Citrus Sinensis ID: 015253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQA
ccccEEEEEEEcccccEEEEEEEEEccccccccccccccEEEccccccccEEEcccccccEEEEEccccEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEcccccEEEEccccEEEEEEcccEEEEEcccccccccccccccEEcEEEEcccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccEEccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEcccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEcccccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEcccccccEEEEEEEEEccEEEEEEEccccEEEEEEccccccc
cccccEEEEEEEccEEEEEEEcccccccccccccccccccHcccccccccHHHHHHHHHEHHHHHcccccEEEEEEccccEEEEEcccccccccccccccccccEEHHHHccEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHcccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEHHHccccEEEEcccEEEEEEEEcccccccccccEEccccccc
madryrlfsieelpSHLIFEILTSGRLSAVDLAHLELtsktfggshglypqkFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHssdivetsagnmqitTGRYHTLLisnssvfscgsslcgvlghgpettqcvsftrinfpsaaHVVQVSASENHAAFVlqsgqvftcgdnssfccghrdtnrpifrPRLVEalkgvpckqvtaglnFTGFLTIRGHvhtcgsnthgqlghgdtldrptpksiapleevgsvvqiaagpSYMLAVTGNgvvysfgsgsnfclghgeqhdelqPRAIQTFRRKGIHVVRVSAGDEHVVALdssgyvytwgkgycgalghgdeidktlpeplsslkshLAVQGLSVLAEVCptivqedtrscsdiichdstqa
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVrvsagdehvvaLDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVqedtrscsdiichdstqa
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQA
****YRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL***************PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIIC******
*****RL*SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWK****************ETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSD**CHD****
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQA
***RYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICH*****
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MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query410 2.2.26 [Sep-21-2011]
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.560 0.047 0.320 1e-24
Q9FN03 440 Ultraviolet-B receptor UV no no 0.631 0.588 0.319 2e-24
Q15034 1050 Probable E3 ubiquitin-pro no no 0.590 0.230 0.305 5e-24
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.646 0.053 0.325 1e-23
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.607 0.051 0.328 3e-22
O95714 4834 E3 ubiquitin-protein liga no no 0.609 0.051 0.323 1e-21
Q5RCZ7 551 RCC1 and BTB domain-conta no no 0.6 0.446 0.296 5e-21
O95199 551 RCC1 and BTB domain-conta no no 0.6 0.446 0.296 5e-21
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.643 0.249 0.306 8e-21
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.643 0.249 0.310 9e-21
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--- 171
           I  G+Y T +IS + SV +CG    G LG G    Q  +  ++ F     + +VS+S   
Sbjct: 408 IEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQS-TLKKLTFEPHRSIKKVSSSKGS 466

Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGLNFTGF 230
           + H       G+VF+ GD      GH +++   + P+L++  L+G     V+AG   +  
Sbjct: 467 DGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKY-PKLIQGPLQGKVVVCVSAGYRHSAA 525

Query: 231 LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNG-V 289
           +T  G ++T G    G+LGHGD+  R  P  +  +  VG   +++ G S+ +A++ +G  
Sbjct: 526 VTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVG---EVSCGSSHTIALSKDGRT 582

Query: 290 VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 349
           V+SFG G N  LGHG+ +   +P+ I+    +G+ + +V AG +  +AL S+G VY WG 
Sbjct: 583 VWSFGGGDNGKLGHGDTNRVYKPKVIEAL--QGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 350 GYC 352
           G C
Sbjct: 641 GAC 643
Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
255575340497 Ran GTPase binding protein, putative [Ri 0.873 0.720 0.831 0.0
224114984478 predicted protein [Populus trichocarpa] 0.9 0.771 0.812 1e-180
147820281 511 hypothetical protein VITISV_023540 [Viti 0.963 0.772 0.788 1e-179
225461391492 PREDICTED: probable E3 ubiquitin-protein 0.963 0.802 0.788 1e-179
224128193492 predicted protein [Populus trichocarpa] 0.868 0.723 0.807 1e-179
356549747485 PREDICTED: probable E3 ubiquitin-protein 0.917 0.775 0.791 1e-173
255646519485 unknown [Glycine max] 0.917 0.775 0.788 1e-173
356544020485 PREDICTED: probable E3 ubiquitin-protein 0.917 0.775 0.786 1e-171
449446943491 PREDICTED: probable E3 ubiquitin-protein 0.958 0.800 0.727 1e-163
297830122488 regulator of chromosome condensation fam 0.895 0.752 0.733 1e-163
>gi|255575340|ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223532017|gb|EEF33828.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/379 (83%), Positives = 341/379 (89%)

Query: 1   MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
           MAD+YRL SI+ELPSHLI EIL +GRLSA DL  LELTSKTFGGSHGLYP KF+SLVD A
Sbjct: 1   MADKYRLVSIDELPSHLILEILMTGRLSATDLVCLELTSKTFGGSHGLYPHKFKSLVDFA 60

Query: 61  ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
           A QLCA HS+Y GM  N Q ELL+RC GNWKRVLRFL +VE SS +VETSAGNMQITTGR
Sbjct: 61  AFQLCASHSVYTGMLWNAQKELLDRCGGNWKRVLRFLLAVEESSGMVETSAGNMQITTGR 120

Query: 121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
           YHTLLISNSSV+SCGSSLCGVLGHGPETTQCVSF+RI FPS A VVQVSAS NHAA++L+
Sbjct: 121 YHTLLISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHNHAAYILE 180

Query: 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
           SG+VFTCGDNSSFCCGH+DT+RPIFRPR VEALKGVPCKQV AGLNFT FLT  GHV++C
Sbjct: 181 SGEVFTCGDNSSFCCGHQDTSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTRTGHVYSC 240

Query: 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
           G+NTHGQLGHGDTLDRPTPK I   E +GSV QIAAGPSY+LAVT +GVVYSFGSGSNFC
Sbjct: 241 GTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVVYSFGSGSNFC 300

Query: 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360
           LGHGEQH+E  PRAIQTFRRK +HVVRVSAGDEHVVALDSSG+VYTWGKGYCGALGHGDE
Sbjct: 301 LGHGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFVYTWGKGYCGALGHGDE 360

Query: 361 IDKTLPEPLSSLKSHLAVQ 379
           IDKTLPEPL+SLKSHLAVQ
Sbjct: 361 IDKTLPEPLNSLKSHLAVQ 379

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114984|ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820281|emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461391|ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|302143037|emb|CBI20332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128193|ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549747|ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646519|gb|ACU23737.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544020|ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446943|ref|XP_004141229.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297830122|ref|XP_002882943.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297328783|gb|EFH59202.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.924 0.776 0.736 1.1e-151
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.943 0.727 0.335 1.9e-42
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.631 0.588 0.319 3.1e-28
TAIR|locus:505006603 1075 AT5G12350 "AT5G12350" [Arabido 0.675 0.257 0.321 4e-28
FB|FBgn0031107 4912 HERC2 "HECT and RLD domain con 0.646 0.053 0.321 5.1e-27
RGD|1306366 1203 Herc1 "HECT and RLD domain con 0.604 0.206 0.318 7.2e-27
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.604 0.050 0.318 4.1e-26
UNIPROTKB|F1RW66 1050 HERC3 "Uncharacterized protein 0.614 0.24 0.303 4.1e-26
RGD|1307803 909 Herc3 "HECT and RLD domain con 0.604 0.272 0.305 5.2e-26
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.663 0.056 0.319 6.5e-26
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 279/379 (73%), Positives = 310/379 (81%)

Query:     1 MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
             MADR  L S E+LPSHLI E+LTSGRLSAVDL  LELTSK FGGSHG YP KFRSL D A
Sbjct:     1 MADRNCLISFEDLPSHLILEVLTSGRLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYA 60

Query:    61 ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
             ASQLC++H +Y GM    Q EL   C GNWKR+  FLQSVE SSD+VETS G MQI TG+
Sbjct:    61 ASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGK 120

Query:   121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
             YHTLLI+NS V+SCG SL GVL HG ETTQCV+FT I FP  A V QVSA++NH+AFVLQ
Sbjct:   121 YHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180

Query:   181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
             SGQV TCGDNSS CCGH DT+RPIFRP+LVEALKG PCKQV AGL+FT FL+  GH +TC
Sbjct:   181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTC 240

Query:   241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
             GSNTHGQLGHGDTLDRP PK +  L+ +G VVQIAAGPSY+LAVT +G VYSFGSGSNFC
Sbjct:   241 GSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFC 300

Query:   301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360
             LGHGEQ DELQPR IQ F+RKGIH++RVSAGDEH VALDS+G VYTWGKGYCGALGHGDE
Sbjct:   301 LGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDE 360

Query:   361 IDKTLPEPLSSLKSHLAVQ 379
              DK  P+ L +L + LAVQ
Sbjct:   361 NDKITPQVLVNLNNCLAVQ 379
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0031107 HERC2 "HECT and RLD domain containing protein 2 ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1306366 Herc1 "HECT and RLD domain containing E3 ubiquitin protein ligase family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RW66 HERC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307803 Herc3 "HECT and RLD domain containing E3 ubiquitin protein ligase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-20
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-17
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
pfam0064648 pfam00646, F-box, F-box domain 0.002
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.004
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.004
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  109 bits (274), Expect = 4e-26
 Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 27/285 (9%)

Query: 94  LRFLQSVEHSSDIVETSAGNMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETT--- 149
           +    S +    +V       ++  G   ++ L ++  V+S G+  CG LG G       
Sbjct: 166 VPGGSSAKSHLRVV-------KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK 218

Query: 150 QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR-----PI 204
             + FT +  P  A +VQ++A  +H   +   G+V+  G N     G   + R      +
Sbjct: 219 TSIQFTPLKVPKKA-IVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLV 277

Query: 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264
             P  +  +K V C     G + +  L   G ++  G N  GQLG G   +     +   
Sbjct: 278 GDPFAIRNIKYVAC-----GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332

Query: 265 LEEVGS---VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
            +++ S   +  I+AG S+ L +  +G +Y+FG G    LG  E+          T    
Sbjct: 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS--TPTKLSV 390

Query: 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366
            I + +V+ G  H +A    G VY+WG G  G LG+G +    L 
Sbjct: 391 AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLV 435

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184 476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.89
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.32
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.31
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.24
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.21
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.16
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.15
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.33
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 96.08
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.49
smart0025641 FBOX A Receptor for Ubiquitination Targets. 95.43
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.54
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 89.57
KOG0315311 consensus G-protein beta subunit-like protein (con 88.91
PHA03098534 kelch-like protein; Provisional 88.52
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 88.41
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.18
KOG0646476 consensus WD40 repeat protein [General function pr 87.86
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 87.7
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 87.54
KOG0315311 consensus G-protein beta subunit-like protein (con 87.25
PLN02153341 epithiospecifier protein 85.01
PF13013109 F-box-like_2: F-box-like domain 84.88
KOG0646 476 consensus WD40 repeat protein [General function pr 84.23
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 82.95
PHA02713557 hypothetical protein; Provisional 82.61
KOG2997366 consensus F-box protein FBX9 [General function pre 82.3
PLN02153341 epithiospecifier protein 82.05
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 81.95
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.4
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 80.17
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-48  Score=360.79  Aligned_cols=325  Identities=23%  Similarity=0.276  Sum_probs=257.5

Q ss_pred             hhccceeeccCccccceeeecccCccccceeeeeccccccceeecC----CCceEEEecCCeeEEE-ECCcEEEEeCCCC
Q 015253           65 CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETS----AGNMQITTGRYHTLLI-SNSSVFSCGSSLC  139 (410)
Q Consensus        65 ~~~~~~y~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~----~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~  139 (410)
                      ..+..+|. ||.|...+|+..+.+..          ...|.+.+..    ..|++++||+.|+++| +||+||+||.|..
T Consensus        65 ~~~~~v~~-~Gsn~~~eLGlg~de~~----------~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~  133 (476)
T COG5184          65 VKMASVYS-WGSNGMNELGLGNDETK----------VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD  133 (476)
T ss_pred             hheeeeEE-EecCcceeeccCCchhc----------ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence            44677888 88887777765333211          1223333333    5699999999999999 9999999999999


Q ss_pred             CccCCCC---------------CCCceeceeeecCCC----CCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCC
Q 015253          140 GVLGHGP---------------ETTQCVSFTRINFPS----AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT  200 (410)
Q Consensus       140 gqlG~~~---------------~~~~~~~p~~v~~~~----~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~  200 (410)
                      |+||...               .......|..++...    ..+|++++||.+++++|+++|+||+||....+.++.+..
T Consensus       134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~  213 (476)
T COG5184         134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSY  213 (476)
T ss_pred             cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccc
Confidence            9999776               111234566666522    237999999999999999999999999998888887743


Q ss_pred             CC-----ceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEE
Q 015253          201 NR-----PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA  275 (410)
Q Consensus       201 ~~-----~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia  275 (410)
                      ..     ....|..+.   ...|+++++|.+|.++|+++|+||+||+|..||||.........+..+..+.....|+.|+
T Consensus       214 ~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~va  290 (476)
T COG5184         214 KNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVA  290 (476)
T ss_pred             cccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcc
Confidence            21     224444443   4578999999999999999999999999999999999888887777777766656789999


Q ss_pred             eCCCeEEEEECCCcEEEEeCCCCcccCCCCCC----CccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCC
Q 015253          276 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH----DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY  351 (410)
Q Consensus       276 ~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~----~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~  351 (410)
                      ||.+|++||+++|++|+||.|-+||||.+...    ....|.....+  .+..|..|++|..|+++|..+|.||+||++.
T Consensus       291 cG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~  368 (476)
T COG5184         291 CGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTICSISAGESHSLILRKDGTLYAFGRGD  368 (476)
T ss_pred             cCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC--CCceEEEEecCcceEEEEecCceEEEecCCc
Confidence            99999999999999999999999999998221    11233333333  3446899999999999999999999999999


Q ss_pred             CCCCCCCC--CCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCCC
Q 015253          352 CGALGHGD--EIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQA  410 (410)
Q Consensus       352 ~gqLG~g~--~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ~  410 (410)
                      .+|||..+  ...+..|+++..  ..++.+   ++||..|+++.+++|+||+||.++.||.
T Consensus       369 ~~qlg~~~~~~~~~~~~~~ls~--~~~~~~---v~~gt~~~~~~t~~gsvy~wG~ge~gnl  424 (476)
T COG5184         369 RGQLGIQEEITIDVSTPTKLSV--AIKLEQ---VACGTHHNIARTDDGSVYSWGWGEHGNL  424 (476)
T ss_pred             cccccCcccceeecCCcccccc--ccceEE---EEecCccceeeccCCceEEecCchhhhc
Confidence            99999988  455556666543  235777   9999999999999999999999998873

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-25
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-05
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-25
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-05
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-25
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-05
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-25
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-15
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-05
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 5e-22
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-21
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-12
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 6e-12
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-06
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 4e-10
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-09
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-04
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 134/266 (50%), Gaps = 7/266 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 9   ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 68  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQ 379
            LGHGD  D  +P  L +L +    Q
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQ 269
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-77
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-73
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-71
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-58
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-57
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-39
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-29
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-76
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-72
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-61
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-54
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-11
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-63
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-62
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-61
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-52
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-50
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 6e-21
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-60
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-57
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 6e-52
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-49
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-06
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-57
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-55
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-51
3of7_A473 Regulator of chromosome condensation; beta-propell 5e-50
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-25
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-06
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-24
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-17
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-16
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-05
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  243 bits (623), Expect = 5e-77
 Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 7/267 (2%)

Query: 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
            I+ G  H++ + S   V S G    G LGHG +     S T+++      +V V+   +
Sbjct: 20  IISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGAD 78

Query: 174 HAAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
           H     QSG +V++ G       GH   +  +F P  ++AL G+  KQ+  G +    +T
Sbjct: 79  HTVAYSQSGMEVYSWGWGDFGRLGH-GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT 137

Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
           + G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y 
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYG 196

Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
           +G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    
Sbjct: 197 WGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254

Query: 353 GALGHGDEIDKTLPEPLSSLKSHLAVQ 379
           G LGHGD  D  +P  L +L +    Q
Sbjct: 255 GQLGHGDLEDHLIPHKLEALSNSFISQ 281
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.52
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.5
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.21
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 96.84
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.66
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 96.6
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.56
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.42
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.65
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.74
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.72
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.53
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 93.25
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 91.91
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 90.85
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 89.79
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 89.13
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 88.38
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 86.64
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 86.28
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 85.65
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 84.38
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 84.31
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 84.13
3p6j_A142 De novo designed beta-trefoil architecture with S 81.17
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=2e-66  Score=510.76  Aligned_cols=323  Identities=24%  Similarity=0.324  Sum_probs=285.9

Q ss_pred             cceeeecccCccccceeeeeccccccceeecCC--CceEEEecCCeeEEE-ECC-cEEEEeCCCCCccCCCCCCCceece
Q 015253           79 QIELLNRCNGNWKRVLRFLQSVEHSSDIVETSA--GNMQITTGRYHTLLI-SNS-SVFSCGSSLCGVLGHGPETTQCVSF  154 (410)
Q Consensus        79 ~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~--~i~~ia~G~~h~~~l-~~g-~vy~wG~n~~gqlG~~~~~~~~~~p  154 (410)
                      .|.||.||.+.+++++.........|..++.+.  +|++|+||..|+++| ++| +||+||.|.+||||.+.... ...|
T Consensus        34 ~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~-~~~p  112 (406)
T 4d9s_A           34 GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTP  112 (406)
T ss_dssp             TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCC-EEEE
T ss_pred             CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCc-cccc
Confidence            344444444444444433333334566665544  699999999999999 775 99999999999999988754 4567


Q ss_pred             eeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcC
Q 015253          155 TRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR  234 (410)
Q Consensus       155 ~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~  234 (410)
                      .++......+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++..+.+.+|++|+||.+|+++|+++
T Consensus       113 ~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~  191 (406)
T 4d9s_A          113 LPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT-EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED  191 (406)
T ss_dssp             EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETT
T ss_pred             eEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC-CCcccceEecccCCCcEEEEecCCCeEEEEeCC
Confidence            7777766679999999999999999999999999999999999887 567889999999999999999999999999999


Q ss_pred             CcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEE
Q 015253          235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRA  314 (410)
Q Consensus       235 G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~  314 (410)
                      |+||+||.|.+||||.+.......|.++..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++
T Consensus       192 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~  270 (406)
T 4d9s_A          192 GDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK  270 (406)
T ss_dssp             SCEEEEECCTTSTTCSSSSCCEEEEEECCCSTT-CCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred             CCEEEeeCCCCCCCCCCCCCCcCccEEecccCC-ceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence            999999999999999999888889999987765 6899999999999999999999999999999999999888889999


Q ss_pred             eeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEE
Q 015253          315 IQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQE  394 (410)
Q Consensus       315 i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~  394 (410)
                      ++.+.  +.+|++|+||.+|++||+++|+||+||.|.+||||.++......|++|+.+.+.++++   |+||.+|+++|+
T Consensus       271 v~~~~--~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~---va~G~~hs~alt  345 (406)
T 4d9s_A          271 LEALS--NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ---VSCGWRHTLAVT  345 (406)
T ss_dssp             CGGGT--TSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEE---EEECSSEEEEEE
T ss_pred             ecccC--CCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEE---EEeCCCeEEEEe
Confidence            98774  4579999999999999999999999999999999999999999999998887888999   999999999999


Q ss_pred             cCCCEEEeeeCCCCC
Q 015253          395 DTRSCSDIICHDSTQ  409 (410)
Q Consensus       395 ~~g~v~~wG~~~~gQ  409 (410)
                      ++|+||+||.|+.||
T Consensus       346 ~~G~v~~wG~n~~Gq  360 (406)
T 4d9s_A          346 ERNNVFAWGRGTNGQ  360 (406)
T ss_dssp             TTSCEEEEECCTTST
T ss_pred             CCCCEEEecCCCCCc
Confidence            999999999999998
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 410
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-20
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-19
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-17
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-17
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 9e-10
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 4e-21
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 5/197 (2%)

Query: 148 TTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRP 207
             +CV                         +   G V+  G ++    G   T       
Sbjct: 205 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ 264

Query: 208 RLVEALKGVPC-KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPL 265
            L             + G + T  +   G  ++ G   +G+LG G+   ++  P  I+ L
Sbjct: 265 NLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 324

Query: 266 EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325
               +V  +A G S   AVT +G V+++G G+N+ LG G+  D   P  +   + +   V
Sbjct: 325 P---AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVV 381

Query: 326 VRVSAGDEHVVALDSSG 342
           + VS+G +H V L    
Sbjct: 382 LSVSSGGQHTVLLVKDK 398
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.77
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.25
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.52
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.32
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 95.23
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 91.03
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 89.37
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.34
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-54  Score=417.48  Aligned_cols=325  Identities=22%  Similarity=0.262  Sum_probs=266.7

Q ss_pred             cceeeecccCccccceeeee-ccccccceeecCCCceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceee
Q 015253           79 QIELLNRCNGNWKRVLRFLQ-SVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTR  156 (410)
Q Consensus        79 ~g~l~~~~~~~~~~~~~~~~-~~~~~p~~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~  156 (410)
                      .|+||.||.+++++++.... .....|.+++.+.+|++|+||..|++|| ++|+||+||.|.+||||.+.... ...|.+
T Consensus        14 ~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~-~~~~~~   92 (401)
T d1a12a_          14 PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE-GSEMVP   92 (401)
T ss_dssp             CBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST-TGGGSC
T ss_pred             CCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccc-cccccc
Confidence            34444444444444442211 2345688888889999999999999999 99999999999999999987664 345667


Q ss_pred             ecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCc
Q 015253          157 INFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGH  236 (410)
Q Consensus       157 v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~  236 (410)
                      ..+....+|++|+||..|+++++++|+||+||.+..++++..........+..+....+.+|++|+||..|+++++++|+
T Consensus        93 ~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~  172 (401)
T d1a12a_          93 GKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD  172 (401)
T ss_dssp             EECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSC
T ss_pred             cccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccceeeeecCCc
Confidence            77777779999999999999999999999999987776665544333444445555566789999999999999999999


Q ss_pred             EEEeecCCCCccCCCCCCCC-----------CCceeecC----CCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCccc
Q 015253          237 VHTCGSNTHGQLGHGDTLDR-----------PTPKSIAP----LEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCL  301 (410)
Q Consensus       237 v~~wG~n~~gqlG~~~~~~~-----------~~p~~v~~----~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqL  301 (410)
                      +|+||.|.+||||.......           ..|..+..    .....+|++|+||.+|+++|+++|+||+||.|.++++
T Consensus       173 ~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~  252 (401)
T d1a12a_         173 LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQL  252 (401)
T ss_dssp             EEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTT
T ss_pred             ccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecc
Confidence            99999999999997654321           12333322    1222589999999999999999999999999999999


Q ss_pred             CCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCC-CCccccEEecCCCCCceeee
Q 015253          302 GHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE-IDKTLPEPLSSLKSHLAVQG  380 (410)
Q Consensus       302 G~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~-~~~~~P~~v~~~~~~~i~~~  380 (410)
                      |.........+..+..+......++.+++|..|+++++++|+||+||.|.+||||.++. .....|++|+.+.  +|++ 
T Consensus       253 g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~--~i~~-  329 (401)
T d1a12a_         253 GTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSS-  329 (401)
T ss_dssp             SCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEE-
T ss_pred             cccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCC--CeEE-
Confidence            99988888888888777666678999999999999999999999999999999999874 5566799998764  5888 


Q ss_pred             eeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253          381 LSVLAEVCPTIVQEDTRSCSDIICHDSTQ  409 (410)
Q Consensus       381 ~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ  409 (410)
                        |+||.+|++||+++|+||+||.|..||
T Consensus       330 --Is~G~~hs~alt~dG~v~~WG~n~~GQ  356 (401)
T d1a12a_         330 --VACGASVGYAVTKDGRVFAWGMGTNYQ  356 (401)
T ss_dssp             --EEECSSEEEEEETTSCEEEEECCTTST
T ss_pred             --EEeeCCEEEEEeCCCeEEEEecCCCCC
Confidence              999999999999999999999999998
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure