Citrus Sinensis ID: 015275

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVFFQGERYSESVKT

ccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHcccccccEEcEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccccccccccEEEEcccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccEEEEEEccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccEccEEcccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccEccccEEccccccccHcccccccccccccccEEEEEccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccEEcc

mdtecwgdevSKKVLWQYKslpkkgkpqgrEVTVLAAFLISSPSKDLEVVALGTGtkcigrsllsphgdivndSHAEIVARRALLRFFYTEVLNKqkcsngieglrdDVFNNflfelgptgkyrfregWQLHLYISqlpcgdaslsschsaprnffsregnslssvdelngfkdgIYDSLQHIgrvqrkpgrgdttlsvsCSDKIARWNAVGVQGALLSYFLQpvylssitvgrspntsedfpleehlKRSLYdrilplseelsspfqvnkpiflaasvppeefqhsetasstltcgysicwnksglheVILGttgrkqgtsakgalspstqsslcKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASkvfkggppfnnwplkplgyevffqgerysesvkt

mdtecwgdevskkVLWQYkslpkkgkpqgrEVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHigrvqrkpgrgdttLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKgalspstqsslCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVFFQGERYSESVKT

****CWGDEVSKKVLWQYKSL********REVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSC********************LNGFKDGIYDSLQHIGRVQ******DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVG****************RSLYDRILPL*******FQVNKPIFLAA**************STLTCGYSICWNKSGLHEVILGTT*******************LCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVFFQG*********

****CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQ**********************PTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPR************************DSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAAS********************SICWNKSGLHEVILGTTGRKQGT************SLCKNRLLQVFLSLKHES***CLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVFF***********

********EVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVP************TLTCGYSICWNKSGLHEVILGTTG*****************SLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVFFQGE********

MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSN**********NNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSS***********************GFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPE*F*H*****STLTCGYSICWNKSGLHEVILGTT***************TQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVFFQG*********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		410	2.2.26 [Sep-21-2011]
Q9V3R6		394	tRNA-specific adenosine d	yes	no	0.863	0.898	0.328	4e-36
P51400		711	Double-stranded RNA-speci	yes	no	0.826	0.476	0.296	2e-33
Q91ZS8		711	Double-stranded RNA-speci	yes	no	0.826	0.476	0.294	5e-33
Q9NS39		739	Double-stranded RNA-speci	no	no	0.865	0.480	0.306	2e-32
P78563		741	Double-stranded RNA-speci	no	no	0.819	0.453	0.295	5e-32
P55265		1226	Double-stranded RNA-speci	no	no	0.778	0.260	0.296	1e-30
Q99MU3		1178	Double-stranded RNA-speci	no	no	0.778	0.270	0.291	3e-30
P55266		1175	Double-stranded RNA-speci	no	no	0.778	0.271	0.291	9e-30
Q9JI20		745	Double-stranded RNA-speci	no	no	0.868	0.477	0.292	5e-29
P97616		746	Double-stranded RNA-speci	no	no	0.875	0.481	0.294	5e-28

>sp\|Q9V3R6\|ADAT1_DROME tRNA-specific adenosine deaminase 1 OS=Drosophila melanogaster GN=adat PE=2 SV=1	Back alignment and function desciption

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 132/402 (32%), Positives = 193/402 (48%), Gaps = 48/402 (11%)

Query: 9   EVSKKVLWQYKSLPKKGKPQGREVTVLAAFL-ISSPSKDLEVVALGTGTKCIGRSLLSPH 67
           E+++  L +++SLPK GKP   + T+LA  +  +  ++  ++V+LG GTKCIG S L P+
Sbjct: 11  EIAELCLKKFESLPKTGKPTANQWTILAGIVEFNRNTEACQLVSLGCGTKCIGESKLCPN 70

Query: 68  GDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVF--NNFLFELGPTGKYRF 125
           G I+NDSHAE++ARR  LRF Y E+  KQ          D +F  N+ L        Y  
Sbjct: 71  GLILNDSHAEVLARRGFLRFLYQEL--KQ----------DRIFHWNSTL------STYDM 112

Query: 126 REGWQLHLYISQLPCGDAS-LSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDS--LQH 182
            E  + H   +Q PCGDA  L     A R    R       V         + D   LQ 
Sbjct: 113 DEHVEFHFLSTQTPCGDACILEEEQPAARAKRQRLDEDSEMVYTGAKLISDLSDDPMLQT 172

Query: 183 IGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFL-QPVYLSSITVGRSPNTSED 241
            G ++ KPGRG+ TLS+SCSDKIARWN +GVQGALL   + +P+Y SS+      N   D
Sbjct: 173 PGALRTKPGRGERTLSMSCSDKIARWNVIGVQGALLDVLISKPIYFSSL------NFCCD 226

Query: 242 FPLEEHLKRSLYDRILPLSEELSSPFQVNKP-IFLAASVPPEEFQHSETASSTLTCGYSI 300
               E L+R+++ R    + +  + FQ  +P I +   +  E  Q S+   S       +
Sbjct: 227 DAQLESLERAIFKRFDCRTFK-HTRFQPQRPQINIDPGIRFEFSQRSDWQPSP----NGL 281

Query: 301 CWNK--SGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSL-KHESKIRCL- 356
            W++    L    +   G++QG + K   +     ++ K +L   FL L K   K+  + 
Sbjct: 282 IWSQVPEELRPYEISVNGKRQGVTKKKMKTSQAALAISKYKLFLTFLELVKFNPKLSEMF 341

Query: 357 ------AADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKP 392
                    I+Y   KD A+ Y  A +  K    F  W  KP
Sbjct: 342 DQQLSDPERIAYASCKDLARDYQFAWREIKEK-YFLQWTKKP 382

Specifically deaminates adenosine-37 to inosine in tRNA-Ala.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: -

>sp\|P51400\|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus GN=Adarb1 PE=1 SV=1	Back alignment and function description

>sp\|Q91ZS8\|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1 PE=1 SV=1	Back alignment and function description

>sp\|Q9NS39\|RED2_HUMAN Double-stranded RNA-specific editase B2 OS=Homo sapiens GN=ADARB2 PE=1 SV=1	Back alignment and function description

>sp\|P78563\|RED1_HUMAN Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1 PE=1 SV=1	Back alignment and function description

>sp\|P55265\|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4	Back alignment and function description

>sp\|Q99MU3\|DSRAD_MOUSE Double-stranded RNA-specific adenosine deaminase OS=Mus musculus GN=Adar PE=1 SV=2	Back alignment and function description

>sp\|P55266\|DSRAD_RAT Double-stranded RNA-specific adenosine deaminase OS=Rattus norvegicus GN=Adar PE=2 SV=1	Back alignment and function description

>sp\|Q9JI20\|RED2_MOUSE Double-stranded RNA-specific editase B2 OS=Mus musculus GN=Adarb2 PE=2 SV=2	Back alignment and function description

>sp\|P97616\|RED2_RAT Double-stranded RNA-specific editase B2 OS=Rattus norvegicus GN=Adarb2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		410
225454148		453	PREDICTED: tRNA-specific adenosine deami	0.970	0.878	0.636	1e-147
224127616		380	predicted protein [Populus trichocarpa]	0.885	0.955	0.669	1e-140
255541540		443	protein with unknown function [Ricinus c	0.970	0.898	0.623	1e-137
357497385		413	Double-stranded RNA-specific adenosine d	0.934	0.927	0.608	1e-132
356506269		407	PREDICTED: tRNA-specific adenosine deami	0.931	0.938	0.629	1e-131
449441482		406	PREDICTED: tRNA-specific adenosine deami	0.936	0.945	0.609	1e-130
356522634		384	PREDICTED: tRNA-specific adenosine deami	0.904	0.966	0.623	1e-125
186478036		420	Adenosine-deaminase (editase) domain-con	0.963	0.940	0.587	1e-124
297842944		399	predicted protein [Arabidopsis lyrata su	0.885	0.909	0.582	1e-114
8671846		435	Contains similarity to RNA adenosine dea	0.929	0.875	0.534	1e-109

>gi\|225454148\|ref\|XP_002273023.1\| PREDICTED: tRNA-specific adenosine deaminase 1 [Vitis vinifera] gi\|297745247\|emb\|CBI40327.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/435 (63%), Positives = 321/435 (73%), Gaps = 37/435 (8%)

Query: 1   MDTE-CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCI 59
           +D+E  WG++VS+KVL  YKSLPKKGKPQGREVTVLAAFL SSPS+DLEVVALGTGTKCI
Sbjct: 15  LDSEKTWGEQVSEKVLSVYKSLPKKGKPQGREVTVLAAFLTSSPSQDLEVVALGTGTKCI 74

Query: 60  GRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSN------GIEGLRDDVFNNF 113
           GRS LSPHGDIVNDSHAE++ARRAL+RFFYTE+ +    SN      G E L  D   N 
Sbjct: 75  GRSRLSPHGDIVNDSHAEVIARRALMRFFYTEIQSLLTISNRHTHNYGSEQLEGDDITNM 134

Query: 114 LFELGPTG----KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-------------- 155
           LF L   G    K   R GW+LHLYISQLPCGDASLS    + R+F              
Sbjct: 135 LFHLDSDGPGQRKITMRAGWKLHLYISQLPCGDASLSLPLFSLRSFALINGDLPSSVSEN 194

Query: 156 --FSREGNSLSSVDELNG-FKDGIY---------DSLQHIGRVQRKPGRGDTTLSVSCSD 203
                + +SLS++D+  G F D            +  Q IG +QRKPGRGDTTLSVSCSD
Sbjct: 195 DSMDEQTDSLSNLDDFTGDFLDASMKNNVGSFSGNGSQIIGMIQRKPGRGDTTLSVSCSD 254

Query: 204 KIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEEL 263
           KIARWN +GVQGALLSYFLQPVYLSSITVG S  + + FPLE++L+R+LY+R LPLS++L
Sbjct: 255 KIARWNVLGVQGALLSYFLQPVYLSSITVGESHTSPKIFPLEDNLRRALYNRALPLSDKL 314

Query: 264 SSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSA 323
            SPFQVN+P+F  A +PP+EFQHSETA++TLTCGYSICWNKSGLHEVILGTTGRKQGTSA
Sbjct: 315 KSPFQVNQPLFWKAPIPPKEFQHSETATTTLTCGYSICWNKSGLHEVILGTTGRKQGTSA 374

Query: 324 KGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKGGP 383
           KGAL  ST+ SLCK RLL+VFL L H++ I   A ++SYRELKDGAQ Y  ASK+FKG P
Sbjct: 375 KGALYASTEPSLCKKRLLEVFLLLMHKTSIESPANEVSYRELKDGAQEYCSASKIFKGSP 434

Query: 384 PFNNWPLKPLGYEVF 398
           PFN W LK L  E F
Sbjct: 435 PFNGWLLKALNLEAF 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224127616\|ref\|XP_002320118.1\| predicted protein [Populus trichocarpa] gi\|222860891\|gb\|EEE98433.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255541540\|ref\|XP_002511834.1\| protein with unknown function [Ricinus communis] gi\|223549014\|gb\|EEF50503.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|357497385\|ref\|XP_003618981.1\| Double-stranded RNA-specific adenosine deaminase [Medicago truncatula] gi\|355493996\|gb\|AES75199.1\| Double-stranded RNA-specific adenosine deaminase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356506269\|ref\|XP_003521909.1\| PREDICTED: tRNA-specific adenosine deaminase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449441482\|ref\|XP_004138511.1\| PREDICTED: tRNA-specific adenosine deaminase 1-like [Cucumis sativus] gi\|449518611\|ref\|XP_004166330.1\| PREDICTED: tRNA-specific adenosine deaminase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356522634\|ref\|XP_003529951.1\| PREDICTED: tRNA-specific adenosine deaminase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|186478036\|ref\|NP_171681.3\| Adenosine-deaminase (editase) domain-containing protein [Arabidopsis thaliana] gi\|332189211\|gb\|AEE27332.1\| Adenosine-deaminase (editase) domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297842944\|ref\|XP_002889353.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297335195\|gb\|EFH65612.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|8671846\|gb\|AAF78409.1\|AC009273_15 Contains similarity to RNA adenosine deaminase gene, exon 15 from Homo sapiens gb\|U75503. It contains the adenosine-deaminase (editase) domain PF\|02137 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		410
TAIR\|locus:2198185		420	TAD1 "ortholog of yeast Tad1"	0.673	0.657	0.593	9.2e-124
ZFIN\|ZDB-GENE-070410-64		466	adat1 "adenosine deaminase, tR	0.317	0.278	0.435	3.4e-42
RGD\|1591020		498	Adat1 "adenosine deaminase, tR	0.509	0.419	0.308	1.6e-38
UNIPROTKB\|Q28FE8		472	adat1 "tRNA-specific adenosine	0.507	0.440	0.330	5.2e-38
DICTYBASE\|DDB_G0278943		545	DDB_G0278943 "adenosine deamin	0.343	0.258	0.385	1.1e-37
MGI\|MGI:1353631		499	Adat1 "adenosine deaminase, tR	0.504	0.414	0.318	3.4e-36
UNIPROTKB\|Q5ZI16		503	ADAT1 "tRNA-specific adenosine	0.380	0.310	0.385	2.2e-35
UNIPROTKB\|F1S456		497	ADAT1 "Uncharacterized protein	0.504	0.416	0.321	1.1e-34
UNIPROTKB\|F1N0T4		721	ADARB1 "Uncharacterized protei	0.695	0.395	0.353	1.2e-34
ZFIN\|ZDB-GENE-000627-2		720	adarb1a "adenosine deaminase,	0.697	0.397	0.329	5.2e-34

TAIR\|locus:2198185 TAD1 "ortholog of yeast Tad1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 811 (290.5 bits), Expect = 9.2e-124, Sum P(2) = 9.2e-124
 Identities = 172/290 (59%), Positives = 205/290 (70%)

Query:   122 KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSRE-GNSL------------SSVDE 168
             KY+ + G  LHLYISQLPCG AS SS   A +   S +  +SL            S V E
Sbjct:   129 KYKLKSGCLLHLYISQLPCGYASTSSPLYALKKIPSTQVDDSLLVQASDICSSRHSDVPE 188

Query:   169 LNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLS 228
             + G      +  Q    VQRKPGRG+TTLSVSCSDKIARWN +GVQGALL   LQPVY+S
Sbjct:   189 I-GSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYIS 247

Query:   229 SITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSE 288
             +ITVG+S ++ ++F L +HL+RSLY+RILPLS+EL + F++NKP+F  A VPP EFQHSE
Sbjct:   248 TITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSE 307

Query:   289 TASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLK 348
             TA +TLTCGYS+CWN SGLHEVILGTTGRKQGTSAKGAL PSTQSS+CK RLL++FL   
Sbjct:   308 TAQATLTCGYSLCWNYSGLHEVILGTTGRKQGTSAKGALYPSTQSSICKQRLLELFLKET 367

Query:   349 HESKIRCLAADISYRELKDGAQAYNIASKVFKGGPPFNNWPLKPLGYEVF 398
             H  K     +  SYRELK+ A  Y + SK+FKG  PFNNW  KPL  E F
Sbjct:   368 HGHKRESSKSKKSYRELKNKATEYYLMSKIFKGKYPFNNWLRKPLNCEDF 417

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0004000 "adenosine deaminase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

ZFIN\|ZDB-GENE-070410-64 adat1 "adenosine deaminase, tRNA-specific 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1591020 Adat1 "adenosine deaminase, tRNA-specific 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28FE8 adat1 "tRNA-specific adenosine deaminase 1" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0278943 DDB_G0278943 "adenosine deaminase acting on tRNA 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1353631 Adat1 "adenosine deaminase, tRNA-specific 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZI16 ADAT1 "tRNA-specific adenosine deaminase 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S456 ADAT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N0T4 ADARB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-000627-2 adarb1a "adenosine deaminase, RNA-specific, B1a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V3R6	ADAT1_DROME	3, ., 5, ., 4, ., -	0.3283	0.8634	0.8984	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		410
pfam02137		329	pfam02137, A_deamin, Adenosine-deaminase (editase)	1e-103
smart00552		374	smart00552, ADEAMc, tRNA-specific and double-stran	1e-99

>gnl\|CDD\|216895 pfam02137, A_deamin, Adenosine-deaminase (editase) domain	Back alignment and domain information

 Score =  309 bits (793), Expect = e-103
 Identities = 134/354 (37%), Positives = 174/354 (49%), Gaps = 37/354 (10%)

Query: 51  ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVF 110
           +LGTGTKC+G   LS  GDI++D HAEI+ARR  LRF Y ++L         EG    +F
Sbjct: 1   SLGTGTKCLGGEHLSNDGDILHDCHAEILARRGFLRFLYEQLLLLNS-----EGKESSIF 55

Query: 111 NNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSA-------PRNFFSREGNSL 163
                     GK+R + G  LHLYIS  PCGDAS+ S           P +  +R+    
Sbjct: 56  E----RGIEEGKFRLKPGVSLHLYISTAPCGDASIFSPAEGLLDSELEPDSHPNRQARGQ 111

Query: 164 SSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYF 221
                  G   G        G V+ KPGR  G+ TLS+SCSDK+ARWN +GVQGALLS+F
Sbjct: 112 LRTKIERG--RGTIPVKGSDGVVRTKPGRLDGERTLSMSCSDKLARWNVLGVQGALLSHF 169

Query: 222 LQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPP 281
           ++P+YLSSI +G   ++      +EHL+R+   R+  L   L  PF VN P F  +S   
Sbjct: 170 IEPIYLSSIVLGSLNHS------QEHLERAFCGRLEGLLSSLPLPFLVNHPEFSLSS--- 220

Query: 282 EEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLL 341
                 ET   T     S+ W+     EV+    GRK GT+ K  LS    S LCK  L 
Sbjct: 221 ----KDETRQKTKPSPLSLNWSLGDDIEVLDALNGRKNGTTPKP-LSKGGPSRLCKAALF 275

Query: 342 QVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG--GPPFNNWPLKPL 393
             F  L  + K + +    +Y E K+ A  Y  A K  K         W  KPL
Sbjct: 276 ARFKKLLKKLK-KEVLLAKTYAEAKEAASEYQEAKKQLKSALEAGLGGWISKPL 328

Adenosine deaminases acting on RNA (ADARs) can deaminate adenosine to form inosine. In long double-stranded RNA, this process is non-specific; it occurs site-specifically in RNA transcripts. The former is important in defence against viruses, whereas the latter may affect splicing or untranslated regions. They are primarily nuclear proteins, but a longer isoform of ADAR1 is found predominantly in the cytoplasm. ADARs are derived from the Tad1-like tRNA deaminases that are present across eukaryotes. These in turn belong to the nucleotide/nucleic acid deaminase superfamily and are characterized by a distinct insert between the two conserved cysteines that are involved in binding zinc. Length = 329

>gnl\|CDD\|214718 smart00552, ADEAMc, tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		410
smart00552		374	ADEAMc tRNA-specific and double-stranded RNA adeno	100.0
KOG2777		542	consensus tRNA-specific adenosine deaminase 1 [RNA	100.0
PF02137		343	A_deamin: Adenosine-deaminase (editase) domain; In	100.0
COG0590		152	CumB Cytosine/adenosine deaminases [Nucleotide tra	83.21

>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)	Back alignment and domain information

Probab=100.00  E-value=1.2e-97  Score=750.10  Aligned_cols=358  Identities=41%  Similarity=0.654  Sum_probs=290.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHH
Q 015275            5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA   83 (410)
Q Consensus         5 ~lad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~~~-~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~   83 (410)
                      .|||+||++|+++|++||++|||..+||||||||||+.+. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus         1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~   80 (374)
T smart00552        1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG   80 (374)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence            4799999999999999999999999999999999999873 379999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCC-CceEeeCCcEEEEEeccCCCCccccccccCCCCCCCCC----
Q 015275           84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSR----  158 (410)
Q Consensus        84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~~~~~----  158 (410)
                      |+||||+||+.+.++          . ...||+..++ ++|+||+||+||||||++|||||||+.+.....+....    
T Consensus        81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~  149 (374)
T smart00552       81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR  149 (374)
T ss_pred             HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence            999999999987542          1 2357876554 49999999999999999999999999876433321000    


Q ss_pred             ----CCCCCCccccCCCccccccccccccceeecCCCCC--CcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEe
Q 015275          159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV  232 (410)
Q Consensus       159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPGRg--d~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYlssivv  232 (410)
                          .+.........+|+.     +++..|+||||||||  ++|+||||||||||||||||||||||||||||||++|||
T Consensus       150 ~~~~~~~~~~~~~~~~g~~-----~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv  224 (374)
T smart00552      150 KNIKRSKLRTKIEIGEGTV-----PVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL  224 (374)
T ss_pred             cccccccccccccccCCcc-----cccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence                011111112233433     356789999999998  579999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCCc-ceeE
Q 015275          233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEVI  311 (410)
Q Consensus       233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~-~Evi  311 (410)
                      |....      ..++|+|||++|+.++ ..+|.+|.+++|++...  +..+|+.   ...+ +...|+||+.++. .|++
T Consensus       225 g~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~--~~~~~~~---~~~~-s~~~Sl~W~~~~~~~ev~  291 (374)
T smart00552      225 GKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLV--SVADFQR---QTAK-SPNFSVNWSQGDESLEIL  291 (374)
T ss_pred             cCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeecc--Ccccccc---cCCC-CCCCeEEEEeCCCcEEEE
Confidence            96332      2479999999999877 57889999999998653  2335521   1111 2234899997655 8999


Q ss_pred             eCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCcccHHHHHhchHHHHHHHHHhhc---CCCCCCC
Q 015275          312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG---GPPFNNW  388 (410)
Q Consensus       312 ~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~~g~W  388 (410)
                      +|.+|++++       .++++|+|||++||++|.+|......... ...+|.|+|.++.+||++|+.|+.   +.+||+|
T Consensus       292 ng~~G~~~~-------~~~~~S~lcK~~l~~~f~~l~~~~~~~~~-~~~sY~e~K~~a~~Yq~aK~~l~~~l~~~~~g~W  363 (374)
T smart00552      292 NGLTGKTQK-------SLGSPSRLCKKALFRLFQKLCSKLKRDDL-LHISYAEAKEAASEYQEAKQLLFEALNKAGLGSW  363 (374)
T ss_pred             ECcCCeECC-------CCCCccHHHHHHHHHHHHHHHHhhccccc-CcCCHHHHHHhHHHHHHHHHHHHHHHhHhhCCCc
Confidence            999999883       25678999999999999999876644333 238999999999999999965542   3579999


Q ss_pred             CcCCCCCccee
Q 015275          389 PLKPLGYEVFF  399 (410)
Q Consensus       389 ~~kp~~~~~F~  399 (410)
                      ++||+++++|+
T Consensus       364 ~~KP~e~~~F~  374 (374)
T smart00552      364 IKKPPEQDQFK  374 (374)
T ss_pred             ccCCCchhccC
Confidence            99999999995

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]	Back alignment and domain information

>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3	Back alignment and domain information

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		410
1zy7_A		403	Crystal Structure Of The Catalytic Domain Of An Ade		4e-36

>pdb|1ZY7|A Chain A, Crystal Structure Of The Catalytic Domain Of An Adenosine Deaminase That Acts On Rna (hadar2) Bound To Inositol Hexakisphosphate (ihp) Length = 403

Back alignment and structure

Iteration: 1

Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 130/419 (31%), Positives = 197/419 (47%), Gaps = 66/419 (15%) Query: 4 ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60 + D VS+ VL ++ L P R VLA ++++ + KD +V+++ TGTKCI Sbjct: 23 QVLADAVSRLVLGKFGDLTDNFSSPHARR-KVLAGVVMTTGTDVKDAKVISVSTGTKCIN 81 Query: 61 RSLLSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFEL 117 +S G +ND HAEI++RR+LLRF YT++ LN + D +F+ Sbjct: 82 GEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNK-----------DDQKRSIFQK 130 Query: 118 GPTGKYRFREGWQLHLYISQLPCGDASLSSCHS------APRNFFSREGNSLSSVDELNG 171 G +R +E Q HLYIS PCGDA + S H A R+ + L + E Sbjct: 131 SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESG- 189 Query: 172 FKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSS 229 +G ++ +Q G +G+ L++SCSDKIARWN VG+QG+LLS F++P+Y SS Sbjct: 190 --EGTI-PVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSS 246 Query: 230 ITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSET 289 I +G +HL R++Y RI + E+L + +NKP+ S ++E Sbjct: 247 IILG-------SLYHGDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGIS-------NAEA 291 Query: 290 ASSTLTCGYSICWN-KSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLK 348 +S+ W EVI TTG+ + A S LCK+ L ++ + Sbjct: 292 RQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRA---------SRLCKHALYCRWMRVH 342 Query: 349 HESKIRCLAADIS----YRELKDGAQAYNIA-----SKVFKGGPPFNNWPLKPLGYEVF 398 + L + I+ Y E K A+ Y A + K G W KP + F Sbjct: 343 GKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAG--LGAWVEKPTEQDQF 399

PyMOL of 1zy7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		410
1zy7_A		403	RNA-specific adenosine deaminase B1, isoform drada	2e-90
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens} Length = 403	Back alignment and structure

 Score =  278 bits (711), Expect = 2e-90
 Identities = 115/409 (28%), Positives = 177/409 (43%), Gaps = 46/409 (11%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLIS--SPSKDLEVVALGTGTKCIGR 61
           +   D VS+ VL ++  L            VLA  +++  +  KD +V+++ TGTKCI  
Sbjct: 23  QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCING 82

Query: 62  SLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG 121
             +S  G  +ND HAEI++RR+LLRF YT++       +  +          +F+    G
Sbjct: 83  EYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQK--------RSIFQKSERG 134

Query: 122 KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFS--REGNSLSSVDELNGFKDGIYDS 179
            +R +E  Q HLYIS  PCGDA + S H       +                        
Sbjct: 135 GFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESGEGTIP 194

Query: 180 LQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPN 237
           ++    +Q   G   G+  L++SCSDKIARWN VG+QG+LLS F++P+Y SSI +G   +
Sbjct: 195 VRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYH 254

Query: 238 TSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCG 297
                   +HL R++Y RI  +  +L   + +NKP+            ++E         
Sbjct: 255 -------GDHLSRAMYQRISNIE-DLPPLYTLNKPLL-------SGISNAEARQPGKAPN 299

Query: 298 YSICWNK-SGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCL 356
           +S+ W       EVI  TTG+ +   A         S LCK+ L   ++ +  +     L
Sbjct: 300 FSVNWTVGDSAIEVINATTGKDELGRA---------SRLCKHALYCRWMRVHGKVPSHLL 350

Query: 357 AAD----ISYRELKDGAQAYNIASKVFKGGP---PFNNWPLKPLGYEVF 398
            +       Y E K  A+ Y  A               W  KP   + F
Sbjct: 351 RSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQF 399

PyMOL of 1zy7

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		410
1zy7_A		403	RNA-specific adenosine deaminase B1, isoform drada	100.0

>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.4e-94  Score=732.72  Aligned_cols=361  Identities=33%  Similarity=0.529  Sum_probs=289.2

Q ss_pred             cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHH
Q 015275            4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR   81 (410)
Q Consensus         4 ~~lad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~~--~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLAR   81 (410)
                      ..|||+||++|+++|++|+++|||...||||||||||+.+  .++++||||||||||++++.++.+|++|||||||||||
T Consensus        23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR  102 (403)
T 1zy7_A           23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR  102 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence            4689999999999999999999999889999999999975  34799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCCCceEeeCCcEEEEEeccCCCCccccccccCCCCC-----CC
Q 015275           82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRN-----FF  156 (410)
Q Consensus        82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~-----~~  156 (410)
                      |||+||||+||+.+....       ++. ...||++.++|+|+||+||+||||||++|||||||+.+.+...+     .+
T Consensus       103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~  174 (403)
T 1zy7_A          103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP  174 (403)
T ss_dssp             HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred             HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence            999999999998775210       011 23588888888999999999999999999999999876543211     00


Q ss_pred             --CCCCCCCCccccCCCccccccccccccceeecCCC--CCCcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEe
Q 015275          157 --SREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV  232 (410)
Q Consensus       157 --~~~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPG--Rgd~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYlssivv  232 (410)
                        ...+.+...++.++|+.+..     ..+.++|+||  ||++|+||||||||||||||||||||||||+|||||++|||
T Consensus       175 ~~~~~g~lr~k~~~g~g~~p~~-----~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~  249 (403)
T 1zy7_A          175 NRKARGQLRTKIESGEGTIPVR-----SNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL  249 (403)
T ss_dssp             --CCTTCCEEEETTCSSCEECC-----SSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred             chhhccccceeeccCCCCCCCC-----CcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence              01223333334444544321     1244577777  89999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCC-cceeE
Q 015275          233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVI  311 (410)
Q Consensus       233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi  311 (410)
                      |.+++       .++|+|||++|+..+ ..+|.||++++|++...+..  +.+     .+..++++|+||+.++ ..|||
T Consensus       250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r-----~~~~~~~~Si~W~~~~~~~Evi  314 (403)
T 1zy7_A          250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EAR-----QPGKAPNFSVNWTVGDSAIEVI  314 (403)
T ss_dssp             SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCC-----CCSCCCSEEEEEETTCSSCEEE
T ss_pred             CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--ccc-----cCCCCCCeeEEEEcCCCceEEE
Confidence            98753       478999999999875 35789999999998764322  222     2234567899999754 58999


Q ss_pred             eCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhc----ccCCcccHHHHHhchHHHHHHHHHhhc---CCC
Q 015275          312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIR----CLAADISYRELKDGAQAYNIASKVFKG---GPP  384 (410)
Q Consensus       312 ~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~----~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~  384 (410)
                      +|.+|++.         ++++|+|||++||++|++|...+...    ......||.|+|.++.+||++|+.|+.   +.+
T Consensus       315 ~g~tGk~~---------~~~~SrlcK~~l~~~f~~l~~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~ak~~l~~~~~~~~  385 (403)
T 1zy7_A          315 NATTGKDE---------LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAG  385 (403)
T ss_dssp             ETTTTEET---------TSCCCTTSHHHHHHHHHHHHTTSCGGGCSSCCSSCCSHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCC---------cCCcCHHHHHHHHHHHHHHHHHhccccccccCCCccCHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            99999742         24589999999999999998765332    235678999999999999999998863   368


Q ss_pred             CCCCCcCCCCCcceecC
Q 015275          385 FNNWPLKPLGYEVFFQG  401 (410)
Q Consensus       385 ~g~W~~kp~~~~~F~~~  401 (410)
                      ||+|++||+++|+|++.
T Consensus       386 lg~W~~Kp~e~d~F~l~  402 (403)
T 1zy7_A          386 LGAWVEKPTEQDQFSLT  402 (403)
T ss_dssp             SCCCCCCCGGGGCCCCC
T ss_pred             CCCCCcCCcccCceEec
Confidence            99999999999999874

PyMOL of 1zy7

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00