Citrus Sinensis ID: 015274

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MESHGSITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFFQSKISSMDLTSL
cccccccHHHHHHHHHHHHHHccccEEEEEEEcccEEEEcccccccEEEccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccEEEEEEEEcHHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEccccccccHHHHHHHHHHHccHHHHHHHccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccc
ccccccHHHHEEEEEEHHHHHccccccEEEEEccEEEEEccHHHHccHHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccEEEEEEEccccccEEccccccccccccccccEEEcEEEEEccHHHHHHHHHHcccEEEEEEEccHccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccEEEccEEEEEEccccccccHHHHHHccccccEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHccEEEccccccEEEEEEEEEEEEEEEcccccccccccEEEEEEEEcccccccHHHccccccccccc
MESHGSITLKLFLGFLILSLNVHTSVSRFVVEknslmvtspekikgshdsaignfgipqyggsmagavtypkenrkgcrefgdfgisfkakpgalpnfvlvdrGDCFFALKVWNAQKAGASAVLVADDIEEALitmdtpeedissakyienitipsalidKSFGETLKKALsggemvnvnldwreavphpddrveyelwtnsndecgvKCDMLMAFVKEfrgpaqilekggytqftphyitwycpmtftlsrqCKSQcinhgrycapdpeqdfssgyegkdvVLENLRQLCVFKVAkeskkpwvwwdYVTDfqircpmkdkkynKECAAAVIKSLGLDAKKIENLTWILrseplwhnicLWTVNLKFQITstmnvhdqgkSSIFVTIsidtdwspsffqskissmdltsl
MESHGSITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITmdtpeedissaKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKvakeskkpwvwwdYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTdwspsffqskissmdltsl
MESHGSITlklflgflilslNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFFQSKISSMDLTSL
******ITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVT**********SAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFF************
*********KLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFFQSKISSM*LTS*
MESHGSITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFFQSKI********
*****SITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFF************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESHGSITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFFQSKISSMDLTSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query410 2.2.26 [Sep-21-2011]
P93484 623 Vacuolar-sorting receptor N/A no 0.795 0.523 0.828 1e-166
O80977 628 Vacuolar-sorting receptor yes no 0.773 0.504 0.845 1e-166
Q56ZQ3 628 Vacuolar-sorting receptor yes no 0.773 0.504 0.842 1e-166
P93026 623 Vacuolar-sorting receptor no no 0.817 0.537 0.685 1e-138
O22925 625 Vacuolar-sorting receptor no no 0.780 0.512 0.668 1e-137
Q8L7E3 625 Vacuolar-sorting receptor no no 0.817 0.536 0.598 1e-121
Q9FYH7 631 Vacuolar-sorting receptor no no 0.812 0.527 0.591 1e-120
O64758 618 Vacuolar-sorting receptor no no 0.812 0.538 0.551 1e-109
Q66HG0380 E3 ubiquitin-protein liga yes no 0.187 0.202 0.364 0.0002
O54965381 E3 ubiquitin-protein liga yes no 0.187 0.202 0.376 0.0003
>sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1 Back     alignment and function desciption
 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/333 (82%), Positives = 303/333 (90%), Gaps = 7/333 (2%)

Query: 11  LFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTY 70
           LFLGF++ SL    S +RFVVEKNSL VTSPEKIKG HDSAIGNFGIPQYGGSMAG V Y
Sbjct: 10  LFLGFMLTSL----STARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVY 65

Query: 71  PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIE 130
           PK+N KGC+   DF  SFK++PGALP  +L+DRG CFFALKVWNAQKAGASAVLVADDIE
Sbjct: 66  PKDNSKGCK---DFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIE 122

Query: 131 EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHP 190
           E LITMDTPEED+SSAKYIENITIPSALI KSFGE LK A+SGG+MVNVNLDWREAVPHP
Sbjct: 123 EPLITMDTPEEDVSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHP 182

Query: 191 DDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTL 250
           DDRVEYELWTNSNDECGVKCDML+ F+K+F+G AQILEKGGYTQFTPHYITWYCP  FTL
Sbjct: 183 DDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTL 242

Query: 251 SRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVT 310
           S+QCKSQCINHGRYCAPDPEQDF++GY+GKDVV+ENLRQLCVFKVAKE++K WVWWDYVT
Sbjct: 243 SKQCKSQCINHGRYCAPDPEQDFNTGYDGKDVVVENLRQLCVFKVAKETEKSWVWWDYVT 302

Query: 311 DFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIE 343
           DFQIRCPMK+KKYNKECA +VIKSLGLD +KI+
Sbjct: 303 DFQIRCPMKEKKYNKECANSVIKSLGLDVEKID 335
Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. Seems to binds preferentially proteins containing a N-terminal NPIR motif.
Pisum sativum (taxid: 3888)
>sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1 Back     alignment and function description
>sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2 Back     alignment and function description
>sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2 Back     alignment and function description
>sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1 Back     alignment and function description
>sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2 Back     alignment and function description
>sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3 Back     alignment and function description
>sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1 Back     alignment and function description
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1 Back     alignment and function description
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
224056244 630 predicted protein [Populus trichocarpa] 0.819 0.533 0.869 1e-176
224105715 630 predicted protein [Populus trichocarpa] 0.792 0.515 0.886 1e-173
255573159 633 zinc finger protein, putative [Ricinus c 0.836 0.541 0.833 1e-173
356536097 631 PREDICTED: vacuolar-sorting receptor 1-l 0.819 0.532 0.836 1e-170
356536101 621 PREDICTED: vacuolar-sorting receptor 1-l 0.819 0.541 0.836 1e-170
356575734 631 PREDICTED: vacuolar-sorting receptor 1-l 0.819 0.532 0.833 1e-170
356575738 621 PREDICTED: vacuolar-sorting receptor 1-l 0.819 0.541 0.833 1e-169
356536099 636 PREDICTED: vacuolar-sorting receptor 1-l 0.819 0.528 0.818 1e-167
356575736 636 PREDICTED: vacuolar-sorting receptor 1-l 0.819 0.528 0.815 1e-167
71153401 623 RecName: Full=Vacuolar-sorting receptor 0.795 0.523 0.828 1e-164
>gi|224056244|ref|XP_002298772.1| predicted protein [Populus trichocarpa] gi|222846030|gb|EEE83577.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/336 (86%), Positives = 314/336 (93%)

Query: 8   TLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGA 67
           +L LFLGFL++SL    S++RFVVEKNSL VTSP+KIKG++DSAIGNFGIPQYGGSMAGA
Sbjct: 7   SLNLFLGFLVISLIAPRSIARFVVEKNSLRVTSPDKIKGTYDSAIGNFGIPQYGGSMAGA 66

Query: 68  VTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVAD 127
           V YPK+N+KGC+EF  FGISF++KPGALP FVLVDRGDCFFALKVWNAQKAGASAVLVAD
Sbjct: 67  VVYPKDNKKGCKEFDGFGISFQSKPGALPTFVLVDRGDCFFALKVWNAQKAGASAVLVAD 126

Query: 128 DIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAV 187
           D+EE LITMDTP ED SSA+YIENITIPSALI+KSF ETLKKALS G+MVNVNLDWREAV
Sbjct: 127 DMEEPLITMDTPAEDASSAQYIENITIPSALIEKSFSETLKKALSNGDMVNVNLDWREAV 186

Query: 188 PHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMT 247
           PHPDDRVEYELWTNSNDECGVKCDMLM FVK+FRG AQILEKGGYTQFTPHYITWYCP  
Sbjct: 187 PHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFRGAAQILEKGGYTQFTPHYITWYCPQA 246

Query: 248 FTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWD 307
           FTLSRQCKSQCINHGRYCAPDPEQDFSSGY+GKDVVLENLRQLCVFKVA E+KKPWVWWD
Sbjct: 247 FTLSRQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVLENLRQLCVFKVANETKKPWVWWD 306

Query: 308 YVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIE 343
           YVTDFQIRCPMK+KKYNKECA AVIKSLGLD KKI+
Sbjct: 307 YVTDFQIRCPMKEKKYNKECADAVIKSLGLDGKKID 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105715|ref|XP_002313909.1| predicted protein [Populus trichocarpa] gi|222850317|gb|EEE87864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573159|ref|XP_002527509.1| zinc finger protein, putative [Ricinus communis] gi|223533149|gb|EEF34907.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356536097|ref|XP_003536576.1| PREDICTED: vacuolar-sorting receptor 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356536101|ref|XP_003536578.1| PREDICTED: vacuolar-sorting receptor 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356575734|ref|XP_003555992.1| PREDICTED: vacuolar-sorting receptor 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356575738|ref|XP_003555994.1| PREDICTED: vacuolar-sorting receptor 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356536099|ref|XP_003536577.1| PREDICTED: vacuolar-sorting receptor 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356575736|ref|XP_003555993.1| PREDICTED: vacuolar-sorting receptor 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|71153401|sp|P93484.1|VSR1_PEA RecName: Full=Vacuolar-sorting receptor 1; AltName: Full=80 kDa proaleurein-binding protein; AltName: Full=BP-80; Flags: Precursor gi|1737222|gb|AAB72110.1| BP-80 vacuolar sorting receptor [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
TAIR|locus:2046911 628 VSR3 "vaculolar sorting recept 0.773 0.504 0.845 4e-154
TAIR|locus:2046931 628 VSR4 "vacuolar sorting recepto 0.773 0.504 0.842 8.2e-154
TAIR|locus:2085136 623 VSR1 "vacuolar sorting recepto 0.785 0.516 0.698 6.9e-134
TAIR|locus:2015726 631 VSR6 "VACUOLAR SORTING RECEPTO 0.760 0.494 0.610 2.3e-110
TAIR|locus:2044782 618 VSR5 "VACUOLAR SORTING RECEPTO 0.758 0.503 0.577 5.4e-102
TIGR_CMR|SO_3800 1215 SO_3800 "serine protease, subt 0.224 0.075 0.339 3.1e-05
UNIPROTKB|Q7NC92 1054 glr3087 "Glr3087 protein" [Glo 0.212 0.082 0.364 0.00019
TAIR|locus:2046911 VSR3 "vaculolar sorting receptor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 268/317 (84%), Positives = 296/317 (93%)

Query:    27 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGI 86
             +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF I
Sbjct:    24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSI 83

Query:    87 SFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSA 146
             SFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSA
Sbjct:    84 SFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSA 143

Query:   147 KYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDEC 206
             KYIENITIPSAL+ K FGE LKKA+SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDEC
Sbjct:   144 KYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDEC 203

Query:   207 GVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCA 266
             GVKCDMLM FVK+F+G AQILEKGG+TQF PHYITWYCP  FTLSRQCKSQCIN GRYCA
Sbjct:   204 GVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWYCPHAFTLSRQCKSQCINKGRYCA 263

Query:   267 PDPEQDFSSGYEGKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKE 326
             PDPEQDFSSGY+GKDVV+ENLRQLCV+KVA E+ KPWVWWDYVTDFQIRCPMK+KKYNKE
Sbjct:   264 PDPEQDFSSGYDGKDVVVENLRQLCVYKVANETGKPWVWWDYVTDFQIRCPMKEKKYNKE 323

Query:   327 CAAAVIKSLGLDAKKIE 343
             CA +VIKSLG+D+KK++
Sbjct:   324 CADSVIKSLGIDSKKLD 340
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=ISS;IMP;TAS
GO:0006886 "intracellular protein transport" evidence=ISS
GO:0017119 "Golgi transport complex" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2046931 VSR4 "vacuolar sorting receptor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085136 VSR1 "vacuolar sorting receptor homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015726 VSR6 "VACUOLAR SORTING RECEPTOR 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044782 VSR5 "VACUOLAR SORTING RECEPTOR 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3800 SO_3800 "serine protease, subtilase family" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q7NC92 glr3087 "Glr3087 protein" [Gloeobacter violaceus PCC 7421 (taxid:251221)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56ZQ3VSR4_ARATHNo assigned EC number0.84220.77310.5047yesno
O80977VSR3_ARATHNo assigned EC number0.84540.77310.5047yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 6e-73
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 2e-18
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 2e-17
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 6e-17
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 4e-13
pfam0222596 pfam02225, PA, PA domain 2e-11
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 4e-11
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 8e-09
cd02130122 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as 3e-08
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 6e-08
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 6e-06
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 1e-05
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 6e-05
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 0.001
cd02124129 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso 0.001
cd02128183 cd02128, PA_TfR, PA_TfR: Protease-associated domai 0.003
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
 Score =  223 bits (571), Expect = 6e-73
 Identities = 83/128 (64%), Positives = 100/128 (78%), Gaps = 1/128 (0%)

Query: 54  NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVW 113
           NFG+PQYGG++ G V YPKENR GC+EF  F    K++PG  P  +L+DRG CFF LK W
Sbjct: 1   NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW 60

Query: 114 NAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173
           NAQ+AGA+AVLVAD+++E L+TMDTPEE   SA YIE ITIPSALI K+FGE LKKA+S 
Sbjct: 61  NAQQAGAAAVLVADNVDEPLLTMDTPEES-GSADYIEKITIPSALITKAFGEKLKKAISN 119

Query: 174 GEMVNVNL 181
           GEMV + L
Sbjct: 120 GEMVVIKL 127

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>gnl|CDD|239043 cd02128, PA_TfR, PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.96
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.89
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.88
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.88
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.87
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.86
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.81
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.77
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.77
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.76
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.73
KOG3920193 consensus Uncharacterized conserved protein, conta 99.7
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.67
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.66
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.65
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.52
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.5
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.45
KOG2442 541 consensus Uncharacterized conserved protein, conta 99.43
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.39
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.25
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.1
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 99.03
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.61
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.41
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.37
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 98.3
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.21
KOG2195 702 consensus Transferrin receptor and related protein 95.54
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 92.86
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
Probab=99.96  E-value=1.4e-28  Score=215.35  Aligned_cols=127  Identities=65%  Similarity=1.100  Sum_probs=107.2

Q ss_pred             CCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 015274           54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL  133 (410)
Q Consensus        54 nFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l  133 (410)
                      |||.|+||++++|.|+|++++.+||+++.....+.+.+|..+++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus         1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~   80 (127)
T cd02125           1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL   80 (127)
T ss_pred             CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence            79999999999999999988999999997632122223567789999999999999999999999999999999988877


Q ss_pred             eecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274          134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL  181 (410)
Q Consensus       134 ~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l  181 (410)
                      ++|..++++. ..++..+++||+++|++++|+.|++.+++|..|+++|
T Consensus        81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~  127 (127)
T cd02125          81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL  127 (127)
T ss_pred             ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence            8887654321 1134567899999999999999999999999998874

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 1e-21
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 8e-07
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 90.6 bits (224), Expect = 1e-21
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 46  GSHDSAIGNFGIPQYGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFV-LVD 102
               S  G +G       +AG +  P        C    +F +          +++ L+ 
Sbjct: 52  VWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQ 111

Query: 103 RGD-CFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDK 161
           RG  C FA K+  A + GAS  ++ +        +           +   + I + +I  
Sbjct: 112 RGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVI--------PMSHPGAVDIVAIMIGN 163

Query: 162 SFGETLKKALSGGEMVNVNLD 182
             G  + +++  G  V + ++
Sbjct: 164 LKGTKILQSIQRGIQVTMVIE 184
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.91
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.25
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.18
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.99
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.87
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.04
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 97.76
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 97.69
3gha_A202 Disulfide bond formation protein D; BDBD, DSBA-lik 91.44
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 90.86
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 88.18
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=1e-23  Score=195.38  Aligned_cols=145  Identities=21%  Similarity=0.289  Sum_probs=114.0

Q ss_pred             EEecCeEEEEc--CCC---cccceeccccCCCCCCCCCceEEEEEccC--CCcCCCCCCCCCCcccc-CCCCCCCcEEEE
Q 015274           30 VVEKNSLMVTS--PEK---IKGSHDSAIGNFGIPQYGGSMAGAVTYPK--ENRKGCREFGDFGISFK-AKPGALPNFVLV  101 (410)
Q Consensus        30 vve~~~l~V~~--P~~---l~~~y~~~~AnFG~p~yg~~l~G~lv~~~--~~~~GC~~~~~~~~~~~-~~p~~~~~IvLV  101 (410)
                      ...+..+.|..  |..   ....+....|+||.+.+.++++|.|+++.  ++.+||++.+++..... ..+...++||||
T Consensus        31 ~~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV  110 (194)
T 3icu_A           31 AVWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALI  110 (194)
T ss_dssp             CEEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEE
T ss_pred             eEEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEE
Confidence            34556666655  332   22357789999999999999999999986  47899999876431111 011245899999


Q ss_pred             ecCC-CCHHHHHHHHHHcCCcEEEEEeCCC--CcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEE
Q 015274          102 DRGD-CFFALKVWNAQKAGASAVLVADDIE--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVN  178 (410)
Q Consensus       102 ~RG~-CsF~~Kv~nAQ~aGA~aVIV~dn~~--e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~  178 (410)
                      +||+ |+|.+|++|||++||+||||||+..  +.+.+|..++          ..+||++||++++|+.|+++|++|.+|+
T Consensus       111 ~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vt  180 (194)
T 3icu_A          111 QRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVT  180 (194)
T ss_dssp             ESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEE
T ss_pred             ECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEE
Confidence            9999 9999999999999999999999852  3456886432          2579999999999999999999999999


Q ss_pred             EEEEec
Q 015274          179 VNLDWR  184 (410)
Q Consensus       179 v~l~~~  184 (410)
                      ++|...
T Consensus       181 vti~vg  186 (194)
T 3icu_A          181 MVIEVG  186 (194)
T ss_dssp             EEEEEE
T ss_pred             EEEECC
Confidence            998873
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Back     alignment and structure
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 410
d1de4c2193 c.8.4.1 (C:190-382) Transferrin receptor ectodomai 3e-04
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 63  SMAGAVTYPKENRKGCRE--FGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGA 120
           S A  VT    +     +  F D               V+V  G   FA KV NA+   A
Sbjct: 34  SKAATVTGKLVHANFGTKKDFEDLYTPVNGS------IVIVRAGKITFAEKVANAESLNA 87

Query: 121 SAVLVADD 128
             VL+  D
Sbjct: 88  IGVLIYMD 95

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.98
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.68
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4.5e-10  Score=101.43  Aligned_cols=103  Identities=20%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             CCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc--------
Q 015274           61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA--------  132 (410)
Q Consensus        61 g~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~--------  132 (410)
                      .|+++|.|||+.   . |...++.  .+.  -+..++|||++||.|+|.+|++|||++||+|||||.|..+.        
T Consensus        36 ~G~v~g~lVy~n---~-G~~~Df~--~L~--~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~  107 (193)
T d1de4c2          36 AATVTGKLVHAN---F-GTKKDFE--DLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELS  107 (193)
T ss_dssp             CEEEEECEEECS---T-TCHHHHH--TCS--SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCC
T ss_pred             CCceeEEEEEcc---C-CCHHHHH--Hhc--cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccc
Confidence            478999999962   2 2222111  111  23459999999999999999999999999999999864321        


Q ss_pred             c---eec--CCCcccc---c-------cccccCCcceeEEEecHHHHHHHHHHHh
Q 015274          133 L---ITM--DTPEEDI---S-------SAKYIENITIPSALIDKSFGETLKKALS  172 (410)
Q Consensus       133 l---~tM--~~p~~~~---~-------~~~~~~~i~IPsvlIsk~dG~~L~~~L~  172 (410)
                      .   ..+  ++|. ++   +       ......-.+||+.-|+.+|++.|++.|.
T Consensus       108 ~~g~~~~~~GDPl-TPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         108 FFGHAHLGTGDPY-TPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CCEECCSSSSCTT-STTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             cccccccCCCCCC-CCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            0   111  1111 00   0       0111234589999999999999999995
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure