=127.05 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=31.0
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEE
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARV 363 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i 363 (411)
+.+.+++.|++++.|+++++|++++.||++|+|+++|.|. ++.||++|.|+.+++|. +++||++|.|++++.|
T Consensus 109 a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 183 (357)
T 4e79_A 109 ARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI 183 (357)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence 3333444444444444444444444444444444444443 34444444444444442 3444444444444444
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-13 Score=120.58 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=75.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------eeEECCCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------NSIIGWKS 355 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~s~i~~~~ 355 (411)
.+.+.+++.||+++.|+++|+|++++.||++|.|+++|.|. ++.||++|.|+.+++|. +++||+++
T Consensus 11 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~ 90 (262)
T 2qia_A 11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRN 90 (262)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCc
Confidence 56667777788888888888888888888888888888888 89999999999999997 68999999
Q ss_pred EECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 356 SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 356 ~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
.|++++.|..+.... .+.++||++++|+.++.|
T Consensus 91 ~Ig~~~~I~~~~~~~--~~~~~IG~~~~Ig~~~~I 123 (262)
T 2qia_A 91 RIRESVTIHRGTVQG--GGLTKVGSDNLLMINAHI 123 (262)
T ss_dssp EECTTCEEECCCTTT--TSEEEECSSCEECTTCEE
T ss_pred eeCCCCEEcCCccCC--CCcCEECCCcEEeeeeEE
Confidence 999999998642110 012555555555555444
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-13 Score=124.78 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=38.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEE-EeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL-ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
.+.+.+++.|++++.|+++++|+++++||++|+|+++|.| .++.||++|.|+.+++|. +++||++|.|++++.+.
T Consensus 103 ~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~ 179 (341)
T 3eh0_A 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVG 179 (341)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEE
T ss_pred CcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEEC
Confidence 4455555555555555555555555555555555555555 245555555555555553 45555555555555443
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-13 Score=122.77 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=70.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------eeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------NSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~s~i~~~ 354 (411)
+.+.+.+++.|++++.|+++|+|++++.||++|+|+++|.|. ++.||++|.|+.+|.|. +++||++
T Consensus 27 p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~ 106 (283)
T 4eqy_A 27 PTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDR 106 (283)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCC
Confidence 467888888899999999999999999999999999999998 79999999999999993 7899999
Q ss_pred CEECCCcEEecC
Q 015225 355 SSLGRWARVQGN 366 (411)
Q Consensus 355 ~~ig~~~~i~~~ 366 (411)
+.|++++.|..+
T Consensus 107 ~~Ig~~~~I~~g 118 (283)
T 4eqy_A 107 NTIREFTTIHTG 118 (283)
T ss_dssp CEECTTEEEECC
T ss_pred cccCcceeEccc
Confidence 999999999864
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=125.64 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=25.6
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCC-CCc
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSV-QEE 408 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~-~~~ 408 (411)
.+.||++|+|+.++.| .+|+|+.++.|++++ |+.
T Consensus 280 ~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k~v~~~~ 321 (372)
T 3pmo_A 280 SAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRSITEPG 321 (372)
T ss_dssp TCEECSSCEECTTCEECSSCEECSSEEECTTCEECSCBCSCE
T ss_pred CCEECCCeEEeCCCEECCCCEECCCCEEeeCCEEccCcCCCC
Confidence 3777777777777766 478888888888888 544
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-13 Score=124.33 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=7.7
Q ss_pred cchhhcccCCC-ceEEE
Q 015225 233 QDILSPLAGKK-QLYTY 248 (411)
Q Consensus 233 ~d~l~~l~~~~-~v~~~ 248 (411)
++++..|-+.+ ++..+
T Consensus 74 ~~~~~~l~~~~~rva~~ 90 (316)
T 3tk8_A 74 AHAIEQLDRGALRVAEK 90 (316)
T ss_dssp HHHHHHHHTTSSCSEEE
T ss_pred HHHHHHHHhCCCEEeee
Confidence 55555554333 45444
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=119.95 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE-------------EeeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV-------------LNSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~s~i~~~ 354 (411)
+.+.+.+++.|++++.|+++|+|++++.||++|+|+++++|. ++.||++|.|+.++.| .+++||++
T Consensus 12 p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~ 91 (265)
T 4e6u_A 12 STAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNN 91 (265)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCC
Confidence 467788888888888888899998899999999999999998 6999999999999999 47899999
Q ss_pred CEECCCcEEecC
Q 015225 355 SSLGRWARVQGN 366 (411)
Q Consensus 355 ~~ig~~~~i~~~ 366 (411)
+.|++++.|..+
T Consensus 92 ~~Ig~~~~I~~g 103 (265)
T 4e6u_A 92 NLIREHCSLHRG 103 (265)
T ss_dssp CEECTTCEEECC
T ss_pred eEECCceEECcc
Confidence 999999999854
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=130.49 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=131.0
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccCCC------CcEEEEecccchHHHHHHHh-hhc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRIPN------LAQIFLIGFYEEREFALYVS-SIS 74 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~~g------i~~I~Iv~~~~~~~i~~~~~-~~~ 74 (411)
++.+|||||| .||||+. ..||+|+|++ |+|++++.++++..+ + +.-+++.+.+..+.+++|++ ++
T Consensus 75 k~avViLAGG--lGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~-~~~~g~~ip~viMtS~~t~e~t~~~f~~~~- 147 (505)
T 2oeg_A 75 STVVLKLNGG--LGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYL-RQHCSEHLRFMLMDSFNTSASTKSFLKARY- 147 (505)
T ss_dssp TEEEEEEECC--CCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHH-HHHTCTTCEEEEEECHHHHHHHHHHHHHHC-
T ss_pred cceEEEEcCC--cccccCC---CCCCcccccCCCCcHHHHHHHHHHHH-HHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-
Confidence 5789999999 9999994 8899999999 999999999999986 5 44445555666788899998 53
Q ss_pred ccCCc---ceEEe-----------------------eCCCCCCChHHHHHH-----HHHhhccCCCeEEEEcCCccc-CC
Q 015225 75 NELKV---PVRYL-----------------------KEDKPHGSAGGLYYF-----RDMIMEENPSHIILLNCDVCC-SF 122 (411)
Q Consensus 75 ~~~~~---~i~~v-----------------------~~~~~~g~~~~l~~~-----~~~i~~~~~~~~lv~~~D~i~-~~ 122 (411)
+.+|. ++.+. ....+.|+++.+... ++.+.....++++|.++|.+. ..
T Consensus 148 ~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~ 227 (505)
T 2oeg_A 148 PWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATI 227 (505)
T ss_dssp HHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCC
T ss_pred hccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCcccccc
Confidence 23443 23211 111245999988644 344332335899999999987 45
Q ss_pred ChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcC-----CCCc---------eeEEeccCCC--------cccCc
Q 015225 123 PLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADP-----NTKE---------LLHYTEKPET--------FVSDL 179 (411)
Q Consensus 123 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~-----~~~~---------v~~~~e~~~~--------~~~~~ 179 (411)
++ .++.+|.++++++++.+++. ..+ ..+|++..++ .+|+ ++++.+-|.. ....+
T Consensus 228 D~-~llg~~~~~~ad~~~~v~~k--~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~ 304 (505)
T 2oeg_A 228 DK-RVLAYMEKEKIDFLMEVCRR--TESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSF 304 (505)
T ss_dssp CH-HHHHHHHHHTCSEEEEEEEC--CTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCE
T ss_pred CH-HHHHHHHhcCCcEEEEEEEe--cCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCe
Confidence 66 88999999999999998886 554 4678776621 2455 5555554432 12334
Q ss_pred ccceEEEeCHHHHHHhhh
Q 015225 180 INCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 180 ~~~Giyi~~~~~~~~l~~ 197 (411)
.|+...+|+-+.++.+.+
T Consensus 305 ~Ninn~~~~l~~l~~~~~ 322 (505)
T 2oeg_A 305 FNTNNLWIRLPVLLETMQ 322 (505)
T ss_dssp EEEEEEEEEHHHHHHHHH
T ss_pred eEEEEEEEEHHHHHHHHh
Confidence 689999999987765544
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=129.87 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=81.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~ 367 (411)
+++.+.+++.||+++.|++++.|.+++.||++|.|+++|.|. +++||++|.|+++|.|.+++|++++.|++++.+.+
T Consensus 237 ~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-- 314 (401)
T 2ggo_A 237 DNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGD-- 314 (401)
T ss_dssp SSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEES--
T ss_pred CCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcc--
Confidence 456778888999999999999999999999999999999998 79999999999999999999999999999888866
Q ss_pred cCCcccceeEECCCCEECCCcEEc
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
++||++++|++++.+.
T Consensus 315 --------~~Ig~~~~Ig~~~~i~ 330 (401)
T 2ggo_A 315 --------SVIAEDVNFGAGTLIA 330 (401)
T ss_dssp --------CEECTTCEECTTCEEC
T ss_pred --------eEECCCcEECCCcEEc
Confidence 6777777777666553
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=131.57 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=78.0
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCC------------
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKS------------ 355 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~------------ 355 (411)
+++.+.+++.||+++.|+++|.|. ++.||++|.|+++|.|.+++||++|.|+++++|. ++.||+++
T Consensus 276 ~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~ 354 (456)
T 2v0h_A 276 VNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKST 354 (456)
T ss_dssp SSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCE
T ss_pred CCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccE
Confidence 345555666677777777777776 6777888888888887777777777777766665 44444444
Q ss_pred ----------------------EECCCcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCC
Q 015225 356 ----------------------SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 356 ----------------------~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~ 406 (411)
.||+++.+.+... .....+.||++|+||.++.| .+++|+++++|++++|
T Consensus 355 i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~--~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v~ 432 (456)
T 2v0h_A 355 VGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDG--ANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVG 432 (456)
T ss_dssp ECTTCEEEEEEEEESEEECTTCEECTTCEEEECSS--SSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCBC
T ss_pred ECCCCEeccceeecCcEECCCcEECCceEEecccc--ccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCcC
Confidence 4444443332000 00013888999999988877 4788889999999888
Q ss_pred Ccc
Q 015225 407 EEI 409 (411)
Q Consensus 407 ~~~ 409 (411)
+..
T Consensus 433 ~~~ 435 (456)
T 2v0h_A 433 ENE 435 (456)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=124.08 Aligned_cols=18 Identities=17% Similarity=0.234 Sum_probs=11.6
Q ss_pred eeEECCCCEECCCcEEec
Q 015225 348 NSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~ 365 (411)
+++||++|.||+++.|..
T Consensus 222 ~v~IGd~v~IGa~~~I~~ 239 (372)
T 3pmo_A 222 GVTIGDDVEIGANTTIDR 239 (372)
T ss_dssp CEEECSSCEECTTCEEEC
T ss_pred CeEECCCCEECCCcEEcc
Confidence 466667777776666653
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=118.48 Aligned_cols=97 Identities=26% Similarity=0.345 Sum_probs=84.0
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEee-----EECCCCEECCCcEEEe----------------------
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISC-----IVLDDVEIKENAVVLN---------------------- 348 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~-----~i~~~~~i~~~~~i~~---------------------- 348 (411)
...|+++++|+++|.|.+++.||++|.|+++|.|... +||++|.|+++|+|..
T Consensus 59 ~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~ 138 (247)
T 1qre_A 59 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE 138 (247)
T ss_dssp CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred CcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCcc
Confidence 4568888888888888889999999999999999843 8999999999999972
Q ss_pred --eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE------cceEEcCCCEE
Q 015225 349 --SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV------INSIVLPNKVL 401 (411)
Q Consensus 349 --s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v------~~~~i~~~~~v 401 (411)
++||++|.||++|.|.++ ++||++|+||+++.| .+|+|++|++|
T Consensus 139 ~~v~IG~~v~Ig~~~~I~~~---------~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 139 YAVYIGNNVSLAHQSQVHGP---------AAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp ESEEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred CceEECCCCEECCCCEEcCC---------cEECCCCEECCCCEEeceEECCCCEECCCCEE
Confidence 899999999999999887 899999999999876 46677777777
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-13 Score=130.44 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=82.5
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
....+++++.|+++++|.+++.||++|.|+++|.|.+++||++|.|+++|+|.+|+||++|.|++++.+.+
T Consensus 272 ~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~g--------- 342 (496)
T 3c8v_A 272 SGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIIN--------- 342 (496)
T ss_dssp ----CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEES---------
T ss_pred cCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcC---------
Confidence 35677888999999999889999999999999999999999999999999999999999999999999876
Q ss_pred eeEECCCCEECCCcEEc-----------ceEEcCCCEEc
Q 015225 375 ITILGEAVTVEDEVVVI-----------NSIVLPNKVLN 402 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v~-----------~~~i~~~~~v~ 402 (411)
++||++|+||+++.|. +|+||+|++|.
T Consensus 343 -v~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~ 380 (496)
T 3c8v_A 343 -AHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIID 380 (496)
T ss_dssp -EEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred -ceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence 7888888888777662 44555566665
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=120.68 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=24.0
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV 346 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 346 (411)
+.+.+++.|++++.|+++|+|++++.||++|+|+++++|. ++.||++|.|+.+++|
T Consensus 14 A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 70 (305)
T 3t57_A 14 AVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVV 70 (305)
T ss_dssp SEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEe
Confidence 3344444444444444444444444444444444444443 3444444444444444
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=131.36 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.7
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||++|+||.++.| .+++|++|+.|.+++|+..
T Consensus 403 ~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~ 443 (468)
T 1hm9_A 403 TVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADA 443 (468)
T ss_dssp EEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTC
T ss_pred cEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCC
Confidence 788888888888765 5788899999999888754
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=119.81 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=72.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECC--------CCEECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGW--------KSSLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~--------~~~ig~ 359 (411)
+.++.+++.|++++.|++++.|+++ +++.++.||++|.|. +++|+++|.||++|.|. ++.|+. .+.||+
T Consensus 104 g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd 182 (276)
T 3gos_A 104 GFRVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 182 (276)
T ss_dssp CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECT
T ss_pred CcEECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECC
Confidence 5667777888888888888888765 788888888888887 67888888888888877 666644 577777
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEE
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVL 401 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v 401 (411)
+|.|+.+ |+|..+++||++++| .+++|.+++.+
T Consensus 183 ~v~IG~~---------a~I~~gv~IG~~avIgagsvV~~~~~I 216 (276)
T 3gos_A 183 NCFVGAR---------SEVVEGVIVEEGSVISMGVFIGQSTRI 216 (276)
T ss_dssp TCEECTT---------CEECTTCEECTTCEECTTCEECTTCCE
T ss_pred CCEECCC---------CEECCCCEECCCCEECCCCEECCCcEE
Confidence 7666666 666666666665555 34555544433
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=121.25 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=67.9
Q ss_pred CCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEee-------------------
Q 015225 295 GDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLNS------------------- 349 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~s------------------- 349 (411)
.++.||+++.|.+++.|. .+++||++|.|+++|.|. +++||++|.||++|.|.++
T Consensus 84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~ 163 (252)
T 3jqy_B 84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKD 163 (252)
T ss_dssp CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCC
T ss_pred CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCC
Confidence 345677777777777774 367888888888888888 7888888888888888864
Q ss_pred -EECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 350 -IIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 350 -~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+||++|.||++|.|..+ +.||++|+|+++++|.
T Consensus 164 v~Igd~v~IG~~a~I~~g---------v~IG~~~~IgagsvV~ 197 (252)
T 3jqy_B 164 IIISSYVWVGRNVSIMKG---------VSVGSGSVIGYGSIVT 197 (252)
T ss_dssp EEECSSCEECSSEEECTT---------CEECTTCEECTTCEEC
T ss_pred eEEecCcEECCCCEECCC---------CEECCCCEECCCCEEC
Confidence 77777777777777776 7777777777777773
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=120.93 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=48.5
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe---------eEECCCCEECCCcEEE-eeEECCCCEECCCcEEec
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS---------CIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~ 365 (411)
+++||+++.|.++++|+.++.||++|.|+.++.|.+ ++||++|.||.+|.|. +++||++|+||+++.|..
T Consensus 158 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~ 237 (304)
T 3eg4_A 158 GAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGK 237 (304)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcC
Confidence 333333344443444444444444444444444443 5666666666666554 455555555555544444
Q ss_pred CCcCCcccceeEECCCCEECC--CcEE-cceEEcCCCEEcCC
Q 015225 366 NGDYNAKLGITILGEAVTVED--EVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 366 ~~~~~~~~~~~~i~~~~~i~~--~~~v-~~~~i~~~~~v~~~ 404 (411)
+ +.|++++. +. ...| .++++++|++|.++
T Consensus 238 g---------~~Igd~~~-g~~~~~~Ip~~svV~~Gs~v~kd 269 (304)
T 3eg4_A 238 S---------TKIVDRAT-GEVFYGEVPPYSVVVAGTMPGKN 269 (304)
T ss_dssp T---------CCEEETTT-CCEECSEECTTEEEEEEEEECCC
T ss_pred C---------eEECccce-eeeccCEeCCCCEEecCcEecCC
Confidence 4 44444431 00 0123 46777777777665
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=124.23 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCcEECCCcEECCCcEE-EeeEECCCCEECCCcEEE---------------------eeEECCCCEECCCcEEec
Q 015225 313 PNVSISANVRVGAGVRL-ISCIVLDDVEIKENAVVL---------------------NSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~---------------------~s~i~~~~~ig~~~~i~~ 365 (411)
+++.||++|.|+++|+| .+++||++|.|+.+++|. .++|+++|.||+++.|..
T Consensus 171 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~ 245 (374)
T 2iu8_A 171 AYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDR 245 (374)
T ss_dssp TTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEE
T ss_pred CCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEcc
Confidence 33344444444444444 245556666666666653 256666666666666654
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=122.09 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=77.2
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe---------eEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN---------SIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------s~i~~~ 354 (411)
.+..|++.+.|++++.|+++++|+++++|+.++.||++|.|. +++||++|.|+.+|.|.. ++||++
T Consensus 183 ~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdn 262 (347)
T 3r5d_A 183 AGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEG 262 (347)
T ss_dssp TTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTT
T ss_pred CCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCC
Confidence 467777777777777777777777777777777777777775 378999999999998874 789999
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEc
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVL 396 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~ 396 (411)
|.||.++.| + +.||++|+|++|++| +++.|+
T Consensus 263 v~IGAnAtI--G---------VtIGd~~iIGAGSVVtkdt~I~ 294 (347)
T 3r5d_A 263 CLIGANAGI--G---------IPLGDRNIVEAGLYITAGTKVA 294 (347)
T ss_dssp CEECTTCEE--C---------SCBCTTCEECTTCEECTTCEEE
T ss_pred CEECCCCEE--e---------eEECCCCEECCCCEECCCCEEE
Confidence 999999988 4 888888888888888 566664
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-13 Score=122.69 Aligned_cols=91 Identities=22% Similarity=0.195 Sum_probs=60.4
Q ss_pred CcEEcCCcEECCCCEE--CCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKV--HPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v--~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+..+++++.||++++| +.+++|++++.||++|.|+++++|+ ++.+++++.++.++. .+++||++|.||++|.|.++
T Consensus 163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGaga~Ilgg 241 (313)
T 3q1x_A 163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGTGAKVLGN 241 (313)
T ss_dssp CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECTTCEEESS
T ss_pred CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECCCCEECCC
Confidence 4455566666666666 3345555555555555555555553 244444444444331 34599999999999999988
Q ss_pred CcCCcccceeEECCCCEECCCcEE
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++||++|+||+|++|
T Consensus 242 ---------v~IG~~a~IGagsvV 256 (313)
T 3q1x_A 242 ---------IIVGSHVRIGANCWI 256 (313)
T ss_dssp ---------CEECSSEEECTTCEE
T ss_pred ---------cEECCCCEECCCCEE
Confidence 999999999999999
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=118.66 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=90.8
Q ss_pred CCcEECCCCEECCCCEE----CCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEE----eeEECCCCEECCCcEE
Q 015225 295 GDVYIHPSAKVHPTAKI----GPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVL----NSIIGWKSSLGRWARV 363 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----~s~i~~~~~ig~~~~i 363 (411)
..+.|++++.+.+.+.+ ..++.||++|.|++++.|. +++||++|.|+++|+|. +++||++|.||+++.|
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I 141 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL 141 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence 35677777777766666 4567899999999888885 79999999999999999 8999999999999999
Q ss_pred ecCCcCC----------cccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 364 QGNGDYN----------AKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 364 ~~~~~~~----------~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
.++..++ ...+.++||++|+||+++.| .+|+|++|++|++++|+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~ 204 (252)
T 3jqy_B 142 RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMC 204 (252)
T ss_dssp ECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred ecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCC
Confidence 8753221 22244677777777777655 6899999999999988753
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=118.46 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=82.6
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe---------eEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN---------SIIGW 353 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------s~i~~ 353 (411)
+.++.|++.++|.+++.|+++++|+++++|..++.|+.+|.|. +++||++|.|+.++.|.. ++||+
T Consensus 159 ~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGD 238 (332)
T 3fsy_A 159 PTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGK 238 (332)
T ss_dssp CTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECT
T ss_pred CCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECC
Confidence 3567777777888888888888888778888888888888875 378999999999999974 89999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEE--cCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIV--LPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i--~~~~~v~~ 403 (411)
+|.||+++.| + +.||++|+|++|++| +++.| .+|.+++.
T Consensus 239 nv~IGanAtI--g---------VtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a 280 (332)
T 3fsy_A 239 RCLLGANSGL--G---------ISLGDDCVVEAGLYVTAGTRVTMPDSNSVKA 280 (332)
T ss_dssp TCEECTTCEE--C---------SCBCSSCEECTTCEECTTCEEECTTSCEEEG
T ss_pred CCEECCCCEE--e---------eEECCCCEECCCCEECCCCEEEeCCCCEEEh
Confidence 9999999999 4 899999999999888 44443 24555544
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=114.28 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred cEECCCCEECCC-CEECCC---cEECCCcEECCCcEEEe----eEECCCCEECCCcEE----EeeEECCCCEECCCcEEe
Q 015225 297 VYIHPSAKVHPT-AKIGPN---VSISANVRVGAGVRLIS----CIVLDDVEIKENAVV----LNSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 297 ~~i~~~~~v~~~-~~i~~~---~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i----~~s~i~~~~~ig~~~~i~ 364 (411)
++|++++.|.+. +.|.++ +.||++|.|++++.|.. +.||++|.|++++.+ .+++||++|.|++++.|.
T Consensus 37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~ 116 (215)
T 2wlg_A 37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR 116 (215)
T ss_dssp EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence 445555555444 344332 55555555555555542 555555555553333 244555555555555555
Q ss_pred cCCcCCc----------ccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 365 GNGDYNA----------KLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 365 ~~~~~~~----------~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
....++. ..+.++||++++||+++.| .+|+|+++++|++++|+.
T Consensus 117 ~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~ 177 (215)
T 2wlg_A 117 NTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEP 177 (215)
T ss_dssp SCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCC
T ss_pred CCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCC
Confidence 4211110 0122444444444444433 355555556665555543
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=112.63 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=83.1
Q ss_pred cEECCCCEECCCCEECC---CcEECCCcEECCCcEE----EeeEECCCCEECCCcEEEe--------------------e
Q 015225 297 VYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRL----ISCIVLDDVEIKENAVVLN--------------------S 349 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i----~~~~i~~~~~i~~~~~i~~--------------------s 349 (411)
+.||+++.|++++.|.+ ++.||++|.|++.+.+ .+++||++|.|+++|+|.+ +
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v 138 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV 138 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence 78999999999888873 4999999999996655 5899999999999999995 3
Q ss_pred EECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 350 IIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 350 ~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+||++|.||.++.|..+ +.||++|.|+++++|... +.+++++.
T Consensus 139 ~Igd~v~IG~~~~I~~g---------v~Ig~~~vIgagsvV~~~-vp~~~i~~ 181 (215)
T 2wlg_A 139 IIGNHVWLGRNVTILKG---------VCIPNNVVVGSHTVLYKS-FKEPNCVI 181 (215)
T ss_dssp EECTTCEECTTCEECTT---------CEECSSCEECTTCEECSC-CCCCSCEE
T ss_pred EECCCcEECCCCEECCC---------CEECCCCEECCCCEEcCc-cCCCeEEE
Confidence 99999999999999998 999999999999999543 46666555
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=110.17 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=41.8
Q ss_pred ECCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe-------------------eEECCCCEECCCcEEecCCc
Q 015225 311 IGPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN-------------------SIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------s~i~~~~~ig~~~~i~~~~~ 368 (411)
++.++.||++|.|+.+|+|. ..+||++|.||.+|.|.. ++||++|.||.++.|..+
T Consensus 73 ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-- 150 (195)
T 3nz2_A 73 FGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQG-- 150 (195)
T ss_dssp CSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTT--
T ss_pred eCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCC--
Confidence 34445555555555555553 236777777777776653 366666666666666555
Q ss_pred CCcccceeEECCCCEECCCcEE
Q 015225 369 YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||++++|++|++|
T Consensus 151 -------v~IG~~~vIgagsvV 165 (195)
T 3nz2_A 151 -------VTIGARSVVAANSVV 165 (195)
T ss_dssp -------CEECTTCEECTTCEE
T ss_pred -------CEECCCCEECCCCEE
Confidence 666666666666555
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-11 Score=114.88 Aligned_cols=185 Identities=16% Similarity=0.242 Sum_probs=136.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhcc------------CCCCcEEEEecccchHHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKR------------IPNLAQIFLIGFYEEREFA 67 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~------------~~gi~~I~Iv~~~~~~~i~ 67 (411)
++.+|+|||| .||||+. ..||+|+|| .|+|++++.++.+.+ ..++.-+++.+.+..+.++
T Consensus 35 kvavvlLAGG--~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 35 KTALITPAGG--QGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp CEEEEEECCS--BCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred ceEEEEecCC--CcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 5789999999 9999966 899999999 999999999988853 1278877777777788899
Q ss_pred HHHhhhcccCCc---ceEEeeC---------------------CCCCCChHHHHHH-----HHHhhccCCCeEEEEcCCc
Q 015225 68 LYVSSISNELKV---PVRYLKE---------------------DKPHGSAGGLYYF-----RDMIMEENPSHIILLNCDV 118 (411)
Q Consensus 68 ~~~~~~~~~~~~---~i~~v~~---------------------~~~~g~~~~l~~~-----~~~i~~~~~~~~lv~~~D~ 118 (411)
+++++. +.+|. .+.+..| ..+.|+++.+... ++.+....-+++++...|.
T Consensus 110 ~~f~~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN 188 (405)
T 3oc9_A 110 NYFKEH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDN 188 (405)
T ss_dssp HHHHHT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTB
T ss_pred HHHHhC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCC
Confidence 999874 33454 3554332 2245777766543 2333333457899999999
Q ss_pred -ccCCChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEE-cCCCCceeEEeccCCC---------cccCcccceEEE
Q 015225 119 -CCSFPLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIA-DPNTKELLHYTEKPET---------FVSDLINCGVYV 186 (411)
Q Consensus 119 -i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~-d~~~~~v~~~~e~~~~---------~~~~~~~~Giyi 186 (411)
+.......++.+|.++++++++-+.+. ..+ ...|.+.. | ...+|++|.|.|.. ...+..|.++++
T Consensus 189 ~L~~~~Dp~~lg~~~~~~~d~~~kvv~k--~~~dek~Gvl~~~d-g~~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~ 265 (405)
T 3oc9_A 189 ILCKDVDPNMIGYMDLLQSEICIKIVKK--GFKEEKVGVLVKEQ-ERIKVVEYTELTDELNKQLSNGEFIYNCGHISING 265 (405)
T ss_dssp TTCCSSCHHHHHHHHHTTCSEEEEEEEC--CSTTCSCCEEEEET-TEEEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEE
T ss_pred cccccCCHHHHHHHHHcCCCEEEEEEEC--CCCCCccceEEEEC-CeeEEEEEeeCCHHHhhcCCCCceeeccceeEeee
Confidence 567777889999999999988888776 444 67787764 4 34478888886543 123345788999
Q ss_pred eCHHHHHHhh
Q 015225 187 FTPDFFTAIQ 196 (411)
Q Consensus 187 ~~~~~~~~l~ 196 (411)
|+.++++.+.
T Consensus 266 fs~~fL~~i~ 275 (405)
T 3oc9_A 266 YSTSFLEKAA 275 (405)
T ss_dssp EEHHHHHHHT
T ss_pred cCHHHHHHhh
Confidence 9999988765
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=120.86 Aligned_cols=186 Identities=17% Similarity=0.264 Sum_probs=133.5
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccCC-------C------CcEEEEecccchHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRIP-------N------LAQIFLIGFYEEREF 66 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~~-------g------i~~I~Iv~~~~~~~i 66 (411)
++.+|+|||| .||||.. ..||+|+||+ |+|++++.++.+..+. | +..+++.+.+..+.+
T Consensus 103 kvavvlLaGG--~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 103 EVAVLLMAGG--QGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp CEEEEEEEES--BCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CeEEEEEcCC--ccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 6899999999 9999954 8899999999 9999999999988741 3 788888888888889
Q ss_pred HHHHhhhcccCCc---ceEEeeCC----------------------CCCCChHHHHHH-----HHHhhccCCCeEEEEcC
Q 015225 67 ALYVSSISNELKV---PVRYLKED----------------------KPHGSAGGLYYF-----RDMIMEENPSHIILLNC 116 (411)
Q Consensus 67 ~~~~~~~~~~~~~---~i~~v~~~----------------------~~~g~~~~l~~~-----~~~i~~~~~~~~lv~~~ 116 (411)
++++++. +.+|. .+.+..|. .+.|+++.+... ++.+...+-+++.+...
T Consensus 178 ~~~~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~v 256 (486)
T 2yqc_A 178 ESFFIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCV 256 (486)
T ss_dssp HHHHHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEET
T ss_pred HHHHhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECC
Confidence 9999874 33454 33322221 255888876544 23333334688889999
Q ss_pred CcccC--CChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcCCCC--ceeEEeccCCC------------cccCc
Q 015225 117 DVCCS--FPLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADPNTK--ELLHYTEKPET------------FVSDL 179 (411)
Q Consensus 117 D~i~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~--~v~~~~e~~~~------------~~~~~ 179 (411)
|.+.. .| ..++.+|.++++++++.+.+. ..+ ...|.+.....++ +|++|.|.|.. .....
T Consensus 257 DN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k--~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~ 333 (486)
T 2yqc_A 257 DNCLVKVAD-PIFIGFAIAKKFDLATKVVRK--RDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRA 333 (486)
T ss_dssp TBTTCCTTC-HHHHHHHHHHTCSEEEEEEEC--CSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCE
T ss_pred CCceeeccC-HHHHHHHHHcCCCEEEEEEEc--CCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccc
Confidence 98753 34 457888888999988877764 333 5678776431144 58888887631 12457
Q ss_pred ccceEEEeCHHHHHH-hhh
Q 015225 180 INCGVYVFTPDFFTA-IQG 197 (411)
Q Consensus 180 ~~~Giyi~~~~~~~~-l~~ 197 (411)
.|+|+|+|+.++++. +.+
T Consensus 334 ~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 334 ANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEEEEEEEEHHHHHHHHHH
T ss_pred eeEEEEEEeHHHHHHHHHh
Confidence 799999999999887 554
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=119.02 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=71.1
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCccccee
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGIT 376 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~ 376 (411)
.+++++.|++.++|.+++.||+++.|++++.|. ++.||++|+|..++.+. ++||++|.|++++.|.++-.. ...+.+
T Consensus 180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~-~~~~~V 257 (347)
T 3r5d_A 180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSG-GGNIVI 257 (347)
T ss_dssp CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC-------CCCC
T ss_pred eccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCC-CCccce
Confidence 344555555555555555555555555555554 45558888887776654 889999999999988763111 112237
Q ss_pred EECCCCEECCCcEE-----cceEEcCCCEEcCCCC
Q 015225 377 ILGEAVTVEDEVVV-----INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 377 ~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~~ 406 (411)
+||++|+||+++.| .+|+|++|++|.++.+
T Consensus 258 ~IGdnv~IGAnAtIGVtIGd~~iIGAGSVVtkdt~ 292 (347)
T 3r5d_A 258 SVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTK 292 (347)
T ss_dssp EECTTCEECTTCEECSCBCTTCEECTTCEECTTCE
T ss_pred EECCCCEECCCCEEeeEECCCCEECCCCEECCCCE
Confidence 88888888888877 6899999999988764
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=106.20 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe-------------------eEECCCCEECCCcEEecCCcCC
Q 015225 313 PNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN-------------------SIIGWKSSLGRWARVQGNGDYN 370 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------s~i~~~~~ig~~~~i~~~~~~~ 370 (411)
.++.||+++.|+++|.|. ...||++|.|+.+|.|.+ ++||++|.||.+|.|..+
T Consensus 77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---- 152 (190)
T 3hjj_A 77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPG---- 152 (190)
T ss_dssp TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTT----
T ss_pred CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCC----
Confidence 355555666666666664 456788888888888742 466666666666666665
Q ss_pred cccceeEECCCCEECCCcEEc
Q 015225 371 AKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 371 ~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||++|+|+++++|.
T Consensus 153 -----v~IG~~~vIgagsvV~ 168 (190)
T 3hjj_A 153 -----VSIGDNAVIASGAVVT 168 (190)
T ss_dssp -----CEECTTCEECTTCEEC
T ss_pred -----CEECCCCEECCCCEEC
Confidence 6666666666666664
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-12 Score=114.81 Aligned_cols=94 Identities=22% Similarity=0.310 Sum_probs=61.8
Q ss_pred CcEECCCCEECCCCEE--CCCcEECCCcEECCCcEEEeeEECCCCEECCCcEE------------EeeEECCCCEECCCc
Q 015225 296 DVYIHPSAKVHPTAKI--GPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV------------LNSIIGWKSSLGRWA 361 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i------------~~s~i~~~~~ig~~~ 361 (411)
++.|++++.|++++.| +.+++||++|+||++|.| +++|+|+.++.. .+++||++|.||++|
T Consensus 190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I-----~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga 264 (310)
T 3f1x_A 190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKL-----YQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNA 264 (310)
T ss_dssp SCEECTTCEECSSCEEESCTTCEECTTCEECSSCEE-----ETTCEEECC--------------CCSCEECTTCEECTTC
T ss_pred CcEECCCCEECCCcEECCCCCeEECCceEEcCCCEE-----CCCCEECCCccccccccccccCCCCCCEECCCcEEcCCC
Confidence 4455555555555555 445666666666655555 444444444411 245899999999999
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCC
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVS 404 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~ 404 (411)
.|.++ ++||++|+||+|++|... |.+++++..+
T Consensus 265 ~Il~g---------v~IGd~a~IGagsvV~~d-Vp~~svv~Gn 297 (310)
T 3f1x_A 265 TILGR---------VTIGKGATVGGNIWVTEN-VPAGSRIVQR 297 (310)
T ss_dssp EEESS---------CEECTTCEECSSCEECSC-BCTTCEECCC
T ss_pred EECCC---------cEECCCCEECCCCEECCc-cCCCcEEECC
Confidence 99987 999999999999988643 5677776553
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-12 Score=109.21 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=44.5
Q ss_pred CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEE-------------------eeEECCCCEECCCcEEecCCcCCc
Q 015225 314 NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVL-------------------NSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
++.||++|.|+++|.|. ..+||++|.||.+|.|. .++||++|.||.+|.|..+
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g----- 148 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPG----- 148 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTT-----
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCC-----
Confidence 44555555555555553 24777777777777773 3357777777777777666
Q ss_pred ccceeEECCCCEECCCcEEcc
Q 015225 372 KLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~ 392 (411)
+.||++++|+++++|..
T Consensus 149 ----v~IG~~~vIgagsvV~~ 165 (199)
T 3ftt_A 149 ----VTIGEGSVIGAGSVVTK 165 (199)
T ss_dssp ----CEECTTCEECTTCEECS
T ss_pred ----CEECCCCEECCCCEECc
Confidence 77777777777766643
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=115.83 Aligned_cols=108 Identities=8% Similarity=0.087 Sum_probs=73.6
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccce
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
..+++++.|+|.++|++++.||+++.|++++.|+ ++.++.+|.|...+.+ ++.||++|.|+.++.|.+.... ...+.
T Consensus 156 ~vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~-~~~~~ 233 (332)
T 3fsy_A 156 YVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSG-GGTHV 233 (332)
T ss_dssp TCCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBCC----CCB
T ss_pred eecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCCCC-CCccc
Confidence 3456666666666666666666666666666665 4556777777655433 4888888888888888763211 11233
Q ss_pred eEECCCCEECCCcEE-----cceEEcCCCEEcCCCC
Q 015225 376 TILGEAVTVEDEVVV-----INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~~ 406 (411)
++||++|+||+++.| .+|+|++|++|.++.+
T Consensus 234 V~IGDnv~IGanAtIgVtIGd~~iIGAGSVVtkdt~ 269 (332)
T 3fsy_A 234 ISIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGTR 269 (332)
T ss_dssp CEECTTCEECTTCEECSCBCSSCEECTTCEECTTCE
T ss_pred eEECCCCEECCCCEEeeEECCCCEECCCCEECCCCE
Confidence 788888888888876 5789999999988753
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=121.43 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=43.2
Q ss_pred EECCCCEECCCcEEE--------eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCC
Q 015225 333 IVLDDVEIKENAVVL--------NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVS 404 (411)
Q Consensus 333 ~i~~~~~i~~~~~i~--------~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~ 404 (411)
+||++|.||.++.+. .++||++|.||.++.|..+ +.||+++.|++|++|... |.|++++-.+
T Consensus 374 ~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~g---------v~Ig~~~~igagsvV~~~-v~~~~~~~G~ 443 (459)
T 4fce_A 374 EIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP---------VTVANGATIGAGTTVTRD-VAENELVISR 443 (459)
T ss_dssp EECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS---------EEECTTCEECTTCEECSC-BCTTCEECCC
T ss_pred EECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCC---------cEECCCCEECCCCEEccc-cCCCCEEEec
Confidence 444455555555543 2677777777777777776 999999999999999554 5777777653
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=115.05 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEE----------------------
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV---------------------- 346 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i---------------------- 346 (411)
.++.+.+++.|++++.|+++|.|. +++|++++.|+++|+|.+++|+++|.|+.++.+
T Consensus 76 ~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I 154 (334)
T 2pig_A 76 GNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQI 154 (334)
T ss_dssp TTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEE
T ss_pred CCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEE
Confidence 467778888888888888888888 899999999999999988777666665555544
Q ss_pred ------EeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc
Q 015225 347 ------LNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 347 ------~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 392 (411)
.+|+|+++|.|+.++.|.+ ++|++++.|++++.+.+
T Consensus 155 ~~~a~I~~s~I~~g~~I~~~a~I~~----------svI~~~a~I~~~a~V~~ 196 (334)
T 2pig_A 155 YDRATVNHSRIVHQVQLYGNATITH----------AFIEHRAEVFDFALIEG 196 (334)
T ss_dssp CTTCEEESCEEETTCEECTTCEEES----------EEECTTCEECTTCEEEC
T ss_pred CCCCEEeccEEcCCCEEcCCeEEeC----------cEEcCCCEECCCcEECC
Confidence 3444445555555555542 77777777777776643
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=121.60 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=86.1
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEe--------eEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--------SIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--------s~i~~~~~ig~~ 360 (411)
+.+.+++++.+++++.||.++.|. +++||++++|+..+.|.+++||++|.||++|.+-| ++||++|.||.+
T Consensus 345 ~~~~i~~~~~i~~~v~IG~~v~ik-~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~ 423 (501)
T 3st8_A 345 PFTYLRPGTALGADGKLGAFVEVK-NSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSD 423 (501)
T ss_dssp SSEEECTTCEECTTCEEEETEEEE-SCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTT
T ss_pred CceeecCCcEEccccccCCeEEEc-cceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCC
Confidence 345555566666666666666665 78999999999999999999999999999999854 899999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCC
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSV 405 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~ 405 (411)
+.|..+ +.||++|.|++|++|... |.|++.+-...
T Consensus 424 ~~l~~~---------v~Ig~~~~i~ags~v~~d-vp~~~l~~~~~ 458 (501)
T 3st8_A 424 TMFVAP---------VTIGDGAYTGAGTVVRED-VPPGALAVSAG 458 (501)
T ss_dssp CEEESS---------EEECTTCEECTTCEECSC-BCTTCEECCCC
T ss_pred CEEcCC---------cEECCCCEECCCCEECcc-cCCCCeEEecc
Confidence 999998 999999999999999554 46676554443
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=109.89 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=39.4
Q ss_pred CcEEcCCcEECCCCEEC--CCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE---eeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVH--PTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL---NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~--~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---~s~i~~~~~ig~~~~i~ 364 (411)
+..+++++.||++++|+ .+++|+++++||++|.|+++++|.. ..... +++||++|.||+++.|.
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~-----------~~~~~~~r~~~IGd~v~IGaga~Il 232 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGG-----------TGKSSGDRHPKIRQGVLIGAGAKIL 232 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC----------------CCCSCEECTTCEECTTCEEE
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcC-----------CcccCCCcCCEECCCCEECCCCEEC
Confidence 34455555555555554 3444444444444444444444432 11111 24555566666665555
Q ss_pred cCCcCCcccceeEECCCCEECCCcEE
Q 015225 365 GNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 365 ~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++ ++||++|+||+|++|
T Consensus 233 ~g---------v~IG~~a~IGagsvV 249 (287)
T 3mc4_A 233 GN---------IQVGQCSKIAAGSVV 249 (287)
T ss_dssp SS---------CEECTTCEECTTCEE
T ss_pred CC---------cEECCCCEECCCCEE
Confidence 55 555555555555555
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=104.98 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=49.1
Q ss_pred CCcEECCCcEECCCcEEEe---eEECCCCEECCCcEEE-------------------eeEECCCCEECCCcEEecCCcCC
Q 015225 313 PNVSISANVRVGAGVRLIS---CIVLDDVEIKENAVVL-------------------NSIIGWKSSLGRWARVQGNGDYN 370 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~~---~~i~~~~~i~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~~~ 370 (411)
.++.||+++.|+.+|.|.+ .+||++|.|+.+|+|. .++||++|.||.+|.|..+
T Consensus 75 ~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---- 150 (188)
T 3srt_A 75 YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPG---- 150 (188)
T ss_dssp TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTT----
T ss_pred CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCC----
Confidence 3566666666666666653 3788888888888882 4667777777777777666
Q ss_pred cccceeEECCCCEECCCcEEcc
Q 015225 371 AKLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 371 ~~~~~~~i~~~~~i~~~~~v~~ 392 (411)
+.||++++|+++++|..
T Consensus 151 -----v~IG~~~vIgagsvV~~ 167 (188)
T 3srt_A 151 -----ITIGDNVVIGAGSVVTK 167 (188)
T ss_dssp -----CEECSSEEECTTCEECS
T ss_pred -----cEECCCCEECCCCEECc
Confidence 67777777776666643
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=106.12 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=50.3
Q ss_pred CcEECCCcEECCCcEE---EeeEECCCCEECCCcEEE-------------------eeEECCCCEECCCcEEecCCcCCc
Q 015225 314 NVSISANVRVGAGVRL---ISCIVLDDVEIKENAVVL-------------------NSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
++.||+++.|+.+|+| .+.+||++|.|+.+|.|. .++||++|.||.+|.|..+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~g----- 148 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPG----- 148 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTT-----
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCC-----
Confidence 4444444444444444 245666666666666663 4677888888888877776
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.||++++|++|++|... |.+++++-
T Consensus 149 ----v~IG~~~vIgagsvV~~~-vp~~~vv~ 174 (185)
T 2p2o_A 149 ----VTIGDNAVIASGAVVTKD-VPANAVVG 174 (185)
T ss_dssp ----CEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred ----CEECCCCEECCCCEECCC-CCCCcEEE
Confidence 788888888877777544 55555544
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=104.66 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=54.5
Q ss_pred CCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEE-------------------eeEECCCCEECCCcEEecCCcCC
Q 015225 313 PNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVL-------------------NSIIGWKSSLGRWARVQGNGDYN 370 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~~~ 370 (411)
.++.||+++.|+.+|.|. ..+||++|.|+.+|.|. .++||++|.||.++.|..+
T Consensus 71 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~g---- 146 (182)
T 1ocx_A 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---- 146 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT----
T ss_pred CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCC----
Confidence 345555555555555553 45777777777777773 4678888888888887777
Q ss_pred cccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 371 AKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 371 ~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.||++++|++|++|... |.+++++-
T Consensus 147 -----v~IG~~~vIgagsvV~~d-ip~~~vv~ 172 (182)
T 1ocx_A 147 -----VTIGDNVVVASGAVVTKD-VPDNVVVG 172 (182)
T ss_dssp -----CEECTTCEECTTCEECSC-BCSSEEEE
T ss_pred -----cEECCCCEECCCCEECCc-CCCCcEEE
Confidence 788888888887777544 55665554
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=110.32 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=44.5
Q ss_pred CCcEEcCCcEEC--CCCEECCCCEECCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEE-eeEECCCCEECCCcE
Q 015225 289 TSATIAGDVYIH--PSAKVHPTAKIGPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWAR 362 (411)
Q Consensus 289 ~~~~~~~~~~i~--~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~ 362 (411)
+++.|+++++|+ .+++|+++|+|+.++.|+.+|.|+...... +++||++|.||.+++|. +++||++|.||+++.
T Consensus 169 p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsv 248 (287)
T 3mc4_A 169 PAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSV 248 (287)
T ss_dssp TTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEECTTCE
T ss_pred CCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEECCCCE
Confidence 355666666665 556666666666666666666665543222 25556666666666666 566666666666666
Q ss_pred EecC
Q 015225 363 VQGN 366 (411)
Q Consensus 363 i~~~ 366 (411)
|..+
T Consensus 249 V~kd 252 (287)
T 3mc4_A 249 VLKS 252 (287)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 6553
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=116.33 Aligned_cols=138 Identities=18% Similarity=0.136 Sum_probs=75.1
Q ss_pred EEeecceeeecCC--ccchhhcchHHHhhhh--hc-----CccccccCCCCCCcEEcCCcEECCCCEECCCCEECCC-cE
Q 015225 247 TYETMDFWEQIKT--PGMSLKCSSLYLALFK--IT-----SPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPN-VS 316 (411)
Q Consensus 247 ~~~~~~~~~~I~t--~~d~~~a~~~~l~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~-~~ 316 (411)
.+....+|.+.+. |.+|......+..+.. .. .|..........+.++.+++.|++++.|+++++|+++ ++
T Consensus 165 g~l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~ 244 (387)
T 2rij_A 165 GLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASY 244 (387)
T ss_dssp HHSCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCE
T ss_pred ccCceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeE
Confidence 3344567888777 5566666555543221 00 1111110001125666666677777777777777764 77
Q ss_pred ECCCcE-ECCCcEEE-----eeEECCCCEECCCcEEEe---------eEECCCCEECCCcEEecCCcCCcccceeEECCC
Q 015225 317 ISANVR-VGAGVRLI-----SCIVLDDVEIKENAVVLN---------SIIGWKSSLGRWARVQGNGDYNAKLGITILGEA 381 (411)
Q Consensus 317 ig~~~~-i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~ 381 (411)
|+.++. ||+ |.|. +++||++|.|+.++.|.+ ++||++|.||.++. .+ +.||++
T Consensus 245 Ig~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~G---------V~IGdg 312 (387)
T 2rij_A 245 VNFNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TG---------IPLGDN 312 (387)
T ss_dssp ECTTCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--EC---------SCBCTT
T ss_pred ECCCcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CC---------cEECCC
Confidence 777776 666 6653 344555555555554221 45666666666655 22 666666
Q ss_pred CEECCCcEE-cceEEc
Q 015225 382 VTVEDEVVV-INSIVL 396 (411)
Q Consensus 382 ~~i~~~~~v-~~~~i~ 396 (411)
|+|++|++| +++.++
T Consensus 313 avIGAGsVVt~dv~i~ 328 (387)
T 2rij_A 313 CIVDAGIAVLEGTKFL 328 (387)
T ss_dssp CEECTTCEECTTCEEE
T ss_pred CEECCCCEECCCceee
Confidence 666666666 344443
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=105.76 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=49.4
Q ss_pred cEEcCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEe-------------------eEECCCCEECCCcEEE-e
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLIS-------------------CIVLDDVEIKENAVVL-N 348 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~-------------------~~i~~~~~i~~~~~i~-~ 348 (411)
+.++.++.||+++.|+++|+|. ..+.||++|.||++|.|.+ ++||++|.||.+|+|. +
T Consensus 71 ~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g 150 (195)
T 3nz2_A 71 CEFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQG 150 (195)
T ss_dssp ESCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTT
T ss_pred EEeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCC
Confidence 3445567788888888888884 4568899999999888864 3566666666666554 4
Q ss_pred eEECCCCEECCCcEEec
Q 015225 349 SIIGWKSSLGRWARVQG 365 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~ 365 (411)
++||++++||+++.+..
T Consensus 151 v~IG~~~vIgagsvV~~ 167 (195)
T 3nz2_A 151 VTIGARSVVAANSVVNQ 167 (195)
T ss_dssp CEECTTCEECTTCEECS
T ss_pred CEECCCCEECCCCEEcc
Confidence 55555555555555444
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-11 Score=103.94 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=47.6
Q ss_pred CCcEECCCcEECCCcEEEe---eEECCCCEECCCcEEE-------------------eeEECCCCEECCCcEEecCCcCC
Q 015225 313 PNVSISANVRVGAGVRLIS---CIVLDDVEIKENAVVL-------------------NSIIGWKSSLGRWARVQGNGDYN 370 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~~---~~i~~~~~i~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~~~ 370 (411)
.++.||+++.|+.+|.|.+ .+||++|.|+.+|.|. .++||++|.||.+|.|..+
T Consensus 74 ~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~g---- 149 (203)
T 1krr_A 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---- 149 (203)
T ss_dssp TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTT----
T ss_pred CCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCC----
Confidence 4455555555555555543 5666666666666654 3567777777777777766
Q ss_pred cccceeEECCCCEECCCcEEcceEEcCCCE
Q 015225 371 AKLGITILGEAVTVEDEVVVINSIVLPNKV 400 (411)
Q Consensus 371 ~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~ 400 (411)
+.||++|+|++|++|... |.++++
T Consensus 150 -----v~IG~~~vIgagsvV~~d-vp~~~v 173 (203)
T 1krr_A 150 -----VTIGDNSVIGAGSIVTKD-IPPNVV 173 (203)
T ss_dssp -----CEECTTCEECTTCEECSC-BCTTEE
T ss_pred -----eEECCCCEECCCCEECCC-cCCCcE
Confidence 777777777777766433 344443
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.2e-11 Score=109.63 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=54.4
Q ss_pred EcCCcEECCCCEECCCCEE--CCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCC----cEEecC
Q 015225 293 IAGDVYIHPSAKVHPTAKI--GPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRW----ARVQGN 366 (411)
Q Consensus 293 ~~~~~~i~~~~~v~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~----~~i~~~ 366 (411)
...++.|++++.|++++.| +.+++||++|+||++|.| +++|+||.+ +.+++++.++.+ +.|+++
T Consensus 160 ~~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I-----~~~vtIG~~-----~~ig~~~~i~~~~~~~~~IGd~ 229 (313)
T 3q1x_A 160 SYTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRI-----YQSVTLGAM-----HFQEEGGVIKRGTKRHPTVGDY 229 (313)
T ss_dssp HHHCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEE-----CTTCEEECC-----CCCCTTCCCCCCSSCSCEECSS
T ss_pred ecCCeEECCCCEECCCEEECCCCceEECCCcEECCCCEE-----CCCcEEeCC-----cEECCCceEcCCCccCCEECCC
Confidence 3456677777777777766 344555555555555554 222222222 233333333333 244444
Q ss_pred CcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
|.||.+|+|..+++| .+|+||+|++|.+++|+..
T Consensus 230 ---------v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs 264 (313)
T 3q1x_A 230 ---------VTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQ 264 (313)
T ss_dssp ---------CEECTTCEEESSCEECSSEEECTTCEECSCBCSSE
T ss_pred ---------CEECCCCEECCCcEECCCCEECCCCEECCCcCCCC
Confidence 555555555555555 5788888888888887654
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=104.91 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=24.0
Q ss_pred CCeEE--EEcCCcccCCChHHHHHHHHhcC
Q 015225 108 PSHII--LLNCDVCCSFPLPDLLEAHKRYG 135 (411)
Q Consensus 108 ~~~~l--v~~~D~i~~~~l~~~l~~~~~~~ 135 (411)
.+++| ++++|.+...+|.+.+.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48888 88999999999999999987654
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=106.44 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=57.4
Q ss_pred EEcCCcEECCCCEECCCCEEC-CCcEECCCcEECCCcEEEe-eEECCCCEECCCcEE-----------------------
Q 015225 292 TIAGDVYIHPSAKVHPTAKIG-PNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVV----------------------- 346 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~-~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i----------------------- 346 (411)
...+++.+++++.||+++.|. .+..+.++|+|++++.|.+ ++||++|.|+.++++
T Consensus 25 ~~~~~~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~ 104 (220)
T 4hur_A 25 QFIKPTITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGW 104 (220)
T ss_dssp EESGGGCCSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTG
T ss_pred EEecceEECCCEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccc
Confidence 334455555555565555551 1222223444444444432 445666666666664
Q ss_pred -------------EeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 347 -------------LNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 347 -------------~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
.+++||++|.||.+|.|..+ +.||++|.|+++++|... |.+++++
T Consensus 105 ~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~g---------v~IG~gavIgagsvV~~d-Vp~~~vv 162 (220)
T 4hur_A 105 EKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPG---------VKIGDGAIIAAEAVVTKN-VAPYSIV 162 (220)
T ss_dssp GGGCCCGGGSCCCCCEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred cccccccccccccCCeEECCCcEECCCCEEeCC---------CEECCCCEEcCCCEEccc-CCCCcEE
Confidence 24678888888888887777 777888877777777433 3444443
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-11 Score=108.15 Aligned_cols=77 Identities=29% Similarity=0.310 Sum_probs=62.0
Q ss_pred CcEEcCCcEECCCCEE--CCCCEECCCcEECCCcEECCCcEEEe-e-----------------EECCCCEECCCcEEE-e
Q 015225 290 SATIAGDVYIHPSAKV--HPTAKIGPNVSISANVRVGAGVRLIS-C-----------------IVLDDVEIKENAVVL-N 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v--~~~~~i~~~~~ig~~~~i~~~~~i~~-~-----------------~i~~~~~i~~~~~i~-~ 348 (411)
+..+++++.||++++| +.+++|+++++||++|.|+++|+|.. + +||++|.||.+|+|. +
T Consensus 190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~g 269 (310)
T 3f1x_A 190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGR 269 (310)
T ss_dssp SCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEESS
T ss_pred CcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCC
Confidence 5677888888888888 67888888888888888888888873 3 688888888888888 7
Q ss_pred eEECCCCEECCCcEEecC
Q 015225 349 SIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~ 366 (411)
++||++|.||+++.|..+
T Consensus 270 v~IGd~a~IGagsvV~~d 287 (310)
T 3f1x_A 270 VTIGKGATVGGNIWVTEN 287 (310)
T ss_dssp CEECTTCEECSSCEECSC
T ss_pred cEECCCCEECCCCEECCc
Confidence 888888888888777764
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.02 Aligned_cols=76 Identities=22% Similarity=0.191 Sum_probs=38.1
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEe---------eEECCCCEECCCcEEE-eeEECCCCEE
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLIS---------CIVLDDVEIKENAVVL-NSIIGWKSSL 357 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~s~i~~~~~i 357 (411)
+..+++++.||++++|++ +++|+++++||++|.|+++++|.+ ++||++|.||.+++|. +++||+++.|
T Consensus 137 g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~I 216 (267)
T 1ssq_A 137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKI 216 (267)
T ss_dssp SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred ceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEE
Confidence 445566666666666663 455555555555555555555543 2444444444444443 3444444444
Q ss_pred CCCcEEec
Q 015225 358 GRWARVQG 365 (411)
Q Consensus 358 g~~~~i~~ 365 (411)
|+++.|..
T Consensus 217 GagsvV~~ 224 (267)
T 1ssq_A 217 GANSVVLN 224 (267)
T ss_dssp CTTCEECS
T ss_pred CCCCEEcc
Confidence 44444433
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-10 Score=104.77 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=24.4
Q ss_pred CCeEE--EEcCCcccCCChHHHHHHHHhcC
Q 015225 108 PSHII--LLNCDVCCSFPLPDLLEAHKRYG 135 (411)
Q Consensus 108 ~~~~l--v~~~D~i~~~~l~~~l~~~~~~~ 135 (411)
.+++| ++++|.+...+|.+.+.+|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 58899 99999999999999999987654
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=118.23 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=74.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCC---------------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWK--------------- 354 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~--------------- 354 (411)
.+.+.+.+.|++++.| +++.| .+++||++|+|+. |.|.+++||++|.||++|.|.++++..+
T Consensus 308 ~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 384 (451)
T 1yp2_A 308 SAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK 384 (451)
T ss_dssp SSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTT
T ss_pred CCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCccccccccccccc
Confidence 3445556666666666 56777 4688999999986 8888999999999999999998877777
Q ss_pred ----CEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 355 ----SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 355 ----~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||+++.+.+ ++||++|+||++++|.
T Consensus 385 g~~~~~Ig~~~~i~~----------~~Ig~~~~IG~~~~i~ 415 (451)
T 1yp2_A 385 GSVPIGIGKNCHIKR----------AIIDKNARIGDNVKII 415 (451)
T ss_dssp TCCCSEECTTCEEES----------EEECTTCEECTTCEEC
T ss_pred CceeEEECCCCEEec----------cEeCCCcEECCCCEEe
Confidence 99999999977 8999999999999884
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=104.32 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=42.4
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcE---EEeeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAV---VLNSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~s~i~~~~~ig~~~~i~ 364 (411)
+..+++++.||++++|++ +++|+++++||++|.|+++++|.+ ... ..+++||++|.||.++.|.
T Consensus 157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~-----------~~~~~~~~~~~IGd~v~IGaga~Il 225 (289)
T 1t3d_A 157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGG-----------TGKSGGDRHPKIREGVMIGAGAKIL 225 (289)
T ss_dssp SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEEC-----------CSSSCSSCSCEECTTCEECTTCEEE
T ss_pred ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECC-----------CccccCCCCeEECCCeEECCCCEEe
Confidence 344555555555555553 344444444444444444444432 110 1135666666666666666
Q ss_pred cCCcCCcccceeEECCCCEECCCcEE
Q 015225 365 GNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 365 ~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++ +.||++++||+|++|
T Consensus 226 gg---------v~IG~~a~IGagsvV 242 (289)
T 1t3d_A 226 GN---------IEVGRGAKIGAGSVV 242 (289)
T ss_dssp SS---------CEECTTCEECTTCEE
T ss_pred cC---------cEECCCCEECCCCEE
Confidence 65 666666666666666
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=97.79 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=54.4
Q ss_pred cCCcEECCCCEECCCCEECC--CcEECCCcEECCCcEEEe-------------------eEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLIS-------------------CIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~-------------------~~i~~~~~i~~~~~i~-~s~i 351 (411)
+.++.||++++|+++|+|.. ++.||++|.||++|.|.+ ++||++|.||.+|+|. +++|
T Consensus 76 g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~I 155 (190)
T 3hjj_A 76 GYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSI 155 (190)
T ss_dssp STTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEE
T ss_pred CCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEE
Confidence 55778888888888888874 678999999999999943 4677777777777766 6666
Q ss_pred CCCCEECCCcEEec
Q 015225 352 GWKSSLGRWARVQG 365 (411)
Q Consensus 352 ~~~~~ig~~~~i~~ 365 (411)
|++|+||+++.+..
T Consensus 156 G~~~vIgagsvV~~ 169 (190)
T 3hjj_A 156 GDNAVIASGAVVTK 169 (190)
T ss_dssp CTTCEECTTCEECS
T ss_pred CCCCEECCCCEECc
Confidence 66666666666655
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-10 Score=97.23 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=54.5
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEE-------------------eeEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLI-------------------SCIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~-~s~i 351 (411)
+.++.||+++.|+++|+|. +.+.||++|.||++|.|. +++||++|.||.+|+|. +++|
T Consensus 72 g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~I 151 (199)
T 3ftt_A 72 GWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTI 151 (199)
T ss_dssp STTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEE
T ss_pred cCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEE
Confidence 5677888888888888884 458999999999999994 34677777777777766 6666
Q ss_pred CCCCEECCCcEEecC
Q 015225 352 GWKSSLGRWARVQGN 366 (411)
Q Consensus 352 ~~~~~ig~~~~i~~~ 366 (411)
|+++.||+++.|..+
T Consensus 152 G~~~vIgagsvV~~d 166 (199)
T 3ftt_A 152 GEGSVIGAGSVVTKD 166 (199)
T ss_dssp CTTCEECTTCEECSC
T ss_pred CCCCEECCCCEECcc
Confidence 666666666666553
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=97.58 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=54.6
Q ss_pred cCCcEECCCCEECCCCEECC--CcEECCCcEECCCcEE-------------------EeeEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRL-------------------ISCIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i-------------------~~~~i~~~~~i~~~~~i~-~s~i 351 (411)
+.++.||+++.|+++|+|.. .+.||++|.||++|.| .+++||++|.||.+|+|. +++|
T Consensus 74 g~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~I 153 (188)
T 3srt_A 74 GYNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITI 153 (188)
T ss_dssp STTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEE
T ss_pred CCCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEE
Confidence 34677888888888888864 5589999999999999 356777777777777776 6666
Q ss_pred CCCCEECCCcEEecC
Q 015225 352 GWKSSLGRWARVQGN 366 (411)
Q Consensus 352 ~~~~~ig~~~~i~~~ 366 (411)
|++++||+++.|..+
T Consensus 154 G~~~vIgagsvV~~d 168 (188)
T 3srt_A 154 GDNVVIGAGSVVTKD 168 (188)
T ss_dssp CSSEEECTTCEECSC
T ss_pred CCCCEECCCCEECcc
Confidence 766666666666653
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=98.27 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=47.5
Q ss_pred cCCcEECCCCEECCCCEECC--CcEECCCcEECCCcEEEe-------------------eEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLIS-------------------CIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~-------------------~~i~~~~~i~~~~~i~-~s~i 351 (411)
+.++.||+++.|+++|+|.. .+.||++|.||++|.|.. ++||++|.||.+|+|. +++|
T Consensus 73 g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I 152 (203)
T 1krr_A 73 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTI 152 (203)
T ss_dssp STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEE
Confidence 55677788888877777763 478999999999998852 4566666666655554 4555
Q ss_pred CCCCEECCCcEEec
Q 015225 352 GWKSSLGRWARVQG 365 (411)
Q Consensus 352 ~~~~~ig~~~~i~~ 365 (411)
|++++||+++.|..
T Consensus 153 G~~~vIgagsvV~~ 166 (203)
T 1krr_A 153 GDNSVIGAGSIVTK 166 (203)
T ss_dssp CTTCEECTTCEECS
T ss_pred CCCCEECCCCEECC
Confidence 55555555544443
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-10 Score=94.43 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=53.6
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEE-------------------eeEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLI-------------------SCIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~-~s~i 351 (411)
..++.||+++.|+++++|. +++.||++|.|+++|.|. +++||++|.||.+|+|. +++|
T Consensus 70 g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~I 149 (182)
T 1ocx_A 70 GYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI 149 (182)
T ss_dssp STTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred CCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEE
Confidence 4567788888888888884 578999999999999994 46777777777777765 5666
Q ss_pred CCCCEECCCcEEec
Q 015225 352 GWKSSLGRWARVQG 365 (411)
Q Consensus 352 ~~~~~ig~~~~i~~ 365 (411)
|++++||+++.|..
T Consensus 150 G~~~vIgagsvV~~ 163 (182)
T 1ocx_A 150 GDNVVVASGAVVTK 163 (182)
T ss_dssp CTTCEECTTCEECS
T ss_pred CCCCEECCCCEECC
Confidence 66666666655554
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-10 Score=96.34 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=55.6
Q ss_pred EcCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEE-------------------eeEECCCCEECCCcEEE-eeE
Q 015225 293 IAGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLI-------------------SCIVLDDVEIKENAVVL-NSI 350 (411)
Q Consensus 293 ~~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~-~s~ 350 (411)
+..++.||+++.|.++++|. +++.||++|.|+++|.|. +++||++|.||.+|+|. +++
T Consensus 71 ~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~ 150 (185)
T 2p2o_A 71 YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVT 150 (185)
T ss_dssp CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCE
T ss_pred ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCE
Confidence 45677888888888888884 578999999999999994 46777777777777766 566
Q ss_pred ECCCCEECCCcEEec
Q 015225 351 IGWKSSLGRWARVQG 365 (411)
Q Consensus 351 i~~~~~ig~~~~i~~ 365 (411)
||++++||+++.|..
T Consensus 151 IG~~~vIgagsvV~~ 165 (185)
T 2p2o_A 151 IGDNAVIASGAVVTK 165 (185)
T ss_dssp ECTTCEECTTCEECS
T ss_pred ECCCCEECCCCEECC
Confidence 666666666655554
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=100.64 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=15.7
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
++||++|+||.+++| .+|+|++|++|.+++|+
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~ 158 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAP 158 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCT
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCC
Confidence 444444444444433 34555555555555544
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=106.13 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=66.7
Q ss_pred EECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCE
Q 015225 304 KVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVT 383 (411)
Q Consensus 304 ~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~ 383 (411)
.+..++.+.+++.++++. ++.++.+.++.||++|+| +++.|.+|+||++|.||++|.|.+ |+|++++.
T Consensus 298 ~i~~~~~i~~~~~i~~~~-~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~----------~~i~~~~~ 365 (420)
T 3brk_X 298 PIWTYAEITPPAKFVHDD-EDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLEN----------AVVLPSVK 365 (420)
T ss_dssp CCCCCCCCCCCCEEECBC-SSCBCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEE----------EEECTTCE
T ss_pred ceeeccccCCCcEEeccc-ccCCcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcc----------eEEcCCCE
Confidence 333334444444444331 344888889999999999 899999999999999999999987 99999999
Q ss_pred ECCCcEEcceEEcCCCEEcCC
Q 015225 384 VEDEVVVINSIVLPNKVLNVS 404 (411)
Q Consensus 384 i~~~~~v~~~~i~~~~~v~~~ 404 (411)
|++++.|.+|+|+.++.|..+
T Consensus 366 i~~~~~i~~~~ig~~~~i~~~ 386 (420)
T 3brk_X 366 IGRHAQLSNVVIDHGVVIPEG 386 (420)
T ss_dssp ECTTCEEEEEEECTTCEECTT
T ss_pred ECCCCEEeceEECCCCEECCC
Confidence 999998855655555555443
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-10 Score=104.95 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCEECCCCEECCCcEECCCcEECCC-cEEE-eeE-ECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 302 SAKVHPTAKIGPNVSISANVRVGAG-VRLI-SCI-VLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 302 ~~~v~~~~~i~~~~~ig~~~~i~~~-~~i~-~~~-i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
++.|++++.|++++.||++|.|+++ +.|. ++. ||+ |.|+. .|. +++||++|.|+.++.|.+.- .....+.++
T Consensus 217 gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l-~g~~~~~Vv 292 (387)
T 2rij_A 217 NTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVL-SGTSGNAIS 292 (387)
T ss_dssp TCEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECS--EECTTCEECTTCEECTTCEECCBC-SSTTCCBCE
T ss_pred CEEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEee--EECCCCEECCCCEECCCceEccee-cCCCccCeE
Confidence 4444444444445555555555553 4443 233 455 55542 444 45677777777776543310 011122378
Q ss_pred ECCCCEECCCcE----E-cceEEcCCCEEcCCCCC
Q 015225 378 LGEAVTVEDEVV----V-INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 378 i~~~~~i~~~~~----v-~~~~i~~~~~v~~~~~~ 407 (411)
||++|+||+++. | .+|+|++|++|.++++.
T Consensus 293 IGdnv~IGagAv~GV~IGdgavIGAGsVVt~dv~i 327 (387)
T 2rij_A 293 VGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKF 327 (387)
T ss_dssp ECTTCEECTTCEECSCBCTTCEECTTCEECTTCEE
T ss_pred EeCCCEECCCCcCCcEECCCCEECCCCEECCCcee
Confidence 888888888765 4 57888889999888764
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=93.54 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=27.3
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+++||++|.||.++.|.++ +.||+++.|+++++|... +.|++++
T Consensus 118 ~v~Igd~v~IG~~a~I~~g---------v~IG~~~~IgagsvV~~d-v~~~~~~ 161 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPG---------VKIGDGAIIAAEAVVTKN-VAPYSIV 161 (219)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CcEECCCeEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCeEE
Confidence 5667777777777777666 667777777666666432 3444443
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=93.75 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=30.5
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+++||++|.||.+|.|.++ +.||++|.|+++++|... |.|++++
T Consensus 111 ~v~IG~~v~IG~~a~I~~g---------v~IG~~~iIgagsvV~~d-Vp~~~vv 154 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPG---------VKIGHGAIIASRSVVTKD-VAPYEVV 154 (212)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEEccc-cCCCcEE
Confidence 5677788888887777777 777777777777777433 3444444
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-09 Score=91.92 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=49.0
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEEe-----e---EECCCCEECCC----------cEEE-eeEECCCCEECCCcEEec
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLIS-----C---IVLDDVEIKEN----------AVVL-NSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~~-----~---~i~~~~~i~~~----------~~i~-~s~i~~~~~ig~~~~i~~ 365 (411)
+.+++.+++.++||++|.|+++++|.. . ..+.++.++++ +.+. +++||++|.||.++.|.+
T Consensus 51 i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~ 130 (209)
T 1mr7_A 51 LYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMP 130 (209)
T ss_dssp ESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECT
T ss_pred EeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCCCEEcCCCEEcC
Confidence 333444455567777777777776621 1 11122223332 2222 567777777777777777
Q ss_pred CCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 366 NGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 366 ~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+ +.||+++.|+++++|... +.+++++
T Consensus 131 g---------v~Ig~~~~Igags~V~~~-v~~~~i~ 156 (209)
T 1mr7_A 131 G---------VKIGDGAIVAANSVVVKD-IAPYMLA 156 (209)
T ss_dssp T---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred C---------CEECCCCEEcCCCEEcCC-CCCCeEE
Confidence 6 777777777777777433 3444443
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=87.92 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCcEECCCCEECC--------CCEE--------CCCcEECCCcEECCCcEEE--ee--EECC---------------CCE
Q 015225 295 GDVYIHPSAKVHP--------TAKI--------GPNVSISANVRVGAGVRLI--SC--IVLD---------------DVE 339 (411)
Q Consensus 295 ~~~~i~~~~~v~~--------~~~i--------~~~~~ig~~~~i~~~~~i~--~~--~i~~---------------~~~ 339 (411)
+++.||+++.+.+ ++++ .+.+.||++|.|+++|+|. .. ...+ ++.
T Consensus 21 ~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~ 100 (212)
T 1xat_A 21 PNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAG 100 (212)
T ss_dssp TTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGG
T ss_pred CCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccc
Confidence 4566666666664 3554 2578899999999998873 10 1111 133
Q ss_pred ECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 340 IKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 340 i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+++++.+. .++||++|.||.+|.|..+ +.||++|.|+++++|... |.|++++
T Consensus 101 i~~~~~~~~~v~IG~~v~IG~~a~I~~g---------v~Ig~~~~IgagsvV~~~-vp~~~~~ 153 (212)
T 1xat_A 101 AVNGYQPAGDTLIGHEVWIGTEAMFMPG---------VRVGHGAIIGSRALVTGD-VEPYAIV 153 (212)
T ss_dssp CCCCCCCCCCEEECTTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred cccCceecCCeEECCCCEECCCCEEeCC---------CEECCCCEECCCCEEccc-CCCCcEE
Confidence 44555554 5788888888888888877 888888888888888443 4555544
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=89.43 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=22.1
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
+.||.++.|..++.| .+|+|++|++|.+++|+..
T Consensus 125 v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~ 159 (219)
T 4e8l_A 125 VWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYS 159 (219)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred eEECCCCEEcCCCEECCCCEECCCCEEcccCCCCe
Confidence 444444444444444 5789999999999988753
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.8e-08 Score=83.91 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=23.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
+.||.++.|..++.| .+|+|++|++|++++|+..
T Consensus 117 v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~ 151 (212)
T 1xat_A 117 VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYA 151 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEcccCCCCc
Confidence 444444555555555 5788999999999887653
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=83.31 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=18.6
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEcCCCCCc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~ 408 (411)
|.||.++.|..++.| .+|+|++|++|.+++|+.
T Consensus 118 v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~ 151 (212)
T 3eev_A 118 VWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPY 151 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTT
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEccccCCC
Confidence 444444444444444 456666666666666654
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-06 Score=82.13 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=116.5
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
.++.+|+|||| .||||+- ..||.++|+. ++++++..++++..+ ..+.-++.......+.++++++++ .
T Consensus 126 ~kvavvlLaGG--lGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~-~ 199 (528)
T 3r3i_A 126 NKLVVVKLNGG--LGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY-N 199 (528)
T ss_dssp TTEEEEEECCC--BCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG-T
T ss_pred CceEEEEeCCC--CccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc-C
Confidence 46789999999 9999966 7899999996 889999999988764 135545555556667788888874 3
Q ss_pred cCCcceEEeeCC---------------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcCCcccCCC
Q 015225 76 ELKVPVRYLKED---------------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCCSFP 123 (411)
Q Consensus 76 ~~~~~i~~v~~~---------------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~~~~ 123 (411)
.++.++.+..|. .+.|.++.... .++.+...+-+++.+...|.+....
T Consensus 200 ~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~v 279 (528)
T 3r3i_A 200 HCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATV 279 (528)
T ss_dssp TSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCC
T ss_pred ccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCccccc
Confidence 345455443321 12344432221 2344434456899999999985332
Q ss_pred hHHHHHHHHhc----CCeeEEEEEecCccccc-ceeEEEEcCCCCceeEEeccCCC--------cccCcccceEEEeCHH
Q 015225 124 LPDLLEAHKRY----GGMGTMLVIKVSAESAH-QFGELIADPNTKELLHYTEKPET--------FVSDLINCGVYVFTPD 190 (411)
Q Consensus 124 l~~~l~~~~~~----~~~~~~~~~~~~~~~~~-~~g~v~~d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~ 190 (411)
-..++..+.+. ++++.+-+++. ..+. .-|.+..-...-++++|.+-|.. ....+.|+...+|+-+
T Consensus 280 Dp~~Lg~~~~~~~~~~~d~~~kVv~K--t~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~ 357 (528)
T 3r3i_A 280 DLYILNHLMNPPNGKRCEFVMEVTNK--TRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLA 357 (528)
T ss_dssp CHHHHHHHSSCSSSCCCSEEEEECCC--CTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHH
T ss_pred CHHHHHHHHhcccccCCcEEEEEeEc--cccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHH
Confidence 23455666555 66765544433 3332 23554432022346666554321 1234578999999998
Q ss_pred HHHHhhhh
Q 015225 191 FFTAIQGV 198 (411)
Q Consensus 191 ~~~~l~~~ 198 (411)
.++.+.+.
T Consensus 358 ~L~~v~~~ 365 (528)
T 3r3i_A 358 AVKRLQEQ 365 (528)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 87665543
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-07 Score=80.57 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=22.8
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
+.||.++.|..++.| .+|+|++|++|.+++|+..
T Consensus 120 v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~ 154 (209)
T 1mr7_A 120 VWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYM 154 (209)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred CEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCe
Confidence 444444444444455 5799999999999998753
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00081 Score=65.15 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=110.8
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCccc-CCcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL-AGQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
+++.+|.|||| .||||+- ..||.++|+ .++++++..++++... ..+.=++.......+..++++++. +
T Consensus 75 ~kvavvlLaGG--lGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~-~ 148 (484)
T 3gue_A 75 RQAVVLKLNGG--LGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKY-P 148 (484)
T ss_dssp TTEEEEEEECC--CCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGC-H
T ss_pred hhcEEEEEcCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhC-c
Confidence 35778999999 9999975 789999999 7889999998887653 134434445545567788898874 2
Q ss_pred cCCc---ceEEeeCC-----------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcCCcccCCCh
Q 015225 76 ELKV---PVRYLKED-----------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCCSFPL 124 (411)
Q Consensus 76 ~~~~---~i~~v~~~-----------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~~~~l 124 (411)
.++. .+.+..|. .+.|.++.... .++.+....-+++.+...|.+....=
T Consensus 149 ~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~D 228 (484)
T 3gue_A 149 TLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLD 228 (484)
T ss_dssp HHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCC
T ss_pred ccCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccC
Confidence 2221 12221110 02344442221 23444444568999999999653322
Q ss_pred HHHHHHHHhcCCeeEEEEEecCccccc-ceeEEEEc--------CCCC--ceeEEeccCCC--------cccCcccceEE
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESAH-QFGELIAD--------PNTK--ELLHYTEKPET--------FVSDLINCGVY 185 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~~d--------~~~~--~v~~~~e~~~~--------~~~~~~~~Giy 185 (411)
..++.++.+.++++.+-+.+. ..+. .-|.+... ..++ +++++.+-|.. ....+.+++-.
T Consensus 229 p~~lG~~~~~~~d~~~kvv~K--t~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi 306 (484)
T 3gue_A 229 VRLLDYMHEKQLGFLMEVCRR--TESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNI 306 (484)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC--CTTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEEEC--CCCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEeEeeeE
Confidence 556777888888877766664 3332 33433321 1234 46666654422 12234588888
Q ss_pred EeCHHHH
Q 015225 186 VFTPDFF 192 (411)
Q Consensus 186 i~~~~~~ 192 (411)
+++-..+
T Consensus 307 ~~~l~~l 313 (484)
T 3gue_A 307 WINLMEL 313 (484)
T ss_dssp EEEHHHH
T ss_pred EEEHHHH
Confidence 8887665
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=97.61 E-value=6.4e-05 Score=65.70 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=74.7
Q ss_pred CceEEEEEe--cCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEE-EEecccchHHHHHHHhhhcccCC
Q 015225 2 EKVVAVIMV--GGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQI-FLIGFYEEREFALYVSSISNELK 78 (411)
Q Consensus 2 ~~~~aiIla--~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I-~Iv~~~~~~~i~~~~~~~~~~~~ 78 (411)
+.|.+||++ |. ..|||.+ ...+......++||++|+++.+... +++.+ ++++++.. . .. .+
T Consensus 2 ~~~~~vip~k~g~--~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~-~~~~v~vvv~~~~~--~----~~---~~- 65 (211)
T 2i5e_A 2 NAMRAVIPYKKAG--AKSRLSP---VLSLQEREEFVELMLNQVISSLKGA-GIEQVDILSPSVYG--L----EE---MT- 65 (211)
T ss_dssp CCCEEEEECCCTT--TTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTT--C----SS---CC-
T ss_pred CceEEEEEeCCCC--CccccCc---cCCHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEEcCcHH--H----Hh---hc-
Confidence 468899999 77 8899965 2233333366799999999999996 78888 88876532 1 11 12
Q ss_pred cceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHH
Q 015225 79 VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLE 129 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~ 129 (411)
.+.++.+. .|.++++..+.+.+ .+.++++.||++. ...+..+++
T Consensus 66 -~~~~v~~~--~gl~~sl~~a~~~~----~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 66 -EARVLLDE--KDLNEALNRYLKEA----EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp -SSEEEECC--SCHHHHHHHHHHHC----CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred -CCEEEECC--CCHHHHHHHHHHhc----CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 34556554 68889998887765 3789999999985 444666654
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0027 Score=63.20 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=111.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccCCC--CcEEEEecccchHHHHHHHhhhcccC
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRIPN--LAQIFLIGFYEEREFALYVSSISNEL 77 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~~g--i~~I~Iv~~~~~~~i~~~~~~~~~~~ 77 (411)
++.+|+|||| .|+||+- ..||.++|++ +++++++.++++.+..| +.-++.......+.+.++++++. .-
T Consensus 114 kvavvllaGG--lGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fg-l~ 187 (630)
T 3ogz_A 114 KTVFVLVAGG--LGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQ-LE 187 (630)
T ss_dssp GEEEEEECCC--EEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTT-CC
T ss_pred hceEEEecCC--cccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhC-CC
Confidence 5778999999 9999976 7799999997 99999999999886422 44344455556677888888721 11
Q ss_pred CcceEEeeCCC----------------------CCCChHHHHH-----------------------HHHHhhccCCCeEE
Q 015225 78 KVPVRYLKEDK----------------------PHGSAGGLYY-----------------------FRDMIMEENPSHII 112 (411)
Q Consensus 78 ~~~i~~v~~~~----------------------~~g~~~~l~~-----------------------~~~~i~~~~~~~~l 112 (411)
..++.+..|.. +.|.++.... .++.+...+-+++.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 11333332210 2344432221 23444334468899
Q ss_pred EEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCce-----eEEecc---------CC-C-
Q 015225 113 LLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKEL-----LHYTEK---------PE-T- 174 (411)
Q Consensus 113 v~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~v-----~~~~e~---------~~-~- 174 (411)
+...|.+. ...-..++-.+.++++++.+-+.+. .....-|.+.. ...+|+. ++|.|- ++ .
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~ 345 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDE 345 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEEC--CCCcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccc
Confidence 99999954 2222346677788888877666653 33344565543 1134554 333321 11 0
Q ss_pred ------cccCcccceEEEeCHH-HHHHhhh
Q 015225 175 ------FVSDLINCGVYVFTPD-FFTAIQG 197 (411)
Q Consensus 175 ------~~~~~~~~Giyi~~~~-~~~~l~~ 197 (411)
......|+..++|+-+ +.+.+.+
T Consensus 346 ~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 346 VSDPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp -----CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred cccccccccccccceeeeEEHHHHHHHHHh
Confidence 1122348899999986 5556554
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=1.6 Score=37.97 Aligned_cols=94 Identities=14% Similarity=0.069 Sum_probs=63.1
Q ss_pred cchhHhHHHHhccCCCC-cEEEEecccchHHHHHHHhhhcccCCcceEEeeCC--------CCCCChHHHHHHHHHhhcc
Q 015225 36 QPMIQHPISACKRIPNL-AQIFLIGFYEEREFALYVSSISNELKVPVRYLKED--------KPHGSAGGLYYFRDMIMEE 106 (411)
Q Consensus 36 ~pli~~~l~~l~~~~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~--------~~~g~~~~l~~~~~~i~~~ 106 (411)
...|..+|+.+..+... -+|+|+-....+...+.+++... ...+.++... ...|.+.+...+++...
T Consensus 13 ~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~-- 88 (255)
T 1qg8_A 13 SDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE-- 88 (255)
T ss_dssp TTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--cCCEEEEecccccccccccccCHHHHHHHHHHHcC--
Confidence 36788888888765221 24666644444555666666422 4567877765 55677778777777654
Q ss_pred CCCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 107 NPSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 107 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|.+...+ +..+++...+.
T Consensus 89 -g~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 89 -GEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp -CSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred -CCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 5888999999987444 78888877655
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=90.10 E-value=1.1 Score=43.57 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=69.4
Q ss_pred CcccCCc--chhHhHHHHhccCCCCc---EEEEecccchH-HHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHh
Q 015225 30 LFPLAGQ--PMIQHPISACKRIPNLA---QIFLIGFYEER-EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMI 103 (411)
Q Consensus 30 llpi~g~--pli~~~l~~l~~~~gi~---~I~Iv~~~~~~-~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i 103 (411)
.+|.-|. ..|..+|+.+.....-. +|+||-....+ ...+.+++..+.++.+++++......|.+.+...+++..
T Consensus 34 IIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A 113 (472)
T 1xhb_A 34 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVS 113 (472)
T ss_dssp EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhc
Confidence 3455565 48888999887753222 67776433222 233444443233444688887766678888888888766
Q ss_pred hccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCee
Q 015225 104 MEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMG 138 (411)
Q Consensus 104 ~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~ 138 (411)
. .+.++++.+|... +.-|..+++...+....+
T Consensus 114 ~---gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 114 R---GQVITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp C---SSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred c---CCeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 4 5888899999986 555889988877665444
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.86 E-value=1.4 Score=37.88 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=60.0
Q ss_pred chhHhHHHHhccCCCCc--EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPNLA--QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~--~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..|...|+.+..+ ... +|+||-....+...+.+++...+. ..+.++.. +..|.+.+.-.+++... .+.++++
T Consensus 18 ~~l~~~l~Sl~~q-~~~~~eiIvvDd~S~d~t~~~~~~~~~~~-~~i~~i~~-~n~G~~~a~N~g~~~a~---g~~i~~l 91 (240)
T 3bcv_A 18 KYLDQCVQALLAQ-TLSDIEIILIDDESPDNCPKICDDYAAQY-PNIKVIHK-KNAGLGMACNSGLDVAT---GEYVAFC 91 (240)
T ss_dssp TTHHHHHHHHHTC-SSSSEEEEEEECCCSSSHHHHHHHHHHHC-SSEEEEEC-CCCCHHHHHHHHHHHCC---SSEEEEC
T ss_pred HHHHHHHHHHHhC-cCCCeEEEEEECCCCcCHHHHHHHHHhhC-CCEEEEEC-CCCChHHHHHHHHHHcC---CCEEEEE
Confidence 4677888887765 222 466554322222233343322222 24666664 45688888888877664 5888999
Q ss_pred cCCcccCCC-hHHHHHHHHhcCCeeE
Q 015225 115 NCDVCCSFP-LPDLLEAHKRYGGMGT 139 (411)
Q Consensus 115 ~~D~i~~~~-l~~~l~~~~~~~~~~~ 139 (411)
.+|.+...+ |..+++...+.+.+++
T Consensus 92 D~Dd~~~~~~l~~l~~~~~~~~~~~v 117 (240)
T 3bcv_A 92 DSDDYVDSDMYMTMYNVAQKYTCDAV 117 (240)
T ss_dssp CTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence 999987444 7888887776566644
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=89.33 E-value=0.75 Score=40.51 Aligned_cols=88 Identities=6% Similarity=0.019 Sum_probs=60.3
Q ss_pred cchhHhHHHHhccCCCCcEEEEecccchHHH---HHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEE
Q 015225 36 QPMIQHPISACKRIPNLAQIFLIGFYEEREF---ALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHII 112 (411)
Q Consensus 36 ~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i---~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~l 112 (411)
++|+.++++.+... +...++++++...... ..+. +..+.++.+ ...|.+.++..+...+.....+.++
T Consensus 37 ~~ll~~tl~~~~~~-~~~~vvvvt~~~~~~~~~~~~~~-------~~~~~~~~q-~~~gLg~rl~~a~~~~~~~~~~~vl 107 (242)
T 3cgx_A 37 RHFVQDMLQGLARL-HADLHICYVPGDADLPEKFKAWL-------GPQHMFAAQ-QGLDLGERMKHAMQKAFDDGYDRVV 107 (242)
T ss_dssp HHHHHHHHHHHTTS-SSEEEEEECCCCTTHHHHHHHHH-------CTTSEEEEC-CSSSHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEcCCchhhhhhhhhhc-------cCCcEEecC-CCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 58999999999996 7777777766544332 2222 123455555 3468899999988765222247899
Q ss_pred EEcCCccc--CCChHHHHHHHH
Q 015225 113 LLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 113 v~~~D~i~--~~~l~~~l~~~~ 132 (411)
++.+|++. ...|..+++...
T Consensus 108 iigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 108 LMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp EECSSCTTCCHHHHHHHHHHTT
T ss_pred EEcCCCCCCCHHHHHHHHHHhc
Confidence 99999985 556788776543
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=3.7 Score=40.99 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=66.4
Q ss_pred cccCCc--chhHhHHHHhccCCCCc---EEEEecccch-HHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 31 FPLAGQ--PMIQHPISACKRIPNLA---QIFLIGFYEE-REFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~--pli~~~l~~l~~~~gi~---~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
+|.-|. ..|..+|+.+....... +|+||-.... +.+.+.++++.+.+ ..+.++......|.+.+...+++...
T Consensus 118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~-~~v~vi~~~~n~G~~~A~N~G~~~A~ 196 (570)
T 2d7i_A 118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALF-PSVRILRTKKREGLIRTRMLGASVAT 196 (570)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTS-TTEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhC-CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 455565 47888888877642222 6777644322 22134444432223 36788877666788888888888664
Q ss_pred ccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCe
Q 015225 105 EENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~ 137 (411)
.+.++++.+|... +.-|..+++...+....
T Consensus 197 ---gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~ 227 (570)
T 2d7i_A 197 ---GDVITFLDSHCEANVNWLPPLLDRIARNRKT 227 (570)
T ss_dssp ---SSEEEECCSSEEECTTCSHHHHHHHHHCTTE
T ss_pred ---CCEEEEEcCCccccccHHHHHHHHHHhCCCE
Confidence 5788899999986 45588888887665433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 411 | ||||
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 2e-33 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 5e-31 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 2e-29 | |
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 2e-20 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 6e-17 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 2e-14 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 5e-14 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 3e-11 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 3e-11 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 1e-10 | |
| d1fxja1 | 78 | b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha | 2e-10 | |
| d2jf2a1 | 262 | b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra | 2e-09 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 5e-08 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 8e-07 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 2e-05 | |
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 7e-08 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 9e-08 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 9e-08 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 1e-07 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 4e-07 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 3e-06 | |
| d1qwja_ | 228 | c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou | 4e-05 | |
| d1w55a1 | 205 | c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, | 8e-05 | |
| d1g97a1 | 196 | b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha | 8e-05 | |
| d1mr7a_ | 203 | b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero | 2e-04 | |
| d1mr7a_ | 203 | b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero | 0.004 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 2e-04 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 0.001 | |
| d1v3wa_ | 173 | b.81.1.5 (A:) Ferripyochelin binding protein {Arch | 2e-04 | |
| d1e5ka_ | 188 | c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro | 2e-04 | |
| d1h7ea_ | 245 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 0.003 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 124 bits (313), Expect = 2e-33
Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 8/187 (4%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+I+ GG GTR P + K L P+ +PMI +P+S + +I +I ++
Sbjct: 4 GIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTP 60
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ + + ++Y + P G A I + ++L ++
Sbjct: 61 RFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDL--SALVLGDNLYYGHDFH 118
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+LL + + ++ V ++G + D K + EKP S+ G+Y
Sbjct: 119 ELLGSASQRQTGASVFAYHVL--DPERYGVVEFDQGGK-AISLEEKPLEPKSNYAVTGLY 175
Query: 186 VFTPDFF 192
+
Sbjct: 176 FYDQQVV 182
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 117 bits (296), Expect = 5e-31
Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+I+ GG GTR P++ K L P+ +PMI +P+S + +I +I E++
Sbjct: 4 GIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKG 60
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ + +E + + Y ++ P G A + E ++L ++
Sbjct: 61 YFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPS--CLVLGDNIFFGQGFS 118
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
L T+ +V +FG + D N + + EKP+ S+ G+Y
Sbjct: 119 PKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNFR-AISLEEKPKQPKSNWAVTGLY 175
Query: 186 VFTPDFFTAIQGV 198
+ + V
Sbjct: 176 FYDSKVVEYAKQV 188
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 113 bits (284), Expect = 2e-29
Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 10/229 (4%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+++ GG GTR P++ K L P+ +PMI +P+S + I +I +
Sbjct: 6 GIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLP 62
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ ++ V Y +++P G A +D I + ++L +V
Sbjct: 63 LYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKV--ALVLGDNVFYGHRFS 120
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
++L + V FG ++ + ++ EKP S+ + G+Y
Sbjct: 121 EILRRAASLEDGAVIFGYYV--RDPRPFG-VVEFDSEGRVISIEEKPSRPKSNYVVPGLY 177
Query: 186 VFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATR--TLPVDFVRLD 232
+ + + I V+ R + LD
Sbjct: 178 FYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLD 226
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 88.9 bits (219), Expect = 2e-20
Identities = 48/293 (16%), Positives = 94/293 (32%), Gaps = 63/293 (21%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFY 61
V+ +I+ GG GTR PL+ KP PL +I P+S C N+++I+++ +
Sbjct: 11 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQF 67
Query: 62 EEREFALYVSSISNELKVPVRYLK-------------EDKPHGSAGGLYYFRDMIMEENP 108
++S + D G+A + + + E
Sbjct: 68 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTV 127
Query: 109 SHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHY 168
++L D ++AH+ T+ + + + A FG + D ++ +
Sbjct: 128 LEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEF 186
Query: 169 TEKPET---------------------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRAN 207
EKP+ + + + G+YV + D + R
Sbjct: 187 AEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL--------LRDK 238
Query: 208 IRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTP 260
+ F + I + ++ Y +WE I T
Sbjct: 239 FPGANDFG----------------SEVIPGATSLGMRVQAYLYDGYWEDIGTI 275
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 78.2 bits (191), Expect = 6e-17
Identities = 37/257 (14%), Positives = 71/257 (27%), Gaps = 25/257 (9%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ GG GTR + PKP+ + G+P++ H + + ++
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSV------------HGIKD 50
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
F + +K + ++ + + L S
Sbjct: 51 FIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGG 110
Query: 126 DLLEAHKRYGGMGTMLVI--KVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCG 183
L + L A+ + + K+ P L
Sbjct: 111 RLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQA 170
Query: 184 VYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243
V + G + + V + D +Q+ L LA +
Sbjct: 171 GQVRSFQEKPKGDGAMINGGFFVLNPSVIDL---------IDNDATTWEQEPLMTLAQQG 221
Query: 244 QLYTYETMDFWEQIKTP 260
+L +E FW+ + T
Sbjct: 222 ELMAFEHPGFWQPMDTL 238
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 70.5 bits (171), Expect = 2e-14
Identities = 27/198 (13%), Positives = 70/198 (35%), Gaps = 15/198 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+ G KGTR + + PK L +AG M++H + I + + ++
Sbjct: 4 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAEL 57
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS-FPL 124
++ + ++ + + G+ + ++ + +++ + L
Sbjct: 58 VEEVLAGQTE-------FVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESL 110
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFV-SDLINCG 183
+L++ H + + T+L + + + ++ + + IN G
Sbjct: 111 KNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTG 170
Query: 184 VYVFTPDFFTAIQGVLTH 201
YVF + +
Sbjct: 171 TYVFDNERLFEALKNINT 188
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 68.9 bits (167), Expect = 5e-14
Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 24/197 (12%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
+V A+I+ G GTR RPL+ NTPK L + +P+I++ I K I ++G+ +
Sbjct: 3 RVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 60
Query: 63 EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF 122
E+ YLKE Y L
Sbjct: 61 EQF----------------DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDA 104
Query: 123 PLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINC 182
+ T + + F D + + I
Sbjct: 105 DNYLFKNMFRNDLTRSTYFSVYREDCTNEWFLVYGDD------YKVQDIIVDSKAGRILS 158
Query: 183 GVYVFTPDFFTAIQGVL 199
GV + I +
Sbjct: 159 GVSFWDAPTAEKIVSFI 175
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 60.9 bits (146), Expect = 3e-11
Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 14/187 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
VI+ G KGTR + PK L LAG+ M+QH I A + + G +
Sbjct: 5 VVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ ++ + + G+ + ++ + L DV
Sbjct: 60 KQALK-------DDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILM--LYGDVPLISVET 110
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+ G +L +K+ + + T + H E IN G+
Sbjct: 111 LQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGIL 170
Query: 186 VFTPDFF 192
+
Sbjct: 171 IANGADM 177
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 61.2 bits (147), Expect = 3e-11
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNT-PKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGF 60
K A++M GG +G R PLS PKP PL + +++ + + + L
Sbjct: 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVR 59
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ A + L P +AG + ++E +++L D
Sbjct: 60 RDQEAVARPYADGIRLLLEP-------LGRDTAGAVLLGVAEALKEGAERLLVLPADHYV 112
Query: 121 SFP 123
Sbjct: 113 GDD 115
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 58.9 bits (141), Expect = 1e-10
Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 6/191 (3%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
K +A+I G G RF + PK + + +++H + +R + ++ E
Sbjct: 3 KNIALIPAAG--IGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPE 57
Query: 63 EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF 122
+ ++ + + + E + + S
Sbjct: 58 DTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSE 117
Query: 123 PLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINC 182
L L+E G + V + G++ A + + L + P+ F + L++
Sbjct: 118 ALARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVD-RSGLWQAQTPQLFQAGLLHR 176
Query: 183 GVYVFTPDFFT 193
+ T
Sbjct: 177 ALAAENLGGIT 187
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (131), Expect = 2e-10
Identities = 14/69 (20%), Positives = 31/69 (44%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349
+ G + ++ I NV++ V++G G + + ++ DD EI VV ++
Sbjct: 8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDA 67
Query: 350 IIGWKSSLG 358
+ ++G
Sbjct: 68 NLAAACTIG 76
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Score = 55.6 bits (133), Expect = 2e-09
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 293 IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLNSII 351
I ++HP+A V A IG N I VG V + ++ V + + +
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61
Query: 352 GWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIV 395
++ + V + Y + +G+ + + V + V
Sbjct: 62 IYQFASIGE--VNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTV 103
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 51.2 bits (121), Expect = 5e-08
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSL 357
I +A + P A+I V I +G GV + + V++ N + ++ +G + +
Sbjct: 3 IAKTAIISPKAEINKGVEIGEFCVIGDGV-----KLDEGVKLHNNVTLQGHTFVGKNTEI 57
Query: 358 GRWARVQGNG 367
+A +
Sbjct: 58 FPFAVLGTQP 67
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 47.7 bits (112), Expect = 8e-07
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL-N 348
+ IA I P A+++ +IG I V++ GV+L + + + +N +
Sbjct: 1 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 60
Query: 349 SIIGWKSSLGRWARVQGN 366
+++G + ++
Sbjct: 61 AVLGTQPQDLKYKGEYSE 78
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 13/81 (16%), Positives = 26/81 (32%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349
+A I+ I+ ++ IG V + V++ V L + VL +
Sbjct: 6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGT 65
Query: 350 IIGWKSSLGRWARVQGNGDYN 370
G ++ + D
Sbjct: 66 QPQDLKYKGEYSELIIGEDNL 86
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 50.4 bits (119), Expect = 7e-08
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 1 MEK-VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN 51
MEK V +++ GG +G R + + PK PL GQP+ + R+P
Sbjct: 1 MEKSVSVILLAGG--QGKRMK---MSMPKQYIPLLGQPIALYSFFTFSRMPE 47
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 50.4 bits (119), Expect = 9e-08
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
V AV+ G G R + PK + Q +++H + A P + ++ +
Sbjct: 3 DVCAVVPAAG--FGRRMQ---TECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPG 57
Query: 63 EREF 66
+ F
Sbjct: 58 DSRF 61
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 50.0 bits (118), Expect = 9e-08
Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEER 64
VA+++ G KG R N PK + G+ + ++P+S + + + ++ E
Sbjct: 5 VAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF 59
Query: 65 EFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
E + +E + + + + L + + + +PS++++ +
Sbjct: 60 EVVEKR--VFHEKVLGIVEGGDTRSQSVRSALEF----LEKFSPSYVLVHDSARPF 109
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 49.9 bits (118), Expect = 1e-07
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIP 50
+ A+++ GG K K L P G+PM++ + A
Sbjct: 2 RPSAIVLAGG--KEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAAG 46
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 49.1 bits (116), Expect = 4e-07
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLG 358
+A +I N I+ + VR+ + +D +I + A + +++ SS+
Sbjct: 60 YDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVR 119
Query: 359 RWARV 363
+
Sbjct: 120 EECAI 124
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 46.4 bits (109), Expect = 3e-06
Identities = 13/78 (16%), Positives = 28/78 (35%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349
+A I +A++ + NV I NV + + D+V I+ ++V
Sbjct: 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122
Query: 350 IIGWKSSLGRWARVQGNG 367
I + + + +
Sbjct: 123 AIYGDARVLNQSEILAIQ 140
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 4e-05
Identities = 14/192 (7%), Positives = 42/192 (21%), Gaps = 12/192 (6%)
Query: 3 KVVAVIMVGGPTKG--TRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
+ A++ +G K + LAG P+I + A +++
Sbjct: 3 HLAALV----LARGGSKGIPL------KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD 52
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++E E + + + + +
Sbjct: 53 HDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTD 112
Query: 121 SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLI 180
+ +++ + + + + +P + +
Sbjct: 113 LQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYE 172
Query: 181 NCGVYVFTPDFF 192
N Y
Sbjct: 173 NGSFYFAKRHLI 184
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 5/48 (10%)
Query: 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN 51
+ +++ G TRF K L P+ +
Sbjct: 2 MSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYP 44
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 41.2 bits (95), Expect = 8e-05
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKEN 343
YI ++ +I NV++ ++GA L + + D I
Sbjct: 9 TYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAG 55
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN-SIIGWKSSL 357
++P I P + NV VG S + E + ++ + I+ K +
Sbjct: 8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSK----NGETFDKQILYHYPILNDKLKI 63
Query: 358 GRWARVQGNGDYNAKLGITIL 378
G++ + +
Sbjct: 64 GKFCSIGPGVTIIMNGANHRM 84
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Score = 36.0 bits (82), Expect = 0.004
Identities = 11/112 (9%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI--SCIVLDDVEIKENAVV- 346
+I P + ++G + +++ I+ D ++I + +
Sbjct: 11 IEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIG 70
Query: 347 --------LNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390
+ S+ G + KL + + ++V +
Sbjct: 71 PGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWI 122
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGV 327
I P+A + P A + V+I ANV V
Sbjct: 25 IDPTAYIDPQASVIGEVTIGANVMVSPMA 53
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/78 (17%), Positives = 24/78 (30%)
Query: 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349
+ I YI P A V IG NV +S + + + + +
Sbjct: 22 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALE 81
Query: 350 IIGWKSSLGRWARVQGNG 367
I + V+ +G
Sbjct: 82 TINEEGEPIEDNIVEVDG 99
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWK-- 354
IHPSA V A + +V + V L I V N SI
Sbjct: 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGY 70
Query: 355 ---------SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI-NSIVLPNKVL 401
G+Y +++ + + D V++ ++V PNK +
Sbjct: 71 PTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEI 127
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISAC 46
M + V++ GG K R K L L G+P+ QH A
Sbjct: 1 MTTITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADAL 40
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.003
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 14/58 (24%)
Query: 3 KVVAVIMVGGPTKG--TRFRPLSFNTP-KPLFPLAGQPMIQHPISACKRIPNLAQIFL 57
K V VI P + +R P KPL + G+PMIQH ++ +A++++
Sbjct: 2 KAVIVI----PARYGSSRL-------PGKPLLDIVGKPMIQHVYERALQVAGVAEVWV 48
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 411 | |||
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.96 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.93 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.9 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.66 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.65 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.61 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.59 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.59 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.58 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.55 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.54 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.54 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.54 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.5 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.49 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.47 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.44 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.43 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.41 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.4 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.4 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.4 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.4 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.4 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.4 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.38 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.37 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.35 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.34 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.31 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.3 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.28 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.23 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.2 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.16 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.16 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.15 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.12 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.01 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.97 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.95 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.95 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.92 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 98.89 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.81 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.77 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.68 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.22 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.21 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 97.92 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 89.49 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 87.78 | |
| d2i5ea1 | 208 | Hypothetical protein MM2497 {Methanosarcina mazei | 85.0 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 83.81 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.1e-40 Score=299.91 Aligned_cols=237 Identities=18% Similarity=0.285 Sum_probs=205.3
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecc-cchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF-YEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~-~~~~~i~~~~~~~~~~~~~~i 81 (411)
+++||||||| .||||+|+|..+||||+||+|+|||+|+|++|..+ |+++|+|++. ++.+.+++++.+. ++++.++
T Consensus 1 k~KavILAgG--~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~-Gi~ei~ii~~~~~~~~i~~~~~~~-~~~g~~I 76 (292)
T d1fxoa_ 1 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDG-SNWGLDL 76 (292)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred CcEEEEECCC--CCCcCChhhcCCCcccCEECCEehHHHHHHHHHHC-CCCEEEEEeCcCCHHHHHHHhccc-cccCeEE
Confidence 5799999999 99999999999999999999999999999999997 9999976654 6678888888774 5688999
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
.++.|.++.|++++++.|.+++.. ++.|+++++|.+++.++.+++++|.++++.+++++.++ +++.+||++..| +
T Consensus 77 ~y~~q~~~~Gta~ai~~a~~~i~~--~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V--~~p~~yGV~~~d-~ 151 (292)
T d1fxoa_ 77 QYAVQPSPDGLAQAFLIGESFIGN--DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFD-Q 151 (292)
T ss_dssp EEEECSSCCCGGGHHHHTHHHHTT--SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC--SCGGGSEEEEEC-T
T ss_pred EEccCCCCCcHHHHHHhhhhhcCC--CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEEC--CCHHHCeEEEEc-C
Confidence 999999999999999999999962 34567788888899999999999999999999999998 888999999999 7
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++++.+.|||..+.|+++.+|+|+|++++++.+++..+.. .+...+ +|+++.+++
T Consensus 152 ~~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~-----------------------rgE~ei-tD~~~~~l~ 207 (292)
T d1fxoa_ 152 GGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSP-----------------------RGELEI-TDVNRAYLE 207 (292)
T ss_dssp TSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCT-----------------------TSSCCH-HHHHHHHHH
T ss_pred CCCEeEEEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCC-----------------------CCchhh-HHHHHHHHH
Confidence 89999999999999999999999999999999887753321 122334 889998888
Q ss_pred CCceEEEeec-c-eeeecCCccchhhcchHHHh
Q 015225 242 KKQLYTYETM-D-FWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 242 ~~~v~~~~~~-~-~~~~I~t~~d~~~a~~~~l~ 272 (411)
.+++.++... + +|.|+||+++|++|+..+..
T Consensus 208 ~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~~ 240 (292)
T d1fxoa_ 208 RGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT 240 (292)
T ss_dssp TTCEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 8877766553 3 69999999999999976543
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.5e-39 Score=292.64 Aligned_cols=233 Identities=18% Similarity=0.270 Sum_probs=200.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i~ 82 (411)
|+||||||| .||||+|+|..+||+|+||+|+|||+|+|+.|..+ |+++|+|+++++ .+.+++++++. ++++.++.
T Consensus 2 MkaiIlagG--~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~-gi~~i~iv~~~~~~~~~~~~~~~g-~~~gi~I~ 77 (291)
T d1mc3a_ 2 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDG-SEFGIQLE 77 (291)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEE
T ss_pred ccEEEECCc--CccccchhhcCCCccccEECCEehHHHHHHHHHHc-CCCEEEEEeCcccHHHHHHHhCch-HhhCcEEE
Confidence 789999999 99999999999999999999999999999999997 999998887754 45677777764 56899999
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCe-EEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSH-IILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~-~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
|+.|+.+.|+++|+..+.++++ +++ +|++.+|.++..++..++++|.+....+|++++++ +++++||++..| +
T Consensus 78 y~~Q~~plGta~Ai~~a~~fi~---~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V--~dP~~yGVve~d-~ 151 (291)
T d1mc3a_ 78 YAEQPSPDGLAQAFIIGETFLN---GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFD-D 151 (291)
T ss_dssp EEECSSCCCSTHHHHHTHHHHT---TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEE-T
T ss_pred EEECCCCCchHHHHHHHHHHhC---CCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEEC--CCcccCCCceec-c
Confidence 9999999999999999999996 344 55666667789999999999998888999999999 899999999999 7
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|..+.|||..+.++++++|+|+|++++++.+++..++. .+.+.+ +|+++.+++
T Consensus 152 ~g~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~-----------------------rgE~EI-tdl~~~~l~ 207 (291)
T d1mc3a_ 152 NFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSE-----------------------RGELEI-TSINQMYLE 207 (291)
T ss_dssp TEEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCS-----------------------SSSCCH-HHHHHHHHH
T ss_pred CcceeEEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCC-----------------------CCceee-hHHHHHHHH
Confidence 88999999999999999999999999999999987754322 122334 788888887
Q ss_pred CCceEEEee-cc-eeeecCCccchhhcchHH
Q 015225 242 KKQLYTYET-MD-FWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 242 ~~~v~~~~~-~~-~~~~I~t~~d~~~a~~~~ 270 (411)
.+++..+.. .+ +|.|+||++++++|+...
T Consensus 208 ~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 208 AGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp TTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred cCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 776655543 34 699999999999998755
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=4.9e-34 Score=264.67 Aligned_cols=237 Identities=17% Similarity=0.270 Sum_probs=198.2
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~ 80 (411)
..|+||||||| .||||+|+|..+||||+||+|+|||+|++++|..+ |+++++|++++. .+.+++++.+. +.++.+
T Consensus 2 ~~MkavIlagG--~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~-g~~~i~Iv~~~~~~~~~~~~~~~~-~~~~~~ 77 (295)
T d1lvwa_ 2 AHMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDG-SQFGVR 77 (295)
T ss_dssp CSCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTS-GGGTSE
T ss_pred CCcEEEEECCC--CcccCCcccCCCCcccCeECCEEHHHHHHHHHHHC-CCCeEEEEeCcccHHHHHHHhccc-hhcCCE
Confidence 36999999999 99999999999999999999999999999999997 999999888765 46677777664 456788
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
+.++.++++.||++|++.+.+++.. ++.++++++|+++..++..++..|.+...++++++.+. .+++.||++..+
T Consensus 78 i~~v~e~~~~gta~Al~~a~~~l~~--~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~--~~~~~yG~i~~~- 152 (295)
T d1lvwa_ 78 FSYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFD- 152 (295)
T ss_dssp EEEEECSSCCCGGGHHHHTHHHHTT--SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC--SCCTTSEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEc--CCCccccEEEEC-
Confidence 9999999999999999999999962 34577778888888999999999999989999999888 778899999998
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++++|.+|.|||..+.+.++++|+|+|++.+|..+.+..... .+.+.+ .++++.++
T Consensus 153 ~~~~v~~~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~-----------------------~~e~~~-~~~~~~~~ 208 (295)
T d1lvwa_ 153 SEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSD-----------------------RGELEI-TSVNEEYL 208 (295)
T ss_dssp TTSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCT-----------------------TSCCCH-HHHHHHHH
T ss_pred CCCcEEEEeecccCcccceeecceEEECHHHHHHHHhcCCCc-----------------------CCCeec-cchHHHHH
Confidence 688999999999988889999999999999998877643221 111222 56777666
Q ss_pred CCC--ceEEEeecceeeecCCccchhhcchHHH
Q 015225 241 GKK--QLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 241 ~~~--~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
..+ +++.+....+|.|+++++++..++..+.
T Consensus 209 ~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 209 RMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp HTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 554 4566666779999999999999987653
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=9.6e-34 Score=264.67 Aligned_cols=244 Identities=18% Similarity=0.298 Sum_probs=191.7
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------ 75 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------ 75 (411)
++.||||||| +||||+|+|..+||+||||+|+ |||+|+|++|.++ |+++|+|+++++.+.+.+|+.+...
T Consensus 11 ~~~AIILAaG--~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~ 87 (307)
T d1yp2a2 11 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY 87 (307)
T ss_dssp HEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred ceEEEEECCC--CcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHc-CCCEEEEEeccccccchhhhhcccccccccc
Confidence 4889999999 9999999999999999999885 9999999999997 9999999999988888888876421
Q ss_pred -cCCcceEEeeC------CCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcc
Q 015225 76 -ELKVPVRYLKE------DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAE 148 (411)
Q Consensus 76 -~~~~~i~~v~~------~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 148 (411)
..+....+..+ ....|++++++.++..+.....++|++++||.++..++..+++.|+.++..++++......+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (307)
T d1yp2a2 88 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK 167 (307)
T ss_dssp --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred cccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccc
Confidence 11222222222 22458999999999999765568999999999999999999999999999988888877656
Q ss_pred cccceeEEEEcCCCCceeEEeccCCCc---------------------ccCcccceEEEeCHHHHHHhhhhhhccccccc
Q 015225 149 SAHQFGELIADPNTKELLHYTEKPETF---------------------VSDLINCGVYVFTPDFFTAIQGVLTHREDRAN 207 (411)
Q Consensus 149 ~~~~~g~v~~d~~~~~v~~~~e~~~~~---------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~ 207 (411)
....||++.+| ++++|..|.|+|... ...+.++|+|+|++++|..+.+...
T Consensus 168 ~~~~~gvv~~d-~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~------- 239 (307)
T d1yp2a2 168 RATAFGLMKID-EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF------- 239 (307)
T ss_dssp HHTTSEEEEEC-TTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTC-------
T ss_pred cccccceEEEC-CCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcc-------
Confidence 67889999999 789999999987521 2457789999999998865543211
Q ss_pred ccccchhhhhhhcccCCCCceeeeccchhhcccCCC-ceEEEeecceeeecCCccchhhcchHHHhhhh
Q 015225 208 IRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK-QLYTYETMDFWEQIKTPGMSLKCSSLYLALFK 275 (411)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~ 275 (411)
.+..++..++++.+++++ ++.++..+|+|.||+||++|++|+..+++...
T Consensus 240 ------------------~~~~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~ 290 (307)
T d1yp2a2 240 ------------------PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPV 290 (307)
T ss_dssp ------------------TTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSS
T ss_pred ------------------ccccchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCC
Confidence 122234478888877654 89999999999999999999999988876553
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3.1e-29 Score=227.50 Aligned_cols=231 Identities=20% Similarity=0.312 Sum_probs=175.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------ 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------ 75 (411)
|..+||||||| +||||+|+|...||||+||+|+|||+|+|+.|.++ |+++|+|++++..+.+++++.+...
T Consensus 1 ~~~kAiILAAG--~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~-gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~ 77 (259)
T d1tzfa_ 1 MASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVT 77 (259)
T ss_dssp CCCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEE
T ss_pred CCceEEEECCC--ccccCChhhCCCCccceEECCEEHHHHHHHHHHHc-CCCeeeeccchhHHHHHHHHhcchhcccccc
Confidence 34799999999 99999999999999999999999999999999997 9999999999999999999875321
Q ss_pred --------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEE
Q 015225 76 --------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 76 --------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~ 141 (411)
.....+.++.+....++.+++..+.+.+. .++.|+++.+|.+++.++...++.+.......+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (259)
T d1tzfa_ 78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK--DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT--TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred chhccccchhhhccccccceeEEeccccccccchhhhhhhhcc--CCCceEEeccccccccchhhhhhhhcccccceeec
Confidence 00123556666677788888888777654 25779999999999999999999998888776665
Q ss_pred EEecCcccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcc
Q 015225 142 VIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSAT 221 (411)
Q Consensus 142 ~~~~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (411)
... +.+.++.+... ..++..+.+.+. ..+.+..+|+|++++++++.+.+.
T Consensus 156 ~~~----~~~~~~~~~~~--~~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~----------------------- 205 (259)
T d1tzfa_ 156 ATF----PPGRFGALDIQ--AGQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDND----------------------- 205 (259)
T ss_dssp EEC----CCCCSEEEEEE--TTEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCST-----------------------
T ss_pred ccc----ccccCCceecc--cceEEeeeeccc-cceeeecceeccccchhhhhcccC-----------------------
Confidence 543 34556655554 566766665543 346678999999999987665432
Q ss_pred cCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhh
Q 015225 222 RTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 222 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
...+..++++.|+++++++++..+++|.+|||++||..++..+.+.
T Consensus 206 ------~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~ 251 (259)
T d1tzfa_ 206 ------ATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp ------TCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred ------cCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcC
Confidence 1223367889999888999999999999999999999888766653
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=1.9e-29 Score=225.04 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=167.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|+|+||||||| .|+||+|+|...||+|+||+|+|||+|+++.|.++ |+++|+|++++..+.++.+.. .++.++
T Consensus 2 m~mkaiIlaaG--~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~-g~~~i~iv~g~~~e~i~~~~~----~~~i~i 74 (229)
T d1jyka_ 2 IRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKE----KYGVRL 74 (229)
T ss_dssp CCCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHH----HHCCEE
T ss_pred CceeEEEECCC--CcccCCccccCCCcceeEECCEEHHHHHHHHHHHh-CCcccccccccchhhhhhhhh----hccccc
Confidence 56999999999 99999999999999999999999999999999997 999999999887766644333 356677
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
.+..+....|++++++.+.+.+. ++|++.++|.++...+...+ ..+.+++... .++..++.+..+ +
T Consensus 75 ~~~~~~~~~Gt~~sl~~a~~~l~----~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~-~ 140 (229)
T d1jyka_ 75 VFNDKYADYNNFYSLYLVKEELA----NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYR--EDCTNEWFLVYG-D 140 (229)
T ss_dssp EECTTTTTSCTHHHHHTTGGGCT----TEEEEETTEEESSCCCCSCC-------CSEEEEECEE--SSCSSCCEEEEC-T
T ss_pred cccccccccccccccccchhhhc----ccccccccccccccchhhhh-------hccccceeee--eeccccceeEEc-c
Confidence 77777788899999999988874 67877777766655443321 1223333333 456677888888 7
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
++++..+.++|. ..+..+|+|+|++..++.+.+............ + . +..+++..+..
T Consensus 141 ~~~i~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~-~~~~~~~~~l~ 198 (229)
T d1jyka_ 141 DYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFV-----------------D-L-YWDNMVKDNIK 198 (229)
T ss_dssp TCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCT-----------------T-C-CTTHHHHTTGG
T ss_pred CCceeeEEEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccc-----------------h-h-HHHHHHHHHHH
Confidence 899999998864 456789999999977665555433221111110 0 0 11456666667
Q ss_pred CCceEEEeecc-eeeecCCccchhhcchHH
Q 015225 242 KKQLYTYETMD-FWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 242 ~~~v~~~~~~~-~~~~I~t~~d~~~a~~~~ 270 (411)
+..++++..++ .|.+|+|++||.++++.+
T Consensus 199 ~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 199 ELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp GCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred hCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 77888887776 699999999999987644
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=9.2e-29 Score=225.31 Aligned_cols=246 Identities=17% Similarity=0.235 Sum_probs=167.0
Q ss_pred CceEEEEEecCCCCCcccccC-CCCCCccCccc-CCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPL-SFNTPKPLFPL-AGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~pl-t~~~pK~llpi-~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++.||||||| .||||||+ +..+||+|+|| +|+|||+|+++++....+.+++++++++..+.+.++. +.
T Consensus 1 MKi~aVILAGG--~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~-------~~ 71 (268)
T d2cu2a2 1 MKTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPY-------AD 71 (268)
T ss_dssp CCEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG-------CS
T ss_pred CCceEEEecCC--CcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh-------cc
Confidence 34779999999 99999999 56789999997 6799999999999886577889988887776554332 23
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChH--HHHHH---HHhcCCeeEEEEEecCccccccee
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP--DLLEA---HKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~--~~l~~---~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
.+.++.+....||++++..+...+....++.++|++||.++..++. ..+.. +.+.+..+++...+. +.++.||
T Consensus 72 ~~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~yG 149 (268)
T d2cu2a2 72 GIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPT--RPETEYG 149 (268)
T ss_dssp SSEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCS--SCCSSSC
T ss_pred ccceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecccc--ccccccc
Confidence 4556666778899999988877665455789999999999866643 33333 224456666666665 7788999
Q ss_pred EEEEcCCCC---ceeEEeccCCCc-------ccCcccceEEEeCHHHH-HHhhhhhhcccccccccc--cchhhhhhhcc
Q 015225 155 ELIADPNTK---ELLHYTEKPETF-------VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQ--VSSFEALQSAT 221 (411)
Q Consensus 155 ~v~~d~~~~---~v~~~~e~~~~~-------~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 221 (411)
++..++..+ +|.+|.|||... ...++|+|+|+|+++++ +.+++..+...+...... ....+.+.
T Consensus 150 ~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~--- 226 (268)
T d2cu2a2 150 YIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYA--- 226 (268)
T ss_dssp EEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHH---
T ss_pred eEEeccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHh---
Confidence 998873222 799999999632 24689999999999865 444443332211000000 00000000
Q ss_pred cCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcc
Q 015225 222 RTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 222 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
.....+|+..+ |.+..++.++..+++|.|+||++++++..
T Consensus 227 ---~l~~iSiDyav---lEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 227 ---GLPKISIDYGV---MEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp ---TSCCCCHHHHT---GGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred ---hCccccchhhh---hcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 00011111112 23456899999999999999999888764
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.93 E-value=4.4e-25 Score=198.60 Aligned_cols=231 Identities=17% Similarity=0.284 Sum_probs=174.6
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
.||||||| .||||+| .+||||+||+|+|||+|+++.|.++ ++++++|++++..+.+..+... .+.+.
T Consensus 3 ~AIIlAaG--~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~-~~~~iivv~~~~~~~~~~~~~~-------~~~~~ 69 (250)
T d1g97a2 3 FAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-------QTEFV 69 (250)
T ss_dssp EEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGG-CCSEEEEEECTTHHHHHHHTTT-------TSEEE
T ss_pred EEEEECCC--CCCCCCC---CCCceeeEECCeeHHHHHHHHHHHc-CCCeEEEecccccchhhhhccc-------ccccc
Confidence 69999999 9999999 6899999999999999999999997 9999999998877666555433 34555
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc-cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC-CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
......|+.+++..+...+....++.+++..+|.+ ...+++.+++.|......+++...+. ..+..++.+..+ +.+
T Consensus 70 ~~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~ 146 (250)
T d1g97a2 70 TQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRN-DNA 146 (250)
T ss_dssp ECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEEC-TTC
T ss_pred ccccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhcccccccccee--cccCCCceEEEe-ece
Confidence 56667899999999988886443344444444544 36679999999999999988888877 667788888877 788
Q ss_pred ceeEEeccCCC----cccCcccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 164 ELLHYTEKPET----FVSDLINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 164 ~v~~~~e~~~~----~~~~~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
.+..+.++++. ....+..+|+|+|++..+. .+....... ..+.+.+ +++++.
T Consensus 147 ~v~~~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~~~~~~ 203 (250)
T d1g97a2 147 EVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNN----------------------AQGEYYI-TDVIGI 203 (250)
T ss_dssp CEEEEECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCS----------------------TTCSCCG-GGHHHH
T ss_pred EEEEeeccccccccccccceeeeeeeecchHHHHHHHHHhccCc----------------------chhhHHH-hHHHHH
Confidence 89988887643 2467889999999986554 333221110 0111112 677777
Q ss_pred ccCCC-ceEEEeecceeee--cCCccchhhcchHHHhhh
Q 015225 239 LAGKK-QLYTYETMDFWEQ--IKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 239 l~~~~-~v~~~~~~~~~~~--I~t~~d~~~a~~~~l~~~ 274 (411)
+++.+ +|.++..+++|.+ |+|++|+..|+..+.++.
T Consensus 204 ~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~~ 242 (250)
T d1g97a2 204 FRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRI 242 (250)
T ss_dssp HHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHHH
Confidence 77665 8999999999866 789999999877766554
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=5.5e-23 Score=184.70 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=162.8
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
..|++|||||| .|+||+| .+||||+||+|+|||+|+|+.|..+ ++++|+|++++..+.+.++... ...
T Consensus 1 ~~MkvIILAAG--~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~-~~~~iiiv~~~~~~~~~~~~~~------~~~ 68 (248)
T d2oi6a2 1 NAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLVYGHGGDLLKQALKD------DNL 68 (248)
T ss_dssp CCEEEEEECCS--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCHHHHHHHCCC------TTE
T ss_pred CCceEEEECCC--CCCCCCC---CCCeeeEEECChhHHHHHHHHHHHc-CCcEEEeccCcccceeeeeccc------ccc
Confidence 36999999999 9999998 7899999999999999999999997 9999999999887766655433 344
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
.++.+....|++++++.+.+.+.. +.++++..+|.++..........+.......+++.... .++..++.+..+
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 142 (248)
T d2oi6a2 69 NWVLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKL--DDPTGYGRITRE-- 142 (248)
T ss_dssp EEEECSSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEEC--SCCTTSCEEEEE--
T ss_pred cccccccCcccHHHHHhhhhhhcc--ccceeeecCccccccchhHHHHHHHhhccccceeEEEe--cCCccccccccc--
Confidence 556667788999999999887752 56788888888764321111111223344555565655 677778877776
Q ss_pred CCceeEEecc-C---CCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEK-P---ETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~-~---~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
+++...+.+. + ......+..+|.|.|+...+ +.+....... .. +.+.+ ++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~------------------~e~~l-td~~ 199 (248)
T d2oi6a2 143 NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNN----AQ------------------GEYYI-TDII 199 (248)
T ss_dssp TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCS----TT------------------CSCCT-THHH
T ss_pred cCccceeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccc----cc------------------hhhhh-hHHH
Confidence 5555555432 2 23345567889999998655 4443322111 11 11223 7888
Q ss_pred hcccCCC-ceEEEeecceee--ecCCccchhhcchHHHhhh
Q 015225 237 SPLAGKK-QLYTYETMDFWE--QIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 237 ~~l~~~~-~v~~~~~~~~~~--~I~t~~d~~~a~~~~l~~~ 274 (411)
+.+++.+ ++..+...++|. .|+||+|+..|.+.+.++.
T Consensus 200 ~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~~ 240 (248)
T d2oi6a2 200 ALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQ 240 (248)
T ss_dssp HHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 8887665 889988888774 3789999999987665443
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.4e-15 Score=133.54 Aligned_cols=208 Identities=12% Similarity=0.117 Sum_probs=127.2
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+. ..||+|++|+|+|||+|+|+.+.+...+++|+|+++.... +++... ......+.++.
T Consensus 6 AIILAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~-~~~~~~~~~~~ 76 (221)
T d1vpaa_ 6 AILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKR-VFHEKVLGIVE 76 (221)
T ss_dssp EEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTT-CCCTTEEEEEE
T ss_pred EEEccCc--CcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhh---hHHHhh-hcccccccccc
Confidence 8999999 9999975 7899999999999999999999886578999998875442 222221 11223445544
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
. ..+...++..+...+.....+.++++.||.++ ...+..+++...+.... + ...+. .+ ..+..+ .+
T Consensus 77 ~--~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~-~-~~~~~--~d----~~~~~~--~~ 144 (221)
T d1vpaa_ 77 G--GDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA-T-LALKN--SD----ALVRVE--ND 144 (221)
T ss_dssp C--CSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE-E-EEEEC--CS----EEEEEE--TT
T ss_pred c--cccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc-c-ccccc--cc----eeEeec--Cc
Confidence 2 23456777777777655557889999999986 44578888877654433 2 22222 11 122222 23
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC-
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK- 242 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~- 242 (411)
+...+.+. ..+...+-+.|+.+.+....+. ...+ +|..+.+...
T Consensus 145 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~-----------------------------~~~~-tD~~~l~~~~g 189 (221)
T d1vpaa_ 145 RIEYIPRK-----GVYRILTPQAFSYEILKKAHEN-----------------------------GGEW-ADDTEPVQKLG 189 (221)
T ss_dssp EEEEECCT-----TEEEEEEEEEEEHHHHHHHHTT-----------------------------CCCC-SSSHHHHHTTT
T ss_pred cceecchH-----HHHHhhhhhhhhHHHHHHHHHh-----------------------------CCCC-ccHHHHHHHcC
Confidence 33222111 2234456666766555433221 0112 4444444433
Q ss_pred CceEEEeecceeeecCCccchhhcchH
Q 015225 243 KQLYTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 243 ~~v~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
.++..+........|+||+|+..|...
T Consensus 190 ~~v~~i~g~~~n~kI~t~eDl~~Ae~l 216 (221)
T d1vpaa_ 190 VKIALVEGDPLCFKVTFKEDLELARII 216 (221)
T ss_dssp CCCEEEECCGGGCCCCSTTHHHHHHHH
T ss_pred CceEEEecChhhcCCCCHHHHHHHHHH
Confidence 467766644444568999998777543
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.65 E-value=1.4e-15 Score=134.05 Aligned_cols=126 Identities=21% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCc-eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEK-VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~-~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++ +.+|||||| .|+||.. ..||+|++++|+|||+|+++.+.+++.+++|+|+++.... +++.+....++.
T Consensus 1 M~k~i~~IIlAaG--~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~~~~~ 72 (226)
T d1w77a1 1 MEKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR---DIFEEYEESIDV 72 (226)
T ss_dssp CTTCEEEEEECCC------------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGT---HHHHTTTTSCSS
T ss_pred CCCceEEEEeCCc--cCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhh---hhhhcccccccc
Confidence 654 789999999 9999986 7899999999999999999999987678999999875432 233332233455
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
.+.++. .+....++++.++..+.. ..+.+++..||.++ ...+..+++.+.+.+..
T Consensus 73 ~~~~~~--gg~~r~~sv~~~l~~~~~-~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~ 129 (226)
T d1w77a1 73 DLRFAI--PGKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA 129 (226)
T ss_dssp EEEEEC--CCSSHHHHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE
T ss_pred cccccc--ccchhhhhhhhhHhhhcc-ccccceecccccccccHHHhhhhhhhhhccCce
Confidence 566654 223357888888887642 35788888999986 44578888877666544
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.2e-15 Score=134.31 Aligned_cols=216 Identities=14% Similarity=0.142 Sum_probs=129.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|++.||||||| .|+||.. ..||+|+|++|+|||+|+++.+.+++++++|+|++++....+.+.... ....+
T Consensus 2 M~i~AIILAaG--~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~----~~~~v 72 (225)
T d1i52a_ 2 LDVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLA----NHPQI 72 (225)
T ss_dssp CCEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGG----GCTTE
T ss_pred CCEEEEEeCCC--cceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhc----ccccc
Confidence 56889999999 9999986 889999999999999999999988667899999987655433332222 12244
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.+.... .+..++++.+...+. +.+.+++..+|.++ ...+..++....... ...+...+. .+... ....
T Consensus 73 ~~~~~~--~~~~~sv~~~~~~~~--~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~-~~~v~~~~~--~d~~~---~~~~ 142 (225)
T d1i52a_ 73 TVVDGG--DERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSR-TGGILAAPV--RDTMK---RAEP 142 (225)
T ss_dssp EEEECC--SSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCS-SCEEEEEEC--CSCEE---EECT
T ss_pred ccccCC--cchhHHHHhhhcccC--ccceeeeeccCCCCCCHHHHHHHHhhhhhcc-cccccccce--eeccc---hhcc
Confidence 544432 356788888888775 24667777898875 334566665554443 334444443 23211 1112
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
..+......++.. .....+.+.|..+.+ +.+.+.... .+.+ +|....
T Consensus 143 -~~~~~~~~~~~~~----~~~~~~~~~f~~~~l~~~~~~~~~~--------------------------~~~~-tD~~~l 190 (225)
T d1i52a_ 143 -GKNAIAHTVDRNG----LWHALTPQFFPRELLHDCLTRALNE--------------------------GATI-TDEASA 190 (225)
T ss_dssp -TSSSEEEEECCTT----CEEEEEEEEEEHHHHHHHHHHHHHT--------------------------TCCC-CSHHHH
T ss_pred -cccccccccchHH----HHHHhhhhhhhhHHHHHHHHHHHhc--------------------------CCCC-CcHHHH
Confidence 2333333332211 112235566666544 333332211 1112 554444
Q ss_pred ccC-CCceEEEeecceeeecCCccchhhcch
Q 015225 239 LAG-KKQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 239 l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
+.. +.++..+..+..-..|+||+|+..|+.
T Consensus 191 ~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~ 221 (225)
T d1i52a_ 191 LEYCGFHPQLVEGRADNIKVTRPEDLALAEF 221 (225)
T ss_dssp HHHTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred HHHCCCceEEEecCccccCcCCHHHHHHHHH
Confidence 443 447766654333345899999988854
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.61 E-value=7.2e-15 Score=127.51 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=90.4
Q ss_pred CCcEEcCCcEECCCCEECCCCEEC----CCcEECCCcEECCCcEEE------------------------eeEECCCCEE
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIG----PNVSISANVRVGAGVRLI------------------------SCIVLDDVEI 340 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~----~~~~ig~~~~i~~~~~i~------------------------~~~i~~~~~i 340 (411)
+++.+.+++.||++++|+++|+|+ .++.||++|.|+++|+|. ++.||++|.|
T Consensus 33 p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~I 112 (210)
T d1qrea_ 33 PQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSL 112 (210)
T ss_dssp TTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEE
T ss_pred CCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeecccccc
Confidence 456666677889999999999993 478899999999999994 3889999999
Q ss_pred CCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCC
Q 015225 341 KENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVS 404 (411)
Q Consensus 341 ~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~ 404 (411)
|+++.|. ++.||+++.||.++.+.+ +.||++|.|+.++.+.++++++|+.|+.+
T Consensus 113 G~~~~i~g~~~IGd~~~IG~gs~i~~----------~~IG~~~vIg~~svv~g~~i~~g~~I~~g 167 (210)
T d1qrea_ 113 AHQSQVHGPAAVGDDTFIGMQAFVFK----------SKVGNNCVLEPRSAAIGVTIPDGRYIPAG 167 (210)
T ss_dssp CTTCEEEEEEEECTTCEECTTCEEEE----------EEECTTCEECTTCEEESCEECTTBEECTT
T ss_pred ccccccccCCcccCCcEeeCCccccc----------cccccCcEEecCcEecCcEeCCCcEECCC
Confidence 9999997 789999999999999987 78999999999998887777777776653
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.59 E-value=4.4e-15 Score=130.80 Aligned_cols=213 Identities=15% Similarity=0.185 Sum_probs=116.2
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++..||||||| .|+||.. ..||+|++|+|+|||+|+++.+.+.+.++.|+|+++.+.. +.+.+... .....
T Consensus 2 ~K~iAIIlAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~-~~~~~~~~---~~~~~ 72 (226)
T d1vgwa_ 2 RKNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT-FADKVQTA---FPQVR 72 (226)
T ss_dssp CCEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCS-THHHHHHH---CTTSE
T ss_pred CceEEEEeCCC--CcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhh-hhhhhccc---cccee
Confidence 35669999999 9999975 7899999999999999999999987567888888875543 33444432 22222
Q ss_pred EEeeCCCCCCChHHHHHHHHHhh----ccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeE
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIM----EENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGE 155 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~----~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 155 (411)
.+.. .......++..++..+. ....+.+++.+||.++ ...+..+++.+.......++ ..+. .+ ..
T Consensus 73 ~~~~--g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~~~--~~----~~ 143 (226)
T d1vgwa_ 73 VWKN--GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AVPV--AD----TL 143 (226)
T ss_dssp EECC--CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EEEC--CS----CE
T ss_pred eccc--cccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee-cccc--cc----cc
Confidence 2222 22233555555554442 1235678888999875 34588888888776666443 3333 22 22
Q ss_pred EEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 156 LIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
... +++.+....++... .... .-..|..+.+ +.+... ....+ +|
T Consensus 144 ~~~--~~~~i~~~~~r~~~---~~~~-~p~~f~~~~l~~~~~~~----------------------------~~~~~-tD 188 (226)
T d1vgwa_ 144 KRA--ESGQISATVDRSGL---WQAQ-TPQLFQAGLLHRALAAE----------------------------NLGGI-TD 188 (226)
T ss_dssp EEE--SSSBEEEEECCTTE---EEEE-EEEEEEHHHHHHHHHC--------------------------------CC-CS
T ss_pred eec--cCCeEEeccchHHH---HHHH-hhhcccHHHHHHHHHHh----------------------------hcCCC-Cc
Confidence 233 36677666554221 1111 1234444333 222211 11112 44
Q ss_pred hhhcccC-CCceEEEeecceeeecCCccchhhcc
Q 015225 235 ILSPLAG-KKQLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 235 ~l~~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
....+.+ +.++..+..+.....|+||+|+..|.
T Consensus 189 ~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae 222 (226)
T d1vgwa_ 189 EASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVR 222 (226)
T ss_dssp HHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHH
T ss_pred HHHHHHHcCCceEEEECCccccCcCCHHHHHHHH
Confidence 4333332 44777766554456799999988774
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.2e-15 Score=109.66 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=64.1
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
....+.+++.||+++.|+++++|.+++.||+||+||++|.|.+|+|+++|+|+++|.|.+|+|++++.||++
T Consensus 7 ~~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf 78 (78)
T d1fxja1 7 ARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF 78 (78)
T ss_dssp GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred CeEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence 356678889999999999999999899999999999999999999999999999999999999999888874
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.58 E-value=1.5e-14 Score=129.86 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=73.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------------------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL--------------------- 347 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------- 347 (411)
++.+.+.+.|++++.|+++|+|+++++||++|+|+++|+|. ++.||++|.|.++++|.
T Consensus 6 sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~~~ 85 (259)
T d1j2za_ 6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDN 85 (259)
T ss_dssp TCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEecccc
Confidence 45566666666666666666666666666666666666665 56666666666666551
Q ss_pred -----------------eeEECCCCEECCCcEEecCCc--------CCcc-cceeEECCCCEECCCcEE-------cceE
Q 015225 348 -----------------NSIIGWKSSLGRWARVQGNGD--------YNAK-LGITILGEAVTVEDEVVV-------INSI 394 (411)
Q Consensus 348 -----------------~s~i~~~~~ig~~~~i~~~~~--------~~~~-~~~~~i~~~~~i~~~~~v-------~~~~ 394 (411)
+++||+++.|+.++.+..+.. +... .+.+.||++|+||.++.| .+|+
T Consensus 86 ~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~ 165 (259)
T d1j2za_ 86 LIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCM 165 (259)
T ss_dssp EECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCE
T ss_pred ccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEecccee
Confidence 133333333333333322111 1111 134777777777777766 6899
Q ss_pred EcCCCEEcCCCCCccc
Q 015225 395 VLPNKVLNVSVQEEII 410 (411)
Q Consensus 395 i~~~~~v~~~~~~~~~ 410 (411)
|++++.|++++|+..+
T Consensus 166 IgagSvV~kdVp~~~i 181 (259)
T d1j2za_ 166 IAGKSALGKDVPPYCT 181 (259)
T ss_dssp ECTTCEECSBBCTTEE
T ss_pred eeeeeeecccccccee
Confidence 9999999999988643
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.55 E-value=5.1e-14 Score=120.34 Aligned_cols=104 Identities=25% Similarity=0.218 Sum_probs=60.4
Q ss_pred EEcCCcEECCCCEEC--CCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 292 TIAGDVYIHPSAKVH--PTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
.+++.++|++++.|+ +++.|+++++|+++|.||++|.|. +++|+++|.||++|.+. .++.++.++.|+++
T Consensus 76 ~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~-----~~~~i~g~v~Ig~~-- 148 (193)
T d3bswa1 76 LIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVS-----VGAKCAGNVKIGKN-- 148 (193)
T ss_dssp EECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC-----TTCEECTTCEECTT--
T ss_pred ecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecccccccc-----ccccccccceeecc--
Confidence 455566666666663 356666666666666666666664 45555555555555544 33333333333333
Q ss_pred CCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
|.||.++.|.+++.| .+|+|++|++|.+++|+..
T Consensus 149 -------~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~ 183 (193)
T d3bswa1 149 -------CFLGINSCVLPNLSLADDSILGGGATLVKNQDEKG 183 (193)
T ss_dssp -------CEECTTCEECTTCEECTTCEECTTCEECSCBCSCC
T ss_pred -------ccCCceeeEcCCeEECCCCEECCCCEECcCCCCCc
Confidence 444445555555555 5688888888888887654
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.54 E-value=6.3e-14 Score=120.23 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=87.2
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc-
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD- 368 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~- 368 (411)
.+++.+++.||++++|+++|+|++++.||++|+|+++|.|.++.||++|.|.. ..+....+++++.||+++.+..+..
T Consensus 8 s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~-~~i~~~~~g~~~~Ig~~~~i~~~~~i 86 (196)
T d1g97a1 8 ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN-SMIEESSVADGVIVGPYAHIRPNSSL 86 (196)
T ss_dssp GCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS-CEEESCEECTTCEECSSCEECSSCEE
T ss_pred eEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc-cceeeccccCcceeecceeccccccc
Confidence 45788899999999999999999999999999999999999999998888764 3344444444444443333322100
Q ss_pred ------------------------------------------------CC-cccceeEECCCCEECCCcEE-------cc
Q 015225 369 ------------------------------------------------YN-AKLGITILGEAVTVEDEVVV-------IN 392 (411)
Q Consensus 369 ------------------------------------------------~~-~~~~~~~i~~~~~i~~~~~v-------~~ 392 (411)
+. ...+.++||+++++|.++.+ .+
T Consensus 87 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~ 166 (196)
T d1g97a1 87 GAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDN 166 (196)
T ss_dssp CTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTT
T ss_pred ccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCC
Confidence 00 01145778888888888765 68
Q ss_pred eEEcCCCEEcCCCCCccc
Q 015225 393 SIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 393 ~~i~~~~~v~~~~~~~~~ 410 (411)
++|++|++|++++|+-.+
T Consensus 167 s~IgagsvVtkdvp~~~i 184 (196)
T d1g97a1 167 SLVGAGSTITKDVPADAI 184 (196)
T ss_dssp CEECTTCEECSCBCTTCE
T ss_pred CEECCCCEECcCcCCCCE
Confidence 999999999999987654
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.54 E-value=4.2e-14 Score=126.84 Aligned_cols=121 Identities=19% Similarity=0.193 Sum_probs=68.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-e------------------------------eEECCCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-S------------------------------CIVLDDV 338 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~------------------------------~~i~~~~ 338 (411)
++.+.+++.||+++.|+|+|+|++++.||++|.|+++|+|. + ..||+++
T Consensus 11 ~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG~~v 90 (262)
T d2jf2a1 11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRN 90 (262)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEECCee
Confidence 34444445555555555555555555555555555555553 1 3566666
Q ss_pred EECCCcEEEe--------eEECCCCEECCC------cEEecCCc--CCccc-ceeEECCCCEECCCcEE-------cceE
Q 015225 339 EIKENAVVLN--------SIIGWKSSLGRW------ARVQGNGD--YNAKL-GITILGEAVTVEDEVVV-------INSI 394 (411)
Q Consensus 339 ~i~~~~~i~~--------s~i~~~~~ig~~------~~i~~~~~--~~~~~-~~~~i~~~~~i~~~~~v-------~~~~ 394 (411)
.|+++|.+.. +.||+++.|..+ |.++.+.- ++..+ +.+.||++|+||.++.+ .+++
T Consensus 91 ~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~ 170 (262)
T d2jf2a1 91 RIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVM 170 (262)
T ss_dssp EECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred eecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhce
Confidence 6666666642 334433333332 22222111 11112 44778888888877766 6899
Q ss_pred EcCCCEEcCCCCCccc
Q 015225 395 VLPNKVLNVSVQEEII 410 (411)
Q Consensus 395 i~~~~~v~~~~~~~~~ 410 (411)
|+.++.|++++|+..+
T Consensus 171 igagS~Vtkdvp~~~~ 186 (262)
T d2jf2a1 171 VGGCSGVAQDVPPYVI 186 (262)
T ss_dssp ECSSCEECSBBCTTEE
T ss_pred eeccceEeecCCcccc
Confidence 9999999999998654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.54 E-value=3.8e-14 Score=122.90 Aligned_cols=98 Identities=28% Similarity=0.340 Sum_probs=83.6
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEE-----------------------
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVL----------------------- 347 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~----------------------- 347 (411)
...|+++++|+|+|+|.+++.||++|.||++|+|. +..||++|.|+++|+|.
T Consensus 22 ~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~ 101 (210)
T d1qrea_ 22 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE 101 (210)
T ss_dssp CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred CCccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccc
Confidence 34788889999999988899999999999999994 57899999999999983
Q ss_pred -eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 348 -NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 348 -~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
.++||++|.||.++.|.++ +.||++++||.+++|.++.||.+++|.
T Consensus 102 ~~~~IG~~v~IG~~~~i~g~---------~~IGd~~~IG~gs~i~~~~IG~~~vIg 148 (210)
T d1qrea_ 102 YAVYIGNNVSLAHQSQVHGP---------AAVGDDTFIGMQAFVFKSKVGNNCVLE 148 (210)
T ss_dssp ESEEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEEC
T ss_pred cceeeccccccccccccccC---------CcccCCcEeeCCccccccccccCcEEe
Confidence 4789999999999999876 999999999999988555555555543
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.50 E-value=2.9e-13 Score=120.33 Aligned_cols=222 Identities=15% Similarity=0.127 Sum_probs=144.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
..|||+|.| .++|+.. |+|.+|+|+|||+|+++.+.+. ++++|+|.+... .+.++..+ +|.++.+
T Consensus 2 ~i~iIpAR~--gSkrip~------KnL~~i~GkpLI~~~i~~a~~s-~i~~iiVsTd~~--~i~~~~~~----~g~~v~~ 66 (246)
T d1vh1a_ 2 FVVIIPARY--ASTRLPG------KPLVDINGKPMIVHVLERARES-GAERIIVATDHE--DVARAVEA----AGGEVCM 66 (246)
T ss_dssp CEEEEECCC--CCC--CC------TTTCEETTEEHHHHHHHHHHHT-TCSEEEEEESCH--HHHHHHHH----TTCEEEE
T ss_pred EEEEEecCC--CCcCCCC------chhhhcCCccHHHHHHHHHHHc-CCCcEEEEecCc--cccchhhc----cccccee
Confidence 468999999 9999932 9999999999999999999996 899999988633 45565554 4666776
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccce-----eEE
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQF-----GEL 156 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----g~v 156 (411)
.......++ +.+..+.........+.++.+.+|.++ ..++..+++.+.....+......+. .....+ -.+
T Consensus 67 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vk~ 143 (246)
T d1vh1a_ 67 TRADHQSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI--HNAEEAFNPNAVKV 143 (246)
T ss_dssp CC-----CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEEC--CCHHHHTCTTSCEE
T ss_pred ecccccccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccc--cchhcccCCCccee
Confidence 665544444 444445554443345788889999986 4568888888888877766666655 222221 234
Q ss_pred EEcCCCCceeEEeccCC-------------CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccC
Q 015225 157 IADPNTKELLHYTEKPE-------------TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRT 223 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~-------------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (411)
..+ .++++..+.+.+. .....+...|+|+|+++.+...........+
T Consensus 144 v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E------------------- 203 (246)
T d1vh1a_ 144 VLD-AEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLE------------------- 203 (246)
T ss_dssp EEC-TTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHH-------------------
T ss_pred eec-ccCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHH-------------------
Confidence 556 6788888775431 1234556789999999988765543221100
Q ss_pred CCCceeeeccchhhcccCCCceEEEeecc-eeeecCCccchhhcch
Q 015225 224 LPVDFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSS 268 (411)
Q Consensus 224 ~~~~~~~l~~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~ 268 (411)
..+. -+.++.+-.+.++.++.... ...+|||++|+..|..
T Consensus 204 ---~~e~--le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k 244 (246)
T d1vh1a_ 204 ---HIEM--LEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA 244 (246)
T ss_dssp ---HHHT--CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred ---HHHh--HHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHh
Confidence 0001 23344343455888877665 4679999999987754
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.49 E-value=6.3e-13 Score=118.00 Aligned_cols=230 Identities=16% Similarity=0.197 Sum_probs=144.7
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++..|||+|.| .++||.. |+|++++|+|||+|+++.+.+...+++|+|++.... +.+.... ++.++
T Consensus 1 ~k~i~iIpAR~--~SkRl~~------Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~--i~~~~~~----~~~~~ 66 (245)
T d1h7ea_ 1 SKAVIVIPARY--GSSRLPG------KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPR--VEQAVQA----FGGKA 66 (245)
T ss_dssp CCEEEEEECCS--CCSSSTT------GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHH--HHHHHHH----TTCEE
T ss_pred CCEEEEEcCCC--CCcCCCC------ccccccCCccHHHHHHHHHHhCCCCCeEEEeccccc--chhhhhh----cCceE
Confidence 35789999999 9999843 999999999999999999988778999998876433 3444433 34444
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcc--cccc-eeEE
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAE--SAHQ-FGEL 156 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~g~v 156 (411)
.+.. ....++.+.+..+.+.+. .+.++.+.+|.++ ...+..+++.+................. .... ....
T Consensus 67 ~~~~-~~~~~~~~~~~~~~~~~~---~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~ 142 (245)
T d1h7ea_ 67 IMTR-NDHESGTDRLVEVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKV 142 (245)
T ss_dssp EECC-SCCSSHHHHHHHHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEE
T ss_pred EEec-CccccccHHHHHHHHhcC---CCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceee
Confidence 4433 233345566666667665 5778889999986 3457888888776654433332222101 1111 1123
Q ss_pred EEcCCCCceeEEeccCCC------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceee
Q 015225 157 IADPNTKELLHYTEKPET------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVR 230 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~~------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (411)
... ..+....+...+.. ........|+|.|+++.+..+......... ....
T Consensus 143 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e----------------------~~e~ 199 (245)
T d1h7ea_ 143 VVN-TRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPE----------------------QAES 199 (245)
T ss_dssp EEC-TTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHH----------------------HHHT
T ss_pred ccc-hhhhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhh----------------------hhhh
Confidence 333 45556666544321 223455679999999988765542211000 0001
Q ss_pred eccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 231 LDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 231 l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
-+.++.+-.+.++.++..++.+.+|+|++|+..|...+.++.
T Consensus 200 --ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~ 241 (245)
T d1h7ea_ 200 --LEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL 241 (245)
T ss_dssp --CTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhhh
Confidence 123443445668988888877889999999999976555443
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.47 E-value=8.1e-13 Score=117.98 Aligned_cols=226 Identities=14% Similarity=0.143 Sum_probs=145.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
..+||+|.| .++|+.. |.|.+|+|+|||+|+++.+.+. ++++|+|++... .+.+...+ ++..+.+
T Consensus 2 ~~~iIpAR~--gSkRlp~------Knl~~i~GkpLI~~~i~~a~~s-~i~~IiVsTd~~--~i~~~~~~----~~~~~~~ 66 (255)
T d1vica_ 2 FTVIIPARF--ASSRLPG------KPLADIKGKPMIQHVFEKALQS-GASRVIIATDNE--NVADVAKS----FGAEVCM 66 (255)
T ss_dssp CEEEEECCC--CCSSSTT------GGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESCH--HHHHHHHH----TTCEEEE
T ss_pred EEEEEecCC--CCCCCCC------chhhhhCCcCHHHHHHHHHHHC-CCCeEEEEcCCc--ccchhhhh----hccccce
Confidence 468999999 8999832 9999999999999999999996 899998887543 34444443 5666777
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcc---cccceeEEEE
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAE---SAHQFGELIA 158 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~ 158 (411)
.......|+..+.. +.+.....+.+.++.+.||.++ ...+..+++.+.......+......... ..........
T Consensus 67 ~~~~~~~~~~~~~~-~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 145 (255)
T d1vica_ 67 TSVNHNSGTERLAE-VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT 145 (255)
T ss_dssp CCCSSCCHHHHHHH-HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE
T ss_pred eeeccCCcchhhHH-HHHHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeee
Confidence 76665555544444 3333333345678888999986 4458888888888777766555554211 1122233455
Q ss_pred cCCCCceeEEeccCC-----------------CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcc
Q 015225 159 DPNTKELLHYTEKPE-----------------TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSAT 221 (411)
Q Consensus 159 d~~~~~v~~~~e~~~-----------------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (411)
+ +.+.+..+.+.+. .........|+|+|++..+.......+....
T Consensus 146 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le----------------- 207 (255)
T d1vica_ 146 D-KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLE----------------- 207 (255)
T ss_dssp C-TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHH-----------------
T ss_pred c-cCCcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhH-----------------
Confidence 5 5777777765431 1223445689999999887665543211000
Q ss_pred cCCCCceeeeccchhhcccCCCceEEEeecc-eeeecCCccchhhcchHH
Q 015225 222 RTLPVDFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 222 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~~~ 270 (411)
..+.+ +.++.+..+.++.++.... .+.+|||++|+..|...+
T Consensus 208 -----~~e~l--e~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~il 250 (255)
T d1vica_ 208 -----NLEKL--EQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAIL 250 (255)
T ss_dssp -----HHHTC--TTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHH
T ss_pred -----HHHhH--HHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHH
Confidence 00001 1223333455787776655 477999999999986544
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=3.4e-14 Score=125.35 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=88.9
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|+..||||||| +|+||++++ ..||+|+||+|+|||+|+++.+.++ +++++++++++.... ...
T Consensus 1 M~~~avIlA~G--~~~r~~r~g-~~~K~L~~i~Gkpli~~~~~~l~~~-~~~~vvv~~~~~~~~-------------~~~ 63 (231)
T d2dpwa1 1 MRPSAIVLAGG--KEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAA-GLSPVYVGENPGLVP-------------APA 63 (231)
T ss_dssp CCCEEEEECCC--BCSGGGTTT-CSBGGGSEETTEETHHHHHHHHHHT-TCEEEEESCCSSCSS-------------CCS
T ss_pred CCceEEEECCC--CCCCCCCCC-CCCceeeEECCeeHHHHHHHHHHhc-CCCeEEeeeeccccc-------------eee
Confidence 45889999999 999999877 3489999999999999999999997 899998887654311 111
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEe
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
.. .....|..+++..+++.+. +++++++||.++ ...++.+++.+. +.++.+.+.+
T Consensus 64 ~~--~~~~~~~~~~v~~al~~~~----~~~lv~~~D~P~i~~~~i~~l~~~~~--~~~~~~~~~~ 120 (231)
T d2dpwa1 64 LT--LPDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLDKAP--EAALVYPIVP 120 (231)
T ss_dssp EE--ECCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHHHCC--SCSEEEEEEE
T ss_pred ee--cccchHHHHHHHHHHHhhc----CceEEeeCCCccCCHHHHHHHHHHhh--hcCceEEEEe
Confidence 11 2345688899999988774 789999999975 445788877653 3344444444
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.2e-13 Score=97.66 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=61.2
Q ss_pred EECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 310 KIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 310 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
.|.+++.||++|.|++++.|. +++||++|.||++|.|.+|+|++++.|++++.+.+ |+||++|.||+
T Consensus 10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~----------~~Ig~~~~IGP 77 (78)
T d1fxja1 10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED----------ANLAAACTIGP 77 (78)
T ss_dssp EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEES----------EEECTTCEESC
T ss_pred EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEEC----------CEECCCCEECc
Confidence 466778888999999999998 68899999999999999999999999999999987 99999999986
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.41 E-value=1.5e-12 Score=111.10 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=91.2
Q ss_pred CCcEEcCCcEE--CCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEe
Q 015225 289 TSATIAGDVYI--HPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 289 ~~~~~~~~~~i--~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
+.+.+.+++.| ++++.|+++|+|++++.||++|.|+.++.|. ++.|+++|.++.++.+. ++.|+++|.||.++.|.
T Consensus 79 p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~ 158 (193)
T d3bswa1 79 KSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL 158 (193)
T ss_dssp TTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEc
Confidence 36778888888 4478899999999999999999999999997 79999999999999998 69999999999999999
Q ss_pred cCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 365 GNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 365 ~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
++ +.||+++.|++|++|... +.+++++-.
T Consensus 159 ~~---------v~Ig~~~~IgagsvV~~d-v~~~~~~~G 187 (193)
T d3bswa1 159 PN---------LSLADDSILGGGATLVKN-QDEKGVFVG 187 (193)
T ss_dssp TT---------CEECTTCEECTTCEECSC-BCSCCEECC
T ss_pred CC---------eEECCCCEECCCCEECcC-CCCCcEEEE
Confidence 98 999999999999999655 467776643
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.40 E-value=9e-13 Score=113.32 Aligned_cols=122 Identities=13% Similarity=0.209 Sum_probs=88.5
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+.....+++|+|+++. .+ ++.. +...+.
T Consensus 1 ~is~IILAaG--~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~~~----~~~~~~ 66 (205)
T d1w55a1 1 EMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN-IT----YMKK----FTKNYE 66 (205)
T ss_dssp CEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC-HH----HHHT----TCSSSE
T ss_pred CeEEEEeCCc--cCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc-cc----cccc----cccccc
Confidence 3679999999 9999986 7899999999999999999999987567888777653 22 2222 223345
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
++. .+.....|++.+++.++ .+.+++..||.++ ...+..+++.+.+ .++.+.+.+.
T Consensus 67 ~v~--Gg~~r~~Sv~~gl~~~~---~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~~ 124 (205)
T d1w55a1 67 FIE--GGDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALKV 124 (205)
T ss_dssp EEE--CCSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEECC
T ss_pred ccc--cccchhhhhhhhhhhhh---hcceeeeccCcccCcHHHHHHHHhhhhc--cccccccccc
Confidence 554 23345788888888875 5778889999986 3447788776543 3445555554
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.40 E-value=1.8e-12 Score=108.67 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=63.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-----eEECCCCEECCCcEEEeeEECCCCEECCCc
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-----CIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~ 361 (411)
.+.+.+++.||+++.|+++|+|++. +.||+++.+++++.+.. ++|++++.++.++.+.++.|++++.||.++
T Consensus 24 ~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~ig~~~ 103 (172)
T d1xhda_ 24 YVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGS 103 (172)
T ss_dssp TCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTC
T ss_pred CCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEEeccc
Confidence 3344444444444444444444321 35555555555555542 566666666666666666777777777777
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
.+..+ +.||++|.|+++++| ++..|++++++.
T Consensus 104 ~i~~g---------v~IG~~~~IgagsvV~~~~~i~~~~v~~ 136 (172)
T d1xhda_ 104 IILDG---------AEIGEGAFIGAGSLVSQGKKIPPNTLAF 136 (172)
T ss_dssp EECTT---------CEECTTCEECTTCEECTTCEECTTEEEE
T ss_pred EeeCC---------cEEcCcccccceEEEeeCeEECCCeEEE
Confidence 77776 777777777777777 356677776663
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=1e-12 Score=110.23 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEE----------------------e
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVL----------------------N 348 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~----------------------~ 348 (411)
..+.||++++|+++|+|.+++.||++|.||++|.|. ...|++++.++.++.+. .
T Consensus 9 ~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
T d1v3wa_ 9 KKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG 88 (173)
T ss_dssp BCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES
T ss_pred CCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeee
Confidence 345778888888888888888888888888888885 45677777777776653 3
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.|++++.||.++.|..+ +.||++|.|+++++| +++.|+|++++.
T Consensus 89 ~~Ig~~~~ig~~~~i~~g---------v~Ig~~~vIgagsvV~~~~~i~~~~iv~ 134 (173)
T d1v3wa_ 89 AKVGNYVIIGISSVILDG---------AKIGDHVIIGAGAVVPPNKEIPDYSLVL 134 (173)
T ss_dssp CEECSSEEECTTCEECTT---------CEECSSEEECTTCEECTTCEECTTEEEE
T ss_pred eecCCcccccceeeecCC---------EEEcceeEEcCCcEEeCCeEeCCCCEEc
Confidence 566666666666666666 666666666666666 356666666654
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=5e-13 Score=113.70 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=78.6
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|.++.||||||| +|+||+ ..||+|++++|+|||+|+++.+... ..+++|+++.+.+... ..+..
T Consensus 1 M~~i~~iILAgG--~ssRmG----~~~K~ll~~~g~~ll~~~l~~l~~~--~~~ivv~~~~~~~~~~--------~~~~~ 64 (188)
T d1e5ka_ 1 MTTITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMTQ--LSHVVVNANRHQEIYQ--------ASGLK 64 (188)
T ss_dssp CCSEEEEEECCC--CCSSSC----SSCGGGSEETTEEHHHHHHHHHHHH--CSCEEEECSSSHHHHH--------TTSCC
T ss_pred CCceeEEEEcCC--CCcCCC----CCCcccCEECCEehhHHHHhhhccc--ccccccccCccHHhhh--------hcCCC
Confidence 899999999999 999996 2489999999999999999999885 6678877766543221 12333
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCC-hHHHHH
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFP-LPDLLE 129 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~-l~~~l~ 129 (411)
+.........+...++..+..... .+.+++++||.++ +.+ +..+++
T Consensus 65 v~~d~~~~~~~~~~g~~~~~~~~~---~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 65 VIEDSLADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp EECCCTTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHhcc---cceEEEeccCCCCCCHHHHHHHHH
Confidence 333222333456666666655543 6889999999986 444 555544
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.40 E-value=1.4e-12 Score=109.30 Aligned_cols=108 Identities=11% Similarity=0.157 Sum_probs=82.0
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEe-----eEECCCCEECCCcEEecC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLN-----SIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----s~i~~~~~ig~~~~i~~~ 366 (411)
.+.||++++|+++|+|.+++.||++|.|+++|+|. ...||+++.++.++.+.. +++++++.++.++.+.+.
T Consensus 12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 91 (172)
T d1xhda_ 12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSC 91 (172)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESC
T ss_pred CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccc
Confidence 45799999999999999899999999999999996 369999999999999984 688888888888877651
Q ss_pred CcCCccc-ceeEECCCCEECCCcEE-cceEEcCCCEEcC--CCCCc
Q 015225 367 GDYNAKL-GITILGEAVTVEDEVVV-INSIVLPNKVLNV--SVQEE 408 (411)
Q Consensus 367 ~~~~~~~-~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~--~~~~~ 408 (411)
++ ..+.|+.+++|..++.| .+|+|++|++|+. .+|+.
T Consensus 92 -----~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~ 132 (172)
T d1xhda_ 92 -----HIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPN 132 (172)
T ss_dssp -----EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred -----ccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCC
Confidence 00 01444444444444455 6888899999885 35554
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.2e-12 Score=112.57 Aligned_cols=121 Identities=20% Similarity=0.303 Sum_probs=81.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec----
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG---- 365 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~---- 365 (411)
...+++.+.||++++|+++|+|+++++||++|+|+++|.|.++.++.++.+...+...++.+++++.++.++.+..
T Consensus 8 ~~~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~ 87 (201)
T d2oi6a1 8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAEL 87 (201)
T ss_dssp GEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEE
T ss_pred eEEECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceee
Confidence 4578888999999999999999999999999999999999865555444444444433333333333333222211
Q ss_pred ------------------------------------------CCc----CCcccceeEECCCCEECCCcEE-------cc
Q 015225 366 ------------------------------------------NGD----YNAKLGITILGEAVTVEDEVVV-------IN 392 (411)
Q Consensus 366 ------------------------------------------~~~----~~~~~~~~~i~~~~~i~~~~~v-------~~ 392 (411)
+.. .....+.++|++++++|.++.| .+
T Consensus 88 ~~~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~ 167 (201)
T d2oi6a1 88 LEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKG 167 (201)
T ss_dssp CTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTT
T ss_pred eeeeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCC
Confidence 000 0011134788888888888866 68
Q ss_pred eEEcCCCEEcCCCCCccc
Q 015225 393 SIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 393 ~~i~~~~~v~~~~~~~~~ 410 (411)
|+|++|++|++++|+-.+
T Consensus 168 s~IgagsvV~kdVp~~si 185 (201)
T d2oi6a1 168 ATIAAGTTVTRNVGENAL 185 (201)
T ss_dssp CEECTTCEECSCBCTTCE
T ss_pred CEECCCCEEeeecCCCCE
Confidence 999999999999988654
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.1e-12 Score=112.07 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=33.3
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe
Q 015225 293 IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN 348 (411)
Q Consensus 293 ~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~ 348 (411)
++++++|+|++.+.. +.++.||++|.|+.+|+|. ...||++|.|+.+++|.+
T Consensus 57 iG~~~~I~p~~~i~~----G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~ 111 (200)
T d1krra_ 57 VGENAWVEPPVYFSY----GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 111 (200)
T ss_dssp CCSSCEECSCEEESC----STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEES
T ss_pred CCCCCEEcCCEEEec----CCccEECCccEECceEEEecCCCcEeCCCccccceeEEec
Confidence 344455555544432 2456677777777777773 467888888888888863
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.37 E-value=2.4e-12 Score=115.14 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------------e
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------------N 348 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------------~ 348 (411)
+.+.|++.++|+++++|++++.|+++++|+++|.||++|.|. +++|++++.+++++.+. +
T Consensus 4 ~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (262)
T d2jf2a1 4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR 83 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCce
Confidence 357788888888888888888888888888888888888887 68888888888777773 2
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCE
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKV 400 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~ 400 (411)
..||+++.|++++.+..+.... .+.+.||+++.+..++.| .+|.||.+++
T Consensus 84 v~IG~~v~ig~~~~i~~~~~~~--~~~T~IG~~~~i~~~~~I~h~~~IG~~~~ 134 (262)
T d2jf2a1 84 VEIGDRNRIRESVTIHRGTVQG--GGLTKVGSDNLLMINAHIAHDCTVGNRCI 134 (262)
T ss_dssp EEECSSCEECTTCEEECCCTTT--TSEEEECSSCEECTTCEECTTCEECSSCE
T ss_pred EEECCeeeecceEeccCccccC--ccceEECCCCEEecccccccccccCCCee
Confidence 5688888888888886642110 011445555444444444 3444444443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.35 E-value=1.4e-12 Score=104.75 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=57.4
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCC-------------------CEECCCcEEEeeEECCCCE
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDD-------------------VEIKENAVVLNSIIGWKSS 356 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~s~i~~~~~ 356 (411)
+++|++++.|. ++.|. +++||++|.||+++.|.++++.++ +.||++|+|.+++|+++|.
T Consensus 14 ~s~Ig~g~~I~-~~~i~-~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~ 91 (135)
T d1yp2a1 14 DSVIGEGCVIK-NCKIH-HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNAR 91 (135)
T ss_dssp EEEECTTCEEE-EEEEE-SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCE
T ss_pred eCEECCCCEEe-CCEEe-ccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCE
Confidence 46677777775 45554 788999999999999988776655 7899999999999999999
Q ss_pred ECCCcEEecC
Q 015225 357 LGRWARVQGN 366 (411)
Q Consensus 357 ig~~~~i~~~ 366 (411)
||+++.+.++
T Consensus 92 IG~g~~i~~~ 101 (135)
T d1yp2a1 92 IGDNVKIINK 101 (135)
T ss_dssp ECTTCEECCS
T ss_pred ECCCcEECCC
Confidence 9999999886
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.34 E-value=1.4e-12 Score=113.91 Aligned_cols=175 Identities=17% Similarity=0.098 Sum_probs=113.6
Q ss_pred CCc-eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEK-VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~-~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++ -.|||+|+| .++|| | .|+|++++|+|||+|+++.+.....+++|+|.+.. +.+.+.+.. ++.
T Consensus 1 m~~~~iaiIpar~--~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~--~~i~~i~~~----~~~ 66 (225)
T d1eyra_ 1 MEKQNIAVILARQ--NSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGV 66 (225)
T ss_dssp CCCEEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHH----TTC
T ss_pred CCCCEEEEEccCC--CCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeecc--chhhhhhhh----hcc
Confidence 653 458999999 89999 4 49999999999999999999997447888877653 335555544 344
Q ss_pred ceEEeeC---CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 80 PVRYLKE---DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 80 ~i~~v~~---~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
.+..... ....++...++.+.+.+.. ..+.++.+.+|.++ ..++..+++.+.+.+.+..+.+... .+...+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~--~~~~~~~ 143 (225)
T d1eyra_ 67 EVVLRPAELASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM--EHHPLKT 143 (225)
T ss_dssp EEEECCHHHHSTTCCHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC--SSCTTSC
T ss_pred eeeeeccccccccccchhhcccccccccc-ccceEEEeeccccccccccccccceeeccccccccceeecc--ccccccc
Confidence 4433221 2223344566666666542 35788899999986 4568999988887777766666654 3333333
Q ss_pred EEEEcCCCCceeEEeccC-------CCcccCcccceEEEeCHHHHHH
Q 015225 155 ELIADPNTKELLHYTEKP-------ETFVSDLINCGVYVFTPDFFTA 194 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~-------~~~~~~~~~~Giyi~~~~~~~~ 194 (411)
.+.. +++.+..+.... ........+.++|+++++.+..
T Consensus 144 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~ 188 (225)
T d1eyra_ 144 LLQI--NNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIA 188 (225)
T ss_dssp EEEC--SSSCEEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHH
T ss_pred cccc--ccccccccccccccccccccCcceeeecceeEEeeHHHHHH
Confidence 3333 355555443321 1122335577899999887643
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.31 E-value=9.8e-12 Score=107.82 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=70.8
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCCCEECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWKSSLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~ 359 (411)
++.++.++||++++++.| ++|--+++||++|.|..+++|+ .+.||++|.|+.++.|.+ ++|+++|.||+
T Consensus 108 ga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa 186 (274)
T d3tdta_ 108 PATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 186 (274)
T ss_dssp TCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECT
T ss_pred CceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEecc
Confidence 344444555555554443 3444455666666666666665 346777777777777764 36999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEEcce--------------EEcCCCEEcC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVVINS--------------IVLPNKVLNV 403 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~--------------~i~~~~~v~~ 403 (411)
+|.+..+ ++||++++|++|++|..+ .|.|+++|..
T Consensus 187 ~s~v~eg---------v~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv~ 235 (274)
T d3tdta_ 187 RSEVVEG---------VIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVS 235 (274)
T ss_dssp TCEECTT---------CEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEEEE
T ss_pred CceEecC---------EEecCceEeccceEEeccccceeccCCcEeccccCCCCEEec
Confidence 9999888 999999999999988544 5777766643
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.30 E-value=1.1e-11 Score=110.75 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=44.9
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEEC
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIG 352 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~ 352 (411)
+|++.++|+|+|.|++++.|+++++||++++||++|+|. +++|+.+|+||++|.+. ++.|+
T Consensus 2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig 64 (259)
T d1j2za_ 2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLG 64 (259)
T ss_dssp CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEES
T ss_pred cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEEC
Confidence 467777888888888878877777777777777777776 56677777777777666 56654
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=1.9e-11 Score=106.87 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=90.0
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
+++.|||+|+| .++|| | -|+|++++|+|||+|+++++.+...+++|+|.+..+ .+.+.... ++..+
T Consensus 2 ~ki~aiIpaR~--~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~--~i~~~~~~----~~~~~ 67 (228)
T d1qwja_ 2 PHLAALVLARG--GSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD--EIENVAKQ----FGAQV 67 (228)
T ss_dssp CCEEEEEECCS--CCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH--HHHHHHHH----TTCEE
T ss_pred CCEEEEeccCC--CCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchh--hhhhhhhh----cCccc
Confidence 46899999999 99999 4 499999999999999999998876688888877533 34444443 34444
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhcc-CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEE-NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~-~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
.........+....+....+.+... ..+.++++.+|.++ ..++..+++.+.+.+.+.++.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~ 134 (228)
T d1qwja_ 68 HRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR 134 (228)
T ss_dssp EECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred cccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCcccccccccc
Confidence 3333222223333333334444322 25778888999986 4568999999988888866655543
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=8.3e-12 Score=104.96 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=49.6
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcC
Q 015225 294 AGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
+.++.||++++|+++|+|. ..+.||++|.|+++|.|.. +.+++.+....++.+. .++||++|.||.+|.|..+
T Consensus 70 G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~G--- 146 (182)
T d1ocxa_ 70 GYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG--- 146 (182)
T ss_dssp STTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT---
T ss_pred ccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCc---
Confidence 4455566666666666663 3446666666666666652 3445555555555555 3456666666666555555
Q ss_pred CcccceeEECCCCEECCCcEE
Q 015225 370 NAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||+++.||+|++|
T Consensus 147 ------v~IG~~~vIgagsvV 161 (182)
T d1ocxa_ 147 ------VTIGDNVVVASGAVV 161 (182)
T ss_dssp ------CEECTTCEECTTCEE
T ss_pred ------EEECCCCEECCCCEE
Confidence 555555555555555
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=8.8e-11 Score=100.03 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=68.9
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcC
Q 015225 294 AGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
+.++.||++++|+++|+|. ..+.||++|.||+++.|.+ +...+......+..+. .++|+++|.||.+|.|..+
T Consensus 72 G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~G--- 148 (200)
T d1krra_ 72 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG--- 148 (200)
T ss_dssp STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTT---
T ss_pred CCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccc---
Confidence 3456677777777777773 4567888888888888863 4445555555555555 5678888888888888887
Q ss_pred CcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 370 NAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.||++|.|++|++|... |.|++++.
T Consensus 149 ------v~IG~~~vIgagSvV~kd-vp~~~iv~ 174 (200)
T d1krra_ 149 ------VTIGDNSVIGAGSIVTKD-IPPNVVAA 174 (200)
T ss_dssp ------CEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred ------cccCCCcEEeCCCEEeeE-cCCCcEEE
Confidence 888888888888877543 35555543
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.16 E-value=1.6e-10 Score=100.16 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=61.5
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCC--------EECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKS--------SLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~--------~ig~ 359 (411)
+.++.|++.+-.+++|++++++. ++++.-+++||++|.|. .++||+.|.||++|+|. ++.|+-.. .|++
T Consensus 102 g~RvvPga~VR~GayI~~~vVlm-ps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed 180 (274)
T d3tdta_ 102 GFRVVPPATVRQGAFIARNTVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 (274)
T ss_dssp CCEECTTCEEBTTCEECTTCEEC-SEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECT
T ss_pred CEEeCCCceeccCcEECCCcEEe-eeEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEec
Confidence 56788888888888888888776 68888888888888875 45555555555555544 33343321 2333
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSV 405 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~ 405 (411)
+ |+||.++.|-.|+.| ++++|++|+++..+.
T Consensus 181 ~---------------~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t 212 (274)
T d3tdta_ 181 N---------------CFIGARSEVVEGVIVEEGSVISMGVYLGQST 212 (274)
T ss_dssp T---------------CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred C---------------cEeccCceEecCEEecCceEeccceEEeccc
Confidence 3 333333333333333 567777777777753
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.1e-10 Score=97.82 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=58.5
Q ss_pred CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe-eEE------CCCCEECCCcEEecCCcCCcccceeEECCCCE
Q 015225 314 NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN-SII------GWKSSLGRWARVQGNGDYNAKLGITILGEAVT 383 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-s~i------~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~ 383 (411)
++.||+++.|+.+|+|. ...||++|.|+.+|.|.+ +.+ ..++.++..+.|+++ +.||.++.
T Consensus 72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~---------~~iG~~~~ 142 (182)
T d1ocxa_ 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN---------VWIGGRAV 142 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT---------CEECTTCE
T ss_pred ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECce---------EeeCceee
Confidence 44444444444444443 236888888888888873 333 344455555556555 66666666
Q ss_pred ECCCcEE-cceEEcCCCEEcCCCCCccc
Q 015225 384 VEDEVVV-INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 384 i~~~~~v-~~~~i~~~~~v~~~~~~~~~ 410 (411)
|.+|+.| .+|+|++|++|++++|+..+
T Consensus 143 I~~Gv~IG~~~vIgagsvV~kdvp~~~i 170 (182)
T d1ocxa_ 143 INPGVTIGDNVVVASGAVVTKDVPDNVV 170 (182)
T ss_dssp ECTTCEECTTCEECTTCEECSCBCSSEE
T ss_pred ccCcEEECCCCEECCCCEEccCCCCCeE
Confidence 6666667 68999999999999987654
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=2.7e-10 Score=97.01 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=35.3
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
++|++++.||.++.+.++ +.||+++.|+++++|... +.|++++-.
T Consensus 143 ~~Ig~~~~iG~~~~I~~g---------v~IG~~s~IgagsvVtkd-vp~~~i~~G 187 (196)
T d1g97a1 143 TVIGNNVFVGSNSTIIAP---------VELGDNSLVGAGSTITKD-VPADAIAIG 187 (196)
T ss_dssp EEECTTCEECTTCEEESS---------CEECTTCEECTTCEECSC-BCTTCEECC
T ss_pred eEEecCCEEeeeeEEcCC---------cEECCCCEECCCCEECcC-cCCCCEEEe
Confidence 346777778888877777 899999999999999655 677777764
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.12 E-value=5.2e-11 Score=95.26 Aligned_cols=86 Identities=9% Similarity=0.112 Sum_probs=59.5
Q ss_pred CcEECCCCEECCCCEECCCcE------------------ECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCE
Q 015225 296 DVYIHPSAKVHPTAKIGPNVS------------------ISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~------------------ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
+++||+++.|++++.|++.++ +++++.||++|.|.+++|+++|+||++|.+. ++.+.+.+.
T Consensus 30 ~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~ 109 (135)
T d1yp2a1 30 HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAAR 109 (135)
T ss_dssp SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEE
T ss_pred ccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEECCCcEECCCccccccee
Confidence 345566666666666654333 3456889999999999999999999999886 556666677
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEECCCcE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTVEDEVV 389 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ 389 (411)
+++++.+.++ .++|++++.|++|++
T Consensus 110 ~~~~~~i~~g--------~vvIg~~~~I~~g~v 134 (135)
T d1yp2a1 110 ETDGYFIKSG--------IVTVIKDALIPSGII 134 (135)
T ss_dssp GGGTEEEETT--------EEEECTTCEECTTCB
T ss_pred eCCCEEECCC--------eEEECCCCEECcCcC
Confidence 7777666654 245666666666654
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.3e-09 Score=93.08 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=39.1
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCC
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQ 406 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~ 406 (411)
+.|+++|.||.++.|..+ +.||+++.|+++++|...+ .|++.+..+.|
T Consensus 144 ~~Ig~~v~iG~~~~I~~~---------v~IG~~s~IgagsvV~kdV-p~~si~vg~~~ 191 (201)
T d2oi6a1 144 TIIGDDVFVGSDTQLVAP---------VTVGKGATIAAGTTVTRNV-GENALAISRVP 191 (201)
T ss_dssp EEECTTCEECTTCEEESS---------EEECTTCEECTTCEECSCB-CTTCEECCCCC
T ss_pred cEeCCcEEEeEeeeEcCC---------cEECCCCEECCCCEEeeec-CCCCEEEeccc
Confidence 578888888888888887 9999999999999996654 78887666655
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.97 E-value=1.5e-09 Score=95.05 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=56.6
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEE---EeeEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV---LNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i---~~s~i~~~~~ig~~~~i~~~ 366 (411)
+..+++.+.||+++.++.+ .+++||+++.||++|.| ..+++++..... ...+||++|.||.++.|.++
T Consensus 137 g~~I~~~~~Ig~g~~i~h~----~givig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~ 207 (241)
T d1ssqa_ 137 DVDIHPAAKIGHGIMFDHA----TGIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN 207 (241)
T ss_dssp SCEECTTCEECSSCEESSC----TTCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS
T ss_pred eeccccCCEEccCcccCcc----ceEEEeccceecCCeee-----cccccccccccCCCCCCCccCCCeEECCCCEEcCC
Confidence 3444444445555444431 25555555555555554 344444332211 24678888888888888887
Q ss_pred CcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.||++++||+|++|... |.|++++-
T Consensus 208 ---------v~IG~~a~IgAgsvV~kd-Vp~~~vv~ 233 (241)
T d1ssqa_ 208 ---------IEVGKYAKIGANSVVLNP-VPEYATAA 233 (241)
T ss_dssp ---------CEECTTCEECTTCEECSC-BCTTCEEE
T ss_pred ---------cEECCCCEECCCCEECCC-CCCCCEEE
Confidence 888888888888888554 46666553
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.95 E-value=4.9e-09 Score=91.60 Aligned_cols=17 Identities=24% Similarity=0.100 Sum_probs=9.3
Q ss_pred ceEEcCCCEEcCCCCCc
Q 015225 392 NSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 392 ~~~i~~~~~v~~~~~~~ 408 (411)
+++||+|++|.+++|+.
T Consensus 213 ~a~IgAgsvV~kdVp~~ 229 (241)
T d1ssqa_ 213 YAKIGANSVVLNPVPEY 229 (241)
T ss_dssp TCEECTTCEECSCBCTT
T ss_pred CCEECCCCEECCCCCCC
Confidence 45555555555555543
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.95 E-value=1.8e-10 Score=98.65 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=12.3
Q ss_pred cceEEcCCCEEcCCCCCc
Q 015225 391 INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 391 ~~~~i~~~~~v~~~~~~~ 408 (411)
.+|+|++|++|++++|+.
T Consensus 136 ~~~~IgagSvV~kdv~~~ 153 (203)
T d1mr7a_ 136 DGAIVAANSVVVKDIAPY 153 (203)
T ss_dssp TTCEECTTCEECSCBCTT
T ss_pred CCCEEecCeEEeeeCCCC
Confidence 467777777777777654
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.92 E-value=1.3e-09 Score=90.76 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEEe-----eE-----------ECCCCEECCCcEEE-e
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLIS-----CI-----------VLDDVEIKENAVVL-N 348 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~~-----~~-----------i~~~~~i~~~~~i~-~ 348 (411)
+++.+.+++.||+++.|+++|+|.+ .+.+++++.++..+.+.. .. +...+.||++|.|. +
T Consensus 21 ~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~ 100 (173)
T d1v3wa_ 21 ENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGIS 100 (173)
T ss_dssp TTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTT
T ss_pred CCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCcccccce
Confidence 3556666667777777777777752 456777777777777641 12 22234455555555 4
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++|++++.||++|.|+.+ |+|.++..|++++++
T Consensus 101 ~~i~~gv~Ig~~~vIgag---------svV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 101 SVILDGAKIGDHVIIGAG---------AVVPPNKEIPDYSLV 133 (173)
T ss_dssp CEECTTCEECSSEEECTT---------CEECTTCEECTTEEE
T ss_pred eeecCCEEEcceeEEcCC---------cEEeCCeEeCCCCEE
Confidence 555555555555555555 555555555555555
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.89 E-value=7.6e-08 Score=89.14 Aligned_cols=187 Identities=15% Similarity=0.171 Sum_probs=127.6
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhcc-----CCCCcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKR-----IPNLAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~-----~~gi~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
.++.+|+|||| .||||+- ..||.++||+ |+++++..++++.. -..+.-++..+...++.++++++++ .
T Consensus 73 ~kvavv~LaGG--~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~-~ 146 (378)
T d2icya2 73 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKY-T 146 (378)
T ss_dssp TTEEEEEEECC--BSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGG-T
T ss_pred CCEEEEEecCC--cccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHh-c
Confidence 46889999999 9999975 8899999996 77999999999863 1245544445545567888999885 4
Q ss_pred cCCcceEEeeCC------------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcCCcccCCChHH
Q 015225 76 ELKVPVRYLKED------------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCCSFPLPD 126 (411)
Q Consensus 76 ~~~~~i~~v~~~------------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~~~~l~~ 126 (411)
.++.++.+..|. .+.|.++.... .++.+....-+++.+...|.+....-..
T Consensus 147 ~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~ 226 (378)
T d2icya2 147 NSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 226 (378)
T ss_dssp TSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH
T ss_pred cCCCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchH
Confidence 456555554321 03466665543 2444544557899999999986444467
Q ss_pred HHHHHHhcCCeeEEEEEecCccccc-ceeEEE-EcCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHHhh
Q 015225 127 LLEAHKRYGGMGTMLVIKVSAESAH-QFGELI-ADPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTAIQ 196 (411)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~-~d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~l~ 196 (411)
++..|.+.++++++-+.+. ..+. .-|.+. .| ..-+++++.+.|.. ..-.+.+++.++|+-+.++.+.
T Consensus 227 ~lG~~~~~~~~~~~kvv~K--t~~dek~G~l~~~d-g~~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~~ 303 (378)
T d2icya2 227 ILKHLIQNKNEYCMEVTPK--TLADVKGGTLISYE-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLV 303 (378)
T ss_dssp HHHHHHHHTCSEEEEEEEC--CTTCCSSCEEEEET-TEEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHhcCCcceeEEEec--CCCCCceeEEEEEC-CceeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHHH
Confidence 7888888899988777765 3322 234443 34 34467777776642 1233578999999998887665
Q ss_pred h
Q 015225 197 G 197 (411)
Q Consensus 197 ~ 197 (411)
+
T Consensus 304 ~ 304 (378)
T d2icya2 304 E 304 (378)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.81 E-value=2.3e-09 Score=91.65 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=58.0
Q ss_pred EECCCCEECCCcEECCCcEECCCcEEE---eeEECCCCEECC---------------CcEEE-eeEECCCCEECCCcEEe
Q 015225 304 KVHPTAKIGPNVSISANVRVGAGVRLI---SCIVLDDVEIKE---------------NAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 304 ~v~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~---------------~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
.+++.+.|++++.||++|.|+++|+|. ...+++++.+.. .+.+. .++||++|.||.+|.|.
T Consensus 50 ~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~ 129 (203)
T d1mr7a_ 50 ILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIM 129 (203)
T ss_dssp EESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEEC
T ss_pred EEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCEEEECCceeEE
Confidence 444455555556666666666666663 223333333211 11122 57899999999999999
Q ss_pred cCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 365 GNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 365 ~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
.+ +.||++|.|+++++|... +.|++++.
T Consensus 130 ~g---------v~IG~~~~IgagSvV~kd-v~~~~i~~ 157 (203)
T d1mr7a_ 130 PG---------VKIGDGAIVAANSVVVKD-IAPYMLAG 157 (203)
T ss_dssp TT---------CEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred eE---------EEEcCCCEEecCeEEeee-CCCCEEEE
Confidence 88 999999999999999554 56676653
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.77 E-value=4.1e-09 Score=90.18 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=9.8
Q ss_pred CcEECCCcEECCCcEE
Q 015225 314 NVSISANVRVGAGVRL 329 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i 329 (411)
++.||++|.|+++|+|
T Consensus 54 ~v~IG~~~~I~~g~~I 69 (208)
T d1xata_ 54 KLVIGSFCSIGSGAAF 69 (208)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred eeEECCCCEECCCCEE
Confidence 4556666666666665
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.68 E-value=1.6e-07 Score=85.72 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=53.2
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE------eeEECCCCEECCCcEEecCCc-
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL------NSIIGWKSSLGRWARVQGNGD- 368 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~------~s~i~~~~~ig~~~~i~~~~~- 368 (411)
++++.+++.|+.+|.|.+++.|+.+++|++++.|.++.|.+++.|+++|.|. ++.+..++.+..++.+.+...
T Consensus 63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i~g~~~~ 142 (320)
T d2f9ca1 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGL 142 (320)
T ss_dssp TCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEECCCCCC
T ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEEECCCce
Confidence 3444555555555555555555555555555555545555555555555554 444555555555555543211
Q ss_pred -----------CCcccceeEECCCCEECCCcEEcceEEcCCCE
Q 015225 369 -----------YNAKLGITILGEAVTVEDEVVVINSIVLPNKV 400 (411)
Q Consensus 369 -----------~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~ 400 (411)
.....+.+.+..++.|+.++.+.+..+..+..
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~~a~ 185 (320)
T d2f9ca1 143 THEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAE 185 (320)
T ss_dssp SSSTTCCCEECSSCEEESCEECSSCEECSSCEEESCEECSSCE
T ss_pred eecccCcceecccceeeeeEEeeeeeeCCCccccceeeccceE
Confidence 11122345666667777666664433333333
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.22 E-value=1.1e-06 Score=74.78 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=19.6
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+++|+++|.||.+|.|.++ +.||++|.|+++++|
T Consensus 108 ~v~Igd~v~IG~~s~I~~g---------v~IG~~~vIgagSvV 141 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPG---------VRVGHGAIIGSRALV 141 (208)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEE
T ss_pred CEEEcCCeEECccccccCC---------eEeCCCCEEeCceEE
Confidence 4555666666666555555 555555555555555
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.21 E-value=4.2e-06 Score=76.04 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=71.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-e-eEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-N-SIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~-s~i~~~~~ig~~~~i~~~ 366 (411)
.+.+...+.++.++.|+.++.|.+.+.++.++.|+.++.|. ++.|+++|.|+.++.|. + ..+++++.|+.++.|.++
T Consensus 199 ~~~v~~~~~v~gn~~I~~~~~i~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~ 278 (320)
T d2f9ca1 199 NVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGE 278 (320)
T ss_dssp CCEECSSCEECSSCEEECCSSTTCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESS
T ss_pred cccccccccccccchhcCCeeeecccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEccc
Confidence 34455556666666666666666677777777777777776 57778888888888876 3 367777777777777776
Q ss_pred CcCCcccceeEECCCCEECCCcEE-----cceEEcCCCEEcCC
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-----INSIVLPNKVLNVS 404 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~ 404 (411)
+.|..++.|+.++.| ...-+.+.+++..+
T Consensus 279 ---------~~I~~~v~i~~~a~v~a~~~~~~~l~g~~~i~G~ 312 (320)
T d2f9ca1 279 ---------ILIERQVEISGRAAVIAFDDNTIHLRGPKVINGE 312 (320)
T ss_dssp ---------EEECSEEEECSSCEEECCSSCCEEECSSEEECSS
T ss_pred ---------CEEeCCCEECCCeEEEEecCCeEEccCCcEEcCc
Confidence 777777777777766 23444444444443
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=97.92 E-value=0.00028 Score=66.93 Aligned_cols=187 Identities=14% Similarity=0.196 Sum_probs=116.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhccC-----------CCCcEEEEecccchHHHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKRI-----------PNLAQIFLIGFYEEREFAL 68 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~-----------~gi~~I~Iv~~~~~~~i~~ 68 (411)
++-+|+|||| .||||+- ..||.++|| .++++++..++.+... ..+.-++.......+.+++
T Consensus 102 kvavvllaGG--~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 102 KVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp CEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CEEEEEECCC--ccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 5789999999 9999975 789999998 5789999988876542 1244344455556688899
Q ss_pred HHhhhcccCCc---ceEEeeCC---------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcCCcc
Q 015225 69 YVSSISNELKV---PVRYLKED---------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNCDVC 119 (411)
Q Consensus 69 ~~~~~~~~~~~---~i~~v~~~---------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i 119 (411)
++++. ..+|. .+.+..|. .+.|.++.+.. .++.+...+-+++.+...|.+
T Consensus 177 ~l~~~-~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~ 255 (501)
T d1jv1a_ 177 FFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI 255 (501)
T ss_dssp HHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred HHHhc-cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCc
Confidence 99874 22332 23333221 13355544332 233443344689999999987
Q ss_pred cC-CChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcCCCCceeEEeccCC--------C--cccCcccceEEEe
Q 015225 120 CS-FPLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADPNTKELLHYTEKPE--------T--FVSDLINCGVYVF 187 (411)
Q Consensus 120 ~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~e~~~--------~--~~~~~~~~Giyi~ 187 (411)
.. ..-..++-.+...++++.+-+.+. ..+ ..-|.+......-+|++|.+-|. . ......|++.++|
T Consensus 256 l~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~~~e~~G~l~~~dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~f 333 (501)
T d1jv1a_ 256 LVKVADPRFIGFCIQKGADCGAKVVEK--TNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFF 333 (501)
T ss_dssp TCCTTCHHHHHHHHHTTCSEEEEEEEC--CSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEE
T ss_pred cccccCHHHHHHHHhcccceeEEEEEc--CCCCcccceEEEECCeEEEEEeccCCHHHHhhccCCCcccccccceeheee
Confidence 53 333567788888888877777664 333 33455543202224555554331 1 1123467889999
Q ss_pred CHHHHHHhhh
Q 015225 188 TPDFFTAIQG 197 (411)
Q Consensus 188 ~~~~~~~l~~ 197 (411)
+-+.++.+.+
T Consensus 334 sl~fl~~~~~ 343 (501)
T d1jv1a_ 334 TVPFLRDVVN 343 (501)
T ss_dssp EHHHHHHHHH
T ss_pred EHHHHHHHHH
Confidence 9998877654
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.49 E-value=1.1 Score=38.85 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=68.2
Q ss_pred CcccCCc--chhHhHHHHhccCCCC---cEEEEeccc-chHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHh
Q 015225 30 LFPLAGQ--PMIQHPISACKRIPNL---AQIFLIGFY-EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMI 103 (411)
Q Consensus 30 llpi~g~--pli~~~l~~l~~~~gi---~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i 103 (411)
.+|.-|. ..|..+|+.+.+...- .+|+||=.. ..+..++.+++..+....++.++..+...|.+.+.-.+++..
T Consensus 27 IIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a 106 (328)
T d1xhba2 27 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVS 106 (328)
T ss_dssp EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHC
T ss_pred EEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhh
Confidence 4455564 3588888887664222 267776332 222222333332233455688887666778888888887765
Q ss_pred hccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeE
Q 015225 104 MEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 104 ~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~ 139 (411)
. .+.++++.+|... +.-+..+++...+....++
T Consensus 107 ~---gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v 140 (328)
T d1xhba2 107 R---GQVITFLDAHCECTAGWLEPLLARIKHDRRTVV 140 (328)
T ss_dssp C---SSEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred h---cceeeecCcccccChhHHHHHHHHHhcCCCeEE
Confidence 4 5888899999986 4558888887776665543
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.78 E-value=0.17 Score=41.56 Aligned_cols=102 Identities=9% Similarity=0.097 Sum_probs=60.0
Q ss_pred cccCCc-chhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|+ ..|..+|+.|.+++..++++||.... .+........ .......+.+.. ...|.+.+...+++... .
T Consensus 9 i~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~-~~~~~~~~~~~~--~~~g~~~a~n~~~~~a~---g 82 (265)
T d1omza_ 9 MQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNS-LGPHPIPVIFKP--QTANKMRNRLQVFPEVE---T 82 (265)
T ss_dssp EEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHH-TCCCSSCEEEEE--CSSCCGGGGGSCCTTCC---S
T ss_pred EEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHH-hcccceEEEEec--CCCCchhhhhhhHHhCC---c
Confidence 344444 68899999998875555566654322 2222222222 112222333333 33577777766666554 6
Q ss_pred CeEEEEcCCcccCC-ChHHHHHHHHhcCCee
Q 015225 109 SHIILLNCDVCCSF-PLPDLLEAHKRYGGMG 138 (411)
Q Consensus 109 ~~~lv~~~D~i~~~-~l~~~l~~~~~~~~~~ 138 (411)
+.++++.+|.+... .+..+++...+....+
T Consensus 83 e~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 113 (265)
T d1omza_ 83 NAVLMVDDDTLISAQDLVFAFSIWQQFPDQI 113 (265)
T ss_dssp SEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence 88999999998754 4888888776655543
|
| >d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MM2497-like domain: Hypothetical protein MM2497 species: Methanosarcina mazei [TaxId: 2209]
Probab=85.00 E-value=0.59 Score=38.04 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.|||+--...--|||.|. ..+.--.-.-+.|+.++++.+.+. ++..++++++.... .. ...+..+
T Consensus 1 m~~iiPiK~~~aKTRL~~~---L~~~~r~~L~~~ml~~tl~~l~~~-~~~~v~~vs~~~~~------~~--~~~~~~~-- 66 (208)
T d2i5ea1 1 MRAVIPYKKAGAKSRLSPV---LSLQEREEFVELMLNQVISSLKGA-GIEQVDILSPSVYG------LE--EMTEARV-- 66 (208)
T ss_dssp CEEEEECCCTTTTGGGTTT---SCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTT------CS--SCCSSEE--
T ss_pred CeEEEecCCCCCccCcCcc---cCHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCcHHH------HH--HhhcCCc--
Confidence 6788886311135788762 111100011235899999999996 88888888764331 01 1111222
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHH
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLL 128 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l 128 (411)
..+ ..|...++..+.+.- .+.++++.+|++. ..++..++
T Consensus 67 ~~~--~~~L~~al~~a~~~~----~~~vliig~DlP~L~~~~l~~a~ 107 (208)
T d2i5ea1 67 LLD--EKDLNEALNRYLKEA----EEPVLIVMADLPLLSPEHIKEIS 107 (208)
T ss_dssp EEC--CSCHHHHHHHHHHHC----CSCEEEECSCCTTCCHHHHHHHT
T ss_pred ccC--CCCHHHHHHHHHhcC----CCCEEEecCCcCcCCHHHHHHHH
Confidence 222 246677777765532 5899999999985 44455543
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=83.81 E-value=5.6 Score=32.32 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=60.2
Q ss_pred CcchhHhHHHHhccCCCCc--EEEEecccchHHHHHHHhhhcccCCcceEEeeCC--------CCCCChHHHHHHHHHhh
Q 015225 35 GQPMIQHPISACKRIPNLA--QIFLIGFYEEREFALYVSSISNELKVPVRYLKED--------KPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 35 g~pli~~~l~~l~~~~gi~--~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~--------~~~g~~~~l~~~~~~i~ 104 (411)
+...|..+|+.+..+ -.+ +|+|+-....+...+.+++..+. .+++++... ...|.++++-.+++...
T Consensus 12 ~~~~l~~~l~Si~~Q-t~~~~eiivvdd~S~d~t~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a~ 88 (255)
T d1qg8a_ 12 KSDYVAKSISSILSQ-TFSDFELFIMDDNSNEETLNVIRPFLND--NRVRFYQSDISGVKERTEKTRYAALINQAIEMAE 88 (255)
T ss_dssp CTTTHHHHHHHHHTC-SCCCEEEEEEECSCCHHHHHHHGGGGGS--TTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhC-CCCCeEEEEEECCCCccHHHHHHHhhhh--cccccccccccccccccccchhcccccccccccc
Confidence 346788999998776 333 45555333344556667664332 345655432 34566777777777664
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHhcC
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKRYG 135 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 135 (411)
.+.++++.+|.+...+ +..+++.+.+..
T Consensus 89 ---g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~ 117 (255)
T d1qg8a_ 89 ---GEYITYATDDNIYMPDRLLKMVRELDTHP 117 (255)
T ss_dssp ---CSEEEEEETTEEECTTHHHHHHHHHHHCT
T ss_pred ---cccccccccccccccchHHHHHHHHHhCC
Confidence 5788899999876444 788887775543
|