Citrus Sinensis ID: 015232

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MISLPPAYPPISPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDDVAVAINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFFPLSESSVRFSGSSRRSKSMTSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEcccccccccccccccccEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHccEEEEEEccccccccccccccEEEEHHHccccccEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEccccccccccEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHcccHHHcccc
Coil and Loop (DISEMBL)
mislppayppispttvyditssssstsppsnnnnnnnntkppvdfspplIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRrryylpssngdpldsppfypspfnhpidsfrvyspyglddsviktiplslftaknKTTSKALREARDCAVCLLEfeendyvrtlpgcshsfhvdCIDIWLrshancplcragifltespfvpimaarirpslddssllQHVTVSLEslseiqmptttaastngseitpcvDDVAVAInnnnfnseerfngrdfllkrsysfgferslaSERMVTEavtaspwryrrgsfwskrpspfgsltksrvfsfrhyrgmkspflrrrgffplsessvrfsgssrrsksmtspmfprssasafsssrlrcgdpeallspdrfnrr
Flexible Loop (DISEMBL)
mislppayppisPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSrlisrhllpplirifrrwkrwrrrrrrryylpssngdpldsppfYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSleslseiqmptttaastngseITPCVDDVAVAINNNnfnseerfngrdFLLKRSYSFGferslasermvteavtaspwryrrgsfwskrpspfgsltksrvfsfRHYRGMkspflrrrgffplsessvrfsgssrrsksmtspmfprssasafsssrlrcgdpeallspdrfnrr
Low Complexity Region (SEG)
MISLPPAYPPISPTTVYDItssssstsppsnnnnnnnntKPPVDFSPPLIAMvvvvataflvvtYSRLISRHLLPPLIRIFrrwkrwrrrrrrrYYLPSSNGDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDDVAVAInnnnfnseerfnGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFFPLsessvrfsgssrrsksmtspmfprssasafsssrLRCGDPEALLSPDRFNRR
Disordered region (IsUnstruct)
**********************************************PPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYL****************PFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSL*******************EITPCVDDVAVAINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFF******************************************************
Disordered Region (DISOPRED)
*********************************************SPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRW****************************************YGLDDSVIKTIPLSLFTAK**********ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL**************************************************************************************************************************************************************************************************LL*PD*****
Disordered Region (DISEMBL)
MISLPPAYPPISPTTV****************NNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDDVAVAINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFFPLSES********************************RCGDPEALLSPDRFNRR
Disordered Region (DISPRO)
*******Y**********************************VDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRW*******************************NHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL*********************************************************************************************SERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMK*************************SKSMTSP********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISLPPAYPPISPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDDVAVAINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFFPLSESSVRFSGSSRRSKSMTSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q67YI6	411	RING-H2 finger protein AT	yes	no	0.868	0.868	0.539	5e-83
P93823	381	RING-H2 finger protein AT	no	no	0.343	0.370	0.337	8e-22
Q7XLY8	383	E3 ubiquitin-protein liga	no	no	0.559	0.600	0.309	7e-21
Q8GW38	369	RING-H2 finger protein AT	no	no	0.343	0.382	0.325	3e-20
Q9LSW9	375	RING-H2 finger protein AT	no	no	0.318	0.349	0.341	4e-20
Q9SRQ8	356	RING-H2 finger protein AT	no	no	0.355	0.410	0.333	3e-19
Q9LF64	362	RING-H2 finger protein AT	no	no	0.464	0.527	0.289	1e-18
P0C041	310	Putative RING-H2 finger p	no	no	0.357	0.474	0.358	8e-18
Q8LFY8	413	RING-H2 finger protein AT	no	no	0.369	0.368	0.345	1e-17
Q8L9T5	304	RING-H2 finger protein AT	no	no	0.180	0.243	0.5	5e-17

>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2

 Score =  308 bits (789), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 213/395 (53%), Positives = 252/395 (63%), Gaps = 38/395 (9%)

Query: 36  NNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRY 95
           + ++ PP++FSPPLIAMVVV+A AFL VTYSRLISR  L PL R FRRW+  RRR     
Sbjct: 29  SRSSDPPLEFSPPLIAMVVVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLS 88

Query: 96  YLPSSNGDPLDSPPFYPSPFNHPIDSFRV--YSPYGLDDSVIKTIPLSLFTAKNKTTSKA 153
              S++    D   F P PF    DSF    YSPYGLDDSVIKT+PL L++A   T   A
Sbjct: 89  SASSASTSSSDLRSFSPFPF----DSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPA 144

Query: 154 LRE-----ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR------ 202
           + +      RDCAVCLLEFEE DYVRTLP C H+FH++CID WLRSH NCPLCR      
Sbjct: 145 VGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

Query: 203 AGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCV 262
           AG+    SPFVP+MA RIRPSLDD      +     + S     T  A +TN  EI   V
Sbjct: 205 AGVLTPMSPFVPLMAPRIRPSLDDEENNAIIIRGEITPSRSNWNTIAADTTNDQEIRASV 264

Query: 263 DDVAV-AINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSF 321
           ++ +  AI+        RF      LKRSYSF  ER   SER+  E  T SPWRYRR + 
Sbjct: 265 EEQSSPAIS--------RFRE----LKRSYSFECERESESERVTMEPATVSPWRYRRST- 311

Query: 322 WSKRPSPFGSL-TKSRVFSFRHYRGMKSPFLRRRG----FFPLSESSVRFSGSSRRSKSM 376
           W+KR SPFG+L +KSRVFSFR+YR  KSPF RRR     F+P+SE       SSRR+KSM
Sbjct: 312 WNKRQSPFGNLISKSRVFSFRYYRSTKSPFFRRRSSAGVFYPISERIPATGSSSRRTKSM 371

Query: 377 TSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
           TSPMF R++    SSSRLRCGDPEALLSP+R+ RR
Sbjct: 372 TSPMFFRTAPH--SSSRLRCGDPEALLSPERWRRR 404

Arabidopsis thaliana (taxid: 3702)

>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 34/175 (19%)

Query: 50  IAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPP 109
           IA++ ++ATAFL+V+Y   + +  L      + +   +RRRRR      SS+ +PL    
Sbjct: 46  IAVIGILATAFLLVSYYIFVIKCCLN-----WHQIDIFRRRRR------SSDQNPL---- 90

Query: 110 FYPSPFNHPIDSFRVYSPY----GLDDSVIKTIPLSLFTAKNKTTSK--ALREARDCAVC 163
                         +YSP+    GLD+S I+ IP+  F  ++    +    + +++C+VC
Sbjct: 91  -------------MIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVC 137

Query: 164 LLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAA 218
           L EF+E++ +R +P C H FH+DCIDIWL+ +ANCPLCR  +    S  + +++A
Sbjct: 138 LNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISA 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2

 Score =  102 bits (253), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 37  NNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYY 96
           +++  PV FSP +IA++ V+A+AFL+V+Y   IS++               R R      
Sbjct: 48  DDSSGPV-FSPLVIAIIGVLASAFLLVSYYTFISKYC--------GTVSSLRGRVFGSSS 98

Query: 97  LPSSNGDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALRE 156
             ++ G    S   +    +   +S+ V  P GLD+++I  I +  +   +         
Sbjct: 99  GGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGD-----GFVH 153

Query: 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFV--- 213
             DC+VCL EF + + +R LP CSH+FH  CID WL+SH+NCPLCRA I           
Sbjct: 154 TTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLASPE 213

Query: 214 PIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDDVAVAINNNN 273
           P   A      D++  +  V   LE+L E Q    + AST   +      DVA  +   N
Sbjct: 214 PEGCAPGETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADDDHD--AKDVAEGMEEAN 271

Query: 274 FNSEERFNG 282
             +E R  G
Sbjct: 272 GAAEIREEG 280

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 22/163 (13%)

Query: 45  FSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDP 104
            SP ++ ++V+++  F + +   L+ R+ L                +++R  L SS  + 
Sbjct: 49  ISPIILFIIVLLSVIFFICSILHLLVRYYL----------------KKKRSNLSSSPNES 92

Query: 105 LDSPPFYPSP-FNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVC 163
             +P F  S  +   +         GLD ++I  +P+ L+        K  +E  DCAVC
Sbjct: 93  NQNPEFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKE-----IKGTKEPFDCAVC 147

Query: 164 LLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206
           L EF E+D +R LP CSH+FH+DCID WL S++ CPLCR  +F
Sbjct: 148 LCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLF 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 39/170 (22%)

Query: 50  IAMVVVVATAFLVVTYSRLISRHLLP-PLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSP 108
           +A++ ++ATAFL+V+Y   + +  L    I I  R+   RRRR        ++ DPL   
Sbjct: 39  VAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRR--------NDQDPL--- 87

Query: 109 PFYPSPFNHPIDSFRVYSPY----GLDDSVIKTIPLSLFTAKNKTTSKAL---------R 155
                          VYSP     GLD+SVI+ IP+  F  +                 +
Sbjct: 88  --------------MVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEK 133

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
            +++C+VCL EF++ + +R +P CSH FH+DCID+WL+++ANCPLCR  +
Sbjct: 134 RSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 34/180 (18%)

Query: 47  PPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLD 106
           P LIA++ ++A+AF++V+Y  LIS++                   RRR+   S++   ++
Sbjct: 58  PLLIALIGILASAFILVSYYTLISKYC-----------------HRRRHNSSSTSAAAIN 100

Query: 107 ----------SPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALRE 156
                     +     +   +P  +       GLD+S+IK+I +  +   +        E
Sbjct: 101 RISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMD-----GFVE 155

Query: 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIM 216
           + DC+VCL EF+EN+ +R LP C+H+FHV CID WL+SH+NCPLCRA  F+  S  V I+
Sbjct: 156 SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA--FIVTSSAVEIV 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 44/235 (18%)

Query: 50  IAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPP 109
           IA++ ++ +A ++V+Y  LIS++                     R++  SS+ + L+   
Sbjct: 59  IALIGILTSALILVSYYTLISKYC-------------------HRHHQTSSS-ETLN--- 95

Query: 110 FYPSPFNHPIDSF-----RVYS-PYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVC 163
                 NH  + F     R+ +   GL++S+IK+I     T     +     +  DC+VC
Sbjct: 96  -----LNHNGEGFFSSTQRISTNGDGLNESMIKSI-----TVYKYKSGDGFVDGSDCSVC 145

Query: 164 LLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPS 223
           L EFEEN+ +R LP C+H+FH+ CID WL+SH+NCPLCRA +    +P   +    +   
Sbjct: 146 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASV-GQNVSVV 204

Query: 224 LDDSSLLQHVTVSLESLSEIQMPTTTAASTNGS-EITPCVDDVAVAINNNNFNSE 277
           + + S   H T    S+SEI +      S  G  +    ++D+ +   N++  SE
Sbjct: 205 VANQSNSAHQT---GSVSEINLNLAGYESQTGDFDSVVVIEDLEIGSRNSDARSE 256

Arabidopsis thaliana (taxid: 3702)

>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2

 Score = 92.0 bits (227), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 26/173 (15%)

Query: 44  DFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSN-- 101
           + SP +IA+  + ATAFL+  Y  L+S++            +      R    L  ++  
Sbjct: 57  NLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTN-----EAASESGRSDIILDVNSPE 111

Query: 102 -GDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDC 160
            GD  D       PF   ++S    S  GLDD++IK I    F  K       +    DC
Sbjct: 112 RGDQDD-------PF--ALES----STAGLDDTLIKKI--GFFKLKKHQNGFKIN-GTDC 155

Query: 161 AVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL--TESP 211
           ++CL EF E++ +R LP C+H+FHV CID WL+SH+NCPLCRA I +  T+ P
Sbjct: 156 SICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQP 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 41  PPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSS 100
           P  D S  L A+ ++  T  ++     L++   L  + + F       R  +  Y   + 
Sbjct: 72  PSQDSSSSLDAISIITITGAVLAI---LLTGFFL--VAKFFS--DSVNRVNQGTYQSDNE 124

Query: 101 NGDPLDSPPFYP-SPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARD 159
           + D +    F      +HPI   R     GL  S+I +I     T  N      L E  D
Sbjct: 125 DNDTVMEEEFQDREQVDHPIWLIRTT---GLQQSIINSI-----TICNYKRGDGLIERTD 176

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207
           C VCL EFEE++ +R LP C+H+FH+ CID WL SH NCPLCRAGI +
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAM 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 6/80 (7%)

Query: 124 VYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSF 183
           V +  GLD +VIK++P+  FT  ++T    +    +CAVCL EFEE++  R LP C H+F
Sbjct: 89  VVASRGLDPNVIKSLPV--FTFSDETHKDPI----ECAVCLSEFEESETGRVLPNCQHTF 142

Query: 184 HVDCIDIWLRSHANCPLCRA 203
           HVDCID+W  SH+ CPLCR+
Sbjct: 143 HVDCIDMWFHSHSTCPLCRS 162

May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
449455322	421	PREDICTED: RING-H2 finger protein ATL65-	0.866	0.845	0.674	1e-127
359475158	396	PREDICTED: RING-H2 finger protein ATL65-	0.953	0.989	0.640	1e-121
224105475	367	predicted protein [Populus trichocarpa]	0.836	0.937	0.652	1e-114
356541117	399	PREDICTED: RING-H2 finger protein ATL65-	0.922	0.949	0.625	1e-104
356545341	393	PREDICTED: RING-H2 finger protein ATL65-	0.917	0.959	0.631	1e-103
255556167	402	ring finger protein, putative [Ricinus c	0.888	0.907	0.622	1e-102
357463959	358	RING finger protein [Medicago truncatula	0.807	0.927	0.572	1e-99
297834804	414	hypothetical protein ARALYDRAFT_479408 [	0.871	0.864	0.533	3e-83
15230241	411	RING-H2 finger protein ATL65 [Arabidopsi	0.868	0.868	0.539	3e-81
51971106	411	unknown protein [Arabidopsis thaliana]	0.868	0.868	0.536	8e-81

>gi|449455322|ref|XP_004145402.1| PREDICTED: RING-H2 finger protein ATL65-like [Cucumis sativus] gi|449472703|ref|XP_004153673.1| PREDICTED: RING-H2 finger protein ATL65-like [Cucumis sativus] gi|449532533|ref|XP_004173235.1| PREDICTED: RING-H2 finger protein ATL65-like [Cucumis sativus]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/393 (67%), Positives = 305/393 (77%), Gaps = 37/393 (9%)

Query: 39  TKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRY--- 95
            K PVDFSPPLIAMVVV+ATAFL+VTYSRLISRHL+PP++ + R  +R  RR RRR    
Sbjct: 46  AKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRLA 105

Query: 96  ---YLPSSNGDPLDSPPFYPSPFNHPI-DSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTS 151
              Y+PSS+G  LDS P Y SPF  P  D+F V+SPYGLD+SVIKTIPLS++TAK++   
Sbjct: 106 ARSYIPSSSGGDLDSLP-YDSPFFEPTTDAFHVFSPYGLDESVIKTIPLSVYTAKSRD-- 162

Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP 211
                 R+CAVCLLEFE++DYVRTLP CSH+FHVDCID+WLRSHANCPLCRA +F  ESP
Sbjct: 163 ------RECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESP 216

Query: 212 FVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQ-MPTTTAASTNGSEITPCVDDVAVAIN 270
           F P+MAARIRPSLDD+ L    ++ LE L+E   +P   +     SEITPC+D+      
Sbjct: 217 FTPVMAARIRPSLDDTILR---SIILEPLAEGPPIPNRDSYHATESEITPCIDE-----P 268

Query: 271 NNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFG 330
            N+ + E++ NGRDFLLKRSYSFGFERSLASERM+ E  T SPWRYRRGSFWSKRPSPFG
Sbjct: 269 RNSNSVEDQMNGRDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFG 328

Query: 331 SLTKSRVFSFRHYRGMKSPFLRRR-GFFPLSESSVRFS-----GSSRRSKSMTSPMFPRS 384
           SL K+RVFSFR+YRGMKSPF RRR GFFPLSESS RFS     GSSRRSKSMTSPMF RS
Sbjct: 329 SLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRS 388

Query: 385 S------ASAFSSSRLRCGDPEALLSPDRFNRR 411
           S      A+AFSSSRLRCGDPEALLSP+RFNRR
Sbjct: 389 SVTGGGGAAAFSSSRLRCGDPEALLSPERFNRR 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475158|ref|XP_002281140.2| PREDICTED: RING-H2 finger protein ATL65-like [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 266/415 (64%), Positives = 316/415 (76%), Gaps = 23/415 (5%)

Query: 1   MISLPPAYPPISPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAF 60
           M ++ P+ PP      + +  S SS    S+ N+  + +K PVDFSPPLIAMVVVVATAF
Sbjct: 1   MTAMVPSKPP---EHEFRLGPSPSSFVSTSDTNDYQSPSKVPVDFSPPLIAMVVVVATAF 57

Query: 61  LVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYY-LPSSNGDPLDSPPFYPSPFNHPI 119
           L+VTYSRLISRHLLPP +R+ R W+RW RRRRRR   +PSS GD ++SPP Y   F+   
Sbjct: 58  LIVTYSRLISRHLLPPFLRLLRSWRRWHRRRRRRRSHMPSSAGD-IESPP-YNGSFDA-T 114

Query: 120 DSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGC 179
           ++++V+SPYGLD+SVIKTIPLSL+TAK  +    + ++RDCAVCLLEFE+ND VR LP C
Sbjct: 115 EAYQVFSPYGLDESVIKTIPLSLYTAKGLSKHGFVDDSRDCAVCLLEFEDNDCVRVLPVC 174

Query: 180 SHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLES 239
           SH+FHVDCIDIWLRSHANCPLCRAGIF  ESPF+P+MAARIRPSLDD+ L    ++ LE 
Sbjct: 175 SHAFHVDCIDIWLRSHANCPLCRAGIFRHESPFIPVMAARIRPSLDDAIL---ESILLEP 231

Query: 240 LSEIQMPTTTAASTNGSEITPCVDDVAVAINNNNFNSEERFNGRDFLLKRSYSFGFERSL 299
           LSE        + T  +EI P         +     SE+RFN RDF+LKRSYSFGFER+ 
Sbjct: 232 LSE----AAPESETTVTEIVP------AEPSPRRNQSEDRFNARDFMLKRSYSFGFERNF 281

Query: 300 ASERMVTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRG-FFP 358
            SER+V E  TASPWRYRRGSFWSKRPSPFGSLTKSRVFSFR+YRGMKSPF RRRG FFP
Sbjct: 282 PSERLVMEPATASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRYYRGMKSPFFRRRGSFFP 341

Query: 359 LSESSVRFS--GSSRRSKSMTSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
           LSES  RFS  GSSRR+KS+TSP+F RSSA+A +S+RLRC D EALLSP+RFNRR
Sbjct: 342 LSESHARFSGGGSSRRTKSLTSPIFIRSSATASASTRLRCRDLEALLSPERFNRR 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105475|ref|XP_002313823.1| predicted protein [Populus trichocarpa] gi|222850231|gb|EEE87778.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/383 (65%), Positives = 290/383 (75%), Gaps = 39/383 (10%)

Query: 52  MVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFY 111
           MVVVVA AFL +TYSRLISR LL    R+ RRW+R  RRRRRR Y PSSNG     PP +
Sbjct: 1   MVVVVAAAFLTITYSRLISRSLL----RVIRRWRR-WRRRRRRRYPPSSNGGLDSPPPLF 55

Query: 112 PSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEEND 171
            SP     + F VYSPYGLDD+VIKTIPLSL+T KN  +    ++ +DCAVCLLEFE+++
Sbjct: 56  DSP-----EGFHVYSPYGLDDAVIKTIPLSLYTTKNSNSFH--KQIKDCAVCLLEFEDDE 108

Query: 172 YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQ 231
           YVRTLP CSH+FHVDCIDIWLRSHANCPLCRAGIF  ESPF+P+MAARIRPSLD+ ++L+
Sbjct: 109 YVRTLPVCSHAFHVDCIDIWLRSHANCPLCRAGIFRAESPFIPVMAARIRPSLDE-TILR 167

Query: 232 HVTVSLESLSEIQMPTTTA----ASTNGSEITPCVDDVA---VAINNNNFNSEERFNGRD 284
              + LE + +  + T +A    A+   +EITPC ++ +    ++NN N NSE+RFNGRD
Sbjct: 168 STLLPLEPIIQSPLRTYSAVADTATATVTEITPCPEEPSPRRHSMNNFNTNSEDRFNGRD 227

Query: 285 -FLLKRSYSFGFERSLASERM-VTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRH 342
            F LKRSYSFGFERSLASERM V E  TASPWR+RRG FWSKRPSPFGS++K+RVFSFRH
Sbjct: 228 HFFLKRSYSFGFERSLASERMLVMEPATASPWRFRRGVFWSKRPSPFGSISKARVFSFRH 287

Query: 343 YRGMKSPFLRRR--GFFPLSESSVRFS--------GSSRRSKSMTSPMFPRSSA----SA 388
           YRGMKSPF RRR  GFFPLSE   RFS        GSSRR KSM SP F RSS     +A
Sbjct: 288 YRGMKSPFFRRRGSGFFPLSE---RFSTVGGGGGGGSSRRCKSMASPQFLRSSVGSSMAA 344

Query: 389 FSSSRLRCGDPEALLSPDRFNRR 411
           FSSSRLRCGDPEALLSP+RFNRR
Sbjct: 345 FSSSRLRCGDPEALLSPERFNRR 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541117|ref|XP_003539029.1| PREDICTED: RING-H2 finger protein ATL65-like [Glycine max]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 266/425 (62%), Positives = 298/425 (70%), Gaps = 46/425 (10%)

Query: 3   SLPPAYPPISPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAFLV 62
           S PP + P SP+         S   PPSN+        P VDFSPPLIAMVVVVA AFLV
Sbjct: 5   SQPPHWAP-SPSLTPTPILHKSFFPPPSNS--------PAVDFSPPLIAMVVVVAAAFLV 55

Query: 63  VTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPSPFNHPIDSF 122
           VTYSRLI+RHL PP+        R  RR RRR +LPSS GD L+S P Y SPF+ P    
Sbjct: 56  VTYSRLIARHLRPPI-------HRLLRRFRRRRFLPSSVGD-LESLP-YESPFDGP---- 102

Query: 123 RVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHS 182
            V+SPYGLD++VIKTIP SL+TAK        R   DCAVCLLEFE++DYVRTLP CSH+
Sbjct: 103 HVFSPYGLDETVIKTIPFSLYTAKYDARFDESRN--DCAVCLLEFEDDDYVRTLPICSHT 160

Query: 183 FHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSE 242
           FHVDCID WLRSHANCPLCRAG+  T+SPF P+MAARIRPS DD ++L  +++       
Sbjct: 161 FHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSFDDDTILHRISID----PL 216

Query: 243 IQMPTTTAASTNG-SEITPCVDDVAVAINNN--NFNSEERFNGRDFLLKRSYSFGFERSL 299
           I  P   AA+ +   EITPCVD+ +   N N  N NSE+ F  RDFLLKRSYSFGFERSL
Sbjct: 217 IDPPLLPAAAISSVPEITPCVDENSPRRNQNHANVNSEDCF--RDFLLKRSYSFGFERSL 274

Query: 300 ASERMVTEAVTASPWRYRRG--SFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFF 357
           ASERMV E  TASPWRYRRG  SFWSKRPSPFGSL K RVFSFR+YRGMKSPF RRRGFF
Sbjct: 275 ASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFF 334

Query: 358 PLSE-------SSVRFSGSSRRSKSMTSPMFPRS----SASAFSSSRLRCGDPEALLSPD 406
           PLSE              SSRRSKS+ SPMF RS    SA+AFSSSRLRCGDPEALLSP+
Sbjct: 335 PLSESSVRYGGGGGGGGSSSRRSKSIASPMFLRSSGVTSAAAFSSSRLRCGDPEALLSPE 394

Query: 407 RFNRR 411
           RFN R
Sbjct: 395 RFNGR 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545341|ref|XP_003541102.1| PREDICTED: RING-H2 finger protein ATL65-like [Glycine max]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 267/423 (63%), Positives = 306/423 (72%), Gaps = 46/423 (10%)

Query: 4   LPPAYPPI---SPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAF 60
           +PP+ PP    SPT +      S S  PP++N+       P VDF+PPLIAMVVVVA AF
Sbjct: 2   MPPSQPPHWAPSPTPIL-----SKSFLPPTSNS-------PAVDFTPPLIAMVVVVAAAF 49

Query: 61  LVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPSPFNHPID 120
           LVVTYSRLI+RHL PP+        R  RR RRR +LPSS GD L+S P Y SPF+ P  
Sbjct: 50  LVVTYSRLIARHLRPPV-------HRLLRRFRRRRFLPSSVGD-LESLP-YDSPFDGP-- 98

Query: 121 SFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCS 180
              V+SPYGLD++VIKTIP SL+TAK        R   DCAVCLLEFE+ DYVRTLP CS
Sbjct: 99  --HVFSPYGLDETVIKTIPFSLYTAKYDARFDESRY--DCAVCLLEFEDEDYVRTLPVCS 154

Query: 181 HSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESL 240
           H+FHVDCID WLRSHANCPLCRAG+  T+SPF P+MAARIRPSLDD ++L    +S++ L
Sbjct: 155 HTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSLDDDTILHR--ISIDPL 212

Query: 241 SEI-QMPTTTAASTNGSEITPCVDDVAVAINNN--NFNSEERFNGRDFLLKRSYSFGFER 297
            ++   P +  A ++ SEITPCVD+     N N  N NSE+ F  RDFLLKRSYSFGFER
Sbjct: 213 IDLPPQPASAVAISSVSEITPCVDENTPRRNQNHANVNSEDCF--RDFLLKRSYSFGFER 270

Query: 298 SLASERMVTEAVTASPWRYRRG--SFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRG 355
           SLASERMV E  TASPWRYRRG  SFWSKRPSPFGSL K RVFSFR+YRGMKSPF RRRG
Sbjct: 271 SLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRG 330

Query: 356 FFPLSE---SSVRFSGSSRRSKSMTSPMFPR----SSASAFSSSRLRCGDPEALLSPDRF 408
           FFPLSE          SSRRSKS+ SPMF R    ++A+AFSSSRLRCGDPEALLSP+RF
Sbjct: 331 FFPLSESSVRYGSGGSSSRRSKSIASPMFLRSSGVAAAAAFSSSRLRCGDPEALLSPERF 390

Query: 409 NRR 411
           NRR
Sbjct: 391 NRR 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556167|ref|XP_002519118.1| ring finger protein, putative [Ricinus communis] gi|223541781|gb|EEF43329.1| ring finger protein, putative [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 259/416 (62%), Positives = 294/416 (70%), Gaps = 51/416 (12%)

Query: 10  PISPTTVYDITSSSSSTSPPSNNNNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLI 69
           P++ T+   +  SSSS              K PVDFSPPLIAMVVVVATAFL++TYSRLI
Sbjct: 24  PLAETSTATLNQSSSSL---------QQTAKLPVDFSPPLIAMVVVVATAFLLITYSRLI 74

Query: 70  SRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNG-DPLDSPPFYPSPFNHPIDSFRVYSPY 128
           SR+LL       R  +RW+R R RR YLPSSNG D L+SPP    P     + F VYSPY
Sbjct: 75  SRYLL-------RLLRRWKRWRLRRRYLPSSNGGDDLESPP----PLFDSPEGFHVYSPY 123

Query: 129 GLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCI 188
           GLDDSVIK +PL LFT         ++   DCAVCLLEFEENDYVRTLP CSH+FHVDCI
Sbjct: 124 GLDDSVIKALPLFLFTTTKNGKQSIIK---DCAVCLLEFEENDYVRTLPVCSHAFHVDCI 180

Query: 189 DIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTT 248
           DIWLRSHANCPLCRA IF T SPFVP+MAARIRPSLDD+     + + +ES+ +     T
Sbjct: 181 DIWLRSHANCPLCRARIFQT-SPFVPVMAARIRPSLDDT-----IILPIESMIQ-----T 229

Query: 249 TAASTNGSEITPCVDDVAVAI-NNNNF--NSEERFNGRDFLLKRSYSFGFERSL-ASERM 304
              +   +EI   V++ A  I N++NF   SE+RF+ RDFLLKRSYSFGFERSL ASERM
Sbjct: 230 PPPTVTTTEI---VEEAASPIRNSHNFYIQSEDRFSRRDFLLKRSYSFGFERSLAASERM 286

Query: 305 -VTEAVTASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRHYRGMKSP----FLRRRGFFPL 359
            +TE  TASPWRYRRGSFW KRPSPFGSL+K RVFSFR+YRGMKSP         GFFPL
Sbjct: 287 LITEPATASPWRYRRGSFWGKRPSPFGSLSKPRVFSFRYYRGMKSPFFRRRGGGGGFFPL 346

Query: 360 SE----SSVRFSGSSRRSKSMTSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
           SE          GSSRRSKSM SPMF RSS +AFSSSRLRCGDPEALLSP+RFNRR
Sbjct: 347 SERFPAGGGGGGGSSRRSKSMASPMFMRSSVAAFSSSRLRCGDPEALLSPERFNRR 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463959|ref|XP_003602261.1| RING finger protein [Medicago truncatula] gi|355491309|gb|AES72512.1| RING finger protein [Medicago truncatula]

 Score =  370 bits (949), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 232/405 (57%), Positives = 275/405 (67%), Gaps = 73/405 (18%)

Query: 29  PSNNNNNNNNTKPP------------VDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPP 76
           P+ +  +++  +PP            VDFSPPLIAMVVVVA AF++VTYSRLI+RHL PP
Sbjct: 4   PAQSPMHHHQAQPPYSPLISKPSSSGVDFSPPLIAMVVVVAAAFVLVTYSRLITRHLSPP 63

Query: 77  LIRIFRRWKRWRRRRRRRYYLPSSN--GDPLDSPPFYPSPFNHPIDSFRVYSPYGLDDSV 134
           + R+ +R+ R           PSS+  GD ++S  +  + F  P+        YGLD+S+
Sbjct: 64  IHRLIQRFHR---------PPPSSSSLGD-IESLQYDSTSFETPLT-------YGLDESI 106

Query: 135 IKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS 194
           IKTIP  ++T K +  S+     RDCAVCLLEFE++DYVRTLP CSH+FH+DCID WLRS
Sbjct: 107 IKTIPFFIYTTKYEQESR-----RDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRS 161

Query: 195 HANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTN 254
           HANCPLCR+ + L ESPF P+MAARIRPS  D +   H+                   T 
Sbjct: 162 HANCPLCRS-LLLCESPFRPLMAARIRPSFHDQTNALHL------------------DTP 202

Query: 255 GSEITPCVDDVAVAINNNNFNSEE-RFNGR-DFLLKRSYSFGFERSLASERMVTEAVTAS 312
             EITP          ++  N EE RF  R DFLLKRSYSFGFERSL SERMV +  T S
Sbjct: 203 APEITP----------HSPVNGEENRFTRREDFLLKRSYSFGFERSLPSERMVIDPATTS 252

Query: 313 PWRYRRG--SFWSKRPSPFGSLTKSRVFSFRHYRGMKSPFLRRRGFFPLSESSVRFSG-- 368
           PWRYRRG  SFWSKRPSPFGSL KSRVFSFR+YRGMKSPF RRRGFFPLSESSVR++G  
Sbjct: 253 PWRYRRGSNSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYAGDG 312

Query: 369 --SSRRSKSMTSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
             S RRSKS+ SPMF RSSA+ FSSSRLRCGDPEALLSP+RFNRR
Sbjct: 313 GSSWRRSKSIASPMFSRSSAAVFSSSRLRCGDPEALLSPERFNRR 357

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834804|ref|XP_002885284.1| hypothetical protein ARALYDRAFT_479408 [Arabidopsis lyrata subsp. lyrata] gi|297331124|gb|EFH61543.1| hypothetical protein ARALYDRAFT_479408 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 213/399 (53%), Positives = 254/399 (63%), Gaps = 41/399 (10%)

Query: 36  NNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRY 95
           + ++ PP++FSPPLIAMVV++A AFL VTYSRLISR  L PL R FRRW+  RRR     
Sbjct: 29  SRSSDPPLEFSPPLIAMVVILAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLS 88

Query: 96  YLPSSNGDPLDSPPFYPSPFNHPIDSFRV--YSPYGLDDSVIKTIPLSLFTAKNKTTSKA 153
              S++    D   F P PF    DSF    YSPYGLDDSVIKT+PL L++A   T   A
Sbjct: 89  SASSASTSSSDLRSFSPFPF----DSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKTA 144

Query: 154 LRE-----ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR------ 202
           + +      RDCAVCLLEFEE DYVRTLP C H+FH++CID WLRSH NCPLCR      
Sbjct: 145 VGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

Query: 203 --AGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLE---SLSEIQMPTTTAASTNGSE 257
             AG+    SPFVP+MA RIRPSLDD +    + +  E   S S        A +TN  E
Sbjct: 205 AAAGVITPMSPFVPLMAPRIRPSLDDDAETNAIIIRGEITPSRSSWNTVAAAAVTTNDQE 264

Query: 258 ITPCVDDVAVAINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYR 317
           IT  V++        +  +  RF      LKRSYSF  ER   SER+  E  TASPWRYR
Sbjct: 265 ITASVEE-------QSSPAISRFRE----LKRSYSFECERESESERVTMEPATASPWRYR 313

Query: 318 RGSFWSKRPSPFGSL-TKSRVFSFRHYRGMKSPFLRRRG----FFPLSESSVRFSGSSRR 372
           R + W+KR SPFG+L +KSRVFSFR+YR  KSPF RRR     F+P+SE       SSRR
Sbjct: 314 RST-WNKRQSPFGNLISKSRVFSFRYYRSTKSPFFRRRSSAGVFYPISERIPATGSSSRR 372

Query: 373 SKSMTSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
           +KSMTSPMF R++    SSSRLRCGDPEALLSP+R+ RR
Sbjct: 373 TKSMTSPMFFRTAPH--SSSRLRCGDPEALLSPERWRRR 409

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230241|ref|NP_188523.1| RING-H2 finger protein ATL65 [Arabidopsis thaliana] gi|42572481|ref|NP_974336.1| RING-H2 finger protein ATL65 [Arabidopsis thaliana] gi|68565164|sp|Q67YI6.2|ATL65_ARATH RecName: Full=RING-H2 finger protein ATL65 gi|9280310|dbj|BAB01689.1| unnamed protein product [Arabidopsis thaliana] gi|20258806|gb|AAM13984.1| unknown protein [Arabidopsis thaliana] gi|21689663|gb|AAM67453.1| unknown protein [Arabidopsis thaliana] gi|22531227|gb|AAM97117.1| unknown protein [Arabidopsis thaliana] gi|30725686|gb|AAP37865.1| At3g18930 [Arabidopsis thaliana] gi|51969336|dbj|BAD43360.1| unknown protein [Arabidopsis thaliana] gi|332642648|gb|AEE76169.1| RING-H2 finger protein ATL65 [Arabidopsis thaliana] gi|332642649|gb|AEE76170.1| RING-H2 finger protein ATL65 [Arabidopsis thaliana]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 213/395 (53%), Positives = 252/395 (63%), Gaps = 38/395 (9%)

Query: 36  NNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRY 95
           + ++ PP++FSPPLIAMVVV+A AFL VTYSRLISR  L PL R FRRW+  RRR     
Sbjct: 29  SRSSDPPLEFSPPLIAMVVVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLS 88

Query: 96  YLPSSNGDPLDSPPFYPSPFNHPIDSFRV--YSPYGLDDSVIKTIPLSLFTAKNKTTSKA 153
              S++    D   F P PF    DSF    YSPYGLDDSVIKT+PL L++A   T   A
Sbjct: 89  SASSASTSSSDLRSFSPFPF----DSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPA 144

Query: 154 LRE-----ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR------ 202
           + +      RDCAVCLLEFEE DYVRTLP C H+FH++CID WLRSH NCPLCR      
Sbjct: 145 VGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

Query: 203 AGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCV 262
           AG+    SPFVP+MA RIRPSLDD      +     + S     T  A +TN  EI   V
Sbjct: 205 AGVLTPMSPFVPLMAPRIRPSLDDEENNAIIIRGEITPSRSNWNTIAADTTNDQEIRASV 264

Query: 263 DDVAV-AINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSF 321
           ++ +  AI+        RF      LKRSYSF  ER   SER+  E  T SPWRYRR + 
Sbjct: 265 EEQSSPAIS--------RFRE----LKRSYSFECERESESERVTMEPATVSPWRYRRST- 311

Query: 322 WSKRPSPFGSL-TKSRVFSFRHYRGMKSPFLRRRG----FFPLSESSVRFSGSSRRSKSM 376
           W+KR SPFG+L +KSRVFSFR+YR  KSPF RRR     F+P+SE       SSRR+KSM
Sbjct: 312 WNKRQSPFGNLISKSRVFSFRYYRSTKSPFFRRRSSAGVFYPISERIPATGSSSRRTKSM 371

Query: 377 TSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
           TSPMF R++    SSSRLRCGDPEALLSP+R+ RR
Sbjct: 372 TSPMFFRTAPH--SSSRLRCGDPEALLSPERWRRR 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971106|dbj|BAD44245.1| unknown protein [Arabidopsis thaliana]

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 212/395 (53%), Positives = 252/395 (63%), Gaps = 38/395 (9%)

Query: 36  NNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRY 95
           + ++ PP++FSPPLIAMVVV+A AFL VTYSRLISR  L PL R FRRW+  RRR     
Sbjct: 29  SRSSDPPLEFSPPLIAMVVVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLS 88

Query: 96  YLPSSNGDPLDSPPFYPSPFNHPIDSFRV--YSPYGLDDSVIKTIPLSLFTAKNKTTSKA 153
              S++    D   F P PF    DSF    YSPYGLDDSVIKT+PL L++A   T   A
Sbjct: 89  SASSASTSSSDLRSFSPFPF----DSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPA 144

Query: 154 LRE-----ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR------ 202
           + +      RDCAVCLLEFEE DYVRTLP C H+FH++CID WLRSH NCPLCR      
Sbjct: 145 VGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGS 204

Query: 203 AGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCV 262
           AG+    SPFVP+MA RIRPSLDD      +     + S     T  A +TN  EI   V
Sbjct: 205 AGVLTPMSPFVPLMAPRIRPSLDDEENNAIIIRGEITPSRSNWNTIAADTTNDQEIRASV 264

Query: 263 DDVAV-AINNNNFNSEERFNGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSF 321
           ++ +  AI+        RF      LKRSYSF  ER   SER+  E  T SPWRYRR + 
Sbjct: 265 EEQSSPAIS--------RFRE----LKRSYSFECERESESERVTMEPATVSPWRYRRST- 311

Query: 322 WSKRPSPFGSL-TKSRVFSFRHYRGMKSPFLRRRG----FFPLSESSVRFSGSSRRSKSM 376
           W+KR SPFG+L ++SRVFSFR+YR  KSPF RRR     F+P+SE       SSRR+KSM
Sbjct: 312 WNKRQSPFGNLISRSRVFSFRYYRSTKSPFFRRRSSAGVFYPISERIPATGSSSRRTKSM 371

Query: 377 TSPMFPRSSASAFSSSRLRCGDPEALLSPDRFNRR 411
           TSPMF R++    SSSRLRCGDPEALLSP+R+ RR
Sbjct: 372 TSPMFFRTAPH--SSSRLRCGDPEALLSPERWRRR 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2085914	411	AT3G18930 [Arabidopsis thalian	0.858	0.858	0.457	4.8e-71
TAIR|locus:2096444	356	AT3G03550 [Arabidopsis thalian	0.197	0.227	0.488	1.2e-18
TAIR|locus:2081740	257	ATL5 "AtL5" [Arabidopsis thali	0.316	0.505	0.375	1.7e-18
TAIR|locus:2062008	227	AT2G47560 [Arabidopsis thalian	0.187	0.339	0.493	7.5e-18
TAIR|locus:2018334	381	AT1G04360 [Arabidopsis thalian	0.240	0.259	0.390	2.4e-17
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.316	0.359	0.35	3e-17
TAIR|locus:505006547	367	AT4G33565 [Arabidopsis thalian	0.209	0.234	0.468	1.1e-16
TAIR|locus:2199902	369	AT1G23980 [Arabidopsis thalian	0.253	0.281	0.410	1.2e-16
TAIR|locus:2089398	304	ATL2 "TOXICOS EN LEVADURA 2" [	0.180	0.243	0.5	1.2e-16
UNIPROTKB|Q7XLY8	383	LOC_Os04g50100 "E3 ubiquitin-p	0.311	0.334	0.391	4.9e-16

TAIR|locus:2085914 AT3G18930 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 178/389 (45%), Positives = 208/389 (53%)

Query:    41 PPVDFSPPLIAMXXXXXXXXXXXXYSRLISRHLLPPLIRIFXXXXXXXXXXXXXYYLPSS 100
             PP++FSPPLIAM            YSRLISR  L PL R F                 S+
Sbjct:    34 PPLEFSPPLIAMVVVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLSSASSA 93

Query:   101 NGDPLDSPPFYPSPFNHPIDSFRV--YSPYGLDDSVIKTIPLSLFTAKNKTTSKALREA- 157
             +    D   F  SPF  P DSF    YSPYGLDDSVIKT+PL L++A   T   A+ +  
Sbjct:    94 STSSSDLRSF--SPF--PFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTS 149

Query:   158 ----RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR------AGIFL 207
                 RDCAVCLLEFEE DYVRTLP C H+FH++CID WLRSH NCPLCR      AG+  
Sbjct:   150 AANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGVLT 209

Query:   208 TESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDDVAV 267
               SPFVP+MA RIRPSLDD      +     + S     T  A +TN  EI   V++ + 
Sbjct:   210 PMSPFVPLMAPRIRPSLDDEENNAIIIRGEITPSRSNWNTIAADTTNDQEIRASVEEQSS 269

Query:   268 AIXXXXXXXXXXXXGRDFLLKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPS 327
                            R+  LKRSYSF  ER   SER+  E  T SPWRYRR S W+KR S
Sbjct:   270 PAISRF---------RE--LKRSYSFECERESESERVTMEPATVSPWRYRR-STWNKRQS 317

Query:   328 PFGSL-TKSRVFSFRHYRGMKSPFLRRRG----FFPLXXXXXXXXXXXXXXXXXXXXXXX 382
             PFG+L +KSRVFSFR+YR  KSPF RRR     F+P+                       
Sbjct:   318 PFGNLISKSRVFSFRYYRSTKSPFFRRRSSAGVFYPISERIPATGSSSRRTKSMTSPMFF 377

Query:   383 XXXXXXXXXXXLRCGDPEALLSPDRFNRR 411
                        LRCGDPEALLSP+R+ RR
Sbjct:   378 RTAPHSSSR--LRCGDPEALLSPERWRRR 404

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2096444 AT3G03550 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 43/88 (48%), Positives = 60/88 (68%)

Query:   129 GLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCI 188
             GLD+S+IK+I +  +   +        E+ DC+VCL EF+EN+ +R LP C+H+FHV CI
Sbjct:   133 GLDESLIKSITVYKYRKMD-----GFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCI 187

Query:   189 DIWLRSHANCPLCRAGIFLTESPFVPIM 216
             D WL+SH+NCPLCRA  F+  S  V I+
Sbjct:   188 DTWLKSHSNCPLCRA--FIVTSSAVEIV 213

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2081740 ATL5 "AtL5" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 53/141 (37%), Positives = 78/141 (55%)

Query:   118 PIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLP 177
             P  S    SP  LD +V++ IP+ +++ K  T    L E   C+VCL EFEE+D  R LP
Sbjct:    78 PTQSSSSLSP--LDPTVLEKIPIFVYSVK--THESPLEE---CSVCLSEFEEDDEGRVLP 130

Query:   178 GCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSL 237
              C H FHVDCID W RS ++CPLCRA +   +    P   A + PS+     ++      
Sbjct:   131 KCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKP---IEDTEAGS 187

Query:   238 ESLSEIQMPTTTAASTNGSEI 258
              S S+ +  ++T +S++GS +
Sbjct:   188 SSSSD-ESESSTPSSSSGSPV 207

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2062008 AT2G47560 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/83 (49%), Positives = 54/83 (65%)

Query:   130 LDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCID 189
             LD +V+  IP+ ++++KN    +   E  +C+VCL EFEE D  R LP C HSFHVDCID
Sbjct:    81 LDQAVLDKIPIFVYSSKNPPPPE---EKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCID 137

Query:   190 IWLRSHANCPLCRAGIFLTESPF 212
              W RS + CPLCRA +   + PF
Sbjct:   138 TWFRSRSTCPLCRAPV---QPPF 157

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2018334 AT1G04360 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 41/105 (39%), Positives = 67/105 (63%)

Query:   124 VYSPY----GLDDSVIKTIPLSLFTAKNKTTSKA--LREARDCAVCLLEFEENDYVRTLP 177
             +YSP+    GLD+S I+ IP+  F  ++    +    + +++C+VCL EF+E++ +R +P
Sbjct:    92 IYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIP 151

Query:   178 GCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRP 222
              C H FH+DCIDIWL+ +ANCPLCR  +    S  + +++A   P
Sbjct:   152 NCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSP 196

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 49/140 (35%), Positives = 76/140 (54%)

Query:   129 GLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCI 188
             GL++S+IK+I     T     +     +  DC+VCL EFEEN+ +R LP C+H+FH+ CI
Sbjct:   116 GLNESMIKSI-----TVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCI 170

Query:   189 DIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDDSSLLQHVTVSLESLSEIQMPTT 248
             D WL+SH+NCPLCRA +    +P   +    +   + + S   H T    S+SEI +   
Sbjct:   171 DTWLKSHSNCPLCRAFVTGVNNPTASV-GQNVSVVVANQSNSAHQT---GSVSEINLNLA 226

Query:   249 TAASTNGS-EITPCVDDVAV 267
                S  G  +    ++D+ +
Sbjct:   227 GYESQTGDFDSVVVIEDLEI 246

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:505006547 AT4G33565 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:   112 PSPF--NHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEE 169
             P+P   +HPI   R     GL+ +VI +I +  ++ K+        E  DC+VCL EFEE
Sbjct:   175 PAPVIVDHPIWHIRTI---GLNPTVISSIKVCQYSKKDGVV-----EGTDCSVCLSEFEE 226

Query:   170 NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
              + +R LP C H+FH+ CID WLRSH NCPLCRA I
Sbjct:   227 EETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2199902 AT1G23980 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 46/112 (41%), Positives = 65/112 (58%)

Query:    97 LPSSNGDPLDSPPFYPSP-FNHPIDS-FRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKAL 154
             L SS  +   +P F  S  +   +   F ++   GLD ++I  +P+ L+        K  
Sbjct:    85 LSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDS-GLDQALIDALPVFLYKE-----IKGT 138

Query:   155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206
             +E  DCAVCL EF E+D +R LP CSH+FH+DCID WL S++ CPLCR  +F
Sbjct:   139 KEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLF 190

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2089398 ATL2 "TOXICOS EN LEVADURA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query:   124 VYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSF 183
             V +  GLD +VIK++P+  FT  ++T    +    +CAVCL EFEE++  R LP C H+F
Sbjct:    89 VVASRGLDPNVIKSLPV--FTFSDETHKDPI----ECAVCLSEFEESETGRVLPNCQHTF 142

Query:   184 HVDCIDIWLRSHANCPLCRA 203
             HVDCID+W  SH+ CPLCR+
Sbjct:   143 HVDCIDMWFHSHSTCPLCRS 162

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q7XLY8 LOC_Os04g50100 "E3 ubiquitin-protein ligase Os04g0590900" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 217 (81.4 bits), Expect = 4.9e-16, P = 4.9e-16
 Identities = 54/138 (39%), Positives = 75/138 (54%)

Query:   120 DSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGC 179
             +S+ V  P GLD+++I  I +  +   +           DC+VCL EF + + +R LP C
Sbjct:   122 ESWNVSPPSGLDETLINKITVCKYRRGD-----GFVHTTDCSVCLGEFSDGESLRLLPRC 176

Query:   180 SHSFHVDCIDIWLRSHANCPLCRAGI-FLT---ESPFVPIMAARIRPSLDDSSLLQHVTV 235
             SH+FH  CID WL+SH+NCPLCRA I F+T    SP  P   A      D++  +  V  
Sbjct:   177 SHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLASP-EPEGCAPGETGGDNTHEVVVVMD 235

Query:   236 SLESLSEIQMPTTTAAST 253
              LE+L E Q    + AST
Sbjct:   236 GLENLCEEQQEAVSRAST 253

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67YI6	ATL65_ARATH	No assigned EC number	0.5392	0.8686	0.8686	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090569 hypothetical protein (367 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-12
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-11
smart00184	40	smart00184, RING, Ring finger	1e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	1e-07
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	6e-06
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	2e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	3e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	4e-04
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	0.002
pfam12906	47	pfam12906, RINGv, RING-variant domain	0.003
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
            +C +CL EFE  + V  LP C H FH +C+D WLRS   CPLCRA
Sbjct: 1   DECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGI 205
           +C +CL EF E      L  C H F   CID WL+S    CPLCR  I
Sbjct: 1   ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 159 DCAVCLLEFEENDYVRTLPG---------CSHSFHVDCIDIWLRSHANCPLCR 202
            CA+C   F+        PG         C H+FH+ CI  WL++   CPLCR
Sbjct: 21  VCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLC 201
           C +CL E+ ++     LP C H+F   CI  WL S  N CP+C
Sbjct: 1   CPICLEEYLKD--PVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGI 205
           +CA+C+  F +ND +R LP C H FHV C+D WL  ++N CP+CR  I
Sbjct: 325 ECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 156 EARDCAVCLLEFEE----NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG-IFLTES 210
           + ++CA+C+ +  +    N Y   L  C+H F ++CIDIW +    CP+CR   I + +S
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS 232

Query: 211 PFVP 214
            F  
Sbjct: 233 RFFT 236

Length = 238

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
           E  +C +CL      D V   P C H F  +CI  +L+  + CP+CR 
Sbjct: 1   EELECPICLDLLR--DPVVLTP-CGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLC 201
           C +CL E +  D V  LP C H F   CI  WL S +  CPLC
Sbjct: 1   CPICLEEPK--DPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 179 CSHSFHVDCIDIWLRSHANCPLCR 202
           C+H+FH  CI  WL +   CPL R
Sbjct: 54  CNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 158  RDCAVCLLEFEENDYVRTLPG-----CSHSFHVDCIDIWLRSHA--NCPLCRAGI 205
             +CA+C    +  D  R+LP      C + FH  C+  W  S A  NCPLCR+ I
Sbjct: 1470 EECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 12/55 (21%)

Query: 160 CAVCLLEFEENDYVRTLPG---------CSHSFHVDCIDIWLR---SHANCPLCR 202
           C +C + F+        PG         C H+FH+ CI  WL    S   CP+CR
Sbjct: 24  CGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 158 RDCAVCL-----LEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA------NCPLCR 202
           ++C +C         E + Y   L  C+H F + CI+IW R+        NCP+CR
Sbjct: 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICR 226

Length = 242

>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 160 CAVCLLEFEENDYVRTLPGCS---HSFHVDCIDIWLRSHAN--CPLC 201
           C +CL   EE++ +     C       H  C++ WL++  N  C +C
Sbjct: 1   CRICLEGEEEDEPLIRPCRCRGSLKYVHQSCLERWLKTSGNTTCEIC 47

Length = 47

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 158 RDCAVCLLEFEENDYVRTLPG---------CSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208
           R C +C+ E    D+     G         C H  H+ C+  WL     CP+CR  +   
Sbjct: 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD 347

Query: 209 ESPFVP 214
           +S   P
Sbjct: 348 QSSPTP 353

Length = 491

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.72
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.44
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.4
PHA02929	238	N1R/p28-like protein; Provisional	99.2
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.17
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.16
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.89
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.88
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.83
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.81
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.78
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.77
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.76
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.72
PHA02926	242	zinc finger-like protein; Provisional	98.68
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.55
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.55
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.52
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.52
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.49
PF14634	44	zf-RING_5: zinc-RING finger domain	98.48
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.39
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.29
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.23
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.2
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.15
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.08
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.05
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.97
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.92
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.92
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.9
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.84
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.84
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.82
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.81
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.79
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.77
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.75
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.72
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.66
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.49
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.36
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.33
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.17
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.17
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.11
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.68
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.57
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.49
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.44
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.44
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.4
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.08
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.04
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.95
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.85
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.79
COG5152	259	Uncharacterized conserved protein, contains RING a	95.71
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.57
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.41
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.39
KOG2660	331	consensus Locus-specific chromosome binding protei	95.37
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.21
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.12
PHA03096	284	p28-like protein; Provisional	95.12
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.08
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.01
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.0
PHA02862	156	5L protein; Provisional	94.75
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.51
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.41
PF04641	260	Rtf2: Rtf2 RING-finger	93.76
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.67
KOG4739	233	consensus Uncharacterized protein involved in syna	93.18
KOG1940	276	consensus Zn-finger protein [General function pred	92.89
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.68
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.32
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.28
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	92.26
KOG0298	1394	consensus DEAD box-containing helicase-like transc	92.15
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.11
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.69
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	91.48
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.45
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	90.95
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	90.32
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	90.29
PF15102	146	TMEM154: TMEM154 protein family	89.98
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.69
PF05399	227	EVI2A: Ectropic viral integration site 2A protein	89.59
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	89.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	88.73
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	88.68
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.12
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	86.44
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	85.97
KOG1609	323	consensus Protein involved in mRNA turnover and st	85.89
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	85.84
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	84.42
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	84.3
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	83.75
KOG0269	839	consensus WD40 repeat-containing protein [Function	81.76
PF07010	259	Endomucin: Endomucin; InterPro: IPR010740 This fam	81.39
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	80.09

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.2e-17  Score=164.37  Aligned_cols=75  Identities=39%  Similarity=0.881  Sum_probs=64.4

Q ss_pred             CCCCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCC-CCccCcCcc
Q 015232          128 YGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIF  206 (411)
Q Consensus       128 ~gls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~t-CPlCR~~i~  206 (411)
                      .++.+..++++|...|.......     ..+.|+||||+|+.+|++++|| |+|.||..||++||.++.+ ||+||+++.
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~-----~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDED-----ATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccC-----CCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            46788999999999998775431     2269999999999999999999 9999999999999987755 999999875


Q ss_pred             CC
Q 015232          207 LT  208 (411)
Q Consensus       207 ~~  208 (411)
                      ..
T Consensus       279 ~~  280 (348)
T KOG4628|consen  279 TD  280 (348)
T ss_pred             CC
Confidence            43

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.44  E-value=4.3e-14  Score=101.63  Aligned_cols=44  Identities=48%  Similarity=1.228  Sum_probs=40.3

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR  202 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR  202 (411)
                      ++|+||+++|..++.++.++ |||+||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999999999998 999999999999999999999997

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.4e-12  Score=130.37  Aligned_cols=56  Identities=32%  Similarity=0.922  Sum_probs=47.1

Q ss_pred             cCCCcccccccc-cccC---------ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCCC
Q 015232          155 REARDCAVCLLE-FEEN---------DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP  211 (411)
Q Consensus       155 ~~~~~C~ICle~-f~~~---------~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~~  211 (411)
                      .++..|.||+|+ |+.+         .+.+.|| |||++|.+|++.|++++++||+||.++..++..
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~~  350 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQSS  350 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence            578899999999 5544         2457888 999999999999999999999999997655443

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.20  E-value=1.1e-11  Score=119.50  Aligned_cols=77  Identities=27%  Similarity=0.647  Sum_probs=58.4

Q ss_pred             CCCCCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCce----EEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232          127 PYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDY----VRTLPGCSHSFHVDCIDIWLRSHANCPLCR  202 (411)
Q Consensus       127 ~~gls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~----~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR  202 (411)
                      ..+..+..++.+|.....-...   .....+.+|+||++.+.+++.    +.+++.|+|.||..||..|+..+.+||+||
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~---~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR  223 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKL---YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR  223 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhh---hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCC
Confidence            4567888999999876543221   112456899999999876531    234555999999999999999999999999


Q ss_pred             cCcc
Q 015232          203 AGIF  206 (411)
Q Consensus       203 ~~i~  206 (411)
                      ..+.
T Consensus       224 ~~~~  227 (238)
T PHA02929        224 TPFI  227 (238)
T ss_pred             CEee
Confidence            9874

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.17  E-value=2e-11  Score=97.55  Aligned_cols=46  Identities=39%  Similarity=0.956  Sum_probs=36.5

Q ss_pred             CCCcccccccccccC----------ceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232          156 EARDCAVCLLEFEEN----------DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR  202 (411)
Q Consensus       156 ~~~~C~ICle~f~~~----------~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR  202 (411)
                      .++.|+||++.+.+.          -.+...+ |||.||..||.+||+.+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            455699999999432          2344555 999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.9e-11  Score=119.73  Aligned_cols=51  Identities=45%  Similarity=1.089  Sum_probs=46.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~  206 (411)
                      ....+|+|||++|..++++++|| |+|.||..|+++|+. -+..||+||+.|.
T Consensus       321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCC
Confidence            45689999999999999999999 999999999999997 4557999999875

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.5e-09  Score=103.25  Aligned_cols=61  Identities=26%  Similarity=0.653  Sum_probs=46.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC---CCCCccCcCccCCCCCCchhhhhhcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH---ANCPLCRAGIFLTESPFVPIMAARIR  221 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~i~~~~~~~~~~~~~~~~  221 (411)
                      ....+|.||||.-+++   +++. |||.||..||.+||+.+   +.||+||..|..  ..++|....+..
T Consensus        45 ~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~--~~vvPlYGrG~~  108 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI--DTVVPLYGRGSK  108 (230)
T ss_pred             CCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCcccccccc--ceEEeeeccCCC
Confidence            5678999999996665   4444 99999999999999643   349999998854  455666665554

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.88  E-value=1.3e-09  Score=101.75  Aligned_cols=49  Identities=27%  Similarity=0.691  Sum_probs=40.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----------------CCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----------------HANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----------------~~tCPlCR~~i~~  207 (411)
                      .++.+|+||++.++++   ++++ |||+||..||..|+..                +..||+||..|..
T Consensus        16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            4578999999998775   5566 9999999999999842                2469999998854

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.83  E-value=2.1e-09  Score=88.09  Aligned_cols=52  Identities=33%  Similarity=0.831  Sum_probs=39.8

Q ss_pred             CCCccccccccccc--------Cc-eEEEcCCCCceechhHHHHHHhc---CCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEE--------ND-YVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~--------~~-~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~i~~  207 (411)
                      .++.|.||...|+.        ++ -..++..|+|.||..||.+||..   +.+||+||+....
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            47889999999973        22 12334459999999999999964   4579999998644

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.81  E-value=3.9e-09  Score=73.71  Aligned_cols=44  Identities=52%  Similarity=1.195  Sum_probs=36.3

Q ss_pred             cccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCc
Q 015232          159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGI  205 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i  205 (411)
                      +|+||++.+  .+.+.+.+ |||.||..|++.|+.. +..||+|+..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  33455555 9999999999999987 67799998753

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.78  E-value=5.8e-09  Score=73.20  Aligned_cols=39  Identities=41%  Similarity=1.075  Sum_probs=32.8

Q ss_pred             ccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCcc
Q 015232          160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC  201 (411)
Q Consensus       160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlC  201 (411)
                      |+||++.+.+  .+++++ |||+||..||..|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999877  356676 99999999999999888899998

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.5e-09  Score=103.61  Aligned_cols=50  Identities=34%  Similarity=0.792  Sum_probs=42.9

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .....|.+|||..+++   --+| |||+||..||.+|...+..||+||..+...
T Consensus       237 ~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            3457899999998776   4666 999999999999999999999999987554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.76  E-value=4.8e-09  Score=77.40  Aligned_cols=46  Identities=33%  Similarity=0.846  Sum_probs=38.7

Q ss_pred             CCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +..|.||++...+   +..+| |||. |+..|+..|+.....||+||.+|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4679999998654   57777 9999 999999999999999999999873

...

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.8e-09  Score=113.11  Aligned_cols=52  Identities=31%  Similarity=0.836  Sum_probs=46.1

Q ss_pred             cCCCcccccccccccCce--EEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDY--VRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~--~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      ..+..|+||+|++..+++  .+.++ |+|+||..|+..|++++++||+||..+..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            568899999999988765  67888 99999999999999999999999995543

>PHA02926 zinc finger-like protein; Provisional

Probab=98.68  E-value=1e-08  Score=97.38  Aligned_cols=52  Identities=33%  Similarity=0.903  Sum_probs=39.9

Q ss_pred             cCCCcccccccccccC-----ceEEEcCCCCceechhHHHHHHhcC------CCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEN-----DYVRTLPGCSHSFHVDCIDIWLRSH------ANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~-----~~~~~Lp~C~H~FH~~CI~~Wl~~~------~tCPlCR~~i~  206 (411)
                      ..+.+|+||||..-+.     ..-.+|+.|+|.||..||..|...+      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4578999999986432     1234666799999999999998643      35999998764

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.55  E-value=4.9e-08  Score=70.00  Aligned_cols=38  Identities=37%  Similarity=0.968  Sum_probs=29.2

Q ss_pred             ccccccccccCceEEEcCCCCceechhHHHHHHhcC----CCCCcc
Q 015232          160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----ANCPLC  201 (411)
Q Consensus       160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----~tCPlC  201 (411)
                      |+||++.|+++   +.|+ |||.|+..||..|.+..    ..||+|
T Consensus         1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999887   7787 99999999999998543    359988

>smart00504 Ubox Modified RING finger domain

Probab=98.55  E-value=7.6e-08  Score=73.38  Aligned_cols=46  Identities=22%  Similarity=0.429  Sum_probs=40.4

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      ..|+||++.++++   .+++ |||+|+..||..|+..+.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4699999999886   5666 99999999999999888899999988743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=4.3e-08  Score=90.15  Aligned_cols=52  Identities=31%  Similarity=0.648  Sum_probs=42.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      +....|+|||+.+...  +.+-.+|||+||..||+.-+.....||+|+..|...
T Consensus       129 ~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            4557899999998765  334345999999999999999999999999877554

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.52  E-value=6.9e-08  Score=67.94  Aligned_cols=39  Identities=51%  Similarity=1.242  Sum_probs=33.0

Q ss_pred             ccccccccccCceEEEcCCCCceechhHHHHHHh--cCCCCCcc
Q 015232          160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR--SHANCPLC  201 (411)
Q Consensus       160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlC  201 (411)
                      |+||++.+.+.  ..+++ |||.||..||..|+.  ....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999998775  35676 999999999999998  55569998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.49  E-value=9.2e-08  Score=64.39  Aligned_cols=38  Identities=42%  Similarity=1.152  Sum_probs=32.0

Q ss_pred             ccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCcc
Q 015232          160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLC  201 (411)
Q Consensus       160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlC  201 (411)
                      |+||++..   ....+++ |||.||..|++.|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999983   3457777 999999999999997 66679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.48  E-value=9.1e-08  Score=68.94  Aligned_cols=44  Identities=27%  Similarity=0.779  Sum_probs=37.7

Q ss_pred             cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCc
Q 015232          159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA  203 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~  203 (411)
                      .|.||++.|.+.....+++ |||+||..|+..+......||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996556677887 9999999999999866678999974

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.39  E-value=1.6e-07  Score=96.78  Aligned_cols=50  Identities=32%  Similarity=0.601  Sum_probs=43.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      +....|+||++.|..+   ++++ |||.||..||..|+.....||+|+..+...
T Consensus        24 e~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            4677999999999776   4666 999999999999998888899999987543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.4e-06  Score=88.92  Aligned_cols=51  Identities=29%  Similarity=0.792  Sum_probs=39.1

Q ss_pred             cCCCcccccccccccCc---e-----------EEEcCCCCceechhHHHHHHh-cCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEND---Y-----------VRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~---~-----------~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~  206 (411)
                      ....+|+|||..+.--.   .           -.+.| |.|+||..|++.|+. .+-.||+||+++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            45679999999875311   1           12346 999999999999998 5558999999874

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.29  E-value=4.9e-07  Score=73.04  Aligned_cols=50  Identities=32%  Similarity=0.680  Sum_probs=35.2

Q ss_pred             cccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          159 DCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       159 ~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .|+-|+..+..++ -..+...|+|.||..||..||..+..||+|++.....
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            3444444443444 2333334999999999999999999999999886543

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.9e-07  Score=74.78  Aligned_cols=52  Identities=31%  Similarity=0.806  Sum_probs=38.3

Q ss_pred             CCCccccccccccc--------C-ceEEEcCCCCceechhHHHHHHhc---CCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEE--------N-DYVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~--------~-~~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~i~~  207 (411)
                      .++.|-||...|..        + +-..++..|.|.||..||.+|+..   +..||+||+....
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            45589999998864        1 222344459999999999999954   4459999987643

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=6.6e-07  Score=86.92  Aligned_cols=52  Identities=35%  Similarity=0.807  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHH-HHhcCCC-CCccCcCccCCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI-WLRSHAN-CPLCRAGIFLTES  210 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~-Wl~~~~t-CPlCR~~i~~~~~  210 (411)
                      ..+..|.||++.....   ..++ |||+||..||.. |-..+.. ||+||+.+...+.
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            4578899999987665   5566 999999999998 9766655 9999998766543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=5e-07  Score=87.93  Aligned_cols=52  Identities=31%  Similarity=0.657  Sum_probs=42.7

Q ss_pred             cCCCcccccccccccCc-------eEEEcCCCCceechhHHHHHH--hcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEEND-------YVRTLPGCSHSFHVDCIDIWL--RSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~-------~~~~Lp~C~H~FH~~CI~~Wl--~~~~tCPlCR~~i~~  207 (411)
                      .++..|+||-..+....       +.-.|. |+|+||..||.-|.  ..+++||.||..+..
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            56789999988886654       566787 99999999999995  567789999987743

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.7e-06  Score=90.67  Aligned_cols=54  Identities=28%  Similarity=0.512  Sum_probs=40.9

Q ss_pred             CCcccccccccccCceEEEcCCCCceechhHHHHHHhc-----CCCCCccCcCccCCCCCCch
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-----HANCPLCRAGIFLTESPFVP  214 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~i~~~~~~~~~  214 (411)
                      +..|+|||+.....   ..+. |||+||..||-.++..     ...||+|+..|...+...+.
T Consensus       186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            77899999986554   3444 9999999999877643     34599999998876655443

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.05  E-value=3.5e-06  Score=60.92  Aligned_cols=34  Identities=29%  Similarity=0.737  Sum_probs=21.5

Q ss_pred             ccccccccccC-ceEEEcCCCCceechhHHHHHHhcC
Q 015232          160 CAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSH  195 (411)
Q Consensus       160 C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~  195 (411)
                      |+||+| |.+. ...++|+ |||+|+.+||+.++...
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence            899999 7554 4568898 99999999999998743

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.97  E-value=5.5e-06  Score=61.41  Aligned_cols=42  Identities=24%  Similarity=0.756  Sum_probs=32.0

Q ss_pred             cccccccccccCceEEEcCCCC-----ceechhHHHHHHhc--CCCCCccC
Q 015232          159 DCAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLRS--HANCPLCR  202 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~~--~~tCPlCR  202 (411)
                      .|-||++.. +++...+.| |.     |.+|..|++.|+..  +.+||+|+
T Consensus         1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            489999943 334445677 85     99999999999954  44799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.92  E-value=2.2e-06  Score=93.08  Aligned_cols=50  Identities=22%  Similarity=0.483  Sum_probs=42.6

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ....|++||..+.++......+ |+|+||..||+.|-..-++||+||..+.
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence            3467999999988876666666 9999999999999999999999998653

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.92  E-value=6.3e-06  Score=65.67  Aligned_cols=49  Identities=18%  Similarity=0.378  Sum_probs=37.8

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~  208 (411)
                      +...|+||.+.|.++   ++++ |||.|...||+.|+.. +.+||+|+..+...
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            356799999999887   6777 9999999999999987 88899998887543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=5.2e-06  Score=70.24  Aligned_cols=50  Identities=28%  Similarity=0.702  Sum_probs=37.1

Q ss_pred             CCCccccccccc-------------ccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          156 EARDCAVCLLEF-------------EENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       156 ~~~~C~ICle~f-------------~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      ..+.|+||..-+             ...+-.+....|+|.||..||..||+.++.||+|..+.
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            456788876543             12233444445999999999999999999999997764

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=5.2e-06  Score=78.03  Aligned_cols=44  Identities=36%  Similarity=0.854  Sum_probs=39.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR  202 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR  202 (411)
                      .+...|+||++.|..+   .+++ |+|.||..||..+......||.||
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            5778999999999998   7887 999999999998877555699999

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.84  E-value=1.1e-05  Score=80.63  Aligned_cols=52  Identities=19%  Similarity=0.517  Sum_probs=37.6

Q ss_pred             CCcccccccccc-cCc-eEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCCC
Q 015232          157 ARDCAVCLLEFE-END-YVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLTE  209 (411)
Q Consensus       157 ~~~C~ICle~f~-~~~-~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~~  209 (411)
                      +..|+||+.+-- .++ ++.+.+ |||.||..||+..+ .....||.|+..+...+
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            468999999632 333 333444 99999999999854 55667999998775543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.84  E-value=5.1e-06  Score=83.23  Aligned_cols=50  Identities=28%  Similarity=0.653  Sum_probs=43.9

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      +....|.||.|-|..+   .++| |+|.||.-||..+|..+..||.|+..+.+.
T Consensus        21 D~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence            4567899999999887   6677 999999999999999999999999877544

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.82  E-value=4.8e-06  Score=82.20  Aligned_cols=95  Identities=22%  Similarity=0.526  Sum_probs=65.0

Q ss_pred             CCCCcccccccCCCCCCHHHHhcCCceeeccccccc----------------hhhhcCCCcccccccccccCceEEEcCC
Q 015232          115 FNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTT----------------SKALREARDCAVCLLEFEENDYVRTLPG  178 (411)
Q Consensus       115 ~~~~~~~~~~~~~~gls~~~i~~Lp~~~~~~~~~~~----------------~~~~~~~~~C~ICle~f~~~~~~~~Lp~  178 (411)
                      |......+....++||++..+..|....-...+...                .+..-....|+|||.-|.+++...+++ 
T Consensus        57 YP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~-  135 (368)
T KOG4445|consen   57 YPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVTA-  135 (368)
T ss_pred             CCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCceeeeh-
Confidence            333334556677999999888776554433222110                011123568999999999999888888 


Q ss_pred             CCceechhHHHHHHhc-----------------------CCCCCccCcCccCCCC
Q 015232          179 CSHSFHVDCIDIWLRS-----------------------HANCPLCRAGIFLTES  210 (411)
Q Consensus       179 C~H~FH~~CI~~Wl~~-----------------------~~tCPlCR~~i~~~~~  210 (411)
                      |.|.||..|+..+|..                       +..||+||..|...+.
T Consensus       136 C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  136 CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            9999999999887631                       2249999998865543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=7.6e-06  Score=83.22  Aligned_cols=45  Identities=24%  Similarity=0.873  Sum_probs=34.6

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHHhc---CCCCCccC
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS---HANCPLCR  202 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR  202 (411)
                      ..|.||.+-+...+.+.-+..|||+||..|+..|+..   +.+||+|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            4799995555444455555559999999999999963   34799998

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.79  E-value=8.2e-06  Score=84.27  Aligned_cols=50  Identities=36%  Similarity=0.824  Sum_probs=39.2

Q ss_pred             hcCCCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          154 LREARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       154 ~~~~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ..+...|+||||.+...- .++... |.|.||..|+..|  ...+||+||....
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence            356789999999997754 334444 9999999999999  4568999997554

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.77  E-value=6.6e-06  Score=90.89  Aligned_cols=52  Identities=31%  Similarity=0.805  Sum_probs=39.0

Q ss_pred             cCCCcccccccccccCc---eEEEcCCCCceechhHHHHHHh--cCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEND---YVRTLPGCSHSFHVDCIDIWLR--SHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~---~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~i~  206 (411)
                      ...++|+||...+..-+   .-...+.|.|-||..|+.+|+.  .+.+||+||..+.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            45689999998876211   1223345999999999999996  4557999998764

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.75  E-value=1.3e-05  Score=79.02  Aligned_cols=48  Identities=25%  Similarity=0.556  Sum_probs=41.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +.-..|-||-+.|..+   ..++ |||-||.-||...|..+..||+||.+..
T Consensus        23 Ds~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          23 DSMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             hhHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence            4567899999998876   4555 9999999999999999999999998654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.72  E-value=6.8e-06  Score=65.24  Aligned_cols=50  Identities=26%  Similarity=0.719  Sum_probs=23.3

Q ss_pred             CCcccccccccc-cCce-EEEcC--CCCceechhHHHHHHhc----C-------CCCCccCcCcc
Q 015232          157 ARDCAVCLLEFE-ENDY-VRTLP--GCSHSFHVDCIDIWLRS----H-------ANCPLCRAGIF  206 (411)
Q Consensus       157 ~~~C~ICle~f~-~~~~-~~~Lp--~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~i~  206 (411)
                      +.+|.||++.+. .++. ..+-+  .|++.||..||.+||..    +       .+||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            457999999876 3322 23332  69999999999999852    1       13999999874

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=2.6e-05  Score=78.76  Aligned_cols=49  Identities=31%  Similarity=0.713  Sum_probs=40.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      +...+|.|||.+-++   ..+|| |.|. .|..|.+...-+++.||+||.+|..
T Consensus       288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            457899999998766   48899 9997 6788988877788889999998843

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=4.8e-05  Score=77.42  Aligned_cols=52  Identities=31%  Similarity=0.855  Sum_probs=40.2

Q ss_pred             cCCCcccccccccccCc----eEEEcCCCCceechhHHHHHH--hc-----CCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEND----YVRTLPGCSHSFHVDCIDIWL--RS-----HANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~----~~~~Lp~C~H~FH~~CI~~Wl--~~-----~~tCPlCR~~i~  206 (411)
                      ..+.+|.||+|..-+..    ...+||+|.|.||..||..|-  .+     ...||.||...-
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            35789999999976542    134567799999999999997  33     456999998653

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.38  E-value=4.1e-05  Score=59.78  Aligned_cols=50  Identities=28%  Similarity=0.739  Sum_probs=25.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE  209 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~  209 (411)
                      +....|.+|.+.++.+   +.+..|.|+||..||..-+.  ..||+|+.+.-..|
T Consensus         5 e~lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    5 EELLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD   54 (65)
T ss_dssp             HHTTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred             HHhcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence            4567899999998876   44556999999999988554  34999988764443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00012  Score=75.10  Aligned_cols=49  Identities=29%  Similarity=0.733  Sum_probs=37.4

Q ss_pred             CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhc--CCCCCccCcC
Q 015232          156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRS--HANCPLCRAG  204 (411)
Q Consensus       156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~  204 (411)
                      ....|+|||+.+... +...+.+.|||.|...||+.||..  ...||.|...
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            467899999999753 444444459999999999999952  2349999764

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=9.6e-05  Score=73.27  Aligned_cols=49  Identities=27%  Similarity=0.479  Sum_probs=38.6

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~  208 (411)
                      ...+|+||+....-+   ..|+ |+|.||..||+--. ....+|++||.+|...
T Consensus         6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            356899999875544   6676 99999999998554 4556799999998654

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=4.8e-05  Score=76.77  Aligned_cols=50  Identities=30%  Similarity=0.595  Sum_probs=41.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~  207 (411)
                      ..+..|.|||+-++..   ...+.|.|-||..||..-+ ..++.||.||..+..
T Consensus        41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS   91 (381)
T ss_pred             hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence            4678999999998765   4555699999999999877 567789999987754

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=8.9e-05  Score=56.13  Aligned_cols=46  Identities=26%  Similarity=0.578  Sum_probs=32.9

Q ss_pred             CCcccccccccccCceEEEcCCCCce-echhHHH-HHHhcCCCCCccCcCcc
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCID-IWLRSHANCPLCRAGIF  206 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~-~Wl~~~~tCPlCR~~i~  206 (411)
                      +++|.||+|.-.+.   ++.. |||+ .|.+|-. .|-..+..||+||++|.
T Consensus         7 ~dECTICye~pvds---VlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDS---VLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchH---HHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            47899999874443   3333 9997 4666754 45457888999999874

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.17  E-value=0.00018  Score=73.61  Aligned_cols=48  Identities=33%  Similarity=0.779  Sum_probs=38.7

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHHhc--CCCCCccCcCccCCC
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--HANCPLCRAGIFLTE  209 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~i~~~~  209 (411)
                      .-|-||-|.   +..+++-| |||..|..|+..|-..  .++||.||..|--.+
T Consensus       370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            579999876   33477888 9999999999999743  568999999885443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00016  Score=79.15  Aligned_cols=51  Identities=24%  Similarity=0.651  Sum_probs=40.3

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCCCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLTES  210 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~~~  210 (411)
                      .-..|++|-..+++.    ++++|+|+||..|+..-+ .++..||.|-+.+-..|.
T Consensus       642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            456899999877663    444599999999999988 567789999888765543

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0016  Score=62.42  Aligned_cols=58  Identities=26%  Similarity=0.576  Sum_probs=46.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc--------CCCCCccCcCccCCCCCCch
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--------HANCPLCRAGIFLTESPFVP  214 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~i~~~~~~~~~  214 (411)
                      +....|..|--.+..+|.++..  |-|+||.+|+++|-.+        ...||.|-.+|+......-|
T Consensus        48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsP  113 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSP  113 (299)
T ss_pred             CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccch
Confidence            4667899999999999988876  9999999999999642        23599999999876544433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0011  Score=68.82  Aligned_cols=49  Identities=35%  Similarity=0.795  Sum_probs=42.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      ..+.+|.||+.-+..+   +++| |||.||..||+.-+.....||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            5678999999888776   6777 99999999999988877889999998864

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.49  E-value=0.0024  Score=48.85  Aligned_cols=43  Identities=26%  Similarity=0.661  Sum_probs=28.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc--CCCCCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--HANCPL  200 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPl  200 (411)
                      .....|+|.+..|+++  ++-.. |||+|-...|..|+..  ...||+
T Consensus         9 ~~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence            3567899999999876  45444 9999999999999943  335998

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.44  E-value=0.0011  Score=58.98  Aligned_cols=40  Identities=25%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             CCCcccccccccccCceEEEcCCCC------ceechhHHHHHHhcCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCS------HSFHVDCIDIWLRSHA  196 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~------H~FH~~CI~~Wl~~~~  196 (411)
                      ...+|.||++.+.+.+-++.++ ||      |+||.+|+++|-..++
T Consensus        25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~   70 (134)
T PF05883_consen   25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERN   70 (134)
T ss_pred             cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhcc
Confidence            3678999999998855566666 66      9999999999954333

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.44  E-value=0.0019  Score=74.49  Aligned_cols=52  Identities=29%  Similarity=0.620  Sum_probs=40.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC----------CCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----------ANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----------~tCPlCR~~i~~  207 (411)
                      +.++.|.||..+--.....+.|. |+|+||..|...-|++.          ..||+|+.+|.+
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            56889999987765566778887 99999999987655432          259999998854

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.40  E-value=0.0017  Score=67.48  Aligned_cols=54  Identities=28%  Similarity=0.613  Sum_probs=44.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP  211 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~~  211 (411)
                      +++..|+||...+.++-.  ... |||.||..|+..|+..+..||.|+..+...+..
T Consensus        19 ~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccchhhcc
Confidence            567889999999988722  134 999999999999999999999998877655443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.026  Score=56.97  Aligned_cols=48  Identities=19%  Similarity=0.401  Sum_probs=37.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      .....|+||+..-.++..+.+   -|-+||..||-+.+..+..||+=..++
T Consensus       298 ~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            456789999998766532222   699999999999999999999865443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.04  E-value=0.0023  Score=65.66  Aligned_cols=47  Identities=32%  Similarity=0.785  Sum_probs=38.4

Q ss_pred             CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhcCC--CCCccCc
Q 015232          156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLCRA  203 (411)
Q Consensus       156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~  203 (411)
                      -+.-|..|=|.+-.. +.+.-|| |.|+||..|+...|.++.  +||.||.
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            356799999888654 4677898 999999999999996554  6999983

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.004  Score=63.32  Aligned_cols=45  Identities=31%  Similarity=0.592  Sum_probs=34.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ...+.|.||+++.++   ...+| |||+=|  |...-.... +||+||..|.
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~l~-~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKHLP-QCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccc---eeeec-CCcEEE--chHHHhhCC-CCchhHHHHH
Confidence            456789999999766   57788 999955  888764433 3999998773

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.85  E-value=0.0039  Score=66.12  Aligned_cols=53  Identities=23%  Similarity=0.619  Sum_probs=39.6

Q ss_pred             hhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-----cCCCCCccCcCccCC
Q 015232          152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----SHANCPLCRAGIFLT  208 (411)
Q Consensus       152 ~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~i~~~  208 (411)
                      ++..+..+|.+|-+.-++.   ++.. |.|.||..||.++..     .+.+||+|...+..+
T Consensus       531 ~enk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  531 DENKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             ccccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            3346778999999885553   4554 999999999988863     345799998766443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.0079  Score=59.30  Aligned_cols=50  Identities=22%  Similarity=0.367  Sum_probs=37.7

Q ss_pred             hcCCCcccccccccccCceEEEcCCCCceechhHHHHHHh--cCCCCCccCcCcc
Q 015232          154 LREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR--SHANCPLCRAGIF  206 (411)
Q Consensus       154 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~i~  206 (411)
                      ...+.+|++|-+.-..+  -.+.+ |+|+||.-||..-..  ..-+||.|-.++.
T Consensus       236 ~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            35788999999875444  34454 999999999997654  3467999977653

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.71  E-value=0.0039  Score=58.84  Aligned_cols=46  Identities=22%  Similarity=0.465  Sum_probs=38.7

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      -...|.||.++|+.+   ++.. |||.||..|...=++....|-+|....
T Consensus       195 IPF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         195 IPFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             Cceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence            345899999999887   5555 999999999998888888899997654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.017  Score=56.31  Aligned_cols=55  Identities=13%  Similarity=0.184  Sum_probs=48.3

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTES  210 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~  210 (411)
                      ....|+||.+.+.+...+.+|..|||+|+.+|.++.+.....||+|-.++-+.+.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi  274 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI  274 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence            4578999999999988888888899999999999999999999999887755544

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.0091  Score=60.70  Aligned_cols=49  Identities=24%  Similarity=0.494  Sum_probs=40.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .+++.|+||...   +-..+..| |+|.=|+.||.+-|.+.+.|=.|++.+..
T Consensus       420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            467889999765   33346677 99999999999999999999999998753

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.39  E-value=0.0082  Score=49.97  Aligned_cols=33  Identities=30%  Similarity=0.736  Sum_probs=27.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHH
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCID  189 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~  189 (411)
                      .+...|++|-..+.. ....+.| |||+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            456789999999977 5667777 99999999985

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.37  E-value=0.0041  Score=62.57  Aligned_cols=48  Identities=27%  Similarity=0.576  Sum_probs=40.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      .....|.+|-.-|.+.   .+...|-|.||..||...|.....||+|...|
T Consensus        13 n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i   60 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVI   60 (331)
T ss_pred             ccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence            4567899999888775   23335999999999999999999999997765

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.0099  Score=61.49  Aligned_cols=49  Identities=29%  Similarity=0.670  Sum_probs=39.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--------CCCCccCcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--------ANCPLCRAG  204 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--------~tCPlCR~~  204 (411)
                      ....+|.||+++..-.+..+.+| |+|+||..|+..++..+        -.||-|+..
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            46788999999987768888898 99999999999997422        248877653

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.12  E-value=0.01  Score=66.00  Aligned_cols=50  Identities=30%  Similarity=0.765  Sum_probs=38.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-------CCCCccCcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-------ANCPLCRAG  204 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-------~tCPlCR~~  204 (411)
                      ....+|.||.+.+.....+---..|-|+||..||..|-...       -.||.|...
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            46689999999998766554444588999999999997431       139999843

>PHA03096 p28-like protein; Provisional

Probab=95.12  E-value=0.0098  Score=59.36  Aligned_cols=46  Identities=28%  Similarity=0.658  Sum_probs=34.0

Q ss_pred             CcccccccccccCc----eEEEcCCCCceechhHHHHHHhc---CCCCCccCc
Q 015232          158 RDCAVCLLEFEEND----YVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRA  203 (411)
Q Consensus       158 ~~C~ICle~f~~~~----~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~  203 (411)
                      ..|.||+|......    .-.+|+.|.|.||..||..|...   ..+||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            78999999886532    34467789999999999999742   234555543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.08  E-value=0.018  Score=42.24  Aligned_cols=40  Identities=33%  Similarity=0.941  Sum_probs=27.0

Q ss_pred             ccccccccccCceEEEcCCCC-----ceechhHHHHHHh--cCCCCCcc
Q 015232          160 CAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLR--SHANCPLC  201 (411)
Q Consensus       160 C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~--~~~tCPlC  201 (411)
                      |-||++.-.+.+ ..+.| |+     ...|..|++.|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            779999877665 33455 54     4789999999995  45669987

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.01  E-value=0.014  Score=58.22  Aligned_cols=47  Identities=32%  Similarity=0.774  Sum_probs=35.9

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCc-CccC
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRA-GIFL  207 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~-~i~~  207 (411)
                      ..|+.|-.-+...  +++ +.|+|.||..||..-| .....||.|.+ +|..
T Consensus       275 LkCplc~~Llrnp--~kT-~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll  323 (427)
T COG5222         275 LKCPLCHCLLRNP--MKT-PCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL  323 (427)
T ss_pred             ccCcchhhhhhCc--ccC-ccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence            5799998887776  333 5599999999999766 56778999954 4443

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.0097  Score=54.60  Aligned_cols=30  Identities=30%  Similarity=0.802  Sum_probs=27.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceech
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHV  185 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~  185 (411)
                      ++..+|.||||+++.++.+..|| |-.+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            45578999999999999999999 9999996

>PHA02862 5L protein; Provisional

Probab=94.75  E-value=0.02  Score=51.60  Aligned_cols=46  Identities=22%  Similarity=0.687  Sum_probs=34.1

Q ss_pred             CCcccccccccccCceEEEcCCCC-----ceechhHHHHHHh--cCCCCCccCcCccC
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLR--SHANCPLCRAGIFL  207 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~--~~~tCPlCR~~i~~  207 (411)
                      .+.|=||+++-++.    .-| |.     ..-|..|+.+|+.  ++..|++|+.+...
T Consensus         2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            35799999985332    234 54     6889999999995  44569999988654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.51  E-value=0.041  Score=56.00  Aligned_cols=46  Identities=28%  Similarity=0.629  Sum_probs=37.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHH--HhcCCCCCccCcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW--LRSHANCPLCRAG  204 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W--l~~~~tCPlCR~~  204 (411)
                      ++...|.||-+.+.-   ..++| |+|..|..|.-..  |..++.||+||+.
T Consensus        59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence            567889999887644   57888 9999999998643  6778889999975

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.017  Score=57.46  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=38.8

Q ss_pred             CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      ...|-||...|..+   ++.. |+|.||..|...=++....|.+|-..+
T Consensus       241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccc
Confidence            46799999999887   5554 999999999998888888999997765

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.76  E-value=0.065  Score=52.64  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE  209 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~  209 (411)
                      .....|+|+..+|......+.+..|||+|...||+.-- ....||+|-.++...|
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED  164 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence            56789999999996666555555599999999999873 3557999988765443

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.67  E-value=0.046  Score=50.07  Aligned_cols=49  Identities=20%  Similarity=0.626  Sum_probs=34.6

Q ss_pred             cCCCcccccccccccCceEEEcC-CCCc---eechhHHHHHHhc--CCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLP-GCSH---SFHVDCIDIWLRS--HANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp-~C~H---~FH~~CI~~Wl~~--~~tCPlCR~~i~~  207 (411)
                      ..+..|=||.++-.  +.  .-| .|..   .-|..|++.|+..  ...|++|+.....
T Consensus         6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            46778999998843  22  234 2433   6699999999953  4469999987644

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.18  E-value=0.029  Score=54.42  Aligned_cols=44  Identities=27%  Similarity=0.556  Sum_probs=32.0

Q ss_pred             cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      .|..|.-.- .++...++. |+|+||..|...-..  ..||+||..|-
T Consensus         5 hCn~C~~~~-~~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFP-SQDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIR   48 (233)
T ss_pred             EeccccccC-CCCceeeee-chhhhhhhhcccCCc--cccccccceee
Confidence            477776543 366777776 999999999876322  28999998863

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.89  E-value=0.047  Score=54.25  Aligned_cols=49  Identities=20%  Similarity=0.449  Sum_probs=40.0

Q ss_pred             CCCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          156 EARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ....|+||.+.+-... .+..++ |||..|..|++.....+-+||+|.. +.
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~  206 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PG  206 (276)
T ss_pred             ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hH
Confidence            3445999999987765 456676 9999999999999877799999988 53

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.68  E-value=0.069  Score=40.68  Aligned_cols=47  Identities=21%  Similarity=0.503  Sum_probs=33.9

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ....|..|...   +.+-.+++ |||+.+..|.+-+  +-+.||+|.+++...
T Consensus         6 ~~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    6 PEQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             cceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence            34567777655   33447788 9999999987764  556799999887543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.32  E-value=0.011  Score=60.72  Aligned_cols=51  Identities=22%  Similarity=0.559  Sum_probs=44.0

Q ss_pred             CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      ....|+||.+.++.. +++..+- |||.+|.+||.+||.....||.|++.+..
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            356799999999886 6677776 99999999999999888889999998754

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.28  E-value=0.083  Score=38.11  Aligned_cols=41  Identities=24%  Similarity=0.703  Sum_probs=23.6

Q ss_pred             ccccccccccCceEEEcCCCCceechhHHHHHHhcCC--CCCcc
Q 015232          160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLC  201 (411)
Q Consensus       160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlC  201 (411)
                      |.+|.+....+...... .|+=.+|..|++.++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67888887777444333 3888999999999986555  69988

; PDB: 3NW0_A 2CT0_A.

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=92.26  E-value=0.091  Score=39.01  Aligned_cols=44  Identities=27%  Similarity=0.552  Sum_probs=20.8

Q ss_pred             ccccccccccCc-eEEEcCCCCceechhHHHHHHh-cCCCCCccCcC
Q 015232          160 CAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAG  204 (411)
Q Consensus       160 C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~  204 (411)
                      |++|.+++...+ ...-- .||+..+..|...-+. ....||-||.+
T Consensus         1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            789999994443 33333 4888888888777665 46679999975

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=92.15  E-value=0.041  Score=63.80  Aligned_cols=48  Identities=23%  Similarity=0.628  Sum_probs=39.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      .....|.||++.++...  .+.. |||.+|..|+..|+..+..||+|+...
T Consensus      1151 ~~~~~c~ic~dil~~~~--~I~~-cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQG--GIAG-CGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             hcccchHHHHHHHHhcC--Ceee-echhHhhhHHHHHHHHhccCcchhhhh
Confidence            34568999999998532  2333 999999999999999999999998544

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.11  E-value=0.077  Score=53.90  Aligned_cols=66  Identities=17%  Similarity=0.307  Sum_probs=42.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCCCCCCchhhhhhc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLTESPFVPIMAARI  220 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~~~~~~~~~~~~~  220 (411)
                      ++++.|+.|+|.+...++-..-..||...|.-|-..-- .-+..||-||+...+.....+++..+++
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ee~   78 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSPEEL   78 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEecCHHHH
Confidence            45667999999998877544443489766655533321 2344699999987666655555544443

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.69  E-value=0.075  Score=53.42  Aligned_cols=44  Identities=32%  Similarity=0.744  Sum_probs=30.7

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      --|.-|=-.+  .-.-+.+| |+|+||.+|...  ...+.||.|-..|.
T Consensus        91 HfCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   91 HFCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             EeecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence            4566663332  22457888 999999999875  44678999976654

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=0.14  Score=50.59  Aligned_cols=48  Identities=27%  Similarity=0.715  Sum_probs=38.6

Q ss_pred             CCcccccccccccCc---eEEEcCCCCceechhHHHHHHhcC-CCCCccCcCc
Q 015232          157 ARDCAVCLLEFEEND---YVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGI  205 (411)
Q Consensus       157 ~~~C~ICle~f~~~~---~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i  205 (411)
                      ...|-||-++|...+   ..++|. |||.++..|+..-+... ..||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            357999999998763   456776 99999999999877544 3599999985

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.45  E-value=0.07  Score=59.23  Aligned_cols=46  Identities=30%  Similarity=0.641  Sum_probs=35.1

Q ss_pred             CcccccccccccCceEEEcCCCCceechhHHHHHHhc--CCCCCccCcCccCC
Q 015232          158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--HANCPLCRAGIFLT  208 (411)
Q Consensus       158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~i~~~  208 (411)
                      ..|.||++    .+...+.. |+|.||..|+..-+..  ...||+||..+...
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            78999999    34455665 9999999999887643  23599999877543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.95  E-value=0.13  Score=48.14  Aligned_cols=51  Identities=27%  Similarity=0.692  Sum_probs=32.8

Q ss_pred             CCcccccccccccCc----eEEEcCCCCceechhHHHHHHhcC-----------CCCCccCcCccCC
Q 015232          157 ARDCAVCLLEFEEND----YVRTLPGCSHSFHVDCIDIWLRSH-----------ANCPLCRAGIFLT  208 (411)
Q Consensus       157 ~~~C~ICle~f~~~~----~~~~Lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~i~~~  208 (411)
                      ...|.||..---++.    .+--. .||.-||.-|+..||..-           ..||.|-.+|..+
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             hhcccceeeeecCCcccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            345667754333321    11222 499999999999998531           1499998887543

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.32  E-value=0.054  Score=54.03  Aligned_cols=42  Identities=31%  Similarity=0.627  Sum_probs=29.9

Q ss_pred             CCcccccccccccCceEEEcCCCCcee-chhHHHHHHhcCCCCCccCcCcc
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHSF-HVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~F-H~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ..-|.||++.-.   ....|+ |||.. |..|-...    +.||+||+-|.
T Consensus       300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence            678999988744   468888 99974 44454332    37999998763

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=90.29  E-value=2.5  Score=39.15  Aligned_cols=9  Identities=22%  Similarity=0.519  Sum_probs=4.2

Q ss_pred             hcccCCCCC
Q 015232           93 RRYYLPSSN  101 (411)
Q Consensus        93 rr~~~~~s~  101 (411)
                      |++......
T Consensus       127 RkYgvl~~~  135 (163)
T PF06679_consen  127 RKYGVLTTR  135 (163)
T ss_pred             eeecccCCC
Confidence            455544433

Their function is unknown.

>PF15102 TMEM154: TMEM154 protein family

Probab=89.98  E-value=0.22  Score=45.12  Aligned_cols=15  Identities=27%  Similarity=0.191  Sum_probs=7.0

Q ss_pred             CCCCCcccccccccC
Q 015232            9 PPISPTTVYDITSSS   23 (411)
Q Consensus         9 ~~~~~~t~~~~~~~~   23 (411)
                      .+.-.||.++..++.
T Consensus        17 ~~~~ttt~s~~asvT   31 (146)
T PF15102_consen   17 LPEETTTPSTFASVT   31 (146)
T ss_pred             cCCcccccccccccc
Confidence            334444455555544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.69  E-value=0.15  Score=57.02  Aligned_cols=42  Identities=24%  Similarity=0.710  Sum_probs=32.3

Q ss_pred             CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcC
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG  204 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~  204 (411)
                      ...|..|--.++-+  .+..- |||.||.+|++   .....||-|+..
T Consensus       840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchh
Confidence            35899998887665  33333 99999999999   455679999873

>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins

Probab=89.59  E-value=1.6  Score=41.93  Aligned_cols=60  Identities=25%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCC
Q 015232           47 PPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPS  113 (411)
Q Consensus        47 ~~lI~iI~Ila~~Flvv~~~~lI~r~~~~~~~~i~rr~rr~R~rrrrr~~~~~s~~d~l~s~~~~~~  113 (411)
                      ..+++-++|+++.|++.++++|-...+.+.+..+.|...--       ..++-+|+|.+.+..-||.
T Consensus       128 ~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ~g-------KRqpRSNGDFLASSgLWPa  187 (227)
T PF05399_consen  128 MAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQVG-------KRQPRSNGDFLASSGLWPA  187 (227)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccCCCcccceeeccccCcc
Confidence            34445555555566665555554444433333433322210       1124478887766665543

The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=89.32  E-value=0.44  Score=49.21  Aligned_cols=55  Identities=24%  Similarity=0.623  Sum_probs=36.0

Q ss_pred             cCCCcccccccccccCceEEEc--------------C-----CCCceechhHHHHHHhc-------------CCCCCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTL--------------P-----GCSHSFHVDCIDIWLRS-------------HANCPLCR  202 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~L--------------p-----~C~H~FH~~CI~~Wl~~-------------~~tCPlCR  202 (411)
                      ++.+.|.-|+..-.+- ++...              +     .|.-++|.+|+.+|+..             +..||+||
T Consensus       269 ~e~e~CigC~~~~~~v-kl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR  347 (358)
T PF10272_consen  269 QELEPCIGCMQAQPNV-KLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR  347 (358)
T ss_pred             cccCCccccccCCCCc-EEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence            5678899998864221 21111              0     14466789999999843             23599999


Q ss_pred             cCccCCCC
Q 015232          203 AGIFLTES  210 (411)
Q Consensus       203 ~~i~~~~~  210 (411)
                      +.+...|.
T Consensus       348 a~FCilDV  355 (358)
T PF10272_consen  348 AKFCILDV  355 (358)
T ss_pred             ccceeeee
Confidence            98776554

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.73  E-value=0.24  Score=54.98  Aligned_cols=23  Identities=35%  Similarity=0.882  Sum_probs=21.0

Q ss_pred             CCCceechhHHHHHHhcCCCCCc
Q 015232          178 GCSHSFHVDCIDIWLRSHANCPL  200 (411)
Q Consensus       178 ~C~H~FH~~CI~~Wl~~~~tCPl  200 (411)
                      .|+|+.|..|..+|+.....||.
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            39999999999999999889984

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=88.68  E-value=0.54  Score=41.49  Aligned_cols=18  Identities=22%  Similarity=0.349  Sum_probs=7.7

Q ss_pred             CCCCCCCCCChHHHHHHH
Q 015232           37 NNTKPPVDFSPPLIAMVV   54 (411)
Q Consensus        37 ~~~~~~~~fs~~lI~iI~   54 (411)
                      ...+..-+|+-+.|+.|+
T Consensus        53 ~~~ql~h~fs~~~i~~Ii   70 (122)
T PF01102_consen   53 ERSQLVHRFSEPAIIGII   70 (122)
T ss_dssp             ---SSSSSSS-TCHHHHH
T ss_pred             CCcccccCccccceeehh
Confidence            333444577777654443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.12  E-value=0.16  Score=55.37  Aligned_cols=45  Identities=22%  Similarity=0.492  Sum_probs=32.4

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCc
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA  203 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~  203 (411)
                      +...|.||+..|-....+-+...|||..|..|++.-  -+.+|| |+.
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~   54 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR   54 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence            345799998888765433333359999999999875  445788 654

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.44  E-value=0.38  Score=53.82  Aligned_cols=55  Identities=22%  Similarity=0.559  Sum_probs=39.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCC---ceechhHHHHHHhc--CCCCCccCcCccCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCS---HSFHVDCIDIWLRS--HANCPLCRAGIFLTE  209 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~---H~FH~~CI~~Wl~~--~~tCPlCR~~i~~~~  209 (411)
                      ++...|-||..+=..++.+..-.+|.   ...|.+|+.+|+..  ...|-+|+.++..++
T Consensus        10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            35578999998866666555443354   57899999999964  445999998765443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=85.97  E-value=0.69  Score=42.52  Aligned_cols=33  Identities=24%  Similarity=0.597  Sum_probs=21.1

Q ss_pred             CCcccccccccccCceEEEcC------C-----CCc-eechhHHHHHH
Q 015232          157 ARDCAVCLLEFEENDYVRTLP------G-----CSH-SFHVDCIDIWL  192 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp------~-----C~H-~FH~~CI~~Wl  192 (411)
                      +..|+||||--.+.   +.|-      +     |+- .=|..|++++-
T Consensus         2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk   46 (162)
T PF07800_consen    2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK   46 (162)
T ss_pred             CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence            56899999975443   3332      1     332 34778999885

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=85.89  E-value=0.41  Score=47.13  Aligned_cols=50  Identities=26%  Similarity=0.648  Sum_probs=36.5

Q ss_pred             CCcccccccccccCce-EEEcCCCC-----ceechhHHHHHHh--cCCCCCccCcCccC
Q 015232          157 ARDCAVCLLEFEENDY-VRTLPGCS-----HSFHVDCIDIWLR--SHANCPLCRAGIFL  207 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~-~~~Lp~C~-----H~FH~~CI~~Wl~--~~~tCPlCR~~i~~  207 (411)
                      +..|-||.++...... ..+.| |.     +..|..|++.|+.  ....|.+|......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            5789999998755431 33444 54     7779999999996  56679999886543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=85.84  E-value=0.8  Score=34.87  Aligned_cols=35  Identities=31%  Similarity=0.752  Sum_probs=30.7

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHH
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI  190 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~  190 (411)
                      ....|.+|-+.|++++.+++-|.||-.+|..|-+.
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            45679999999999999999999999999998644

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.42  E-value=0.47  Score=53.58  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=28.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHH
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL  192 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl  192 (411)
                      +.++.|.+|.-.+-.. .-.+.+ |||.||.+||..-.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            4678999998887654 445666 99999999998763

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.30  E-value=0.81  Score=45.76  Aligned_cols=48  Identities=23%  Similarity=0.497  Sum_probs=33.8

Q ss_pred             ccccccccc-ccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCcc
Q 015232          159 DCAVCLLEF-EENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIF  206 (411)
Q Consensus       159 ~C~ICle~f-~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~  206 (411)
                      .|++|..+. -.++.......|+|-.|..|++.-+ .....||.|-..+-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            589997653 3444333333499999999999887 56667999976543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.75  E-value=0.64  Score=50.37  Aligned_cols=49  Identities=33%  Similarity=0.726  Sum_probs=40.4

Q ss_pred             hhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232          153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE  209 (411)
Q Consensus       153 ~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~  209 (411)
                      ..+..+.|.||+++.    ..++.+ |.   |..|+.+|+..+..||+|+..+..++
T Consensus       475 l~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~  523 (543)
T KOG0802|consen  475 LREPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD  523 (543)
T ss_pred             hhcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence            345678999999998    346666 88   99999999999999999998876544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.76  E-value=1.2  Score=49.79  Aligned_cols=42  Identities=21%  Similarity=0.408  Sum_probs=32.6

Q ss_pred             CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCc
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPL  200 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPl  200 (411)
                      ...|.+|-..+..  .....+.|||.-|..|+.+|+..+.-||.
T Consensus       779 ~~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~  820 (839)
T KOG0269|consen  779 SAKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK  820 (839)
T ss_pred             hcCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence            4579999776543  23445569999999999999998888876

>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins

Probab=81.39  E-value=3.4  Score=40.14  Aligned_cols=15  Identities=33%  Similarity=0.645  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHH
Q 015232           50 IAMVVVVATAFLVVT   64 (411)
Q Consensus        50 I~iI~Ila~~Flvv~   64 (411)
                      |++|+|.+.+|+++.
T Consensus       195 IaliVitl~vf~Lvg  209 (259)
T PF07010_consen  195 IALIVITLSVFTLVG  209 (259)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444433

Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=80.09  E-value=0.8  Score=44.80  Aligned_cols=48  Identities=33%  Similarity=0.664  Sum_probs=35.5

Q ss_pred             cCCCccccccccc-ccCc-eEEEcCCCCceechhHHHHHH-hcCCCCC--ccC
Q 015232          155 REARDCAVCLLEF-EEND-YVRTLPGCSHSFHVDCIDIWL-RSHANCP--LCR  202 (411)
Q Consensus       155 ~~~~~C~ICle~f-~~~~-~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCP--lCR  202 (411)
                      ..+..|+||..+- -.++ ++-+-|.|-|-.|..|++.-+ .....||  -|-
T Consensus         8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~   60 (314)
T COG5220           8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG   60 (314)
T ss_pred             hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence            3566899998764 3344 444555699999999999987 5667799  774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		4e-13
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		3e-08
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		6e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		1e-04
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-04
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		2e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		4e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
           A+ +  +CAVCL E E+ +  R LP C H FH +C+D+WL SH+ CPLCR
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 138 IPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN 197
           +P   F   N  + + L     C VC+ +FE    +R LP C+H FH  C+D WL+++  
Sbjct: 9   LPSYRFNPNNHQSEQTL-----CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRT 62
Query: 198 CPLCRA 203
           CP+CRA
Sbjct: 63  CPICRA 68

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
           C +CL   EE + VR LP C H FH  C+D WL ++  CP+CR  I
Sbjct: 17  CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
           +C VC  ++   + VR LP C+H FH  CI  WL  H +CP+CR  +
Sbjct: 17  ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
           C +C  E+ + D    LP C H FH  C+ IWL+    CP+CR
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201
           CAVCL +F+  D +   P C H+FH  C+  WL     CPLC
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
           C  C  E ++ D V     C+HSFH  C+ +W++ +  CPLC+
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
           K L +  +C +C+    +      LP C+HSF   CID W   H NCP+CR
Sbjct: 10  KQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	7e-30
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-27
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-24
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-23
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-22
2ect_A	78	Ring finger protein 126; metal binding protein, st	9e-22
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-19
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	5e-18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	9e-16
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	6e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	9e-12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	7e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	7e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	5e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	3e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	7e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	3e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	7e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	8e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	3e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-04
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	5e-04

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  108 bits (273), Expect = 7e-30
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207
           A+ +  +CAVCL E E+ +  R LP C H FH +C+D+WL SH+ CPLCR  + +
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  103 bits (258), Expect = 2e-27
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 133 SVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL 192
                +P   F   N  +     E   C VC+ +FE    +R LP C+H FH  C+D WL
Sbjct: 4   GSSGQLPSYRFNPNNHQS-----EQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWL 57

Query: 193 RSHANCPLCRAGI 205
           +++  CP+CRA  
Sbjct: 58  KANRTCPICRADS 70

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 94.7 bits (236), Expect = 2e-24
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
               C +CL   EE + VR LP C H FH  C+D WL ++  CP+CR  I
Sbjct: 13  TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 92.0 bits (229), Expect = 3e-23
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 125 YSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFH 184
            +        I  +P  L T  +        +   C +C  E+ + D    LP C H FH
Sbjct: 12  VANPPASKESIDALPEILVTEDHGAVG----QEMCCPICCSEYVKGDVATELP-CHHYFH 66

Query: 185 VDCIDIWLRSHANCPLCRA 203
             C+ IWL+    CP+CR 
Sbjct: 67  KPCVSIWLQKSGTCPVCRC 85

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 148 KTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206
               K L     CAVCL +F+  D +   P C H+FH  C+  WL     CPLC   + 
Sbjct: 6   SGKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 87.5 bits (217), Expect = 9e-22
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 150 TSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
           T + +    +C VC  ++   + VR LP C+H FH  CI  WL  H +CP+CR  +
Sbjct: 8   TEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 81.9 bits (202), Expect = 1e-19
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
           C  C  E ++ D V     C+HSFH  C+ +W++ +  CPLC+ 
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 79.6 bits (197), Expect = 4e-19
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206
            C +CL +   +  V  +  C H  H  C +  L+    CPLC     
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 76.7 bits (189), Expect = 5e-18
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
           K L +  +C +C+    +      LP C+HSF   CID W   H NCP+CR  +
Sbjct: 10  KQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
            A  C +CL +         LP C H+F   CI  W+R +  CPLC+  +
Sbjct: 4   VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 62.2 bits (150), Expect = 3e-12
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
            +C          +       C+H+FH  CI  WL++   CPL  
Sbjct: 52  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 144 TAKNKTTSKALREARDCAVCLLEFEE----NDYVRTLPGCSHSFHVDCIDIWLRSHANCP 199
           ++ +  T         C +C+  + E       + +   C H F   C+   L++   CP
Sbjct: 2   SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCP 60

Query: 200 LCRAGI 205
            CR  I
Sbjct: 61  TCRKKI 66

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 144 TAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCR 202
           +  ++ + +++ E   C +C+ +  +    R  P CS      CI  WL    A CP CR
Sbjct: 9   SHMDEQSVESIAEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCR 65

Query: 203 AGIFLTESPFVP 214
           A +       V 
Sbjct: 66  APL--QLRELVN 75

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 61.4 bits (148), Expect = 6e-12
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
            +C          +       C+H+FH  CI  WL++   CPL  
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 59.5 bits (144), Expect = 9e-12
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 149 TTSKALREARDCAVCLLEFEE----NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG 204
           TT         C +C+  + E       + +   C H F   C+   L++   CP CR  
Sbjct: 2   TTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKK 60

Query: 205 IFLTESPFVPI 215
           I      + PI
Sbjct: 61  I--NHKRYHPI 69

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 156 EARDCAVCLLEFEE----NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP 211
               C +C+  + E       + +   C H F   C+   L++   CP CR    +    
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKK--INHKR 58

Query: 212 FVPI 215
           + PI
Sbjct: 59  YHPI 62

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPF 212
                 +CA+CL          +LP C H F   C+         C LCR  I   E   
Sbjct: 11  PSLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEI--PEDFL 64

Query: 213 VP 214
             
Sbjct: 65  DS 66

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208
             L     C++C     +     T+  C H+F   CI         CP C   +  T
Sbjct: 10  SELTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN--CPLCRAGIFLTESPFV 213
             + C +C          ++   C    H+ C+  + +S+A   CP C    +  E P  
Sbjct: 14  AVKICNIC---HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND-YWPHEIPKS 69

Query: 214 P 214
            
Sbjct: 70  G 70

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA---GIF 206
           C +C   F+  + V T   C H F   C     R+   C +C     GIF
Sbjct: 18  CFICRQAFQ--NPVVT--KCRHYFCESCALEHFRATPRCYICDQPTGGIF 63

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 106 DSPPFYPSPFNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLL 165
           +    +P   N   D   +  P   D        + +   + +   +     + C +C  
Sbjct: 288 EGFYLFPDGRNQNPDLTGLCEPTPQDH-------IKVTQEQYELYCEMGSTFQLCKICA- 339

Query: 166 EFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIFLTESPFV 213
             E +  V+  P C H     C+  W  S    CP CR  I  TE   V
Sbjct: 340 --ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 147 NKTTSKALREARD---CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
           ++TT   + E      C +C   F +     T+  C HSF   CI  +L +   CP+C  
Sbjct: 2   HRTTRIKITELNPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDV 58

Query: 204 GI 205
            +
Sbjct: 59  QV 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 148 KTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
              +  L     C +C   F E     TL  C+HSF   CI+ W++    CP+CR  I
Sbjct: 55  SHMNDVLENELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDI 108

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 19/84 (22%)

Query: 139 PLSLFTAKNKTTSKALREARDCAVCLLEFEE--------------NDYVRTLPGCSHSFH 184
                  +  T    +    DC +C+ +                    V  L  CSH+FH
Sbjct: 7   GEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFH 66

Query: 185 VDCIDIWLRS-----HANCPLCRA 203
           + C+     +        CP C+ 
Sbjct: 67  LLCLLAMYCNGNKDGSLQCPSCKT 90

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 15/77 (19%)

Query: 144 TAKNKTTSKALREARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRS----- 194
            +      +   E   C +C     +             C    H  C++ W ++     
Sbjct: 295 WSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK 354

Query: 195 ------HANCPLCRAGI 205
                    CP C+A +
Sbjct: 355 TFLEVSFGQCPFCKAKL 371

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 160 CAVCLLEFEENDYVR---TLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVP 214
           C +C       +Y      +P CSH++   CI  +L     CP C     +TE     
Sbjct: 25  CGICF------EYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCV--TVTEPDLKN 74

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.5 bits (112), Expect = 6e-07
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 156 EARDCAVCLLEFEENDYVRTLP---GCSHSFHVDCIDIWLRSHANCPLCR 202
               C +C+  + E      L     C H F   C+   L++   CP CR
Sbjct: 6   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 17/48 (35%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
               C     E  +N  +     C H F   C+   L++   CP CR 
Sbjct: 74  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 121

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 144 TAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN---CPL 200
           ++ +     ALRE  +C +C+  F E      L  C H+    C++  L S  N   CP 
Sbjct: 2   SSGSSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF 61

Query: 201 CR 202
           C 
Sbjct: 62  CS 63

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 131 DDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI 190
            +        ++   +           + C +C     +     +   C    H+ C+  
Sbjct: 154 KEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAK 210

Query: 191 WLRSHAN--CPLCRA 203
           + +S+A   CP C  
Sbjct: 211 YFQSNAEPRCPHCND 225

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 154 LREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRA 203
           + E   C  C           T   C H+   DC+D   R+    CP CR 
Sbjct: 49  VEETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRY 95

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 19/107 (17%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCI-DIWLRSHANCPLCRAGIFLTESPFVPIMA 217
            C +C+    E     TLP C+H+    C      ++   CP CR               
Sbjct: 17  QCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRR-------RVSSWTR 65

Query: 218 ARIRPSLDDSSLLQHVTVSLESLSEIQMPTTTAASTNGSEITPCVDD 264
              R +         V V L ++ +   P       +G E     DD
Sbjct: 66  YHTRRNS-------LVNVELWTIIQKHYPRECKLRASGQESEEVADD 105

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFLTE 209
           K + +   C  C L        +T   C H F   C+   L S +  C  C+  I   +
Sbjct: 10  KTVEDKYKCEKCHLVLC--SPKQT--ECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN--CPLCRA 203
           C +C     +      +P C +S+  +CI   L       CP C  
Sbjct: 18  CLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 7/44 (15%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
           C  C  E +     + LP C H+    C++    S   CP+C+A
Sbjct: 9   CQQCQAEAKC---PKLLP-CLHTLCSGCLE---ASGMQCPICQA 45

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 148 KTTSKALREARD---CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203
             +  AL        C+ C     E      L GC H F  +C+   + +   CP+C  
Sbjct: 10  AHSRAALDRLEKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIGT--GCPVCYT 63

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIFLTESPFVPIMAA 218
           C +CL+   E   V+T   C H F   CI   +R   + CP+    I L    F    A 
Sbjct: 21  CPICLMALREA--VQT--PCGHRFCKACIIKSIRDAGHKCPVDNE-ILLENQLFPDNFAK 75

Query: 219 RI 220
           R 
Sbjct: 76  RE 77

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 150 TSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCI-DIWLRSHANCPLCRA 203
           +  A  +  +C +C+   E +D       C +     C   I    +  CP CR 
Sbjct: 4   SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLTESPFVPIMAA 218
           C +C       D V T   C H F   CI   L+   + CP CR   F T+         
Sbjct: 26  CQICEHILA--DPVET--SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFL 81

Query: 219 RIRPSL 224
            I  SL
Sbjct: 82  NILNSL 87

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 160 CAVCLLEFEENDYVR---TLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIFLTES 210
           C +CL      D ++   T   C H F  DCI   LRS    CP CR  +    S
Sbjct: 57  CPICL------DMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN--CPLCRA 203
           C +C     +      +P C +S+  +CI   L       CP C  
Sbjct: 16  CLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGI 205
           C  C L      Y R +P C H F  DC  +   +    CP C   +
Sbjct: 4   CDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPV 47

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 148 KTTSKALREARDCAVCLLEFEENDYVR---TLPGCSHSFHVDCIDIWLRSHA-NCPLCRA 203
               K L ++  C  C       + V    T   C H+   DC+    ++   +CP CR 
Sbjct: 69  PNFLKKLEQSFMCVCCQ------ELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRH 121

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 11/62 (17%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN--------CP--LCRAGIFLT 208
            C +CL E+        +  C   F   C+  ++             CP   C     L 
Sbjct: 7   GCKLCLGEYPVEQMTT-IAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65

Query: 209 ES 210
           E+
Sbjct: 66  EN 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.63
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.56
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.48
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.45
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.43
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.37
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.31
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.3
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.3
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.3
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.27
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.27
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.23
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.22
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.21
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.21
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.2
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.2
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.15
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.14
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.14
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.13
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.1
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.03
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.03
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.02
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.01
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.01
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.0
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.0
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.98
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.97
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.97
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.95
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.92
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.88
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.81
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.81
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.81
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.79
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.78
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.77
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.76
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.74
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.73
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.73
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.7
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.68
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.66
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.55
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.54
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.49
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.46
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.41
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.41
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.38
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.38
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.38
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.29
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.2
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.15
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.1
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.72
3nw0_A	238	Non-structural maintenance of chromosomes element	97.64
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	91.96
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.1
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	90.15
1we9_A	64	PHD finger family protein; structural genomics, PH	86.83
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	85.05
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	83.96
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	83.82
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	81.25

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.63  E-value=4.9e-16  Score=126.77  Aligned_cols=77  Identities=29%  Similarity=0.662  Sum_probs=66.9

Q ss_pred             cCCCCCCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcC
Q 015232          125 YSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG  204 (411)
Q Consensus       125 ~~~~gls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~  204 (411)
                      ....|++++.|+.||...+......    ...+..|+||+++|..++.+++++ |||.||..||+.|+..+.+||+||..
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~----~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~   86 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGA----VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM   86 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSS----SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred             cCCCCCCHHHHHhCCCeeecccccc----cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence            4478999999999999888755432    246778999999999999999999 99999999999999999999999998


Q ss_pred             cc
Q 015232          205 IF  206 (411)
Q Consensus       205 i~  206 (411)
                      +.
T Consensus        87 ~~   88 (91)
T 2l0b_A           87 FP   88 (91)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-15  Score=118.90  Aligned_cols=68  Identities=37%  Similarity=0.858  Sum_probs=56.9

Q ss_pred             HHhcCCceeeccccccchhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          134 VIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       134 ~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .++.||...+.....     ..++..|+||+++|..++.++.++ |+|+||..||+.|+..+.+||+||..+..
T Consensus         5 ~i~~lp~~~~~~~~~-----~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A            5 SSGQLPSYRFNPNNH-----QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CCSSCCCEEBCSSSC-----SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             hHhhCCcEEecCccc-----cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            356677777765432     146778999999999999999998 99999999999999999999999998754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.48  E-value=1.9e-14  Score=105.64  Aligned_cols=52  Identities=48%  Similarity=1.177  Sum_probs=47.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +++.+|+||++++.+++.+..++.|||+||..||..|++.+.+||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4677899999999998888888779999999999999999999999998864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=3.9e-14  Score=111.33  Aligned_cols=55  Identities=36%  Similarity=0.884  Sum_probs=49.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTES  210 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~  210 (411)
                      ....+|+||++.|..++.+++++ |+|+||..||..|+..+.+||+||..+...+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            56789999999999988888998 99999999999999999999999999865433

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=6.1e-14  Score=109.14  Aligned_cols=52  Identities=37%  Similarity=0.848  Sum_probs=47.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      ..+..|+||++.|..++.+++++ |+|+||..||..|+..+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            56778999999999998899998 99999999999999988899999998854

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=105.89  Aligned_cols=52  Identities=42%  Similarity=0.970  Sum_probs=47.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .....|+||++.|..++.++.++ |||+||..||..|+..+.+||+||..+..
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            56778999999999888889998 99999999999999998999999998754

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2e-13  Score=109.06  Aligned_cols=52  Identities=33%  Similarity=0.894  Sum_probs=41.8

Q ss_pred             CCCccccccccccc-----------CceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEE-----------NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~-----------~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      +++.|+||++.|.+           ++.+++++.|+|+||..||++||..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45667777777754           45566665699999999999999999999999998753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.31  E-value=9.5e-13  Score=96.36  Aligned_cols=50  Identities=28%  Similarity=0.734  Sum_probs=43.4

Q ss_pred             cCCCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232          155 REARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI  205 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i  205 (411)
                      ..+.+|+||++.+.+++ .+++++ |+|+||..||+.|+..+.+||+||..+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~   53 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPS   53 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred             CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence            35678999999997644 567777 999999999999999889999999876

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.30  E-value=1.4e-12  Score=109.47  Aligned_cols=51  Identities=25%  Similarity=0.567  Sum_probs=41.4

Q ss_pred             CCCcccccccccccCc---------------eEEEcCCCCceechhHHHHHH-----hcCCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEEND---------------YVRTLPGCSHSFHVDCIDIWL-----RSHANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~i~~  207 (411)
                      .+++|+|||+.|..+.               .+++++ |+|+||..||+.|+     ..+.+||+||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4568999999997643               344676 99999999999999     346689999998754

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.1e-12  Score=99.95  Aligned_cols=51  Identities=25%  Similarity=0.647  Sum_probs=44.1

Q ss_pred             cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      .+...|+||++.+.+.    ..+.+++ |||+||..||+.|+..+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            5678899999999864    3456777 9999999999999999999999999874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.30  E-value=1.1e-12  Score=100.73  Aligned_cols=53  Identities=25%  Similarity=0.611  Sum_probs=45.7

Q ss_pred             cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      +++..|+||++.+.+.    +.+++++ |||.||..||+.|+..+.+||+||..+...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            4677899999999774    4567777 999999999999999999999999988654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.27  E-value=1.8e-12  Score=97.24  Aligned_cols=52  Identities=25%  Similarity=0.621  Sum_probs=44.3

Q ss_pred             CCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ++.+|+||++.+.++    +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            456899999999764    4556777 999999999999999999999999987543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.27  E-value=1.7e-12  Score=109.58  Aligned_cols=51  Identities=29%  Similarity=0.578  Sum_probs=43.3

Q ss_pred             cCCCcccccccccccCc---------------eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEND---------------YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      .+++.|+||++.|....               .++.++ |+|.||..||+.||..+.+||+||..+.
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            35788999999998641               356677 9999999999999999999999999853

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1e-11  Score=98.97  Aligned_cols=53  Identities=30%  Similarity=0.738  Sum_probs=45.2

Q ss_pred             cCCCcccccccccccCce-EEEcCCCCceechhHHHHHHhcC---CCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDY-VRTLPGCSHSFHVDCIDIWLRSH---ANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~-~~~Lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.|.+.+. .++++ |||.||..||..|+..+   ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            567889999999988664 67787 99999999999999765   6899999987654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=3e-12  Score=98.47  Aligned_cols=50  Identities=36%  Similarity=0.907  Sum_probs=43.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE  209 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~  209 (411)
                      .+...|+||++.+.+    ++++ |||.||..||..|+..+.+||+||..+...+
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            467789999999876    6777 9999999999999999999999999886543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.1e-11  Score=96.26  Aligned_cols=50  Identities=24%  Similarity=0.484  Sum_probs=42.9

Q ss_pred             cCCCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ++...|+||++.+.+.   +++ + |||.||..||..|+..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           13 TPYILCSICKGYLIDA---TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CGGGSCTTTSSCCSSC---EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCCChHHHCc---CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            4567899999999874   444 6 999999999999999889999999988654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.21  E-value=8.1e-12  Score=95.34  Aligned_cols=49  Identities=35%  Similarity=0.859  Sum_probs=42.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +.+..|+||++.+.++  ++.++ |||.||..||..|+..+.+||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            3567899999998653  46787 9999999999999998899999999874

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=8.1e-12  Score=100.26  Aligned_cols=52  Identities=25%  Similarity=0.703  Sum_probs=43.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCC-----ceechhHHHHHHhcC--CCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLRSH--ANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR~~i~~~  208 (411)
                      .++..|.||++++.+++.+ ++| |+     |.||..||+.||..+  .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            4567899999999877766 588 96     999999999999765  4899999988654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5.7e-12  Score=97.50  Aligned_cols=49  Identities=31%  Similarity=0.569  Sum_probs=42.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .++..|+||++.+.+.   ++++ |||+||..||..|+..+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4567899999998664   6677 99999999999999988999999998753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.15  E-value=3e-11  Score=94.38  Aligned_cols=51  Identities=22%  Similarity=0.509  Sum_probs=42.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~i~~~  208 (411)
                      .++..|+||++.|.++   ++++.|||.||..||..|+..+  ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            4567899999999876   4565599999999999999765  6899999976543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.3e-11  Score=96.29  Aligned_cols=48  Identities=21%  Similarity=0.453  Sum_probs=42.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      .....|+||++.+.++   ++++ |||.||..||..|+.....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4567899999999764   5677 9999999999999998889999999875

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3.1e-11  Score=93.23  Aligned_cols=50  Identities=28%  Similarity=0.664  Sum_probs=41.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh---cCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR---SHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~i~~~  208 (411)
                      .++..|+||++.+.+.   ++++ |||.||..||..|+.   .+..||+||..+...
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            4677899999998764   5667 999999999999996   455799999988544

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.8e-11  Score=92.22  Aligned_cols=50  Identities=24%  Similarity=0.594  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.+.++   .+++ |||.||..||..|+ ..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            4567899999999876   3466 99999999999999 4567899999987554

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.12  E-value=1.7e-11  Score=107.00  Aligned_cols=49  Identities=37%  Similarity=0.838  Sum_probs=42.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      +++..|+||++.|.++   ++++ |||.||..||..|+..+.+||+||..+..
T Consensus        51 ~~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           51 ENELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            4556899999999764   6777 99999999999999999999999998753

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.10  E-value=9e-12  Score=107.00  Aligned_cols=51  Identities=29%  Similarity=0.617  Sum_probs=1.6

Q ss_pred             cCCCcccccccccccC-------------c--eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEN-------------D--YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~-------------~--~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ..++.|+||++.|.+.             +  .+..++ |+|.||..||+.||..+.+||+||.++.
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CCC----------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            3567899999999762             2  223345 9999999999999999999999999854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.05  E-value=1e-10  Score=91.71  Aligned_cols=50  Identities=18%  Similarity=0.469  Sum_probs=42.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.|.++   ++++ |||.||..||..|+.. +.+||+||..+...
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4678899999999875   5567 9999999999999976 77899999987543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.04  E-value=5.5e-11  Score=98.29  Aligned_cols=51  Identities=33%  Similarity=0.761  Sum_probs=42.9

Q ss_pred             hcCCCcccccccccccCceEEE-cCCCCceechhHHHHHHhcC-CCCCccCcCccCC
Q 015232          154 LREARDCAVCLLEFEENDYVRT-LPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLT  208 (411)
Q Consensus       154 ~~~~~~C~ICle~f~~~~~~~~-Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~~  208 (411)
                      ..+...|+||++.|.++   +. ++ |||.||..||..|+..+ ..||+||..+...
T Consensus        19 l~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            35678899999999764   45 76 99999999999999877 6899999988543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.04  E-value=1.2e-10  Score=91.67  Aligned_cols=49  Identities=35%  Similarity=0.761  Sum_probs=42.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc------CCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS------HANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~i~~  207 (411)
                      .++..|+||++.+.++   .+++ |||.||..||..|+..      ...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4567899999999876   4677 9999999999999976      6689999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=87.14  Aligned_cols=43  Identities=33%  Similarity=0.756  Sum_probs=37.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh---cCCCCCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR---SHANCPLC  201 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~---~~~tCPlC  201 (411)
                      .++..|+||++.+.++   ++++ |||.||..||..|+.   .+..||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4678899999999875   5677 999999999999997   45679998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.04  E-value=9.6e-11  Score=99.50  Aligned_cols=52  Identities=25%  Similarity=0.622  Sum_probs=44.9

Q ss_pred             cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .++..|+||++.|.++    +.+++++ |||.||..||+.|+..+.+||+||..+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            3567899999999775    4557777 99999999999999999999999998754

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=91.53  Aligned_cols=50  Identities=28%  Similarity=0.684  Sum_probs=42.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc------CCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS------HANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.+.+.   ++++ |||.||..||..|+..      ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            4567899999999775   4567 9999999999999976      77899999988643

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=91.43  Aligned_cols=51  Identities=18%  Similarity=0.501  Sum_probs=42.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~i~~~  208 (411)
                      +...+|+||.+.+..++...   .|+|.||..||.+||+.+  .+||+||..+...
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            45688999999998775443   499999999999999877  7899999887544

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=95.78  Aligned_cols=49  Identities=24%  Similarity=0.620  Sum_probs=42.3

Q ss_pred             cCCCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .+...|+||++.|.++   +++ + |||.||..||..|+..+..||+||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           20 DDLLRCGICFEYFNIA---MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCCcccCChhhCCc---CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            4567899999999774   444 6 99999999999999988899999998754

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=4.5e-11  Score=93.51  Aligned_cols=49  Identities=29%  Similarity=0.686  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-------CCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-------HANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~i~~  207 (411)
                      .++..|+||++.|.++   ++++ |||.||..||..|+..       ...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            5678899999999875   4577 9999999999999976       5679999998754

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.01  E-value=1.6e-10  Score=96.34  Aligned_cols=52  Identities=27%  Similarity=0.592  Sum_probs=43.7

Q ss_pred             hhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       153 ~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      ...++..|+||++.+.++  +.+++ |||.||..||..|+..+..||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             ccCCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            345678999999999764  33346 99999999999999988999999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=85.21  Aligned_cols=43  Identities=33%  Similarity=0.852  Sum_probs=36.5

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHH---hcCCCCCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL---RSHANCPLC  201 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl---~~~~tCPlC  201 (411)
                      .+...|+||++.+.++   ++++ |||+||..||..|+   ..+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4677899999999876   5577 99999999999995   456789998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.00  E-value=2.4e-10  Score=86.67  Aligned_cols=52  Identities=19%  Similarity=0.572  Sum_probs=41.1

Q ss_pred             CCCccccccc-ccccCceE-EEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232          156 EARDCAVCLL-EFEENDYV-RTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle-~f~~~~~~-~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~  208 (411)
                      ++..|+||++ .+.++... .+++ |||.||..||+.|+.. +..||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            3567999999 78776543 4566 9999999999999754 46799999988543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.98  E-value=2.5e-10  Score=97.42  Aligned_cols=49  Identities=29%  Similarity=0.552  Sum_probs=41.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~  207 (411)
                      .+...|+||++.|.++   ++++ |||.||..||..|+..+. .||+||..+..
T Consensus        50 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4567899999999865   5677 999999999999997544 89999998865

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.97  E-value=3.3e-10  Score=101.25  Aligned_cols=77  Identities=27%  Similarity=0.533  Sum_probs=52.0

Q ss_pred             CCCCHHHHhcCCceeecccccc--chhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcC
Q 015232          128 YGLDDSVIKTIPLSLFTAKNKT--TSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAG  204 (411)
Q Consensus       128 ~gls~~~i~~Lp~~~~~~~~~~--~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~  204 (411)
                      .+++...+...+..........  ..+...+...|+||++.|.++  +.+++ |||.||..||..|+.. +..||+||..
T Consensus        23 ~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~   99 (165)
T 2ckl_B           23 WELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKK   99 (165)
T ss_dssp             CCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCB
T ss_pred             ccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCc
Confidence            4556666666554433322211  112224566899999999864  44446 9999999999999986 7789999998


Q ss_pred             ccC
Q 015232          205 IFL  207 (411)
Q Consensus       205 i~~  207 (411)
                      +..
T Consensus       100 ~~~  102 (165)
T 2ckl_B          100 LVS  102 (165)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.97  E-value=3.9e-10  Score=91.02  Aligned_cols=49  Identities=22%  Similarity=0.544  Sum_probs=41.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~i~  206 (411)
                      .++..|+||++.|.++   ++++.|||.||..||..|+..+  ..||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            5678899999999876   5665599999999999999643  58999999874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.95  E-value=3.1e-10  Score=96.28  Aligned_cols=53  Identities=25%  Similarity=0.611  Sum_probs=44.6

Q ss_pred             cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ++...|+||++.+.+.    ...+.++ |||+||..||+.|+..+.+||+||..+...
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            4567899999999763    3446676 999999999999999999999999988543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.92  E-value=3.9e-10  Score=93.84  Aligned_cols=50  Identities=28%  Similarity=0.631  Sum_probs=41.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC---CCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA---NCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~i~~~  208 (411)
                      .+...|+||++.+.++   ++++ |||.||..||..|+..+.   .||+||..+...
T Consensus        19 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           19 QKILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HHHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             cCCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            4567899999999775   4567 999999999999997654   799999987643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.88  E-value=8.6e-10  Score=97.97  Aligned_cols=50  Identities=22%  Similarity=0.498  Sum_probs=42.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~~  208 (411)
                      .+...|+||++.|.++   ++++ |||.||..||..|+.... .||+||..+...
T Consensus        76 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             ccCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4567899999999775   5577 999999999999998654 799999998654

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.81  E-value=1.2e-09  Score=91.96  Aligned_cols=50  Identities=28%  Similarity=0.539  Sum_probs=42.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~  208 (411)
                      .++..|+||++.+.++   ++++ |||.||..||..|+.. ..+||+||..+...
T Consensus        21 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           21 VKSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HHHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cCCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            4567899999999765   5577 9999999999999976 67899999987653

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.81  E-value=1.1e-09  Score=92.89  Aligned_cols=50  Identities=26%  Similarity=0.644  Sum_probs=42.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~~  208 (411)
                      .+...|+||++.+.++   ++++ |||.||..||..|+.... +||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            4567899999999775   5677 999999999999997655 899999988653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.81  E-value=2.4e-09  Score=86.26  Aligned_cols=49  Identities=12%  Similarity=0.023  Sum_probs=43.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .+...|+||++.|+++   ++++ |||.|+..||..|+..+.+||+|+..+..
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            4678999999999887   7787 99999999999999988899999998754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.79  E-value=9.9e-10  Score=92.40  Aligned_cols=49  Identities=27%  Similarity=0.645  Sum_probs=41.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~  207 (411)
                      .++..|+||++.+.++   ++++ |||.||..||..|+.. +..||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3457899999999875   6677 9999999999999965 6689999998753

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.78  E-value=2.9e-09  Score=81.37  Aligned_cols=48  Identities=19%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             cCCCcccccccccccCceEEEc--CCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTL--PGCSHS-FHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~L--p~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +++.+|.||++...+.   ..+  | |||. |+..|+..|...+..||+||..+.
T Consensus         6 ~~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            3566899999987653   333  8 9999 899999999998889999999874

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.77  E-value=4.3e-09  Score=87.21  Aligned_cols=50  Identities=16%  Similarity=0.096  Sum_probs=44.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCC-ceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCS-HSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .++..|+||++.|+++   ++++ || |.|+..||..|+..+.+||+|+..+...
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            3578899999999887   6777 99 9999999999998888999999987643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.76  E-value=3.7e-09  Score=87.94  Aligned_cols=50  Identities=12%  Similarity=0.043  Sum_probs=44.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.|.++   ++++ |||.|+..||..|+..+.+||+|+..+...
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            4678999999999887   6777 999999999999999888999999987543

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.74  E-value=3.1e-09  Score=93.49  Aligned_cols=49  Identities=20%  Similarity=0.400  Sum_probs=41.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~  207 (411)
                      ++...|+||++.+.++   +.++ |||.||..||..|+.... .||+||.++..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4677899999999876   5566 999999999999997654 79999998744

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.73  E-value=5e-09  Score=83.44  Aligned_cols=53  Identities=19%  Similarity=0.402  Sum_probs=40.5

Q ss_pred             cCCCcccccccccccCce-EEEcCCCCceechhHHHHHHh-cCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDY-VRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~-~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~~~  208 (411)
                      +++..|+||++.+...+. +..++ |||.||..|+..|+. .+..||+||..+...
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            567789999999865432 22244 999999999998874 456799999988654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.73  E-value=5.3e-09  Score=106.21  Aligned_cols=48  Identities=27%  Similarity=0.707  Sum_probs=41.1

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~~  207 (411)
                      ....|+||++.+.+   .+.++ |||.||..||..|+. .+.+||+||..+..
T Consensus       331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            34689999999865   46777 999999999999998 67889999998754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.70  E-value=6.5e-09  Score=79.11  Aligned_cols=50  Identities=18%  Similarity=0.408  Sum_probs=40.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +....|.||++...+. .+..+| |||+ |+..|+..|...+..||+||..|.
T Consensus         5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            4567899999986553 122237 9998 999999999988889999999873

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.68  E-value=3.7e-09  Score=89.49  Aligned_cols=48  Identities=23%  Similarity=0.619  Sum_probs=41.1

Q ss_pred             cCCCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.|.++   +++ + |||.||..||..|+.  ..||+||..+...
T Consensus        20 ~~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           20 EKLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hhCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            5678899999999876   555 6 999999999999987  7899999987543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.66  E-value=4.9e-09  Score=77.73  Aligned_cols=47  Identities=28%  Similarity=0.603  Sum_probs=39.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.|.++   ++++ |||.||..||..|   ...||+||..+...
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4567899999999876   6787 9999999999884   56799999987543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.61  E-value=6.1e-09  Score=81.52  Aligned_cols=44  Identities=25%  Similarity=0.636  Sum_probs=37.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +++..|.||++.+.+   ...+| |||. ||..|+..|    ..||+||..+.
T Consensus        22 ~~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           22 QEEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             ccCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            456789999998766   36777 9999 999999999    78999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.55  E-value=2.9e-08  Score=94.12  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~  207 (411)
                      .....|+||++.|.++   ++++ |||.||..||..|+.. +.+||+|+.++..
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            3567899999999887   6787 9999999999999975 4459999998854

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.7e-08  Score=81.38  Aligned_cols=47  Identities=23%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC------CCCCc--cCcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH------ANCPL--CRAG  204 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~------~tCPl--CR~~  204 (411)
                      .....|+||++.|.++   ++++.|||.|+..||..|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4567899999999886   5553499999999999999653      48999  9865

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.49  E-value=1.9e-08  Score=100.40  Aligned_cols=52  Identities=21%  Similarity=0.606  Sum_probs=39.9

Q ss_pred             cCCCcccccccccccCce----EEEcCCCCceechhHHHHHHhcC-----------CCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDY----VRTLPGCSHSFHVDCIDIWLRSH-----------ANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~----~~~Lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~i~  206 (411)
                      +...+|+||++.+.++..    ....+.|+|.||..||.+||...           .+||.||.+|.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            567899999999987322    12223599999999999999642           35999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.46  E-value=4.5e-08  Score=87.67  Aligned_cols=50  Identities=26%  Similarity=0.635  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-CCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~~  208 (411)
                      .+...|+||++.+.++   ++++ |||.||..||..|+... .+||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4567899999999876   5577 99999999999999654 4899999987553

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=1.4e-07  Score=72.97  Aligned_cols=45  Identities=29%  Similarity=0.706  Sum_probs=37.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .+...|.||++...+   ++.+| |||+ ||..|+..    ...||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            457789999998765   47788 9999 99999984    4689999998754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=4.4e-08  Score=76.63  Aligned_cols=45  Identities=24%  Similarity=0.597  Sum_probs=36.5

Q ss_pred             cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .++..|+||++.+.+.   +.++ |||. ||..|+..    ...||+||..+..
T Consensus        23 ~~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            3456899999998664   5677 9999 99999964    3679999998743

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.38  E-value=1.8e-07  Score=75.95  Aligned_cols=48  Identities=21%  Similarity=0.562  Sum_probs=39.6

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc--------CCCCCc--cCcC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--------HANCPL--CRAG  204 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--------~~tCPl--CR~~  204 (411)
                      +..+|+||++++..++.+...+ |||.||..|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4678999999998876666666 9999999999998752        236999  9987

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.38  E-value=1.7e-07  Score=71.07  Aligned_cols=48  Identities=21%  Similarity=0.563  Sum_probs=37.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCC--c---eechhHHHHHHhc--CCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCS--H---SFHVDCIDIWLRS--HANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~i~  206 (411)
                      ++...|.||+++.  ++.+ ++| |.  |   .||..||+.|+..  +.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4677899999983  3334 577 65  4   9999999999953  678999998764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.38  E-value=6.6e-08  Score=88.62  Aligned_cols=49  Identities=12%  Similarity=0.082  Sum_probs=41.9

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-CCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~  207 (411)
                      .....|+||++.|.++   ++++ |||.|+..||..|+..+ .+||+|+.++..
T Consensus       104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            4678999999999886   6777 99999999999999753 469999998754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.29  E-value=8.9e-08  Score=76.11  Aligned_cols=45  Identities=31%  Similarity=0.622  Sum_probs=37.3

Q ss_pred             cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~  207 (411)
                      .++..|.||++.+.+   ...+| |||. ||..|+..|    ..||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           16 KEAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            456789999998765   47788 9999 999999987    389999998754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.20  E-value=4.9e-07  Score=68.59  Aligned_cols=48  Identities=10%  Similarity=0.138  Sum_probs=40.6

Q ss_pred             CCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          157 ARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ...|+||++.++++   +++ + |||+|...||++|+..+.+||+++.++...
T Consensus         3 ~~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            3 HMLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             -CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             eEEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            35799999999876   555 5 999999999999998888899999887543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.15  E-value=4e-07  Score=91.19  Aligned_cols=45  Identities=33%  Similarity=0.715  Sum_probs=38.4

Q ss_pred             hcCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232          154 LREARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       154 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      .+++..|+||++.+.+.   +.+| |||. ||..|+..|    ..||+||..+.
T Consensus       292 l~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             HHTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CcCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            35678999999998663   6778 9999 999999988    67999999874

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.10  E-value=1e-06  Score=85.09  Aligned_cols=51  Identities=22%  Similarity=0.518  Sum_probs=41.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCc--cCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPL--CRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPl--CR~~i~~~  208 (411)
                      .....|+||++.|.++  |+... |||.|+..||..|+..+  ..||+  |+..+...
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred             ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence            4567899999999876  44445 99999999999999754  46999  99977544

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.72  E-value=2e-05  Score=65.50  Aligned_cols=46  Identities=30%  Similarity=0.647  Sum_probs=37.1

Q ss_pred             cccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccC
Q 015232          159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFL  207 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~  207 (411)
                      -|.+|--.+.  ...+++| |+|+||.+|+..|. +..++||+|+..|..
T Consensus         3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            3777766543  3578998 99999999999997 456789999998854

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.64  E-value=4.2e-05  Score=72.79  Aligned_cols=50  Identities=20%  Similarity=0.537  Sum_probs=40.6

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC--CCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~~i~~~  208 (411)
                      ....|.||.+....+   ...+.|+|.||..|+..|++.+.  .||.|+......
T Consensus       179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            467899999998876   44445999999999999997654  799999876443

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=91.96  E-value=0.078  Score=40.53  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC----CCCCccCcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----ANCPLCRAG  204 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~  204 (411)
                      .....|.||.+.   + .+..-..|...||..|++..|...    -.||.|...
T Consensus        10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            345679999753   3 345555699999999999887543    259999754

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.10  E-value=0.16  Score=40.88  Aligned_cols=34  Identities=15%  Similarity=0.372  Sum_probs=24.6

Q ss_pred             CCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232          157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW  191 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W  191 (411)
                      +..|.||++.+.......-+. |+|.|+..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            467999998743322222266 9999999999984

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=86.83  E-value=0.15  Score=38.10  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=35.5

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-----cCCCCCccCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----SHANCPLCRA  203 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~  203 (411)
                      ++...|+||...+.++...+.-..|...||..|+.--..     ..-.||.|+.
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            466789999998865555555556999999999874321     3456999965

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=85.05  E-value=0.37  Score=43.90  Aligned_cols=49  Identities=20%  Similarity=0.502  Sum_probs=35.7

Q ss_pred             CCcccccccccccCce---EEEcCCCCceechhHHHHH------Hh-----cCCCCCccCcCc
Q 015232          157 ARDCAVCLLEFEENDY---VRTLPGCSHSFHVDCIDIW------LR-----SHANCPLCRAGI  205 (411)
Q Consensus       157 ~~~C~ICle~f~~~~~---~~~Lp~C~H~FH~~CI~~W------l~-----~~~tCPlCR~~i  205 (411)
                      +..|+||...+.+++.   .+....|.+.||..|+.--      +.     ..-.||.|+..-
T Consensus         2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            3469999999988763   6666679999999998421      11     156899998753

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=83.96  E-value=0.52  Score=35.11  Aligned_cols=45  Identities=22%  Similarity=0.575  Sum_probs=32.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRA  203 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~  203 (411)
                      ..+..|.||.+.   + .+..-..|...||..|+..=+..    .-.||.|..
T Consensus         9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            466789999873   3 44555569999999999975432    235999964

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=83.82  E-value=0.29  Score=44.90  Aligned_cols=46  Identities=28%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG  204 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~  204 (411)
                      ..++.|.+|.+.    ..+.....|...||..|+..-+..    .-.||.|+..
T Consensus         5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~   54 (207)
T 3u5n_A            5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI   54 (207)
T ss_dssp             SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence            466789999753    345556679999999999876643    2359999764

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=81.25  E-value=0.37  Score=43.26  Aligned_cols=45  Identities=27%  Similarity=0.510  Sum_probs=32.6

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG  204 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~  204 (411)
                      .++.|.||.+.   ++ +.....|...||..|+..-+..    .-.||.|+..
T Consensus         3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   51 (184)
T 3o36_A            3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL   51 (184)
T ss_dssp             SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence            56779999854   33 4455569999999999776543    2359999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	411
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-22
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-13
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	9e-12
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-10
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-04
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 85.7 bits (212), Expect = 9e-22
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207
           A+ +  +CAVCL E E+ +  R LP C H FH +C+D+WL SH+ CPLCR  + +
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 63.0 bits (153), Expect = 1e-13
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
            A  C +CL +         LP C H+F   CI  W+R +  CPLC+  +
Sbjct: 4   VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 9e-12
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRA 203
           +C +C+   E +D       C +     C        +  CP CR 
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 16/63 (25%)

Query: 156 EARDCAVCLLEFEENDY---------------VRTLPGCSHSFHVDCIDIWLRSHANCPL 200
              +CA+C     +                  V     C+H+FH  CI  WL++   CPL
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPL 78

Query: 201 CRA 203
              
Sbjct: 79  DNR 81

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 4e-11
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIFLTESPFV 213
           C +C    ++   V+  P C H     C+  W  S    CP CR  I  TE   V
Sbjct: 26  CKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 76

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 156 EARDCAVCLLEFEENDYVRTLP-GCSHSFHVDCIDIWLR-SHANCPLCRAGI 205
           + + C  C      N  ++ +   C H+    C+D+       NCP C   +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 4e-10
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE 209
           C  C  E +     + LP C H+    C++    S   CP+C+A   L  
Sbjct: 9   CQQCQAEAKC---PKLLP-CLHTLCSGCLE---ASGMQCPICQAPWPLGA 51

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 52.9 bits (126), Expect = 5e-10
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 156 EARDCAVCLLEFEENDYVRTLP----GCSHSFHVDCIDIWLRSHAN--CPLCRA 203
           E  D  VC +  EE    R       G   + H  C+  WL    N  C +C  
Sbjct: 2   EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 148 KTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN---CPLCRAG 204
           +    A+++  +C +CL   +E     +   C H F   C+   L        CPLC+  
Sbjct: 12  QNVINAMQKILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

Query: 205 I 205
           I
Sbjct: 68  I 68

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-----HANCPLCRA 203
             +   +      V  L  CSH+FH+ C+     +        CP C+ 
Sbjct: 42  SDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 145 AKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG 204
           A ++     L +   C+ C            L GC H F  +C+   +     CP+C   
Sbjct: 10  AHSRAALDRLEKLLRCSRCT---NILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTP 64

Query: 205 IFLTESPFVPIMAA------RIRPSLDDSSL 229
            ++ +      + +      ++R  L D+ L
Sbjct: 65  AWIQDLKINRQLDSMIQLCSKLRNLLHDNEL 95

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLTE 209
               ++  C +C       D V T   C H F   CI   L+   + CP CR   F T+
Sbjct: 18  AHFVKSISCQICEHILA--DPVET--SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 9/52 (17%)

Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN--------CPLCR 202
            C +CL E+        +  C   F   C+  ++             CP   
Sbjct: 7   GCKLCLGEYPVEQMTT-IAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 5/56 (8%)

Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPI 215
           CA+                    F    ++ +++   N P+      L+    V I
Sbjct: 3   CAISGKVPRRPVLSPK---SRTIFEKSLLEQYVKDTGNDPITNE--PLSIEEIVEI 53

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-----CPLCR 202
            +  C  C   +  +++      C   FH  C+ I      +     CP C 
Sbjct: 5   SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.62
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.37
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.32
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.3
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.27
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.24
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.14
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.0
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.98
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.98
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.84
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.82
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.77
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.76
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.62
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.34
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	88.1
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	84.77
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	82.51
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	80.79

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.62  E-value=8.8e-17  Score=118.73  Aligned_cols=52  Identities=48%  Similarity=1.177  Sum_probs=47.7

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      +++.+|+||+++|.+++.+.+++.|+|.||..||..|++.+.+||+||.+|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4667899999999999999888779999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.37  E-value=1.4e-13  Score=105.13  Aligned_cols=48  Identities=35%  Similarity=0.878  Sum_probs=42.0

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ..++|+||++.+.+.  ++.++ |||.||..||..|++.+.+||+||.++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            467899999998653  56677 9999999999999999999999999863

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.3e-13  Score=107.98  Aligned_cols=51  Identities=29%  Similarity=0.578  Sum_probs=42.6

Q ss_pred             cCCCcccccccccccCc---------------eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEEND---------------YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~  206 (411)
                      ..+++|+||++.+.+..               .+..++ |||+||..||..||+.+.+||+||++..
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            35667999999886532               356676 9999999999999999999999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.9e-13  Score=98.28  Aligned_cols=47  Identities=21%  Similarity=0.448  Sum_probs=39.4

Q ss_pred             cccccccccccCceE-EEcCCCCceechhHHHHHHhc-CCCCCccCcCcc
Q 015232          159 DCAVCLLEFEENDYV-RTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIF  206 (411)
Q Consensus       159 ~C~ICle~f~~~~~~-~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~  206 (411)
                      +|+||+++|..++.+ ++++ |||.||..||+.|++. +..||+||.++.
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            699999999877654 4455 9999999999999975 446999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.1e-12  Score=109.02  Aligned_cols=52  Identities=25%  Similarity=0.518  Sum_probs=40.4

Q ss_pred             CCCcccccccccccC---------------ceEEEcCCCCceechhHHHHHHhcC-----CCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEEN---------------DYVRTLPGCSHSFHVDCIDIWLRSH-----ANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~---------------~~~~~Lp~C~H~FH~~CI~~Wl~~~-----~tCPlCR~~i~~~  208 (411)
                      .+++|+||++.|...               ..+.+++ |+|+||..||+.||...     .+||+||+.+...
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            456899999998542               2455666 99999999999999643     4799999877443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-12  Score=97.69  Aligned_cols=51  Identities=22%  Similarity=0.526  Sum_probs=40.3

Q ss_pred             CCCcccccccccccC-c-eEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccC
Q 015232          156 EARDCAVCLLEFEEN-D-YVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFL  207 (411)
Q Consensus       156 ~~~~C~ICle~f~~~-~-~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~  207 (411)
                      ++..|+||++++..+ + .+.+++ |||.||..||..|+.. +..||+||..|..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            467899999987543 3 345566 9999999999999954 5579999998744

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.4e-12  Score=99.49  Aligned_cols=49  Identities=29%  Similarity=0.710  Sum_probs=40.9

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~~~  208 (411)
                      ....|+||++.+.+   .++++ |||.||..||..||. .+.+||+||..|...
T Consensus        22 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          22 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             CTTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            34579999998865   47787 999999999999997 456799999998654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=5.7e-12  Score=92.57  Aligned_cols=47  Identities=13%  Similarity=0.209  Sum_probs=40.8

Q ss_pred             cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      .|+||++.++++   ++++.|||+||..||.+||+.+.+||+||.++...
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            599999999775   45545999999999999999999999999987654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.8e-11  Score=94.75  Aligned_cols=50  Identities=28%  Similarity=0.570  Sum_probs=41.6

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLTE  209 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~~  209 (411)
                      +...|+||++.+.++   ++++ |||.||..||..|++. +.+||+||.++...+
T Consensus        22 ~~l~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCcCCccCCcchhcc---eecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            456899999998775   6777 9999999999999964 457999999876543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.3e-11  Score=96.37  Aligned_cols=49  Identities=29%  Similarity=0.645  Sum_probs=40.9

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC---CCCccCcCccC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA---NCPLCRAGIFL  207 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~i~~  207 (411)
                      ++...|+||++.|.++   ++++ |||.||..||..|+....   .||+||..+..
T Consensus        19 ~~~l~CpIC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          19 QKILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             HHHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             ccCcCCCccCchhCCe---EEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            4557899999999876   5677 999999999999996553   69999998754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.5e-11  Score=88.57  Aligned_cols=46  Identities=28%  Similarity=0.639  Sum_probs=38.7

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ...+|+||++.+.++   ++++ |||.||..||+.|   +.+||+||..+...
T Consensus         5 ~~l~C~IC~~~~~~p---~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             CCCCCcccCcccCCC---EEec-CCCHHhHHHHHcC---CCcCcCCCCcccCC
Confidence            446899999999875   6788 9999999999876   56799999998654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.84  E-value=6.8e-10  Score=82.07  Aligned_cols=52  Identities=19%  Similarity=0.519  Sum_probs=37.9

Q ss_pred             cCCCcccccccccccCceEE-EcCCCCceechhHHHHHHh--cCCCCCccCcCcc
Q 015232          155 REARDCAVCLLEFEENDYVR-TLPGCSHSFHVDCIDIWLR--SHANCPLCRAGIF  206 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~-~Lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~i~  206 (411)
                      ++...|.||++++.+..... ...+|+|.||..||+.|+.  .+.+||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            56778999999986542111 1112469999999999994  4568999998763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.7e-10  Score=91.08  Aligned_cols=50  Identities=24%  Similarity=0.656  Sum_probs=39.9

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE  209 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~  209 (411)
                      .+...|+||++.|.++   ++++.|||.||..||..|+.  ..||+||..+...+
T Consensus        20 ~~~l~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             hhcCCCccCCchhhcC---ceeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            4567899999999876   33433999999999999984  45999998875543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.8e-09  Score=84.10  Aligned_cols=50  Identities=12%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~  208 (411)
                      .++..|+||++.|.++   ++++ |||.|+..||..|+.. +.+||+|+..+...
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh---cccC-CcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            3677899999999886   5677 9999999999999964 55799999987543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=2.8e-09  Score=82.42  Aligned_cols=50  Identities=16%  Similarity=0.420  Sum_probs=42.4

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-CCCCccCcCccCC
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLT  208 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~~  208 (411)
                      .++..|+||++.|.++   ++++ |||.|+..||..|+..+ ..||.|+..+...
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCc---eEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4678899999999886   5677 99999999999999754 5699999987543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-08  Score=82.90  Aligned_cols=50  Identities=14%  Similarity=0.097  Sum_probs=43.0

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT  208 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~  208 (411)
                      ++..|+||++.|.++   ++++.|+|.|+..||..||..+.+||+|+.++...
T Consensus        21 ~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             HHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            578999999999887   67773556899999999999999999999987543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=75.18  Aligned_cols=48  Identities=19%  Similarity=0.492  Sum_probs=38.2

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-----C---CCCCccCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-----H---ANCPLCRA  203 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-----~---~tCPlCR~  203 (411)
                      ....+|+||++++...+.+..++ |+|.||..|+..|+..     .   ..||.|+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            35678999999998777777776 9999999999999842     1   24998754

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.091  Score=35.87  Aligned_cols=44  Identities=30%  Similarity=0.620  Sum_probs=31.0

Q ss_pred             cccccccccccCceEEEcCCCCceechhHHHHHHhcC----CCCCccCc
Q 015232          159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----ANCPLCRA  203 (411)
Q Consensus       159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~  203 (411)
                      .|.||...-. ++.++.-..|...||..|++.-+...    -.||.|+.
T Consensus         2 ~C~vC~~~~~-~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCC-CCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            4888876543 33455566799999999999866432    24999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.77  E-value=0.23  Score=35.28  Aligned_cols=48  Identities=21%  Similarity=0.575  Sum_probs=35.8

Q ss_pred             CCCcccccccccccCceEEEcCCCCceechhHHHH---HHh--cCCCCCccCc
Q 015232          156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI---WLR--SHANCPLCRA  203 (411)
Q Consensus       156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~---Wl~--~~~tCPlCR~  203 (411)
                      ....|.||.+...+++..+.-..|+..||..|+..   ...  .+-.||.|+.
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~   57 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcC
Confidence            56689999998777766666667999999999963   211  2346999964

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=0.095  Score=37.27  Aligned_cols=47  Identities=23%  Similarity=0.493  Sum_probs=32.6

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcCc
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAGI  205 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~i  205 (411)
                      ..++.|.||.+.   + .++.-..|.-.||..|+...+..    .-.||.|+...
T Consensus         7 ~~~~~C~~C~~~---g-~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCcCCCcCCCCC---C-eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            455679999753   3 34555569999999999865532    23599997643

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.79  E-value=0.33  Score=36.98  Aligned_cols=35  Identities=20%  Similarity=0.479  Sum_probs=26.0

Q ss_pred             cCCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232          155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW  191 (411)
Q Consensus       155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W  191 (411)
                      ..+..|.|| +.+...++. -.--|+-+||..|+.+-
T Consensus        13 ~~D~mC~vC-~v~t~~~l~-pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          13 VNDEMCDVC-EVWTAESLF-PCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTT-CCCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred             CcCcccccc-Cccccccee-cceeecchhhHHHHHHh
Confidence            567899999 777665432 22248999999999986