Citrus Sinensis ID: 015231

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
cccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccc
cHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEEccccc
MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLShlstplvdqvehsleiplhrgmprleARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILgvyfepkystTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKlvnkeplccMYYAKEAIKGLVKAYFVEAkwfhakyvptfeecvenstmssgypMLAVEALVGLEDMAITKRALDWaisvpkiirsssliarldddvhtykveqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNineeiqdpnhpplqwllpslNLARMMVVLYQngdgytnstgktkdriasllvdplpm
MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALdwaisvpkiirsssliarlDDDVHTYKVeqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGdgytnstgktkdriasllvdplpm
MLTNDAKGLLCLYEASYLRVQGENILEEACEFsrkhlksllshlsTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
******KGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYT********************
MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLK*************VEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV*********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
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MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.992 0.732 0.526 1e-128
F6M8H7562 Probable sesquiterpene sy N/A no 0.987 0.722 0.512 1e-122
D0VMR7547 Delta-guaiene synthase 2 N/A no 0.975 0.733 0.504 1e-121
F6M8H4559 Probable sesquiterpene sy N/A no 0.987 0.726 0.517 1e-121
D0VMR8547 Delta-guaiene synthase 3 N/A no 0.975 0.733 0.509 1e-121
F6M8H5562 Probable sesquiterpene sy N/A no 0.987 0.722 0.512 1e-120
D0VMR6547 Delta-guaiene synthase 1 N/A no 0.975 0.733 0.507 1e-120
B5A435559 Sesquiterpene synthase OS N/A no 0.987 0.726 0.514 1e-120
Q43714555 (+)-delta-cadinene syntha N/A no 0.987 0.731 0.522 1e-119
E3W207559 Sesquiterpene synthase OS N/A no 0.987 0.726 0.519 1e-119
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 2/410 (0%)

Query: 2   LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLH 61
           L++D +G+L LYEA++ RV GE+IL+EA  F+  HL+S   H S PL +QV H+L+ P+ 
Sbjct: 150 LSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIR 209

Query: 62  RGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 121
           +G+PRLEAR Y S+Y+AD+S  N+ +L+LAKLDFNLLQ LH+ ELS+IS WWKD+DFA K
Sbjct: 210 KGLPRLEARHYFSVYQADDS-HNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHK 268

Query: 122 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHA 181
           LPFARDR+VECYFWILGVYFEP++   R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A
Sbjct: 269 LPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEA 328

Query: 182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVE 241
           +ERW++ A ++LP+YM+VCY ALL V  E+E+++  +     +YYAKEA+K  V+AY+ E
Sbjct: 329 VERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEE 388

Query: 242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301
           AKW   + +PT EE +  + ++S Y MLA  + VG+ D A+TK + DW  S PKI+R+S+
Sbjct: 389 AKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGD-AVTKESFDWIFSKPKIVRASA 447

Query: 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361
           ++ RL DD+  +K EQ+RG   S+VECY++Q+G SE+E  N+    V   W +INEE   
Sbjct: 448 IVCRLMDDMVFHKFEQKRGHVASAVECYMKQHGASEQETPNEFPQPVREAWKDINEECLI 507

Query: 362 PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411
           P   P+  L+  LNLAR++ V+Y+N DGYT+     KD + S+L+DP+P+
Sbjct: 508 PTAVPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|D0VMR7|DGUS2_AQUCR Delta-guaiene synthase 2 OS=Aquilaria crassna GN=C3 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|D0VMR8|DGUS3_AQUCR Delta-guaiene synthase 3 OS=Aquilaria crassna GN=C4 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|D0VMR6|DGUS1_AQUCR Delta-guaiene synthase 1 OS=Aquilaria crassna GN=C2 PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.992 0.732 0.529 1e-127
147856860 557 hypothetical protein VITISV_030783 [Viti 0.992 0.732 0.529 1e-127
147828675 557 hypothetical protein VITISV_013313 [Viti 0.992 0.732 0.526 1e-127
75223414 557 RecName: Full=(-)-germacrene D synthase 0.992 0.732 0.526 1e-126
225461172 557 PREDICTED: (-)-germacrene D synthase [Vi 0.992 0.732 0.519 1e-125
41058926 561 (-)-germacrene D synthase [Populus trich 0.992 0.727 0.517 1e-125
392306394 556 sesquiterpene synthase [Toona sinensis] 0.992 0.733 0.533 1e-124
315134533 556 sesquiterpene synthase [Toona sinensis] 0.992 0.733 0.533 1e-124
347664489 557 (E)-beta-caryophyllene synthase [Vitis v 0.992 0.732 0.521 1e-123
401834503 545 sesquiterpene synthase [Gossypium hirsut 0.992 0.748 0.536 1e-122
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/410 (52%), Positives = 305/410 (74%), Gaps = 2/410 (0%)

Query: 2   LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLH 61
           L++D +G+L LYEA++ RV GE+IL+EA  F+  HL+S   H S PL +QV H+L+ P+ 
Sbjct: 150 LSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIR 209

Query: 62  RGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 121
           +G+PRLEAR Y S+Y+AD+S  N+ +L+LAKLDFNLLQ LH+ ELS+IS WWKD+DFA K
Sbjct: 210 KGLPRLEARHYFSVYQADDS-HNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHK 268

Query: 122 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHA 181
           LPFARDR+VECYFWILGVYFEP++   R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A
Sbjct: 269 LPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEA 328

Query: 182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVE 241
           +ERW++ A ++LP+YM+VCY ALL V  E+E+++  +     +YYAKEA+K  V+AY+ E
Sbjct: 329 VERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEE 388

Query: 242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301
           AKW   + +PT EE +  + ++S Y MLA  + VG+ D A+TK + DW  S PKI+R+S+
Sbjct: 389 AKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGD-AVTKESFDWIFSKPKIVRASA 447

Query: 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361
           ++ RL DD+ ++K EQ+RG   S+VECY++Q+G SE+E  N+    V   W +INEE   
Sbjct: 448 IVCRLMDDMVSHKFEQKRGHVASAVECYMKQHGASEQETHNEFHKQVRDAWKDINEECLI 507

Query: 362 PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411
           P   P+  L+  LNLAR++ V+Y+N DGYT+S    KD + S+L+DP+P+
Sbjct: 508 PTAVPMPILMRVLNLARVIDVIYKNEDGYTHSGTVLKDFVTSMLIDPVPI 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|401834503|gb|AFQ23183.1| sesquiterpene synthase [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.987 0.726 0.504 4.9e-108
UNIPROTKB|D0VMR7547 C3 "Delta-guaiene synthase 2" 0.975 0.733 0.485 2.1e-107
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.975 0.733 0.490 2.7e-107
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.975 0.733 0.487 9.2e-107
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.995 0.743 0.481 1.4e-101
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.992 0.714 0.456 5.9e-96
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.973 0.709 0.432 2.2e-89
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.990 0.734 0.429 7.5e-89
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.975 0.722 0.425 1.4e-87
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.990 0.720 0.417 1.8e-87
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 206/408 (50%), Positives = 284/408 (69%)

Query:     2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
             L  DAKGLL LYEA++L V GE +L++A EF              PL +QV H+L  PL 
Sbjct:   152 LMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLR 211

Query:    62 RGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 121
             +G+PRLEA  +  IYEA +S  N+ +L+LAKLDFNLLQ+LH+ ELS+++RWWK +DFA K
Sbjct:   212 KGLPRLEAVYFFRIYEAYDS-HNKALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAK 270

Query:   122 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHA 181
              PFARDRLVE YFW+LGVYFEP+YS  RK + K+  + S IDDIYD YGTL+EL+LFT A
Sbjct:   271 FPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKA 330

Query:   182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVE 241
             ++RW+V + ++LP+YM+ CY ++LDV  E+E+++ N+  L  M+YAKE +K LV+ Y  E
Sbjct:   331 MQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDE 390

Query:   242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301
             AKW H KYVPTFEE +  + ++SGY  L   + +G+ ++A +K A DW  S P +I +S 
Sbjct:   391 AKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIA-SKEAFDWLFSHPPVIEASE 449

Query:   302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361
              + RL DD+ ++K EQERG   S +ECY++QYGV+EEEA ++ +  +   W +INEE   
Sbjct:   450 SVCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKAWKDINEECLR 509

Query:   362 PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 409
             P   P   L+  LNL R++ V+Y+N DGYT+     KD IASLL+DP+
Sbjct:   510 PYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.52680.99270.7324yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-109
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-101
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-32
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 5e-32
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-20
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 7e-20
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 8e-15
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  551 bits (1421), Expect = 0.0
 Identities = 217/411 (52%), Positives = 291/411 (70%), Gaps = 6/411 (1%)

Query: 2   LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEI 58
           LT D KG+L LYEAS+L   GE+IL+EA  F+ KHL+  L     +   L  ++E++LEI
Sbjct: 134 LTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEI 193

Query: 59  PLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDF 118
           PLH  +PRLEAR YI  YE ++   NE +LELAKLDFN+LQALH+ EL  +SRWWKD+D 
Sbjct: 194 PLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNILQALHQEELKILSRWWKDLDL 252

Query: 119 ATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLF 178
           A+KLPFARDRLVECYFW  G YFEP+YS  R  + K IA+ +VIDD YDVYGTLEEL+LF
Sbjct: 253 ASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELF 312

Query: 179 THAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAY 238
           T A+ERW++ A ++LP+YM++ + ALL+ V E+E++L+ +     + Y KEA K LVKAY
Sbjct: 313 TEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAY 372

Query: 239 FVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIR 298
            VEAKW H  YVPTFEE +EN+ +S G   L + + +G+ D+ +T+ A +W  S PK++R
Sbjct: 373 LVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVR 431

Query: 299 SSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 358
           +SS I RL +D+ TY+ E +RGD  SS+ECY+++YGVSEEEA  +IK M+E  W  +NEE
Sbjct: 432 ASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEE 491

Query: 359 IQDPNHP-PLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP 408
              P+   P       LNLAR++ V Y+ GDG+T+  G+ KD I SLL +P
Sbjct: 492 FLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 100.0
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.87
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.9
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.7
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 95.56
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 93.57
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 90.72
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 90.26
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 88.55
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.91
PLN02632334 phytoene synthase 85.72
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=3.7e-119  Score=945.79  Aligned_cols=404  Identities=54%  Similarity=0.921  Sum_probs=395.6

Q ss_pred             cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc---CCCchHHHHHHhccCccccCcchhHHHhhHHhhhc
Q 015231            2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEA   78 (411)
Q Consensus         2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~   78 (411)
                      +.+||+||||||||||+++|||+|||||++||++||++++++   ++++|+++|++||++|||+++||||||+||++|++
T Consensus       134 ~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~  213 (542)
T cd00684         134 LTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQ  213 (542)
T ss_pred             hhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCC
Confidence            357999999999999999999999999999999999999986   78999999999999999999999999999999999


Q ss_pred             CcccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHH
Q 015231           79 DNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAI  158 (411)
Q Consensus        79 ~~~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l  158 (411)
                      + +++|++||||||+|||+||++||+||+++++||+++||.+++||+|+|+++||||++|++|||++|.+|+++||+++|
T Consensus       214 ~-~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l  292 (542)
T cd00684         214 E-DDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIAL  292 (542)
T ss_pred             C-ccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHH
Confidence            9 999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Q 015231          159 ASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKA  237 (411)
Q Consensus       159 ~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a  237 (411)
                      +|++||+||.|||.+|++.||+|++|||+++++++|+|||+||.++++++++++.++.+ +++ +++.+++++|++++++
T Consensus       293 ~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a  371 (542)
T cd00684         293 ITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKA  371 (542)
T ss_pred             HhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998 666 8999999999999999


Q ss_pred             HHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhh
Q 015231          238 YFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ  317 (411)
Q Consensus       238 ~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~  317 (411)
                      |++||+|+++||+||++|||++|++|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+|+++|+
T Consensus       372 ~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~  450 (542)
T cd00684         372 YLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEM  450 (542)
T ss_pred             HHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHH
Confidence            9999999999999999999999999999999999999999999 999999998878999999999999999999999999


Q ss_pred             ccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhhhhcccCCCCCCCChh
Q 015231          318 ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGK  396 (411)
Q Consensus       318 ~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~  396 (411)
                      ++|+++|+|.|||+|+|+|+|||+++++++|+++||++|++++++ +.+|++|+++++|++|+++++|+++||||.|++.
T Consensus       451 ~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~  530 (542)
T cd00684         451 KRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGE  530 (542)
T ss_pred             hcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHH
Confidence            999999999999999999999999999999999999999999997 7899999999999999999999999999999888


Q ss_pred             HHHHHHhhhccC
Q 015231          397 TKDRIASLLVDP  408 (411)
Q Consensus       397 ~k~~i~~l~~~p  408 (411)
                      ||++|++||++|
T Consensus       531 ~~~~i~~ll~~p  542 (542)
T cd00684         531 IKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHhcCC
Confidence            999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-109
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-93
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-93
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-93
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-93
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-93
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-93
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 5e-93
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 5e-92
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-91
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-77
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-77
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-73
2j5c_A569 Rational Conversion Of Substrate And Product Specif 6e-73
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 9e-65
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 4e-55
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-48
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 9e-10
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/410 (48%), Positives = 273/410 (66%), Gaps = 2/410 (0%)
Query: 2   LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
           +T+D +GLL LY+ASYLRV GE+IL+EA  F              PL ++V H+L+  + 
Sbjct: 147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIR 206
Query: 62  RGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 121
           RG+PR+EAR Y+S+Y+ D  + N+ +LE AK+DFN+LQ LHR ELSEI RWWKD+DF  K
Sbjct: 207 RGLPRVEARHYLSVYQ-DIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRK 265
Query: 122 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHA 181
           LP+ARDR+VE YFWI GVYFEP+YS  RK +TK+IA+AS++DD YD Y T EEL  +T+A
Sbjct: 266 LPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNA 325
Query: 182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVE 241
           IERW++   +E+P+YM+  Y ALLDV +EM   +        + YAK A+  L ++Y VE
Sbjct: 326 IERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVE 385
Query: 242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301
           AKW    Y P+FEE   N+  + GY MLA+ + VG+ D+ +T     WA S PKII++S+
Sbjct: 386 AKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQAST 444
Query: 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361
           +I R  DDV  +K +  R D  S++ECY+++YGV+ +EA +     VE  W ++N+E   
Sbjct: 445 IICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLK 504
Query: 362 PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411
           P   P + L  SLNLAR+M VLY+ GDGYT      K  I SLL++P+ +
Sbjct: 505 PTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-150
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-149
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-145
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-145
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-143
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-140
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-133
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-130
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-128
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 3e-78
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-33
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-31
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-16
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 4e-12
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  436 bits (1122), Expect = e-150
 Identities = 200/410 (48%), Positives = 278/410 (67%), Gaps = 2/410 (0%)

Query: 2   LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLH 61
           +T+D +GLL LY+ASYLRV GE+IL+EA  F+  HL   ++ L  PL ++V H+L+  + 
Sbjct: 147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIR 206

Query: 62  RGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 121
           RG+PR+EAR Y+S+Y+   S  N+ +LE AK+DFN+LQ LHR ELSEI RWWKD+DF  K
Sbjct: 207 RGLPRVEARHYLSVYQDIES-HNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRK 265

Query: 122 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHA 181
           LP+ARDR+VE YFWI GVYFEP+YS  RK +TK+IA+AS++DD YD Y T EEL  +T+A
Sbjct: 266 LPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNA 325

Query: 182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVE 241
           IERW++   +E+P+YM+  Y ALLDV +EM   +        + YAK A+  L ++Y VE
Sbjct: 326 IERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVE 385

Query: 242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301
           AKW    Y P+FEE   N+  + GY MLA+ + VG+ D+ +T     WA S PKII++S+
Sbjct: 386 AKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQAST 444

Query: 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361
           +I R  DDV  +K +  R D  S++ECY+++YGV+ +EA +     VE  W ++N+E   
Sbjct: 445 IICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLK 504

Query: 362 PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411
           P   P + L  SLNLAR+M VLY+ GDGYT      K  I SLL++P+ +
Sbjct: 505 PTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.82
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 91.58
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 88.75
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 86.33
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 84.76
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.7e-131  Score=1026.79  Aligned_cols=406  Identities=49%  Similarity=0.869  Sum_probs=388.0

Q ss_pred             ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhcCCCchHHHHHHhccCccccCcchhHHHhhHHhhhcCccc
Q 015231            3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNST   82 (411)
Q Consensus         3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~   82 (411)
                      .+||+||||||||||+++|||+|||||+.||++||++++++++++|+++|+|||++|||+++||||||+||++|+++ ++
T Consensus       148 ~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~  226 (554)
T 3g4d_A          148 TSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ES  226 (554)
T ss_dssp             HHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TT
T ss_pred             ccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-cc
Confidence            58999999999999999999999999999999999999888888999999999999999999999999999999999 99


Q ss_pred             ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHHhh
Q 015231           83 RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI  162 (411)
Q Consensus        83 ~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~~~  162 (411)
                      +|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++
T Consensus       227 ~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tvi  306 (554)
T 3g4d_A          227 HNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIV  306 (554)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHH
Q 015231          163 DDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVE  241 (411)
Q Consensus       163 DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~E  241 (411)
                      ||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++.+ |+. ++++|++++|++++++|++|
T Consensus       307 DD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~E  385 (554)
T 3g4d_A          307 DDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVE  385 (554)
T ss_dssp             HHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988 776 78999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCC
Q 015231          242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD  321 (411)
Q Consensus       242 A~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~  321 (411)
                      |+|+++||+||+||||+||++|+|++++++++++|||+. +|+++++|+.++|+|+++++.|+||+|||+||++|+++|+
T Consensus       386 AkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~  464 (554)
T 3g4d_A          386 AKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRRED  464 (554)
T ss_dssp             HHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCC
Confidence            999999999999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHHHH
Q 015231          322 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRI  401 (411)
Q Consensus       322 ~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i  401 (411)
                      ++|+|+|||+|||+|+|||+++++++|+++||+||+++++++++|++|+++++|++|++++||++|||||.|+.+||++|
T Consensus       465 van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i  544 (554)
T 3g4d_A          465 DCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGI  544 (554)
T ss_dssp             CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHH
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999999998899999999999999999999999999999988899999


Q ss_pred             HhhhccCCCC
Q 015231          402 ASLLVDPLPM  411 (411)
Q Consensus       402 ~~l~~~pi~~  411 (411)
                      ++||++|||+
T Consensus       545 ~~ll~~Pi~l  554 (554)
T 3g4d_A          545 TSLLIEPIAL  554 (554)
T ss_dssp             HHHHTCCCCC
T ss_pred             HHHhcCCCCC
Confidence            9999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 411
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-140
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-135
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-51
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 1e-34
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 6e-29
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-28
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  401 bits (1031), Expect = e-140
 Identities = 119/326 (36%), Positives = 189/326 (57%)

Query: 84  NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 143
           N LI ELAKL+FN++QA H+ EL ++SRWW  + F  KLPF RDRLVE +FW +G++   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 144 KYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFA 203
           ++   RK    II +A+VIDDIYDVYGTL+EL+LFT   +RW+  +   LP YMQ+CY+ 
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 204 LLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMS 263
           + + + +    ++ +    C+ Y ++++  LV+AYF EAKW+H+ Y P+ +E +  + +S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 264 SGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAP 323
              P +         + +     +D       I+  + +I RL DD+ T   E  RGD P
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 324 SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL 383
            +++CY+++   SEEEA   +K ++   W ++N  I      P   +  + N+ R+   +
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFI 301

Query: 384 YQNGDGYTNSTGKTKDRIASLLVDPL 409
           Y +GDG+     KT + IA LL +P 
Sbjct: 302 YLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.97
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 99.93
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 99.93
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.53
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 83.75
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=9.7e-103  Score=768.49  Aligned_cols=327  Identities=36%  Similarity=0.706  Sum_probs=305.2

Q ss_pred             ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHHhh
Q 015231           83 RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI  162 (411)
Q Consensus        83 ~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~~~  162 (411)
                      +|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||.+++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             hhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHH
Q 015231          163 DDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVE  241 (411)
Q Consensus       163 DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~E  241 (411)
                      ||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.++.+ +|+ +..++++++|++++++|++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~-~~~~~lk~~w~~l~~ayl~E  159 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHE  159 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998888 666 89999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCC
Q 015231          242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD  321 (411)
Q Consensus       242 A~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~  321 (411)
                      |+|+++||+||+||||+||.+|+|+++++++++++||+...++++++|+.++|+++++++.|+||+|||+||++|++||+
T Consensus       160 akW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~  239 (328)
T d1n1ba2         160 AKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGD  239 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------C
T ss_pred             HHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCC
Confidence            99999999999999999999999999999999999998724566899999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHHHH
Q 015231          322 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRI  401 (411)
Q Consensus       322 ~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i  401 (411)
                      ++|+|+|||+|+|+|+|||+++++++|+++||++|+++++++++|++|+++++|+||+++++|++|||||+|++.||++|
T Consensus       240 ~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k~~I  319 (328)
T d1n1ba2         240 VPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHI  319 (328)
T ss_dssp             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHH
T ss_pred             cchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HhhhccCCC
Q 015231          402 ASLLVDPLP  410 (411)
Q Consensus       402 ~~l~~~pi~  410 (411)
                      ++||++||.
T Consensus       320 ~~ll~ePvs  328 (328)
T d1n1ba2         320 AGLLFEPYA  328 (328)
T ss_dssp             HHHHTSCCC
T ss_pred             HHHhccCCC
Confidence            999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure