Citrus Sinensis ID: 015290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEccccccccccccccEEEEEEcccccEEEEEccccEEEEEEEEcccccccccccccccEEEEccccccccccEEEEEEEEcccccEEEccEEEccEEEEEEEEEcccccEEEEEccccEEEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEccEEcccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEEccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEccccccccccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEEccccccccccccccccccccEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEccccccccccccHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccEccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEccccEEEEEEcccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEccccEEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHccEEEcccccEEEEEcEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEcccccccc
Coil and Loop (DISEMBL)
MILNREEASASLEWKCSqafgernpdeelqdvdivsaiefdktgdylavgdrggRVILFetvggkntpnqhisRSELEKqmdftstshpeyryktefqshepefdylKSLEIEEKINRVrwcaapngsmfilstndktiKLWKVRDQKVKKikemdhfpfvssentllaeknfmnehnppsfahgyhleWTENMATKIANVgnsvharcqkvyphahdfninsisnnsdcetfvsaDDLRINLWnleisdqcfnivdmkpsnmddltevitsaefhpIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAaeshgsksfFTEIIASISdikfandgqhllsrDYMNLKLWDirmdstpvatfkihehlrpklcdlynndsifdkfecsvsgdglhfatgsyrrdng
Flexible Loop (DISEMBL)
milnreeasasleWKCSQAFgernpdeelqDVDIVSAIEFDKTGDYLAVGDRGGRVILfetvggkntpnqhisrseleKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCaapngsmfilstndktiklWKVRDQKVKkikemdhfpfvsSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSgdglhfatgsyrrdng
Low Complexity Region (SEG)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFninsisnnsDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG
Disordered region (IsUnstruct)
*****************************QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG***************************************EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT********
Disordered Region (DISOPRED)
**************KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP*Q**************STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD**
Disordered Region (DISEMBL)
************EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG
Disordered Region (DISPRO)
**********SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG*********************STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM*********************************EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.943	0.770	0.633	1e-144
Q0E2P1	525	Serine/threonine protein	yes	no	0.926	0.721	0.596	1e-138
A2X2K3	525	Serine/threonine protein	N/A	no	0.926	0.721	0.596	1e-138
Q38821	513	Serine/threonine protein	no	no	0.955	0.762	0.594	1e-138
Q5Z8Z7	581	Serine/threonine protein	no	no	0.946	0.666	0.588	1e-137
Q12702	463	Protein phosphatase PP2A	yes	no	0.872	0.771	0.511	1e-109
P53031	508	Protein phosphatase PP2A	N/A	no	0.848	0.683	0.496	1e-102
Q54Q99	483	Serine/threonine-protein	yes	no	0.919	0.778	0.490	1e-100
Q00362	526	Protein phosphatase PP2A	yes	no	0.899	0.699	0.468	2e-99
Q6DIY3	447	Serine/threonine-protein	yes	no	0.841	0.769	0.462	5e-97

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/401 (63%), Positives = 313/401 (78%), Gaps = 15/401 (3%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query: 71  HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
             SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct: 72  GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
           +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF 
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query: 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL 243
            G        +   + +   ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NL
Sbjct: 190 PGGIPSL--RLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247

Query: 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
           WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct: 248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307

Query: 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
           D   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct: 308 DSHTKLFEE-PEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366

Query: 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           ++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSY
Sbjct: 367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSY 407

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  493 bits (1269), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/414 (59%), Positives = 311/414 (75%), Gaps = 35/414 (8%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
           STNDKTIK WKV+++KVK+I  M+     +S+                    N   +EK 
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
           +   +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD 
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEE-HEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSY
Sbjct: 378 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 431

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  493 bits (1268), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/414 (59%), Positives = 311/414 (75%), Gaps = 35/414 (8%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
           STNDKTIK WKV+++KVK+I  M+     +S+                    N   +EK 
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
           +   +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD 
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEE-HEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSY
Sbjct: 378 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 431

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/414 (59%), Positives = 314/414 (75%), Gaps = 23/414 (5%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           + S  LEW+ SQ FGER+  EE+Q+VDI+SAIEFD +G++LA GDRGGRV+LFE     +
Sbjct: 13  DPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERT---D 69

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           T N   +R ELE + D+    HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC   N
Sbjct: 70  TNNSSGTRRELE-EADYP-LRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTAN 127

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE------------KNFM 174
           G++F+LSTNDKTIK WKV+D+K+KKI +M+  P  +  N  +A                +
Sbjct: 128 GALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGV 187

Query: 175 NEHNPPSFAHGYHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           +E N  S  + + L      +  +   + +  +S  ARC++VY HAHD++INSISNNSD 
Sbjct: 188 SEVNN-SLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDG 246

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEIS+Q FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G
Sbjct: 247 ETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKG 306

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD  +++  +  E  G KSFFTEIIAS+SDIKFA +G++LLSRDYM L
Sbjct: 307 SIRLIDLRQSALCDSHSKLFEE-PEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTL 365

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           KLWDI MD+ PVATF++HE+L+PKLCDLY NDSIFDKFEC +SG+GL  ATGSY
Sbjct: 366 KLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSY 419

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/418 (58%), Positives = 315/418 (75%), Gaps = 31/418 (7%)

Query: 6   EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65
           ++   ++EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +
Sbjct: 23  QQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAR 82

Query: 66  NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125
           +    + SR E+E+Q D   T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC   
Sbjct: 83  D----NASRREMERQ-DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTA 137

Query: 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-----------HFPFVSSENTLLA----- 169
           N S+ +LSTNDKTIK WKV+++KVK++  M+                SS   LL      
Sbjct: 138 NNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCS 197

Query: 170 -EKNFMNEHN--PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226
            + +F+N     PP    GY    +  +   +A+   ++ ARC++VY HAHD++INSIS 
Sbjct: 198 DKSSFLNSDILFPPG---GYP---SLRLPVVVASQDVNLVARCRRVYAHAHDYHINSIST 251

Query: 227 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286
           NSD ET++SADDLRINLWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYS
Sbjct: 252 NSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYS 311

Query: 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346
           SS+G +RL+D+RQSALCD+ ++I  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRD
Sbjct: 312 SSKGSIRLIDLRQSALCDNHSKIFEE-HEAPGSRSFFTEIIASISDIKFSRDGRYILSRD 370

Query: 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           YM LKLWD+ MDS PV+TF++HEHLRPKLCDLY NDSIFDKFEC +SGDGLH ATGSY
Sbjct: 371 YMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSY 428

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/397 (51%), Positives = 271/397 (68%), Gaps = 40/397 (10%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           +WK +Q FG++   E++ + DI+SA+EFD TGDYLA GD+GGRV+LFE            
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFE------------ 57

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R+  +K          EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+L
Sbjct: 58  -RNHSKKGC--------EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLL 108

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
           STNDKTIKLWK+ ++ +K                ++AE N  +  + P    G     ++
Sbjct: 109 STNDKTIKLWKLYEKNLK----------------VVAENNLSDSFHSP--MQGPLTTPSQ 150

Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
               ++ +    + A  ++VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD  
Sbjct: 151 LRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHS 210

Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
           FNIVD+KP NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++  D
Sbjct: 211 FNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED 270

Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 372
             E   SKSFF+EII+SISD+KF+ +G+++LSRDY+ LK+WD+ M+  PV T  +H+ LR
Sbjct: 271 -QEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLR 329

Query: 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409
            KLCDLY ND IFDKFEC+ SGD  H  +GSY  + G
Sbjct: 330 SKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFG 366

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53031|2ABA_CANTR Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/389 (49%), Positives = 267/389 (68%), Gaps = 42/389 (10%)

Query: 17  SQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE 76
           SQ FG++   E + + DI+S +EFD TGD+LA GD+GGRV+LFE             R++
Sbjct: 6   SQCFGDKGDIENITEADIISTVEFDHTGDFLATGDKGGRVVLFE-------------RNQ 52

Query: 77  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 136
            +K+         EY++ TEFQSH+ EFDYLKSLEIEEKIN+++W  + N S+ +LSTND
Sbjct: 53  SKKKQSC------EYKFFTEFQSHDAEFDYLKSLEIEEKINKIKWLKSANDSLCLLSTND 106

Query: 137 KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-NMA 195
           KTIKLWK++++++K +          SEN L    N +N H P S      L+  +  + 
Sbjct: 107 KTIKLWKIQERQIKLV----------SENNL----NGLN-HLPSSNIGIESLKLPQLQLH 151

Query: 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI 255
            K+      + A+ +K+Y +AH ++INSIS NSD ET++SADDLRINLWNL I+DQ FNI
Sbjct: 152 DKL------ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNI 205

Query: 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315
           VD+KP+NM++LTEVITSAEFHP+ CNL  YSSS+G ++L DMR ++LCD  A+I  +  +
Sbjct: 206 VDIKPANMEELTEVITSAEFHPLQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLD 265

Query: 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 375
              S +FFTEI +SISD+KF++DG+++ SRDYM +K+WD+ M++ P+ T  +HEHLR +L
Sbjct: 266 P-SSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPIKTIDVHEHLRERL 324

Query: 376 CDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           CD Y ND+IFDKFE    GD     TGSY
Sbjct: 325 CDTYENDAIFDKFEVQFGGDNKSVMTGSY 353

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Candida tropicalis (taxid: 5482)

>sp|Q54Q99|PH2AB_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit phr2AB OS=Dictyostelium discoideum GN=phr2aB PE=3 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/406 (49%), Positives = 277/406 (68%), Gaps = 30/406 (7%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    Q 
Sbjct: 5   LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
             +S+L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+
Sbjct: 60  SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEW 190
           L+TNDKTIKLWKV ++K+K++         S   +L +       H    + + G H   
Sbjct: 109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASNNTRSPSHTTYIYNSSGAHNMN 168

Query: 191 TENMAT------------KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
                +            K+      V A  +K++ +AH ++INSIS NSD ET++S+DD
Sbjct: 169 NNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDD 228

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R
Sbjct: 229 LRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLR 288

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
            SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWDI M+
Sbjct: 289 SSALCDNHAKVFEE-YEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINME 347

Query: 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           + PV T +IH++L+PKLCDLY ND IFDKFEC+++ DG    TGSY
Sbjct: 348 NKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSY 393

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Dictyostelium discoideum (taxid: 44689)

>sp|Q00362|2ABA_YEAST Protein phosphatase PP2A regulatory subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC55 PE=1 SV=2

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 186/397 (46%), Positives = 262/397 (65%), Gaps = 29/397 (7%)

Query: 8   ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67
           A  + ++K SQ FG++  D  + + D+++A+EFD TG+YLA GD+GGRV+LFE       
Sbjct: 2   AQNNFDFKFSQCFGDK-ADIVVTEADLITAVEFDYTGNYLATGDKGGRVVLFER------ 54

Query: 68  PNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 127
                           +++ H EY++ TEFQSH+ EFDYLKSLEIEEKIN ++W      
Sbjct: 55  ----------------SNSRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQR 98

Query: 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187
           S F+LSTNDKTIKLWKV ++ +K + + +      +E    A+K   + HN    +    
Sbjct: 99  SHFLLSTNDKTIKLWKVYEKNIKLVSQNN-----LTEGVTFAKKGKPDNHNSRGGSVRAV 153

Query: 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247
           L        +++     + A  +++Y +AH ++INSIS NSD ETF+SADDLRINLWNL+
Sbjct: 154 LSLQSLKLPQLSQHDKIIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLD 213

Query: 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307
           I DQ FNIVD+KP+NM++LTEVITSAEFHP  CNL  YSSS+G ++L DMRQ++LCD+  
Sbjct: 214 IPDQSFNIVDIKPTNMEELTEVITSAEFHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKT 273

Query: 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI 367
           +   +  +   + +FFTEI +SISDIKF+ +G+++ SRDY+ +K+WD+ MD+ P+ T  I
Sbjct: 274 KTFEEYLDPI-NHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDVNMDNKPLKTINI 332

Query: 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           HE L+ +L D Y ND+IFDKFE + SGD     TGSY
Sbjct: 333 HEQLKERLSDTYENDAIFDKFEVNFSGDSSSVMTGSY 369

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  355 bits (910), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 186/402 (46%), Positives = 258/402 (64%), Gaps = 58/402 (14%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 10  FQWCFSQVKGA--IDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQR---------- 57

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 111

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++V+         +  D F   S    +L   + M E +P   
Sbjct: 112 LSTNDKTIKLWKISERDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP--- 168

Query: 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 242
                                      ++++ +AH ++INSIS NSD ET++SADDLRIN
Sbjct: 169 ---------------------------RRIFANAHTYHINSISVNSDHETYLSADDLRIN 201

Query: 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302
           LW+LEI+D+ FNIVD+KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SAL
Sbjct: 202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSAL 261

Query: 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362
           CD  ++   +  E   S+SFF+EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV
Sbjct: 262 CDRHSKFFEE-PEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPV 320

Query: 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
            T+++HE+LR KLC LY ND IFDKFEC  +G      TGSY
Sbjct: 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSY 362

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
359491379	507	PREDICTED: serine/threonine protein phos	0.968	0.781	0.737	1e-178
255540613	506	protein phosphatase pp2a regulatory subu	0.951	0.768	0.752	1e-175
297733754	503	unnamed protein product [Vitis vinifera]	0.958	0.779	0.734	1e-174
224133594	520	predicted protein [Populus trichocarpa]	0.963	0.757	0.716	1e-172
449477652	416	PREDICTED: serine/threonine protein phos	0.990	0.973	0.673	1e-161
449440662	514	PREDICTED: serine/threonine protein phos	0.982	0.782	0.673	1e-160
356508685	506	PREDICTED: serine/threonine protein phos	0.973	0.786	0.647	1e-153
224128562	512	predicted protein [Populus trichocarpa]	0.960	0.767	0.631	1e-144
449476671	509	PREDICTED: serine/threonine protein phos	0.958	0.770	0.633	1e-144
224088860	521	predicted protein [Populus trichocarpa]	0.946	0.742	0.620	1e-143

>gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/407 (73%), Positives = 356/407 (87%), Gaps = 11/407 (2%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           + NQ  SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 66  SLNQWHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 124

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 125 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 184

Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
            LEWTE   NM+       K+AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 185 ALEWTEKIDNMSPSQDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 244

Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 245 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 304

Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 305 RQSAICDHNARILQH-GESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 363

Query: 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSY
Sbjct: 364 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSY 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/400 (75%), Positives = 340/400 (85%), Gaps = 11/400 (2%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK SQ FGER P E++QD D+VSAIEFDK+GDYLAVGDRGGRV++FE    K+TPNQ+
Sbjct: 14  LEWKFSQVFGERIPGEDVQDADVVSAIEFDKSGDYLAVGDRGGRVVIFERKDRKDTPNQY 73

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            SR+ELE  +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FI
Sbjct: 74  NSRNELE-TLDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFI 132

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWKV++ K KK+KE+D    V SE+ LLAE++F+ E   PS  +GYHL WT
Sbjct: 133 LSTNDKTIKLWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWT 190

Query: 192 ENMA-------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 244
           EN +       TK A   ++  A C+KVY HAHDFNINSISNNSD ETF+SADDLRINLW
Sbjct: 191 ENNSSPFQEGHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLW 250

Query: 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304
           NLEISDQCFNI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD
Sbjct: 251 NLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCD 310

Query: 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 364
            SARIL+D AE  GSKSFFTEIIASISD+KF NDG H+LSRDYMNLKLWDIRMD  P++ 
Sbjct: 311 QSARILQD-AECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPLPISI 369

Query: 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           FKIHEHLRPKL DLYNNDSIFDKFEC +SGDGLHFATGSY
Sbjct: 370 FKIHEHLRPKLSDLYNNDSIFDKFECCISGDGLHFATGSY 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/407 (73%), Positives = 354/407 (86%), Gaps = 15/407 (3%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFER---KD 62

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
             + H SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 63  EKDWH-SRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 120

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 121 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 180

Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
            LEWTE   NM+       K AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 181 ALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 240

Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 241 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 300

Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 301 RQSAICDHNARILQH-GESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 359

Query: 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSY
Sbjct: 360 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSY 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 291/406 (71%), Positives = 343/406 (84%), Gaps = 12/406 (2%)

Query: 9   SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP 68
           S  L+WK SQ FGE  P E+LQDVD+VS+I F+K+GDYLAVGDRGGRV++F+   GK+TP
Sbjct: 16  SPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTP 75

Query: 69  NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128
           N  ++R+ELE+ +D   T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+  NGS
Sbjct: 76  NSFLNRNELER-LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGS 134

Query: 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188
           +FILSTNDKTIKLWKV ++K+KK++EM+H   V SEN LL E +FM+E + P   +GY+L
Sbjct: 135 LFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNL 194

Query: 189 EWTENMA----------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
           +W E +A          TKI +   +  A C+KVY HAHDFNINSISNNSD ETF+S+DD
Sbjct: 195 DWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDD 254

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMR
Sbjct: 255 LRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMR 314

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
           QSA+CDHSARIL+D AE  GSKSFFTE+IASISD+KF  DGQH+L+RDYMNLKLWD+RMD
Sbjct: 315 QSAICDHSARILQD-AECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMD 373

Query: 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           S+PVA FKIHEHLRPKL DLYN+DSIFDKFEC +SGDGLHFATGSY
Sbjct: 374 SSPVAVFKIHEHLRPKLSDLYNDDSIFDKFECCISGDGLHFATGSY 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477652|ref|XP_004155082.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/417 (67%), Positives = 336/417 (80%), Gaps = 12/417 (2%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           S ++G H   +ENM             IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407
           KLWDI   S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSYR D
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYRFD 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/414 (67%), Positives = 334/414 (80%), Gaps = 12/414 (2%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           S ++G H   +ENM             IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           KLWDI   S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSY
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSY 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/414 (64%), Positives = 330/414 (79%), Gaps = 16/414 (3%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M  N + +SA L WK SQ  G+R P+E LQ+ DI++A+ F+K GDYLAVGDRGGRV++FE
Sbjct: 1   MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
               K   +    R ELE Q DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VR
Sbjct: 61  RDDRKKNVSIANDRRELE-QRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVR 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           W  + +   FILSTNDKTIKLWKV++ KVK++KEM   P + SEN LLAE++F+      
Sbjct: 120 WWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLE 175

Query: 181 SFAHGYHLEWTE----------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           + A+GYHLEW E          ++  +I  + + + A+CQKVY +AH FNINSISNNSD 
Sbjct: 176 TTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDY 235

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLE+SDQCFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+G
Sbjct: 236 ETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQG 295

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RL D+RQ+A+CDH++R+ +   ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+
Sbjct: 296 FIRLSDLRQAAICDHASRMFQH-GESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNM 354

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           KLWD+RM+S+PVA FKIHEHLRPKL +LYNND IFDKFEC  SGDGLHFATGSY
Sbjct: 355 KLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSY 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/415 (63%), Positives = 317/415 (76%), Gaps = 22/415 (5%)

Query: 7   EASAS----LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62
           EA AS    LEWK SQ FGER   EE+Q+VDI+SAIEFD++GD+LA GDRGGRV+LFE  
Sbjct: 9   EAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGGRVVLFERT 68

Query: 63  GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122
              +T +   SR +LE+ M +  + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC
Sbjct: 69  ---DTKDHGGSRRDLER-MGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 124

Query: 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP--------FVSSENTLLAEKNFM 174
              NG++F+LSTNDKTIK WKV+++KVKKI EM+  P          SS N+ + ++   
Sbjct: 125 QTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGKQYLA 184

Query: 175 N----EHNPPSFAHGYHLEWTENMATKIANVG-NSVHARCQKVYPHAHDFNINSISNNSD 229
           N     HN PS           ++   +      S+ ARC++VY HAHD++INSISNNSD
Sbjct: 185 NGGDKSHNLPSNDLSISPGGFPSLRLPVVTSNETSLMARCRRVYAHAHDYHINSISNNSD 244

Query: 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289
            ETF+SADDLRINLWNLEIS+Q FNI D+KP+NM+DLTEVITSAEFHP +CN+LAYSSS+
Sbjct: 245 GETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCNMLAYSSSK 304

Query: 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349
           G +RL+DMRQSALCD  A++  +  E+ GS+SFFTEIIASISDIKFA DG+H+LSRDYM 
Sbjct: 305 GSIRLIDMRQSALCDSHAKLFEE-PEAPGSRSFFTEIIASISDIKFARDGRHILSRDYMT 363

Query: 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           LKLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC  SGDGL  ATGSY
Sbjct: 364 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCSSGDGLRVATGSY 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476671|ref|XP_004154802.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/406 (63%), Positives = 315/406 (77%), Gaps = 14/406 (3%)

Query: 8   ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67
           +S  L+WK SQ FGER   EE+Q+VDI+SAIEFDKTGD+LA GDRGGRV+LFE    K+ 
Sbjct: 14  SSQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDRKDN 73

Query: 68  PNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 127
                +R +LEK MD + T HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG
Sbjct: 74  GG---TRKDLEK-MDHSVTRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 129

Query: 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAHG 185
           ++F+LSTNDKTIK WKV+++K+KKI  M+     +  N  +A  +    H P   S   G
Sbjct: 130 ALFLLSTNDKTIKFWKVQEKKIKKISNMNVDTSKAVGNGCIASSSSSTTHLPNGGSCDGG 189

Query: 186 YH------LEWTENMATKIANV-GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
           Y+      L    ++  ++     +S+ ARC++VY HAHD++INSISNNSD ETF+SADD
Sbjct: 190 YNHPSNDLLGAISSLRLQVVTSHESSLLARCRRVYAHAHDYHINSISNNSDGETFISADD 249

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSS+G +RLVD+R
Sbjct: 250 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLR 309

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
           QSALCD  A++  +  E+ GS+SFFTEIIASISDIKF  +G+H+LSRDYM LKLWDI MD
Sbjct: 310 QSALCDSHAKLFEE-PEAPGSRSFFTEIIASISDIKFGTNGRHILSRDYMTLKLWDINMD 368

Query: 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           S PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL   TGSY
Sbjct: 369 SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVTTGSY 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/408 (62%), Positives = 318/408 (77%), Gaps = 21/408 (5%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK +Q FGER   EE+Q+VDI+SAIEFD+TGD+LA GDRGGRV+LFE     +T +  
Sbjct: 26  LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERT---DTRDHG 82

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            +R +LE+ MDF    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC + NG++F+
Sbjct: 83  GNRRDLER-MDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFL 141

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIK WKV+++KVKKI +M+  P  ++ N  L   + ++  + P  A+G  L+  
Sbjct: 142 LSTNDKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPS-ISTSSKPYTANGGCLDKP 200

Query: 192 ENMATK---------------IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA 236
             ++                 + ++  S+  RC+++Y HAHD++INSISNNSD ETF+SA
Sbjct: 201 LGLSNDFSFPPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISA 260

Query: 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296
           DDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSSRG +RLVD
Sbjct: 261 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVD 320

Query: 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356
           MRQSALCD  +++  +  E  GS+SFFTEIIASISDIKFA DG+++LSRDYM LKLWDI 
Sbjct: 321 MRQSALCDSHSKLFEE-QEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDIN 379

Query: 357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           MDS PV+TF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSY
Sbjct: 380 MDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.943	0.770	0.615	2.8e-128
DICTYBASE|DDB_G0283905	483	phr2aB "protein phosphatase 2A	0.919	0.778	0.477	3.5e-98
ASPGD|ASPL0000046009	472	AN1545 [Emericella nidulans (t	0.748	0.648	0.504	1.1e-97
CGD|CAL0004658	519	orf19.1468 [Candida albicans (	0.486	0.383	0.545	1.3e-97
SGD|S000003158	526	CDC55 "Non-essential regulator	0.777	0.604	0.472	1.5e-91
WB|WBGene00006352	495	sur-6 [Caenorhabditis elegans	0.486	0.402	0.575	1.3e-90
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.486	0.445	0.54	1.3e-90
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.486	0.442	0.53	5e-89
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.486	0.441	0.53	5e-89
UNIPROTKB|Q5ZIY5	451	PPP2R2D "Serine/threonine-prot	0.486	0.441	0.53	5e-89

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 247/401 (61%), Positives = 306/401 (76%)

Query:    11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
             SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct:    15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query:    71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
               SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct:    72 GGSRKDLE-QTDYP-VRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query:   131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
             +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF 
Sbjct:   130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query:   184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 243
              G  +  +  +   + +   ++ ARC++VY HAHD+         D ETF+SADDLR+NL
Sbjct:   190 PG-GIP-SLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247

Query:   244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
             WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct:   248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307

Query:   304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
             D   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct:   308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366

Query:   364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
             ++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSY
Sbjct:   367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSY 407

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 194/406 (47%), Positives = 272/406 (66%)

Query:    12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
             L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    Q 
Sbjct:     5 LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59

Query:    72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
               +S+L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+
Sbjct:    60 SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108

Query:   132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYH-LE 189
             L+TNDKTIKLWKV ++K+K++         S   +L +       H    + + G H + 
Sbjct:   109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASNNTRSPSHTTYIYNSSGAHNMN 168

Query:   190 WTENMATKIANVGNS-----------VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADD 238
                N +    N+ N            V A  +K++ +AH +         D ET++S+DD
Sbjct:   169 NNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDD 228

Query:   239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
             LRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R
Sbjct:   229 LRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLR 288

Query:   299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
              SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWDI M+
Sbjct:   289 SSALCDNHAKVFEEY-EDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINME 347

Query:   359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
             + PV T +IH++L+PKLCDLY ND IFDKFEC+++ DG    TGSY
Sbjct:   348 NKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSY 393

GO:0005615 "extracellular space" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

ASPGD|ASPL0000046009 AN1545 [Emericella nidulans (taxid:162425)]

 Score = 828 (296.5 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
 Identities = 162/321 (50%), Positives = 220/321 (68%)

Query:    90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
             EY++ TEFQSHEPEFDYLKSLEIEEKIN+++WC   N S F+LSTNDKTIKLWKV D+ +
Sbjct:    66 EYKFHTEFQSHEPEFDYLKSLEIEEKINKIKWCRRQNASHFLLSTNDKTIKLWKVFDKSL 125

Query:   150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS---VH 206
             K + E +    +S+E T       +     P       + + ++ A K+  + +    V 
Sbjct:   126 KVVAENN----LSTELT----PGGVGGGGAP---RAPRVSFKDSSALKLPRMTHHDTVVA 174

Query:   207 ARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266
             A  ++ Y +AH +         D ETF+S+DDLR+NLWNL I DQ FNIVD+KP+NM++L
Sbjct:   175 AVPRRTYANAHAYHINSISVNSDGETFISSDDLRVNLWNLNIQDQSFNIVDIKPANMEEL 234

Query:   267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326
             TEVIT+AEFHP  CN   Y+SS+G ++L DMRQ ALCD   ++  +  E   S+SFF+EI
Sbjct:   235 TEVITAAEFHPTSCNWFMYASSKGTIKLADMRQRALCDTHHKLF-EQEEDASSRSFFSEI 293

Query:   327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386
             I+SISD++F++DG++++SRDY+ +K+WD+ M+  PV T  IHEHLRP+LCD Y NDSIFD
Sbjct:   294 ISSISDVRFSHDGRYIVSRDYLTVKIWDVNMERQPVKTIPIHEHLRPRLCDTYENDSIFD 353

Query:   387 KFECSVSGDGLHFATGSYRRD 407
             KFE   SGD  +  TGSY  +
Sbjct:   354 KFEVVFSGDAENVMTGSYNNN 374

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)]

 Score = 602 (217.0 bits), Expect = 1.3e-97, Sum P(3) = 1.3e-97
 Identities = 109/200 (54%), Positives = 147/200 (73%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             + A+ +K+Y +AH +         D ET++SADDLRINLWNL I+DQ FNIVD+KP+NM+
Sbjct:   159 ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANME 218

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVITSAEFHP  CNL  YSSS+G ++L DMR ++LCD  A+I  +  +   S +FFT
Sbjct:   219 ELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDP-SSHNFFT 277

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EI +SISD+KF++DG+++ SRDYM +K+WD+ M++ P+ T  +HEHLR +LCD Y ND+I
Sbjct:   278 EITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDVHEHLRERLCDTYENDAI 337

Query:   385 FDKFECSVSGDGLHFATGSY 404
             FDKFE    GD     TGSY
Sbjct:   338 FDKFEVQFGGDNKSVMTGSY 357

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

SGD|S000003158 CDC55 "Non-essential regulatory subunit B of protein phosphatase 2A (PP2A)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 791 (283.5 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
 Identities = 153/324 (47%), Positives = 215/324 (66%)

Query:    84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143
             +++ H EY++ TEFQSH+ EFDYLKSLEIEEKIN ++W      S F+LSTNDKTIKLWK
Sbjct:    55 SNSRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQRSHFLLSTNDKTIKLWK 114

Query:   144 VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203
             V ++ +K + + +      +E    A+K   + HN    +    L        +++    
Sbjct:   115 VYEKNIKLVSQNN-----LTEGVTFAKKGKPDNHNSRGGSVRAVLSLQSLKLPQLSQHDK 169

Query:   204 SVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263
              + A  +++Y +AH +         D ETF+SADDLRINLWNL+I DQ FNIVD+KP+NM
Sbjct:   170 IIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLDIPDQSFNIVDIKPTNM 229

Query:   264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323
             ++LTEVITSAEFHP  CNL  YSSS+G ++L DMRQ++LCD+  +   +  +   + +FF
Sbjct:   230 EELTEVITSAEFHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKTKTFEEYLDPI-NHNFF 288

Query:   324 TEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS 383
             TEI +SISDIKF+ +G+++ SRDY+ +K+WD+ MD+ P+ T  IHE L+ +L D Y ND+
Sbjct:   289 TEITSSISDIKFSPNGRYIASRDYLTVKIWDVNMDNKPLKTINIHEQLKERLSDTYENDA 348

Query:   384 IFDKFECSVSGDGLHFATGSYRRD 407
             IFDKFE + SGD     TGSY  +
Sbjct:   349 IFDKFEVNFSGDSSSVMTGSYNNN 372

GO:0001100 "negative regulation of exit from mitosis" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISA;IPI

GO:0005935 "cellular bud neck" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IGI

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005934 "cellular bud tip" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

WB|WBGene00006352 sur-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 626 (225.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
 Identities = 115/200 (57%), Positives = 151/200 (75%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++VY +AH +         D ETF+SADDLR+NLWNLEI+++ FNIVD+KP+NM+
Sbjct:   204 VEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANME 263

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP  CN   YSSS+G +RL DMR  ALCD  A+I  +  E   S+SFF+
Sbjct:   264 ELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEP-EDPQSRSFFS 322

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EIIAS+SD+KF+++G++LL+RDY+ +K+WD+ M+S PV T+ +H +LR KLC LY NDSI
Sbjct:   323 EIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSI 382

Query:   385 FDKFECSVSGDGLHFATGSY 404
             FDKFEC  SGD  H  TGSY
Sbjct:   383 FDKFECDWSGDDKHILTGSY 402

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040026 "positive regulation of vulval development" evidence=IGI;IMP

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 609 (219.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
 Identities = 108/200 (54%), Positives = 152/200 (76%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct:   283 EIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342

Query:   385 FDKFECSVSGDGLHFATGSY 404
             FDKFEC  +G      TGSY
Sbjct:   343 FDKFECCWNGSDSAIMTGSY 362

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 599 (215.9 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 106/200 (53%), Positives = 152/200 (76%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   167 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 226

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   227 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 285

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   286 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 345

Query:   385 FDKFECSVSGDGLHFATGSY 404
             FDKFEC  +G      TGSY
Sbjct:   346 FDKFECCWNGSDGAIMTGSY 365

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 599 (215.9 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 106/200 (53%), Positives = 152/200 (76%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   385 FDKFECSVSGDGLHFATGSY 404
             FDKFEC  +G      TGSY
Sbjct:   347 FDKFECCWNGSDGAIMTGSY 366

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 599 (215.9 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 106/200 (53%), Positives = 152/200 (76%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   385 FDKFECSVSGDGLHFATGSY 404
             FDKFEC  +G      TGSY
Sbjct:   347 FDKFECCWNGSDGAIMTGSY 366

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.5966	0.9266	0.7219	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.6334	0.9437	0.7704	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.4722	0.8337	0.8004	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.5113	0.8728	0.7710	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-120
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  357 bits (918), Expect = e-120
 Identities = 181/397 (45%), Positives = 243/397 (61%), Gaps = 41/397 (10%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
             K  Q FG++       + D ++A+EFD+TG YLA GD+GGRV+LFE            
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFE------------ 54

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R +             EY++ TEFQSHE EFDYLKSLEIEEKIN + W      + F+L
Sbjct: 55  -REKSY---------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
           STNDKTIKLWK+ ++ +K          V +EN L    +            G      E
Sbjct: 105 STNDKTIKLWKIYEKNLK----------VVAENNLSDSFHSPMG--------GPLTSTKE 146

Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
            +  +++     + A+  +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D  
Sbjct: 147 LLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS 206

Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
           FNIVD+KP NM++LTEVITSAEFHP  CN+  YSSS+G ++L D+RQSALCD+S ++   
Sbjct: 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266

Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 372
                    FF EI++SISD KF+++G+++LSRDY+ +K+WD+ M   P+ T  +H  L 
Sbjct: 267 -TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325

Query: 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409
            +L D+Y ND+IFDKFE S SGD  H  +GSY  + G
Sbjct: 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFG 362

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 73/381 (19%), Positives = 130/381 (34%), Gaps = 120/381 (31%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
             V+ + F   G  LA G   G + +++   G                            
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---------------------------E 42

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
                + H               +  V   A  +G+     ++DKTI+LW +  +  + +
Sbjct: 43  LLRTLKGHT------------GPVRDVAASA--DGTYLASGSSDKTIRLWDL--ETGECV 86

Query: 153 KEM-DHFPFVSS-----ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206
           + +  H  +VSS     +  +L+  +                    +   K+ +V     
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSR-------------------DKTIKVWDVET--- 124

Query: 207 ARCQKVYPHAHDFNINSISNNSDCETFV--SADDLRINLWNLEISDQCFNIVDMKPSNMD 264
            +C        D+ +NS++ + D  TFV  S+ D  I LW+L  + +C          + 
Sbjct: 125 GKCLTTLRGHTDW-VNSVAFSPD-GTFVASSSQDGTIKLWDLR-TGKCVA-------TLT 174

Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             T  + S  F P    LL+ SSS G ++L D+                 +  G+     
Sbjct: 175 GHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLS--------------TGKCLGTLRGHE 219

Query: 325 EIIASISDIKFANDGQHLLS--RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382
             + S++   F+ DG  L S   D   +++WD+R     V T   H +            
Sbjct: 220 NGVNSVA---FSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN------------ 262

Query: 383 SIFDKFECSVSGDGLHFATGS 403
           S+      + S DG   A+GS
Sbjct: 263 SVTS---LAWSPDGKRLASGS 280

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
KOG2055	514	consensus WD40 repeat protein [General function pr	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG4328	498	consensus WD40 protein [Function unknown]	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG1188	376	consensus WD40 repeat protein [General function pr	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG1334	559	consensus WD40 repeat protein [General function pr	99.65
KOG4227	609	consensus WD40 repeat protein [General function pr	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.53
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.51
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
KOG2315	566	consensus Predicted translation initiation factor	99.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.48
PRK00178	430	tolB translocation protein TolB; Provisional	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
KOG4547	541	consensus WD40 repeat-containing protein [General	99.33
KOG1334	559	consensus WD40 repeat protein [General function pr	99.32
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.27
KOG2315	566	consensus Predicted translation initiation factor	99.25
KOG2321	703	consensus WD40 repeat protein [General function pr	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.24
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.22
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.22
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
PRK04043	419	tolB translocation protein TolB; Provisional	99.17
COG4946	668	Uncharacterized protein related to the periplasmic	99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.12
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.02
KOG2314	698	consensus Translation initiation factor 3, subunit	99.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.97
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.92
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.91
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.86
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.84
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.84
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.83
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.78
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.73
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.71
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.71
KOG2695	425	consensus WD40 repeat protein [General function pr	98.71
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.63
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.62
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.55
KOG2695	425	consensus WD40 repeat protein [General function pr	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.47
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.45
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.44
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.44
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.43
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.33
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.27
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.23
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.15
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.13
KOG3621	726	consensus WD40 repeat-containing protein [General	98.12
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.11
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.09
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.09
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.06
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.0
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.89
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.82
PRK02888	635	nitrous-oxide reductase; Validated	97.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.75
PRK02888	635	nitrous-oxide reductase; Validated	97.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.7
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.69
KOG3621	726	consensus WD40 repeat-containing protein [General	97.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.49
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.46
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.45
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.42
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.37
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.33
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.32
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.3
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.22
COG3391	381	Uncharacterized conserved protein [Function unknow	97.22
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.18
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.16
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.99
KOG2395	644	consensus Protein involved in vacuole import and d	96.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.79
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.7
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.67
PRK13616	591	lipoprotein LpqB; Provisional	96.67
COG3391	381	Uncharacterized conserved protein [Function unknow	96.64
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.55
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.52
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.48
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.43
PRK13616	591	lipoprotein LpqB; Provisional	96.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.14
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.98
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.87
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.82
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.8
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.64
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.63
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.37
KOG2444	238	consensus WD40 repeat protein [General function pr	95.22
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.21
KOG2444	238	consensus WD40 repeat protein [General function pr	95.21
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.17
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.1
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.07
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.81
KOG2395	644	consensus Protein involved in vacuole import and d	94.69
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.66
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.5
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.44
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.25
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.24
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.16
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.0
PHA02713	557	hypothetical protein; Provisional	93.88
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.84
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.53
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.79
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.72
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.36
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	92.25
COG5167	776	VID27 Protein involved in vacuole import and degra	92.01
KOG2247	615	consensus WD40 repeat-containing protein [General	91.92
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.39
PHA02713	557	hypothetical protein; Provisional	91.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.1
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.59
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.45
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.15
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.13
PRK13684	334	Ycf48-like protein; Provisional	90.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.92
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.56
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.72
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.71
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.43
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.98
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.8
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.75
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.47
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.39
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.05
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	87.02
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.63
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.28
KOG2247	615	consensus WD40 repeat-containing protein [General	85.94
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.46
PHA03098	534	kelch-like protein; Provisional	85.4
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.16
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.75
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	83.07
COG5167	776	VID27 Protein involved in vacuole import and degra	81.6
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.09
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	81.02
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.81
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.24
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	80.05

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-46  Score=304.87  Aligned_cols=281  Identities=19%  Similarity=0.274  Sum_probs=243.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|..-|.|++|+|||+.||+|+.||+|++||..+++.                          ....|.+|.       
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--------------------------~g~~l~gH~-------  200 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------------IGRALRGHK-------  200 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--------------------------ccccccCcc-------
Confidence            45999999999999999999999999999999998875                          467899999       


Q ss_pred             cceeccceEEEEEEe---cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          109 SLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~---s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                           ..|++++|.|   .|.+.+|++++.||.|+|||+..+.+......+              ...+.|...+...++
T Consensus       201 -----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--------------T~~VTCvrwGG~gli  261 (480)
T KOG0271|consen  201 -----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--------------TASVTCVRWGGEGLI  261 (480)
T ss_pred             -----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC--------------ccceEEEEEcCCceE
Confidence                 9999999987   677889999999999999999998887765433              334566666667788


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeC-----------CCC------------------------
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----------SDC------------------------  230 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-----------~~~------------------------  230 (409)
                      ++++.  |++|++|+...   +.+.+.+ .+|...|+.++.+           |.+                        
T Consensus       262 ySgS~--DrtIkvw~a~d---G~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  262 YSGSQ--DRTIKVWRALD---GKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             EecCC--CceEEEEEccc---hhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence            88887  99999999866   5666666 8999999999887           223                        


Q ss_pred             -CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccc
Q 015290          231 -ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (409)
Q Consensus       231 -~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  308 (409)
                       +.|++| +|.++.+|+.....+++..       +.+|..-|+.+.|+||+ +++|++|.|..|++||.++|+.    +.
T Consensus       336 ~erlVSgsDd~tlflW~p~~~kkpi~r-------mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~----la  403 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSKKPITR-------MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKF----LA  403 (480)
T ss_pred             cceeEEecCCceEEEecccccccchhh-------hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcch----hh
Confidence             359999 9999999998866666655       79999999999999999 9999999999999999999874    23


Q ss_pred             cccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (409)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (409)
                      .             |.+|-++|..++|+.|.++|++|+ |.++++||+++ .+....+.+|.+.+               
T Consensus       404 s-------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEV---------------  454 (480)
T KOG0271|consen  404 S-------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEV---------------  454 (480)
T ss_pred             h-------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-eeecccCCCCCceE---------------
Confidence            3             556789999999999999999998 59999999997 88899999999987               


Q ss_pred             eeEEEcCCCCeEEEcccCCCC
Q 015290          388 FECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       388 ~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +++.|+|||+.+++|+.|..+
T Consensus       455 f~vDwspDG~rV~sggkdkv~  475 (480)
T KOG0271|consen  455 FAVDWSPDGQRVASGGKDKVL  475 (480)
T ss_pred             EEEEecCCCceeecCCCceEE
Confidence            699999999999999999753

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-45  Score=299.43  Aligned_cols=286  Identities=17%  Similarity=0.202  Sum_probs=233.6

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .-+|.++|.|+.|+|+|+.||+|+.|.++++||+.+..                           +..++++|.      
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---------------------------p~~t~KgH~------  157 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---------------------------PLFTCKGHK------  157 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---------------------------cceeecCCc------
Confidence            34599999999999999999999999999999999876                           467889999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.||+|  +|||+.|++|+.||+|++||..+++..-..--.+..-|.++.+.+..       ..+....+++
T Consensus       158 ------~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h-------l~p~~r~las  222 (480)
T KOG0271|consen  158 ------NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH-------LVPPCRRLAS  222 (480)
T ss_pred             ------cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccc-------cCCCccceec
Confidence                  89999999  89999999999999999999998865443322233333333333221       1233345555


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  ||.++|||+..   +.++..+ .+|..+|+|+.|--+| ++++| .|++|++|+.. .+.+.+.       +.+|
T Consensus       223 ~sk--Dg~vrIWd~~~---~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~-------lkGH  287 (480)
T KOG0271|consen  223 SSK--DGSVRIWDTKL---GTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRE-------LKGH  287 (480)
T ss_pred             ccC--CCCEEEEEccC---ceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHh-------hccc
Confidence            544  99999999976   5677776 8999999999997655 88899 99999999998 6777766       7999


Q ss_pred             cCceEEEEEe-----------CCC------------------------CCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290          267 TEVITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (409)
Q Consensus       267 ~~~v~~~~~~-----------p~~------------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  311 (409)
                      ..+|+.++.+           |.+                        +..|++|+.|.++.+|+....+.+   +..  
T Consensus       288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~r--  362 (480)
T KOG0271|consen  288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITR--  362 (480)
T ss_pred             chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhh--
Confidence            9999999876           323                        135999999999999987653311   122  


Q ss_pred             ccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeE
Q 015290          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  390 (409)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  390 (409)
                                 +.+|..-|+.+.||||++|+|+++ |+.|++||-++ |+.+.+|.+|-.++               +.+
T Consensus       363 -----------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Yqv  415 (480)
T KOG0271|consen  363 -----------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQV  415 (480)
T ss_pred             -----------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEE
Confidence                       456788999999999999999998 69999999997 99999999999987               599


Q ss_pred             EEcCCCCeEEEcccCCCC
Q 015290          391 SVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       391 ~~spdg~~l~s~s~dg~i  408 (409)
                      +||.|.++|++||.|.++
T Consensus       416 awsaDsRLlVS~SkDsTL  433 (480)
T KOG0271|consen  416 AWSADSRLLVSGSKDSTL  433 (480)
T ss_pred             EeccCccEEEEcCCCceE
Confidence            999999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-44  Score=298.08  Aligned_cols=281  Identities=19%  Similarity=0.258  Sum_probs=243.4

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .++.+.+|..+.|+.|++.||||+.+|.++||+..+..                           .+..|.||.      
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~------  217 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT------  217 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc------
Confidence            34467899999999999999999999999999998775                           478899999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.++.|+|-.++..+++|+.||++++|++.+......+..+.             ..+..+.++|++.++.+
T Consensus       218 ------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~-------------~RVs~VafHPsG~~L~T  278 (459)
T KOG0272|consen  218 ------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL-------------ARVSRVAFHPSGKFLGT  278 (459)
T ss_pred             ------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch-------------hhheeeeecCCCceeee
Confidence                  89999999763247799999999999999999876554444332             34667788999999999


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      +.+  |.+-++||+++..+.    ....+|...|.+++|+|||..+++| .|..-+|||++ ++.++-.       +.+|
T Consensus       279 asf--D~tWRlWD~~tk~El----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~-------L~gH  344 (459)
T KOG0272|consen  279 ASF--DSTWRLWDLETKSEL----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMF-------LAGH  344 (459)
T ss_pred             ccc--ccchhhcccccchhh----HhhcccccccceeEecCCCceeeccCccchhheeecc-cCcEEEE-------eccc
Confidence            999  999999999874432    1237999999999999999999999 99999999999 7777766       6899


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEe
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg  345 (409)
                      ...|.+++|+|+| ..|||||.|++++|||++..+.    ..+             +.+|..-|+.+.|+| .|.+|+|+
T Consensus       345 ~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~-------------ipAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  345 IKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYT-------------IPAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             ccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----cee-------------cccccchhhheEecccCCeEEEEc
Confidence            9999999999999 9999999999999999998653    222             345678999999999 67899999


Q ss_pred             e-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      + |++++||.-++ ..+++.+.||++.+               .+++++||+++++|++.|+++
T Consensus       407 syD~t~kiWs~~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  407 SYDNTVKIWSTRT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             ccCcceeeecCCC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCcee
Confidence            8 59999999985 89999999999986               699999999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.7e-39  Score=254.64  Aligned_cols=282  Identities=19%  Similarity=0.330  Sum_probs=227.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.++|.++.|++|.++|++++.||.+.|||.-+..+                           ...+.-..       
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK---------------------------~haipl~s-------   97 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK---------------------------VHAIPLPS-------   97 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc---------------------------eeEEecCc-------
Confidence            34999999999999999999999999999999887653                           22333333       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee---eeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                           ..|...+|  +|.|+++++|+.|+...||++.+.+..   ....           .......++++....+...+
T Consensus        98 -----~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r-----------~l~gHtgylScC~f~dD~~i  159 (343)
T KOG0286|consen   98 -----SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR-----------ELAGHTGYLSCCRFLDDNHI  159 (343)
T ss_pred             -----eeEEEEEE--CCCCCeEEecCcCceeEEEecccccccccceeee-----------eecCccceeEEEEEcCCCce
Confidence                 68999999  899999999999999999999854211   1110           01112222222222223334


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      .+++.  |.+.-+||+++   ++.++.| .+|.+.|.+++++| +++.+++| .|+..+|||++ .+.+.+.       +
T Consensus       160 lT~SG--D~TCalWDie~---g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qt-------F  225 (343)
T KOG0286|consen  160 LTGSG--DMTCALWDIET---GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQT-------F  225 (343)
T ss_pred             EecCC--CceEEEEEccc---ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEe-------e
Confidence            44433  88999999987   6777777 89999999999999 89999999 99999999999 7788877       7


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+|...|++++|.|+| .-|++|+.|++.++||+|....    +..+..           .....+|++++||-.|++|.
T Consensus       226 ~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~----~a~ys~-----------~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  226 EGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE----LAVYSH-----------DSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             cccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE----Eeeecc-----------CcccCCceeEEEcccccEEE
Confidence            9999999999999999 9999999999999999998754    244433           11135899999999999999


Q ss_pred             Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +|. |..+.+||.-+ ++.+..+.+|++.+               .++..+|||.-++|||+|.++
T Consensus       290 agy~d~~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  290 AGYDDFTCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             eeecCCceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhHhe
Confidence            985 59999999875 88899999999987               699999999999999999875

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-41  Score=272.02  Aligned_cols=347  Identities=57%  Similarity=0.902  Sum_probs=295.1

Q ss_pred             hccccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccC
Q 015290            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (409)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (409)
                      ++..+.|++.|.++..     ++..+.|.+|.|.-+|.+||+|..+|+|.++.-.....                     
T Consensus         6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~---------------------   59 (433)
T KOG1354|consen    6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK---------------------   59 (433)
T ss_pred             cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc---------------------
Confidence            4456679999988763     55678999999999999999999999999998654432                     


Q ss_pred             CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccc
Q 015290           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (409)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (409)
                       .+|+....++.|+++|+++++++++..|..+.|++..+...++....|++|++|.+........ ..+...        
T Consensus        60 -~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~~--------  129 (433)
T KOG1354|consen   60 -GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLPE--------  129 (433)
T ss_pred             -cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccccc--------
Confidence             2788899999999999999999999999999998655667889999999999999986654431 111100        


Q ss_pred             ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEcc
Q 015290          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE  247 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~  247 (409)
                        .+              +.+....-..+.+-.++......|.+.+-.+|...|+++.++.|++.+++++|-.|.+|+++
T Consensus       130 --~~--------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnle  193 (433)
T KOG1354|consen  130 --EG--------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLE  193 (433)
T ss_pred             --cC--------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeecccc
Confidence              00              00000000122233334444567888888899999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                      ...+...++++++..+.....-|++..|+|..+++|+..+..|+|++-|+|...+|....+.++. ++.|..++.|.+..
T Consensus       194 i~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiI  272 (433)
T KOG1354|consen  194 IIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEII  272 (433)
T ss_pred             ccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHh
Confidence            99999999999999998888999999999999899999999999999999999999999899998 89999999999999


Q ss_pred             cceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ..|..+.|+++|+||++-+.-+|++||+.+..+++.+++.|.....+++++|+++|+|+-+.++|+-++.+++|||..+.
T Consensus       273 sSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~  352 (433)
T KOG1354|consen  273 SSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV  352 (433)
T ss_pred             hhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce
Confidence            99999999999999999988999999998888999999999999999999999999999999999999999999998754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-37  Score=243.13  Aligned_cols=292  Identities=15%  Similarity=0.162  Sum_probs=229.8

Q ss_pred             cccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+|.+.|+.++..+. .+.+++++.|.++.+|++......                      -..+++.+.||+     
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs-----   63 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS-----   63 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc-----
Confidence            3459999999999985 578899999999999999865431                      224577899999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ..|..+..  ++||++.++++.|+++++||+.+++..+.+..+..             .++....++++..+.
T Consensus        64 -------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~-------------dVlsva~s~dn~qiv  121 (315)
T KOG0279|consen   64 -------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK-------------DVLSVAFSTDNRQIV  121 (315)
T ss_pred             -------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecCC-------------ceEEEEecCCCceee
Confidence                   88999999  89999999999999999999999877666554332             345555666667777


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccc-cccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                      +|+.  |.++++|++-.    .|..+.... +...|+|+.|+|+  ..+++++ .|+++++||++ +-+....       
T Consensus       122 SGSr--DkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~~-------  187 (315)
T KOG0279|consen  122 SGSR--DKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRTT-------  187 (315)
T ss_pred             cCCC--cceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhhc-------
Confidence            7776  99999999875    455444222 3788999999998  6788888 99999999999 5555544       


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      +.+|.+.++.++++||| .+.++|+.||.+.+||++.++.+    ..+..              ...|.+++|+|+.-+|
T Consensus       188 ~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  188 FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWL  248 (315)
T ss_pred             cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeE
Confidence            78999999999999999 99999999999999999998742    33333              5689999999998888


Q ss_pred             EEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       343 ~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.+.+..|+|||+.+ +.++..++......  ........|    .+++|++||+.|++|-.|+.|
T Consensus       249 ~~at~~sIkIwdl~~-~~~v~~l~~d~~g~--s~~~~~~~c----lslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  249 CAATATSIKIWDLES-KAVVEELKLDGIGP--SSKAGDPIC----LSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             eeccCCceEEEeccc-hhhhhhcccccccc--ccccCCcEE----EEEEEcCCCcEEEeeecCCcE
Confidence            888888899999986 77776665332211  000011112    589999999999999999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.2e-38  Score=262.41  Aligned_cols=275  Identities=17%  Similarity=0.294  Sum_probs=228.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ....|++++|+.+|.+||+|+.||.++||+..+..                            +.+|..|.         
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------------------------~~tl~~Hk---------  276 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------------------------ISTLGQHK---------  276 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------------------------hhhhhccC---------
Confidence            35689999999999999999999999999987664                            45778888         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ++|.+|.|  +..|.+|++++.|+++.+||..++.....+.++..+             .+.+.|.....+..+.  
T Consensus       277 ---gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------~lDVdW~~~~~F~ts~--  336 (524)
T KOG0273|consen  277 ---GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------ALDVDWQSNDEFATSS--  336 (524)
T ss_pred             ---CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------ccceEEecCceEeecC--
Confidence               99999999  799999999999999999999999888776654332             2333333333333332  


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                       .++.|+++.+..   ..++.++ .+|.++|.+|.|+|.+..|+++ +|++++||... .......       +..|...
T Consensus       337 -td~~i~V~kv~~---~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~~-------l~~Hske  403 (524)
T KOG0273|consen  337 -TDGCIHVCKVGE---DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVHD-------LQAHSKE  403 (524)
T ss_pred             -CCceEEEEEecC---CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchhh-------hhhhccc
Confidence             388899998866   4566776 7899999999999999999999 99999999987 5555544       7889999


Q ss_pred             eEEEEEeCCCC--------CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          270 ITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       270 v~~~~~~p~~~--------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      |+.+.|+|.|+        ..+++++.|++|++||+..+..    +..             |..|..+|.+++|+|+|+|
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----i~~-------------f~kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----IHT-------------LMKHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----eEe-------------eccCCCceEEEEecCCCcE
Confidence            99999999873        3899999999999999988764    233             3445789999999999999


Q ss_pred             EEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       342 l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      +|+|+ ||.|.+|+.++ ++.++.+.+....                +.++|+.+|..|..+-.||.++
T Consensus       467 lAsGs~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vc  518 (524)
T KOG0273|consen  467 LASGSLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVC  518 (524)
T ss_pred             EEecCCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCce
Confidence            99998 69999999987 8999888876653                5999999999999999998764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-37  Score=247.15  Aligned_cols=286  Identities=14%  Similarity=0.210  Sum_probs=231.9

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|++.|+.+.|+|+|.+||+|+.|..|.+|++....+                          -...+++|.      
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs------   90 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS------   90 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc------
Confidence            345899999999999999999999999999999876553                          356788999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC--CCCCcee
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHG  185 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  185 (409)
                            ++|..+.|  .+|+..+++++.|++++.||.++++..+..+.+.              .++....  .....++
T Consensus        91 ------gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~--------------~~vNs~~p~rrg~~lv  148 (338)
T KOG0265|consen   91 ------GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT--------------SFVNSLDPSRRGPQLV  148 (338)
T ss_pred             ------ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeehhcccc--------------ceeeecCccccCCeEE
Confidence                  99999999  7999999999999999999999998877655332              1222111  1112333


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      .+++  .|+++++||+...   .+++++  ..+.+++++.|..++..+.+| -|+.|++||++ ......+       +.
T Consensus       149 ~Sgs--dD~t~kl~D~R~k---~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~-------ls  213 (338)
T KOG0265|consen  149 CSGS--DDGTLKLWDIRKK---EAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYT-------LS  213 (338)
T ss_pred             EecC--CCceEEEEeeccc---chhhcc--ccceeEEEEEecccccceeeccccCceeeeccc-cCcceEE-------ee
Confidence            4444  3899999999863   344443  456778999999999999999 99999999999 6666666       79


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|.+.|+.+..+|+| .++.+-+.|.++++||++........++++..|...         .......++|+|++.++.+
T Consensus       214 Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---------feknlL~cswsp~~~~i~a  283 (338)
T KOG0265|consen  214 GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---------FEKNLLKCSWSPNGTKITA  283 (338)
T ss_pred             cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh---------hhhhcceeeccCCCCcccc
Confidence            999999999999999 999999999999999998765444445566553211         1235677899999999999


Q ss_pred             ee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+ |..+++||... ...+..++||...+               .+++|+|...+|.+++.|++|
T Consensus       284 gs~dr~vyvwd~~~-r~~lyklpGh~gsv---------------n~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  284 GSADRFVYVWDTTS-RRILYKLPGHYGSV---------------NEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             ccccceEEEeeccc-ccEEEEcCCcceeE---------------EEeeecCCCcEEEEeccCcee
Confidence            97 59999999874 78999999999987               599999999999999999876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-38  Score=263.94  Aligned_cols=255  Identities=16%  Similarity=0.247  Sum_probs=215.7

Q ss_pred             cceeeehhccCCCCCccccCCCcEEEEEECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (409)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (409)
                      ..|+..++   .......+|.+.|.++.|+|.  +.-||+|+.||++++|++++..                        
T Consensus       200 kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~------------------------  252 (459)
T KOG0272|consen  200 KVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET------------------------  252 (459)
T ss_pred             eEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc------------------------
Confidence            34665554   123445569999999999995  6789999999999999998765                        


Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                         ++..+.+|.            ..|..++|  .|+|++|+|++.|.+-++||+.++......+.+.            
T Consensus       253 ---~l~~l~gH~------------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs------------  303 (459)
T KOG0272|consen  253 ---PLQDLEGHL------------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS------------  303 (459)
T ss_pred             ---chhhhhcch------------hhheeeee--cCCCceeeecccccchhhcccccchhhHhhcccc------------
Confidence               467889999            89999999  5899999999999999999999887655444332            


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                       ..++.+.+++++..+++|+.  |..-++||+.+   +.++..+ .+|..+|.+|+|+|+|-.|++| .|++++|||++ 
T Consensus       304 -~~v~~iaf~~DGSL~~tGGl--D~~~RvWDlRt---gr~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR-  375 (459)
T KOG0272|consen  304 -KGVFSIAFQPDGSLAATGGL--DSLGRVWDLRT---GRCIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR-  375 (459)
T ss_pred             -cccceeEecCCCceeeccCc--cchhheeeccc---CcEEEEe-cccccceeeEeECCCceEEeecCCCCcEEEeeec-
Confidence             34677788888999999888  88999999987   6777766 8999999999999999999999 99999999999 


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ....+.+       +++|.+-|+.+.|+|...++|++++.|++++||..++...    ++.+             .||.+
T Consensus       376 ~r~~ly~-------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~----~ksL-------------aGHe~  431 (459)
T KOG0272|consen  376 MRSELYT-------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP----LKSL-------------AGHEG  431 (459)
T ss_pred             cccccee-------cccccchhhheEecccCCeEEEEcccCcceeeecCCCccc----chhh-------------cCCcc
Confidence            5555655       7999999999999995449999999999999999888654    2444             45688


Q ss_pred             ceeeeEeccCCCEEEEee-cCeEEEEE
Q 015290          329 SISDIKFANDGQHLLSRD-YMNLKLWD  354 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd  354 (409)
                      .|.++++++|++++++++ |.++++|.
T Consensus       432 kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  432 KVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999998 69999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-37  Score=249.09  Aligned_cols=281  Identities=16%  Similarity=0.249  Sum_probs=234.9

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|..+|+.+.|+|+...+++++.|++|++||..+++                           +...++||+      
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~---------------------------~e~~LrGHt------  150 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE---------------------------LERSLRGHT------  150 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchh---------------------------hhhhhhccc------
Confidence            44589999999999999999999999999999999887                           357789999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|.+|+|  +..|+++++++.|=.+++||..+..............+.++.+.+....++++.          
T Consensus       151 ------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s----------  212 (406)
T KOG0295|consen  151 ------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS----------  212 (406)
T ss_pred             ------cceeEEEE--ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc----------
Confidence                  88999999  689999999999999999999864222222233344455555555543333333          


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                        .  |.+|+.|++.+   +.|+.+| .+|...|..++.+.||..++++ .|.++++|-+. ++++...       +..|
T Consensus       213 --r--D~tik~We~~t---g~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~-t~~~k~~-------lR~h  276 (406)
T KOG0295|consen  213 --R--DNTIKAWECDT---GYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA-TKQCKAE-------LREH  276 (406)
T ss_pred             --c--ccceeEEeccc---ceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEec-cchhhhh-------hhcc
Confidence              2  88999999987   7888888 8999999999999999999999 99999999999 6766655       6889


Q ss_pred             cCceEEEEEeCCC--------------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          267 TEVITSAEFHPIY--------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       267 ~~~v~~~~~~p~~--------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      ..+|.+++|.|..              .+++.+++.|++|++||+.++..      ++..           .+|..+|..
T Consensus       277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c------L~tL-----------~ghdnwVr~  339 (406)
T KOG0295|consen  277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC------LFTL-----------VGHDNWVRG  339 (406)
T ss_pred             ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE------EEEE-----------ecccceeee
Confidence            9999999997631              25999999999999999999852      3332           567899999


Q ss_pred             eEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       333 ~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|+|.|+||+++.| +++++||++. +++..++..|+..+               ++++|+.+..+++||+-|.++
T Consensus       340 ~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfv---------------t~lDfh~~~p~VvTGsVdqt~  400 (406)
T KOG0295|consen  340 VAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFV---------------TSLDFHKTAPYVVTGSVDQTV  400 (406)
T ss_pred             eEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCccee---------------EEEecCCCCceEEecccccee
Confidence            999999999999976 9999999986 99999999999886               699999999999999998765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-35  Score=252.17  Aligned_cols=298  Identities=19%  Similarity=0.305  Sum_probs=222.2

Q ss_pred             cceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce
Q 015290           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (409)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (409)
                      ++|||+..+++        |...|.|+.|+|||+++|+++.||.|.+||-.+++.                         
T Consensus       178 PPFKFk~s~r~--------HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-------------------------  224 (603)
T KOG0318|consen  178 PPFKFKSSFRE--------HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-------------------------  224 (603)
T ss_pred             CCeeeeecccc--------cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-------------------------
Confidence            35677777666        899999999999999999999999999999998874                         


Q ss_pred             eeeeeec---CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc
Q 015290           92 RYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (409)
Q Consensus        92 ~~~~~~~---~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (409)
                        +..+.   +|.            +.|.+|+|  +||++.|++++.|++++|||+.+.++.+.......          
T Consensus       225 --vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~----------  278 (603)
T KOG0318|consen  225 --VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST----------  278 (603)
T ss_pred             --EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCc----------
Confidence              45555   777            99999999  89999999999999999999999988776553322          


Q ss_pred             cccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEcc
Q 015290          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  247 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~  247 (409)
                      .+...+.+.+..  ..+.+.+.  +|.+.+++.....   +++.+ .+|...|++++.+|++++|++| .||.|.-|+..
T Consensus       279 v~dqqvG~lWqk--d~lItVSl--~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  279 VEDQQVGCLWQK--DHLITVSL--SGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             hhceEEEEEEeC--CeEEEEEc--CcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence            223334444431  22222222  6788888876633   55555 8999999999999999999999 99999999986


Q ss_pred             CCCcee-------------------------------eeeecCCCcCcC-------------------------------
Q 015290          248 ISDQCF-------------------------------NIVDMKPSNMDD-------------------------------  265 (409)
Q Consensus       248 ~~~~~~-------------------------------~~~~~~~~~~~~-------------------------------  265 (409)
                      . +..-                               +.++++...+..                               
T Consensus       351 ~-g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv  429 (603)
T KOG0318|consen  351 S-GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV  429 (603)
T ss_pred             C-ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence            3 2111                               111110000000                               


Q ss_pred             ------------ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290          266 ------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (409)
Q Consensus       266 ------------~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  333 (409)
                                  -.....+++++|++ ..++.|+.|+.|++|.+....++..               .....|.++|+.+
T Consensus       430 ~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee---------------~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  430 LLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEE---------------AKLLEHRAAITDV  493 (603)
T ss_pred             EEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccce---------------eeeecccCCceEE
Confidence                        01123577889998 9999999999999999887654211               0123457899999


Q ss_pred             EeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          334 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       334 ~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|||+.|||+|+. +.+.+||+.+.......+..|...+               .+++|+|+..++||||-|-+|
T Consensus       494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI---------------~~~aWsP~n~~vATGSlDt~V  554 (603)
T KOG0318|consen  494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI---------------NCVAWSPNNKLVATGSLDTNV  554 (603)
T ss_pred             EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE---------------EEEEeCCCceEEEeccccceE
Confidence            99999999999986 9999999986333334455576655               699999999999999999765

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.9e-37  Score=273.75  Aligned_cols=260  Identities=21%  Similarity=0.299  Sum_probs=212.9

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccc-hhhhhhhcccccc--cC-CCceeeeeeecCCCcccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI-SRSELEKQMDFTS--TS-HPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ...++|..|++|+++||.|-.|..|++|.+...+...+.+. -+..+...+..+.  -. ..+-....++.||+      
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------  451 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------  451 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence            46799999999999999999999999999986442211111 1112211111110  00 11122344588999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ++|....|  +|+.++|++|+.|+++|+|.+.+.....                                    
T Consensus       452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V------------------------------------  487 (707)
T KOG0263|consen  452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------------  487 (707)
T ss_pred             ------Cceeeeee--cccccceeeccCCcceeeeecccceeEE------------------------------------
Confidence                  99999999  7999999999999999999998864433                                    


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                              .+ .+|..+|..+.|+|.|-++|++ .|++.++|... ...++++       +.+|
T Consensus       488 ------------------------~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fagh  534 (707)
T KOG0263|consen  488 ------------------------IY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FAGH  534 (707)
T ss_pred             ------------------------Ee-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hccc
Confidence                                    23 7899999999999999999999 99999999998 6667766       7899


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      -+.|.|+.|+|+. .|+++||.|.++++||..+|..    +++             |.||.++|.+++|||+|++|++|+
T Consensus       535 lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRi-------------F~GH~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  535 LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRI-------------FTGHKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             ccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEE-------------ecCCCCceEEEEEcCCCceEeecc
Confidence            9999999999999 9999999999999999998864    233             556789999999999999999998


Q ss_pred             c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      + +.|.+||+.. ++.+..+.+|.+.+               .++.||.||..||+|+.|++|
T Consensus       597 ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  597 EDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             cCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeE
Confidence            6 9999999986 89999999997776               699999999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.5e-36  Score=243.01  Aligned_cols=292  Identities=15%  Similarity=0.239  Sum_probs=237.2

Q ss_pred             ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (409)
                      .||+.++++.        |.+-|.|+++.|-.++|++|+.|++|+|||+.+++                           
T Consensus       140 pwKl~rVi~g--------HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~---------------------------  184 (460)
T KOG0285|consen  140 PWKLYRVISG--------HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ---------------------------  184 (460)
T ss_pred             cceehhhhhh--------ccceEEEEeeCCCceeEEecCCCceeEEEEcccCe---------------------------
Confidence            4888888776        99999999999999999999999999999999988                           


Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                      +..++.||.            ..|..+++  |+-..|+++++.|+.|+.||+..++.++.+..+.+.             
T Consensus       185 LkltltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~-------------  237 (460)
T KOG0285|consen  185 LKLTLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG-------------  237 (460)
T ss_pred             EEEeecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------
Confidence            467889999            89999999  788889999999999999999988877765544332             


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                      +.....+|....+.+++.  |.++|+||+.+   ...+..+ .+|..+|..+.+.|....+++| .|++|++||++ .++
T Consensus       238 V~~L~lhPTldvl~t~gr--Dst~RvWDiRt---r~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~-agk  310 (460)
T KOG0285|consen  238 VYCLDLHPTLDVLVTGGR--DSTIRVWDIRT---RASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR-AGK  310 (460)
T ss_pred             eEEEeccccceeEEecCC--cceEEEeeecc---cceEEEe-cCCCCcceeEEeecCCCceEEecCCceEEEeeec-cCc
Confidence            444555666677777766  99999999987   3445555 8999999999999988899999 99999999999 666


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                      ...+       +..|...+.+++.+|.. ..||+++.|. |+-|++..+..+    ..             +.+|.+-|+
T Consensus       311 t~~t-------lt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~f~----~n-------------lsgh~~iin  364 (460)
T KOG0285|consen  311 TMIT-------LTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGEFL----QN-------------LSGHNAIIN  364 (460)
T ss_pred             eeEe-------eecccceeeEEecCCch-hhhhccCCcc-ceeccCCccchh----hc-------------cccccceee
Confidence            5555       67899999999999998 9999999886 899999887643    22             345678899


Q ss_pred             eeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       332 ~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +++...|| ++++|+| |.+.+||.++ +...+....-..+..       .++..+|++.+|...|..|++|..|.+|
T Consensus       365 tl~~nsD~-v~~~G~dng~~~fwdwks-g~nyQ~~~t~vqpGS-------l~sEagI~as~fDktg~rlit~eadKtI  433 (460)
T KOG0285|consen  365 TLSVNSDG-VLVSGGDNGSIMFWDWKS-GHNYQRGQTIVQPGS-------LESEAGIFASCFDKTGSRLITGEADKTI  433 (460)
T ss_pred             eeeeccCc-eEEEcCCceEEEEEecCc-CcccccccccccCCc-------cccccceeEEeecccCceEEeccCCcce
Confidence            99999887 6777777 9999999986 655554432222211       1123345799999999999999999987

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=228.52  Aligned_cols=271  Identities=16%  Similarity=0.221  Sum_probs=219.0

Q ss_pred             CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (409)
Q Consensus        44 ~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (409)
                      .-+||+++.|.+|++|...++.                           +..+++-..            ..|+.+..  
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~---------------------------C~rTiqh~d------------sqVNrLei--   48 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGI---------------------------CSRTIQHPD------------SQVNRLEI--   48 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCe---------------------------EEEEEecCc------------cceeeEEE--
Confidence            3589999999999999999887                           566666655            78999999  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (409)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (409)
                      .|+++.|++++. -.||+||++++.......           +......+....+..++.++++++-  ||+++|||+..
T Consensus        49 Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t-----------~e~h~kNVtaVgF~~dgrWMyTgse--Dgt~kIWdlR~  114 (311)
T KOG0315|consen   49 TPDKKDLAAAGN-QHVRLYDLNSNNPNPVAT-----------FEGHTKNVTAVGFQCDGRWMYTGSE--DGTVKIWDLRS  114 (311)
T ss_pred             cCCcchhhhccC-CeeEEEEccCCCCCceeE-----------EeccCCceEEEEEeecCeEEEecCC--CceEEEEeccC
Confidence            799999988886 469999999876544332           2334456777778888899999886  99999999987


Q ss_pred             cccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCE
Q 015290          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (409)
Q Consensus       204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  282 (409)
                         ..+.+.|  .|..+|+++..+|+...|++| ++|.|++||+. ...+...+      ++.-...|.++...|+| .+
T Consensus       115 ---~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~~~~i~sl~v~~dg-sm  181 (311)
T KOG0315|consen  115 ---LSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPEDDTSIQSLTVMPDG-SM  181 (311)
T ss_pred             ---cccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCCCcceeeEEEcCCC-cE
Confidence               4455544  577999999999999999999 99999999999 44444332      45555789999999999 99


Q ss_pred             EEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcc
Q 015290          283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  361 (409)
Q Consensus       283 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~  361 (409)
                      ++.+...|...+|++-+....    ..+.       +...|..|.+.+..+.+|||++|||+++ |.+++||+.+..-+.
T Consensus       182 l~a~nnkG~cyvW~l~~~~~~----s~l~-------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  182 LAAANNKGNCYVWRLLNHQTA----SELE-------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             EEEecCCccEEEEEccCCCcc----ccce-------EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence            999999999999999774321    1111       1233677889999999999999999986 699999999853366


Q ss_pred             eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      -..+++|+.++               ++++||.||+||++|+.|+.+
T Consensus       251 e~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  251 ELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             EEEeecCCceE---------------EeeeeccCccEEEecCCCCce
Confidence            67788999887               799999999999999999764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-37  Score=246.63  Aligned_cols=357  Identities=49%  Similarity=0.773  Sum_probs=288.8

Q ss_pred             ccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCc
Q 015290           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (409)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (409)
                      ...|++.|+|+.+..+......+.|++|.|.-.|.|||+|...|+|.+|.-+...                      +.+
T Consensus         5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~ce   62 (460)
T COG5170           5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCE   62 (460)
T ss_pred             hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc----------------------ccc
Confidence            3469999999999888888889999999999999999999999999999866433                      236


Q ss_pred             eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc
Q 015290           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (409)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (409)
                      |+..++|++|+.+|+|+++++++..|..|.|+....-..++..+.|++|++|.+....+....+.+....+...    ..
T Consensus        63 ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~----~~  138 (460)
T COG5170          63 YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSP----MG  138 (460)
T ss_pred             hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccc----cC
Confidence            78899999999999999999999999999997423335688889999999999988766554433322211100    00


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCC
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~  250 (409)
                      +.+.+..    ...++-.+ ..+..|         ...+.+.+...|...++++.++.|.+.+++++|-.|.+|++....
T Consensus       139 g~~~s~~----~l~lprls-~hd~ii---------aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D  204 (460)
T COG5170         139 GPLTSTK----ELLLPRLS-EHDEII---------AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID  204 (460)
T ss_pred             CCcCCHH----Hhhccccc-ccceEE---------EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccC
Confidence            1000000    00000000 000001         012333444789999999999999999999999999999999888


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      .+..++++++..+.....-|++..|+|..++.|...+..|.|++-|+|...+|....+.++. ...+.....|.+....|
T Consensus       205 ~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSI  283 (460)
T COG5170         205 GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSI  283 (460)
T ss_pred             CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhh
Confidence            99999999998888888899999999998789999999999999999999888888788877 67777778888888999


Q ss_pred             eeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          331 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..+.|+++|+|+++-+..+|+|||.++...++.++.-|.....+++++|+++++|+-+.+.||.|.+.+.+||..+..
T Consensus       284 SD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf  361 (460)
T COG5170         284 SDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF  361 (460)
T ss_pred             cceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence            999999999999999889999999999889999999999999999999999999999999999999999999987654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.7e-35  Score=227.68  Aligned_cols=266  Identities=17%  Similarity=0.267  Sum_probs=213.0

Q ss_pred             cccC-CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQD-VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h-~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .++| +..|+.+...||+++||+|+.. .|++||+.+....                         ++.++.+|.     
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------------------------Pv~t~e~h~-----   83 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------------------------PVATFEGHT-----   83 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-------------------------ceeEEeccC-----
Confidence            3455 5689999999999999999864 7999999987642                         688999999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             +.|+++.|  ..+|+.+++|+.||+++|||++...+.+.+.  +..++.++...+.+..++++..        
T Consensus        84 -------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis~dq--------  144 (311)
T KOG0315|consen   84 -------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELISGDQ--------  144 (311)
T ss_pred             -------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEeecC--------
Confidence                   89999999  6899999999999999999999866655544  3456666666666666666654        


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                            +|.|++||+...   .|...+.....-.|.++++.|||.+++.+ ..|+.++|++-. ......+ .+...++.
T Consensus       145 ------sg~irvWDl~~~---~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~-~~~~s~l-~P~~k~~a  213 (311)
T KOG0315|consen  145 ------SGNIRVWDLGEN---SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN-HQTASEL-EPVHKFQA  213 (311)
T ss_pred             ------CCcEEEEEccCC---ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC-CCccccc-eEhhheec
Confidence                  789999999763   33333334556789999999999999999 999999999973 3222111 22245789


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |.+.+..+.+||++ ++||++|.|.+++||+..+- .  +....             +.+|..+++.++||.||+||++|
T Consensus       214 h~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~--kle~~-------------l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  214 HNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-F--KLELV-------------LTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             ccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-e--eeEEE-------------eecCCceEEeeeeccCccEEEec
Confidence            99999999999999 99999999999999998874 1  00122             34567899999999999999999


Q ss_pred             e-cCeEEEEEccCCCcceEEEecccCcc
Q 015290          346 D-YMNLKLWDIRMDSTPVATFKIHEHLR  372 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~  372 (409)
                      + |+.+++||+.. ++.+..+.+|....
T Consensus       277 ssd~~~rlW~~~~-~k~v~qy~gh~K~~  303 (311)
T KOG0315|consen  277 SSDHTARLWDLSA-GKEVRQYQGHHKAA  303 (311)
T ss_pred             CCCCceeeccccc-CceeeecCCccccc
Confidence            6 59999999986 89999999988763

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=227.23  Aligned_cols=253  Identities=19%  Similarity=0.284  Sum_probs=192.5

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|...|..+..++||++.++++.|+++++||+.+++                           ..+.|.||.      
T Consensus        59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~---------------------------~t~~f~GH~------  105 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE---------------------------STRRFVGHT------  105 (315)
T ss_pred             eeccceEecceEEccCCceEEeccccceEEEEEecCCc---------------------------EEEEEEecC------
Confidence            34599999999999999999999999999999999886                           467899999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.+++|  ++|...+++|+.|++|++|+..+.............=+.|+.|.+.+          ...++.+
T Consensus       106 ------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~----------~~p~Ivs  167 (315)
T KOG0279|consen  106 ------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE----------SNPIIVS  167 (315)
T ss_pred             ------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC----------CCcEEEE
Confidence                  89999999  89999999999999999999987654443322113334444444442          1344444


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  |+++++||+++   .+....+ .+|.+.++.++++|||..+++| .||.+.+||++ .++.+..        .+|
T Consensus       168 ~s~--DktvKvWnl~~---~~l~~~~-~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~-~~k~lys--------l~a  232 (315)
T KOG0279|consen  168 ASW--DKTVKVWNLRN---CQLRTTF-IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN-EGKNLYS--------LEA  232 (315)
T ss_pred             ccC--CceEEEEccCC---cchhhcc-ccccccEEEEEECCCCCEEecCCCCceEEEEEcc-CCceeEe--------ccC
Confidence            444  99999999987   3444444 8999999999999999999999 99999999999 5665554        457


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|.+++|+|+. ..|+ ...+..|+|||+.++...    ..+.....++    ....-.....+++|++||+.|++|-
T Consensus       233 ~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~~~~v----~~l~~d~~g~----s~~~~~~~clslaws~dG~tLf~g~  302 (315)
T KOG0279|consen  233 FDIVNSLCFSPNR-YWLC-AATATSIKIWDLESKAVV----EELKLDGIGP----SSKAGDPICLSLAWSADGQTLFAGY  302 (315)
T ss_pred             CCeEeeEEecCCc-eeEe-eccCCceEEEeccchhhh----hhcccccccc----ccccCCcEEEEEEEcCCCcEEEeee
Confidence            8899999999985 4444 445566999999987642    2222100011    1111133567899999999999995


Q ss_pred             -cCeEEEEEcc
Q 015290          347 -YMNLKLWDIR  356 (409)
Q Consensus       347 -~~~v~iwd~~  356 (409)
                       |+.|++|.+.
T Consensus       303 td~~irv~qv~  313 (315)
T KOG0279|consen  303 TDNVIRVWQVA  313 (315)
T ss_pred             cCCcEEEEEee
Confidence             6999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.8e-36  Score=246.73  Aligned_cols=275  Identities=18%  Similarity=0.307  Sum_probs=221.5

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      +..|..|.|.|+|+.|++|+..|.+.+|+..+-                           ..-..++.|.          
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------nFEtilQaHD----------  138 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------NFETILQAHD----------  138 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------eHHHHhhhhc----------
Confidence            458999999999999999999999999997432                           2234578888          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        .+|+++.|  ++++..+++|+.+|.|++|+.+-...+ ....+....|.++.|++.+..++++..             
T Consensus       139 --s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~Sd-------------  200 (464)
T KOG0284|consen  139 --SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSD-------------  200 (464)
T ss_pred             --ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecC-------------
Confidence              89999999  799999999999999999998755443 333333455566666665555555543             


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                       |+.|+|||.....+...   + .+|.-.|.+++|+|....+++| .|..|++||.+ ++.++.+       +.+|+..|
T Consensus       201 -Dg~ikiWdf~~~kee~v---L-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~t-------lh~HKntV  267 (464)
T KOG0284|consen  201 -DGTIKIWDFRMPKEERV---L-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLAT-------LHGHKNTV  267 (464)
T ss_pred             -CCeEEEEeccCCchhhe---e-ccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhh-------hhhccceE
Confidence             89999999976443333   2 7999999999999999999999 99999999999 7888877       78999999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-cC
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YM  348 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~~  348 (409)
                      ..+.|+|++ ++|+++|.|..++++|+++-+.    +..             +.+|...+++++|+|-. .+|++|+ ||
T Consensus       268 l~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~-------------~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  268 LAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFT-------------YRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             EEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHH-------------hhcchhhheeeccccccccceeeccCCC
Confidence            999999999 9999999999999999995332    122             35567899999999965 4556665 69


Q ss_pred             eEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|..|.+.. .+++..+ .+|...+               ++++|+|=|..|++|+.|.++
T Consensus       330 svvh~~v~~-~~p~~~i~~AHd~~i---------------wsl~~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  330 SVVHWVVGL-EEPLGEIPPAHDGEI---------------WSLAYHPLGHILATGSNDRTV  374 (464)
T ss_pred             ceEEEeccc-cccccCCCcccccce---------------eeeeccccceeEeecCCCcce
Confidence            999999974 4554444 3566655               899999999999999999876

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.2e-35  Score=258.72  Aligned_cols=203  Identities=20%  Similarity=0.382  Sum_probs=182.4

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ...+|.++|..+.|+|+.++|++|+.|++||+|.+.+..                           ++..++||.     
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---------------------------~~V~y~GH~-----  493 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---------------------------CLVIYKGHL-----  493 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccce---------------------------eEEEecCCC-----
Confidence            356799999999999999999999999999999999765                           577889999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             .+|+.+.|  +|-|-+|||++.|++.++|.......                                     
T Consensus       494 -------~PVwdV~F--~P~GyYFatas~D~tArLWs~d~~~P-------------------------------------  527 (707)
T KOG0263|consen  494 -------APVWDVQF--APRGYYFATASHDQTARLWSTDHNKP-------------------------------------  527 (707)
T ss_pred             -------cceeeEEe--cCCceEEEecCCCceeeeeecccCCc-------------------------------------
Confidence                   89999999  78999999999999999999876533                                     


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                                             .+.| .+|.+.|.|++|+|+..++++| .|.++++||+. ++..+++       +.|
T Consensus       528 -----------------------lRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRi-------F~G  575 (707)
T KOG0263|consen  528 -----------------------LRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRI-------FTG  575 (707)
T ss_pred             -----------------------hhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEE-------ecC
Confidence                                   3333 7899999999999999999999 99999999999 8888888       799


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |.++|.+++|+|+| .+|++|+.||.|.+||+.++++    +..+             .+|.+.|.++.|+.||..||+|
T Consensus       576 H~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~----v~~l-------------~~Ht~ti~SlsFS~dg~vLasg  637 (707)
T KOG0263|consen  576 HKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSL----VKQL-------------KGHTGTIYSLSFSRDGNVLASG  637 (707)
T ss_pred             CCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcc----hhhh-------------hcccCceeEEEEecCCCEEEec
Confidence            99999999999999 9999999999999999999875    2333             4457899999999999999998


Q ss_pred             e-cCeEEEEEccC
Q 015290          346 D-YMNLKLWDIRM  357 (409)
Q Consensus       346 ~-~~~v~iwd~~~  357 (409)
                      + |++|++||+..
T Consensus       638 g~DnsV~lWD~~~  650 (707)
T KOG0263|consen  638 GADNSVRLWDLTK  650 (707)
T ss_pred             CCCCeEEEEEchh
Confidence            7 59999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-33  Score=249.11  Aligned_cols=309  Identities=15%  Similarity=0.238  Sum_probs=224.8

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      .+..+|...+++++++|||+++|+|+.||.|+|||...+-                           |..+|..|+    
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---------------------------C~vTFteHt----  392 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---------------------------CFVTFTEHT----  392 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce---------------------------EEEEeccCC----
Confidence            3455699999999999999999999999999999998776                           688999999    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc-CCCCCce
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH-NPPSFAH  184 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  184 (409)
                              ..|+.+.|  +..|+.+++++.||+|+.||+...+.-+.+......             -+++. ..+++..
T Consensus       393 --------s~Vt~v~f--~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-------------QfscvavD~sGel  449 (893)
T KOG0291|consen  393 --------SGVTAVQF--TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-------------QFSCVAVDPSGEL  449 (893)
T ss_pred             --------CceEEEEE--EecCCEEEEeecCCeEEeeeecccceeeeecCCCce-------------eeeEEEEcCCCCE
Confidence                    89999999  689999999999999999999887766554422222             22222 2233333


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      +..|.. ..-.|.+|++++   ++.+..+ .+|.++|.+++|+|.+..|+++ .|.+|++||+-.......++       
T Consensus       450 V~AG~~-d~F~IfvWS~qT---GqllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-------  517 (893)
T KOG0291|consen  450 VCAGAQ-DSFEIFVWSVQT---GQLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-------  517 (893)
T ss_pred             EEeecc-ceEEEEEEEeec---Ceeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-------
Confidence            333333 122899999987   6666665 8999999999999999999999 99999999998444444442       


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccc---ccCCccccc----ccccceeeeEec
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE---SHGSKSFFT----EIIASISDIKFA  336 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~i~~~~~s  336 (409)
                       .+...+..++|.|+| +-++++..||.|.+||...+...    ...++..+   +......+.    ......+.+++|
T Consensus       518 -~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~----~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS  591 (893)
T KOG0291|consen  518 -EIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQV----GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS  591 (893)
T ss_pred             -eeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceee----ccccchhhccccccccceeehhhcccCCceEEEEEc
Confidence             245678999999999 99999999999999999876432    11111000   000111111    123578999999


Q ss_pred             cCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcc-------------cc-----ccccc------------------
Q 015290          337 NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR-------------PK-----LCDLY------------------  379 (409)
Q Consensus       337 ~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~-------------~~-----~~~~~------------------  379 (409)
                      +||.+|++|+. +.|+|||+.. +-.++.+.-..+.-             ..     +.+..                  
T Consensus       592 aDG~~IlAgG~sn~iCiY~v~~-~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~g  670 (893)
T KOG0291|consen  592 ADGKCILAGGESNSICIYDVPE-GVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRG  670 (893)
T ss_pred             CCCCEEEecCCcccEEEEECch-hheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccC
Confidence            99999999987 9999999985 65565554211110             00     00000                  


Q ss_pred             -----CCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          380 -----NNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       380 -----~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                           .-.....|+++.|||.|+-+|.++..|-
T Consensus       671 dlssRr~rpeIrv~sv~fsPtgraFAaatTEGl  703 (893)
T KOG0291|consen  671 DLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGL  703 (893)
T ss_pred             CccccccCceEEEEEEEECCCcCeeeeecccce
Confidence                 0011445789999999999999888773

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=222.21  Aligned_cols=249  Identities=16%  Similarity=0.207  Sum_probs=206.3

Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                      .++..+.|+||.            +.|.++.|  ++|+++|++++.||.+.|||..+......++             .+
T Consensus        44 ~~~~rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haip-------------l~   96 (343)
T KOG0286|consen   44 QMRTRRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIP-------------LP   96 (343)
T ss_pred             eeeeEEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEe-------------cC
Confidence            345567899999            99999999  7999999999999999999987765444332             23


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCc--ccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~  246 (409)
                      ..-+..+.++|++.++++|+.  |+...+|++.+.  .....+...+.+|.+.+.|..|-+|+ .|+++ .|.++.+||+
T Consensus        97 s~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI  173 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCc--CceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc
Confidence            456778899999999999998  888888888754  22223333348999999999998855 67787 9999999999


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeC-CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      + +++.+..       +.+|.+.|.+++++| ++ +.|++|+.|+..++||+|.+..    .+.             |.+
T Consensus       174 e-~g~~~~~-------f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c----~qt-------------F~g  227 (343)
T KOG0286|consen  174 E-TGQQTQV-------FHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQC----VQT-------------FEG  227 (343)
T ss_pred             c-cceEEEE-------ecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCcce----eEe-------------ecc
Confidence            9 7777776       789999999999999 66 9999999999999999999753    233             556


Q ss_pred             cccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      |...|+++.|.|+|.-+++|+| ++.|+||++. .+.+..|. |..            .+++|++++||..|++|.+|..
T Consensus       228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SGRlLfagy~  293 (343)
T KOG0286|consen  228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSGRLLFAGYD  293 (343)
T ss_pred             cccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccccEEEeeec
Confidence            6889999999999999999987 9999999997 67777776 333            2456689999999999999988


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      |.++
T Consensus       294 d~~c  297 (343)
T KOG0286|consen  294 DFTC  297 (343)
T ss_pred             CCce
Confidence            8765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.1e-33  Score=245.11  Aligned_cols=290  Identities=17%  Similarity=0.269  Sum_probs=224.1

Q ss_pred             CCcEEEEEECCCCCEEEEEecC-CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+|..++|+..|.+||.|+.. |.+.||+.+...                           ++...++|.         
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~---------  350 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHS---------  350 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeeccccc---------
Confidence            4689999999999999998754 899999998765                           566789999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..++++++  +|||+++++|+.||.|+|||...+-+...+..+.             ..+....+...+..+.+.+.
T Consensus       351 ---~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-------------s~Vt~v~f~~~g~~llssSL  412 (893)
T KOG0291|consen  351 ---DRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-------------SGVTAVQFTARGNVLLSSSL  412 (893)
T ss_pred             ---cceeeEEE--CCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-------------CceEEEEEEecCCEEEEeec
Confidence               89999999  8999999999999999999999887766554332             22333333333444444444


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC-CeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                        ||+||.||+..   ..+.++|.........|++..|.|..+.+| .| -.|.+|+++ +++.+.+       +.+|.+
T Consensus       413 --DGtVRAwDlkR---YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDi-------LsGHEg  479 (893)
T KOG0291|consen  413 --DGTVRAWDLKR---YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDI-------LSGHEG  479 (893)
T ss_pred             --CCeEEeeeecc---cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeeh-------hcCCCC
Confidence              99999999965   667777755666778899999999999888 44 579999999 8998887       799999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      +|.+++|+|.+ ..|+++|.|.+|++||+-.....   ...++.              ...+..++|+|||+-||+++ |
T Consensus       480 PVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i--------------~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  480 PVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEI--------------RSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             cceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEee--------------ccceeEEEEcCCCCeEEEEEec
Confidence            99999999999 99999999999999998664211   233333              45799999999999999987 6


Q ss_pred             CeEEEEEccCCCcceEEEecccCccccc--ccc-----cCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKL--CDL-----YNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      |.|.+||... +..+..+.+........  .+.     ......|  +.+++|+||..|++|+..+.|+
T Consensus       542 gqItf~d~~~-~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F--tti~ySaDG~~IlAgG~sn~iC  607 (893)
T KOG0291|consen  542 GQITFFDIKE-AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF--TTICYSADGKCILAGGESNSIC  607 (893)
T ss_pred             ceEEEEEhhh-ceeeccccchhhccccccccceeehhhcccCCce--EEEEEcCCCCEEEecCCcccEE
Confidence            9999999975 55555554433321110  000     0111222  7999999999999999988774

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=224.37  Aligned_cols=282  Identities=17%  Similarity=0.180  Sum_probs=226.2

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|++.|.+++.+|+.+++|||+.|....||+..+++                           ....+.+|.       
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------~~~eltgHK-------  106 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------FAGELTGHK-------  106 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---------------------------ceeEecCCC-------
Confidence            3499999999999999999999999999999999887                           367889999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|+++.|  +.+|.+|+||..+|.|+||+..++........             .-..+.-..+++...+++.|
T Consensus       107 -----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~-------------e~~dieWl~WHp~a~illAG  166 (399)
T KOG0296|consen  107 -----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-------------EVEDIEWLKWHPRAHILLAG  166 (399)
T ss_pred             -----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeec-------------ccCceEEEEecccccEEEee
Confidence                 89999999  89999999999999999999999887665431             22345566778877888888


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec------CCC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM------KPS  261 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~------~~~  261 (409)
                      ..  ||.+..|.+...   ...+.+ .+|..++++=.|.|+|+.++++ .||+|++||.. +++++..+..      +..
T Consensus       167 ~~--DGsvWmw~ip~~---~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k-tg~p~~~~~~~e~~~~~~~  239 (399)
T KOG0296|consen  167 ST--DGSVWMWQIPSQ---ALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK-TGQPLHKITQAEGLELPCI  239 (399)
T ss_pred             cC--CCcEEEEECCCc---ceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecC-CCceeEEecccccCcCCcc
Confidence            76  999999999764   333444 8999999999999999999999 99999999998 6666655441      100


Q ss_pred             c--------------------------------------CcCccCceEEEE---EeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          262 N--------------------------------------MDDLTEVITSAE---FHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       262 ~--------------------------------------~~~~~~~v~~~~---~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      .                                      ...+...+.++.   ++..- .++|+|+-||+|.|||+...
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccc
Confidence            0                                      001122222333   33333 57889999999999999876


Q ss_pred             cccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCccccccccc
Q 015290          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (409)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (409)
                      ++.    +.              ..|..+|..+.|-+ ..+|++++ +|.|+.||.++ |+++..+.+|...+       
T Consensus       319 ~~R----~~--------------c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~I-------  371 (399)
T KOG0296|consen  319 TLR----HI--------------CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTGHQMGI-------  371 (399)
T ss_pred             hhh----ee--------------ccCCCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEecCchhe-------
Confidence            531    22              22367899999999 67888776 59999999998 99999999999987       


Q ss_pred             CCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          380 NNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       380 ~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                              .+++++|++++++|+|.|++
T Consensus       372 --------l~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  372 --------LDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             --------eEEEEcCCCcEEEEecCCCe
Confidence                    69999999999999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.8e-34  Score=240.96  Aligned_cols=288  Identities=17%  Similarity=0.225  Sum_probs=225.1

Q ss_pred             CccccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           26 DEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      ....+|...|+++.|.| .+.+|++|+.|+.|+||++.+..                          ++++++.||.   
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------------------------~~lrtf~gH~---  258 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------------------------RCLRTFKGHR---  258 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------ceehhhhcch---
Confidence            34456999999999999 89999999999999999998743                          3789999999   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               .+|.+++|  +.+|..|++++.|++|++||+++|++...+....  .+.|+.+.+.+.           ..
T Consensus       259 ---------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~-----------n~  314 (503)
T KOG0282|consen  259 ---------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQ-----------NI  314 (503)
T ss_pred             ---------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecCC--CceeeecCCCCC-----------cE
Confidence                     99999999  8999999999999999999999998876654332  223333332221           23


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      +..|..  ++.|+.||+.+   ++.++.+ ..|-+.|..+.|-+++++++++ +|+++++|+.+ ....++.+      .
T Consensus       315 fl~G~s--d~ki~~wDiRs---~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~-~~v~ik~i------~  381 (503)
T KOG0282|consen  315 FLVGGS--DKKIRQWDIRS---GKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR-IPVPIKNI------A  381 (503)
T ss_pred             EEEecC--CCcEEEEeccc---hHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC-CCccchhh------c
Confidence            333333  89999999987   5566666 7889999999999999999999 99999999998 33333321      2


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ..+.....++..+|++ .+++.-+.|+.|.+|.+...- .....+.+++|..           .+.-..+.|||||.+|+
T Consensus       382 ~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~v-----------aGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  382 DPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSV-----------AGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             chhhccCcceecCCCC-CeehhhccCceEEEEeccccc-ccCHhhhhcceec-----------cCceeeEEEcCCCCeEE
Confidence            2233445689999999 999999999999999865421 1111234444211           24567799999999999


Q ss_pred             Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290          344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN  408 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i  408 (409)
                      +|+ +|.+.+||.++ .+.+..++.|....               ..+.|+|-. ..+|||+.||.|
T Consensus       449 SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G~I  499 (503)
T KOG0282|consen  449 SGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDGLI  499 (503)
T ss_pred             eecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCcee
Confidence            996 59999999987 89999999998775               589999964 579999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-33  Score=230.76  Aligned_cols=281  Identities=15%  Similarity=0.172  Sum_probs=224.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|+.+.||++|+|||+++.|.+..+|++....                        ..+...++.+|.         
T Consensus       223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~---------  269 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS---------  269 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc---------
Confidence            99999999999999999999999999999987654                        346788999999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         .+|..|.|  |||.++|++|+.|..+++||+.++.....+...            ......++.|.+++..+.+|+.
T Consensus       270 ---~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~------------~~~S~~sc~W~pDg~~~V~Gs~  332 (519)
T KOG0293|consen  270 ---QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG------------LGFSVSSCAWCPDGFRFVTGSP  332 (519)
T ss_pred             ---CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcccC------------cCCCcceeEEccCCceeEecCC
Confidence               89999999  899999999999999999999999876654422            1234567778888888888776


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        |+.+..||++...    ...........|.+++..+||+++++. .|..|++++.+ .......        .....+
T Consensus       333 --dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~l--------ise~~~  397 (519)
T KOG0293|consen  333 --DRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRGL--------ISEEQP  397 (519)
T ss_pred             --CCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhcc--------ccccCc
Confidence              8999999998633    222211223568999999999999998 99999999998 4333322        223467


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeec-
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-  347 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~-  347 (409)
                      |++++.+.++ +++++.-.+..+++||+...++    +..+.+|..+           .-+..-+|-- +..++|+|++ 
T Consensus       398 its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq~-----------~fiIrSCFgg~~~~fiaSGSED  461 (519)
T KOG0293|consen  398 ITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQG-----------HFIIRSCFGGGNDKFIASGSED  461 (519)
T ss_pred             eeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhccccc-----------ceEEEeccCCCCcceEEecCCC
Confidence            9999999999 9999988999999999987654    3444443221           2344445543 4589999985 


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i  408 (409)
                      +.|+||+..+ ++++.++.||...+               .+++|+|. -.++|++|+||+|
T Consensus       462 ~kvyIWhr~s-gkll~~LsGHs~~v---------------NcVswNP~~p~m~ASasDDgtI  507 (519)
T KOG0293|consen  462 SKVYIWHRIS-GKLLAVLSGHSKTV---------------NCVSWNPADPEMFASASDDGTI  507 (519)
T ss_pred             ceEEEEEccC-CceeEeecCCccee---------------eEEecCCCCHHHhhccCCCCeE
Confidence            9999999986 99999999999876               59999995 5689999999997

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-32  Score=215.31  Aligned_cols=286  Identities=13%  Similarity=0.129  Sum_probs=226.2

Q ss_pred             CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      ++...+|..+++.+.|+.+|.+|.+|+.|.++.||-..+++.                           +.++.||+   
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------lGty~GHt---   52 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------LGTYDGHT---   52 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce---------------------------eeeecCCC---
Confidence            345567999999999999999999999999999999887773                           68899999   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               +.|+|+..  +.+.+++++|+.|.++++||+.+|+.+...+..              ..+..+.++..+..
T Consensus        53 ---------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--------------~~Vk~~~F~~~gn~  107 (327)
T KOG0643|consen   53 ---------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--------------SPVKRVDFSFGGNL  107 (327)
T ss_pred             ---------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC--------------CeeEEEeeccCCcE
Confidence                     99999999  789999999999999999999999887765432              22334444444433


Q ss_pred             eeccc---ccccceeEEEecCCcc----cceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290          185 GYHLE---WTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       185 ~~~~~---~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (409)
                      +....   ....+.|.+++++...    ...+.... ..+...++.+-|.|-+++|++| .||.|..||.+...+.+.. 
T Consensus       108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-  185 (327)
T KOG0643|consen  108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS-  185 (327)
T ss_pred             EEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec-
Confidence            33222   1345578999988543    44555555 5677889999999999999999 9999999999943444444 


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                            ...|...|+.++++|+. .+|+++|.|.+-++||.++-+.    ++.+..              ..++++.+++
T Consensus       186 ------~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~t--------------e~PvN~aais  240 (327)
T KOG0643|consen  186 ------DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTT--------------ERPVNTAAIS  240 (327)
T ss_pred             ------hhhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeee--------------cccccceecc
Confidence                  56788899999999999 9999999999999999998654    466665              5689999999


Q ss_pred             cCCCEEEEee--c-CeEEE------------EEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          337 NDGQHLLSRD--Y-MNLKL------------WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       337 ~~g~~l~sg~--~-~~v~i------------wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      |...+++.|+  + ..|.-            |++-. .+.+..+++|-+++               .+++|+|||+..++
T Consensus       241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPI---------------NsvAfhPdGksYsS  304 (327)
T KOG0643|consen  241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPI---------------NSVAFHPDGKSYSS  304 (327)
T ss_pred             cccceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccCc---------------ceeEECCCCccccc
Confidence            9887777654  2 33332            33322 35677888999887               59999999999999


Q ss_pred             cccCCCC
Q 015290          402 GSYRRDN  408 (409)
Q Consensus       402 ~s~dg~i  408 (409)
                      |++||.|
T Consensus       305 GGEDG~V  311 (327)
T KOG0643|consen  305 GGEDGYV  311 (327)
T ss_pred             CCCCceE
Confidence            9999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-31  Score=232.89  Aligned_cols=277  Identities=22%  Similarity=0.336  Sum_probs=220.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|.++|++++|+|++++|++++.||.|++|++.++.                           ....+..|.        
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~--------   51 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHT--------   51 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCC--------
Confidence            489999999999999999999999999999998765                           245567787        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..+..+.|  .+++++|++++.|+.|++|++.+++.......+             ...+..+.+.+...+++.+.
T Consensus        52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~  112 (289)
T cd00200          52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTLTGH-------------TSYVSSVAFSPDGRILSSSS  112 (289)
T ss_pred             ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-------------CCcEEEEEEcCCCCEEEEec
Confidence                78899999  688889999999999999999876444332211             11233333444445555554


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                        .++.+++|++..   .+....+ ..|...+.+++|+|++.+++++ .++.|++||++ ..+....       +..|..
T Consensus       113 --~~~~i~~~~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~-------~~~~~~  178 (289)
T cd00200         113 --RDKTIKVWDVET---GKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVAT-------LTGHTG  178 (289)
T ss_pred             --CCCeEEEEECCC---cEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc-cccccee-------EecCcc
Confidence              378999999974   3445544 5788899999999999999888 69999999998 5555554       456778


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .+.++.|+|++ +.+++++.++.|++||++.++.    ...+.             .|...+.+++|+|++.++++++ +
T Consensus       179 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         179 EVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC----LGTLR-------------GHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             ccceEEECCCc-CEEEEecCCCcEEEEECCCCce----ecchh-------------hcCCceEEEEEcCCCcEEEEEcCC
Confidence            99999999999 8999999999999999987543    12222             2356899999999999999998 6


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.|++||+.. +++...+..|...+               .+++|+|++++|++++.||.|
T Consensus       241 ~~i~i~~~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         241 GTIRVWDLRT-GECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             CcEEEEEcCC-ceeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeE
Confidence            9999999986 77888888776654               699999999999999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=210.21  Aligned_cols=282  Identities=17%  Similarity=0.210  Sum_probs=222.1

Q ss_pred             ccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cCCCccccc
Q 015290           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY  106 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~  106 (409)
                      .+|.+.|..++|+|- |..||+|+.|+.|+||+...+.                        .+.+...+ .+|+     
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk-----   61 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK-----   61 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch-----
Confidence            348899999999997 8899999999999999988533                        34455444 4677     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ..|++++|  +|.|++|++|+.|.++.||.-..++......+.           -.+..+-...++.++.+++
T Consensus        62 -------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-----------GHEnEVK~Vaws~sG~~LA  121 (312)
T KOG0645|consen   62 -------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECVATLE-----------GHENEVKCVAWSASGNYLA  121 (312)
T ss_pred             -------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEEeeee-----------ccccceeEEEEcCCCCEEE
Confidence                   89999999  899999999999999999988766655443321           1234556677888889999


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC--ceeeeeecCCCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNM  263 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~~~  263 (409)
                      ..+.  |..|-+|.+....+..|...+ +.|...|..+.|+|....|+++ .|++|++|+-....  .+..+       +
T Consensus       122 TCSR--DKSVWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t-------l  191 (312)
T KOG0645|consen  122 TCSR--DKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT-------L  191 (312)
T ss_pred             EeeC--CCeEEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE-------e
Confidence            8887  999999999988888999887 9999999999999999999999 99999999876222  23444       7


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+|...|.+++|+|.| ..|++++.|++++||-....-      .  .             .|...+..+.|. + ..||
T Consensus       192 ~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~------~--~-------------~~sr~~Y~v~W~-~-~~Ia  247 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL------S--G-------------MHSRALYDVPWD-N-GVIA  247 (312)
T ss_pred             cCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc------c--h-------------hcccceEeeeec-c-cceE
Confidence            8899999999999999 999999999999999865421      1  1             124578889998 4 4777


Q ss_pred             Eee-cCeEEEEEccCC-Ccc-----eEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCC
Q 015290          344 SRD-YMNLKLWDIRMD-STP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDN  408 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i  408 (409)
                      +++ |+.|++|..... ..+     ...-..|+..               |.+++|.|. ..+|++|+.||.|
T Consensus       248 S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---------------VNsV~w~p~~~~~L~s~~DDG~v  305 (312)
T KOG0645|consen  248 SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---------------VNSVQWNPKVSNRLASGGDDGIV  305 (312)
T ss_pred             eccCCCEEEEEEecCCCCCchHHHHHhhhcccccc---------------cceEEEcCCCCCceeecCCCceE
Confidence            775 699999986531 011     1122234443               369999995 6799999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-32  Score=231.31  Aligned_cols=293  Identities=16%  Similarity=0.225  Sum_probs=224.2

Q ss_pred             ccccCCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      +.+.|..+|.+.+|+|-.. .+|+|+.|-..++|++......   +.....|++...              +-++.    
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~---~~~q~~lrh~~~--------------~~~~s----  231 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI---GSTQLVLRHCIR--------------EGGKS----  231 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc---cchhhhhhhhhh--------------hhccc----
Confidence            3445999999999999555 8999999999999998742110   111122221110              11111    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                          ...+..|++++|  +.+|..|++|+.||.+++|+.........              ....+.+++.-++..+.++
T Consensus       232 ----~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~tl--------------~~HkgPI~slKWnk~G~yi  291 (524)
T KOG0273|consen  232 ----VPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLISTL--------------GQHKGPIFSLKWNKKGTYI  291 (524)
T ss_pred             ----CCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhhh--------------hccCCceEEEEEcCCCCEE
Confidence                112268999999  79999999999999999999876543322              2234667888899999999


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      .+++.  |+++.+||..+   +...+.| .-|..+-..+.|-.+.. ++++ .|+.|+++.+. ...+..+       +.
T Consensus       292 lS~~v--D~ttilwd~~~---g~~~q~f-~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~-~~~P~~t-------~~  356 (524)
T KOG0273|consen  292 LSGGV--DGTTILWDAHT---GTVKQQF-EFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVG-EDRPVKT-------FI  356 (524)
T ss_pred             EeccC--CccEEEEeccC---ceEEEee-eeccCCccceEEecCce-EeecCCCceEEEEEec-CCCccee-------ee
Confidence            98887  99999999976   3444444 56777767788876654 5665 99999999998 5556655       67


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC----
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ----  340 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~----  340 (409)
                      +|.+.|.++.|+|.| .+|+++|.|++++||.+.....    ..-             +.+|...|..+.|+|+|.    
T Consensus       357 GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~-------------l~~Hskei~t~~wsp~g~v~~n  418 (524)
T KOG0273|consen  357 GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHD-------------LQAHSKEIYTIKWSPTGPVTSN  418 (524)
T ss_pred             cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhh-------------hhhhccceeeEeecCCCCccCC
Confidence            899999999999999 9999999999999999766432    122             345577899999999743    


Q ss_pred             -----EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          341 -----HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       341 -----~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                           .+++++ |++|++||+.. +.++..|..|..++               .+++|||+|++||+|+.||.|.
T Consensus       419 ~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pV---------------ysvafS~~g~ylAsGs~dg~V~  477 (524)
T KOG0273|consen  419 PNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPV---------------YSVAFSPNGRYLASGSLDGCVH  477 (524)
T ss_pred             CcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCce---------------EEEEecCCCcEEEecCCCCeeE
Confidence                 566664 69999999986 99999999999987               5999999999999999999873

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.9e-32  Score=245.65  Aligned_cols=280  Identities=19%  Similarity=0.293  Sum_probs=226.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |...|.++.|+++|+++++++.++.+++|+..+...                         +....+.+|.         
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~---------  203 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT---------  203 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence            478999999999999999999999999999965540                         1345568888         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEc-CCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         ..|.+++|  +|+++++++++.|++|++||+ ..+...+.+..+.             ..+.++.+++.+..+++++
T Consensus       204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-------------~~v~~~~f~p~g~~i~Sgs  265 (456)
T KOG0266|consen  204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-------------TYVTSVAFSPDGNLLVSGS  265 (456)
T ss_pred             ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC-------------CceEEEEecCCCCEEEEec
Confidence               89999999  899999999999999999999 4446666554322             2345666667777777777


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc--eeeeeecCCCcCcCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDL  266 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~  266 (409)
                      .  |++|++||+++   +++++.+ .+|...|++++|++++++|+++ .|+.|++||+. .+.  +...       +.++
T Consensus       266 ~--D~tvriWd~~~---~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~-------~~~~  331 (456)
T KOG0266|consen  266 D--DGTVRIWDVRT---GECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKL-------LSGA  331 (456)
T ss_pred             C--CCcEEEEeccC---CeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeec-------ccCC
Confidence            7  99999999988   7888887 8999999999999999999999 99999999999 555  2333       3444


Q ss_pred             cC--ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          267 TE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       267 ~~--~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      ..  .++++.|+|++ .++++++.|+.+++||++.+..    ...+..|...          ...+.+...++.++++++
T Consensus       332 ~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~i~s  396 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL----------VRCIFSPTLSTGGKLIYS  396 (456)
T ss_pred             CCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc----------ceeEecccccCCCCeEEE
Confidence            33  59999999999 9999999999999999998764    2444443211          024556666889999999


Q ss_pred             eec-CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcc--cCCC
Q 015290          345 RDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YRRD  407 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s--~dg~  407 (409)
                      |+. +.|++||+.+ +..+..+.+| ...+               ..++++|...++++++  .|+.
T Consensus       397 g~~d~~v~~~~~~s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~  447 (456)
T KOG0266|consen  397 GSEDGSVYVWDSSS-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGL  447 (456)
T ss_pred             EeCCceEEEEeCCc-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCce
Confidence            985 9999999986 8889999999 5544               5899999999999998  4544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.5e-32  Score=221.92  Aligned_cols=300  Identities=19%  Similarity=0.254  Sum_probs=228.6

Q ss_pred             ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (409)
                      .-++.+.+-.+.+...+.|.+-|.++...  ++.+++|++||.+++||..+..                           
T Consensus        86 eIEYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~---------------------------  136 (423)
T KOG0313|consen   86 EIEYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS---------------------------  136 (423)
T ss_pred             EEEEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce---------------------------
Confidence            45667777777788888899999999988  7899999999999999987654                           


Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc-
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE-  170 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  170 (409)
                       ...+.||.            ++|.+++|.- ++....|++++.|.++++|.++.+........          ..... 
T Consensus       137 -~~~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~----------~~~GHk  193 (423)
T KOG0313|consen  137 -IKTIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK----------VCRGHK  193 (423)
T ss_pred             -EEEEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh----------Hhcccc
Confidence             56789999            8999999973 22334699999999999999987654322110          00111 


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCC----------------------cccceeeeeeccccccceeEEEeCC
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGN----------------------SVHARCQKVYPHAHDFNINSISNNS  228 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~~~~~~~~~~~~~v~~l~~~~  228 (409)
                      ..+-+....+++..+.+++.  |..+++|+.+.                      .....++.++ .+|..+|.++.|++
T Consensus       194 ~~V~sVsv~~sgtr~~SgS~--D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  194 RSVDSVSVDSSGTRFCSGSW--DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWSD  270 (423)
T ss_pred             cceeEEEecCCCCeEEeecc--cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEcC
Confidence            22223333556666777766  99999999331                      1122234444 89999999999998


Q ss_pred             CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc
Q 015290          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (409)
Q Consensus       229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  307 (409)
                       ...++++ .|.+|+.||+. .+.....+       . -...+.++..+|.. ++|++|+.|..|++||.|++.-     
T Consensus       271 -~~v~yS~SwDHTIk~WDle-tg~~~~~~-------~-~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-----  334 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLE-TGGLKSTL-------T-TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG-----  334 (423)
T ss_pred             -CCceEeecccceEEEEEee-cccceeee-------e-cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-----
Confidence             5567777 99999999999 55554431       2 33568999999988 9999999999999999998642     


Q ss_pred             ccccccccccCCcccccccccceeeeEeccCCCE-EEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCcc
Q 015290          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  385 (409)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (409)
                               ......|.+|.+.|.++.|+|...+ |++|+ |+++++||+++...++..+.+|...+             
T Consensus       335 ---------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv-------------  392 (423)
T KOG0313|consen  335 ---------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV-------------  392 (423)
T ss_pred             ---------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE-------------
Confidence                     1123346788999999999998765 55677 59999999998556999999998865             


Q ss_pred             ceeeEEEcCCCCeEEEcccCCCC
Q 015290          386 DKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       386 ~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                        +++.|. ++.+|++|+.|++|
T Consensus       393 --l~vdW~-~~~~IvSGGaD~~l  412 (423)
T KOG0313|consen  393 --LSVDWN-EGGLIVSGGADNKL  412 (423)
T ss_pred             --EEEecc-CCceEEeccCcceE
Confidence              699998 66789999999876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=246.33  Aligned_cols=269  Identities=19%  Similarity=0.330  Sum_probs=197.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCC-ccc------------------hhh-hhhh------cccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-QHI------------------SRS-ELEK------QMDF   83 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~-~~~------------------~~~-~~~~------~~~~   83 (409)
                      .|.+.|++|.||+||+|||+|+.||.|+||.+...+.... .+.                  ..+ ....      ....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876221000 000                  000 0000      0000


Q ss_pred             ccc-CCC------ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccC
Q 015290           84 TST-SHP------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  156 (409)
Q Consensus        84 ~~~-~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  156 (409)
                      ... ..|      .-+++..|.||.            +.|.+|.|  | ...+|++++.|++||+|++...++++.    
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--S-Kn~fLLSSSMDKTVRLWh~~~~~CL~~----  405 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--S-KNNFLLSSSMDKTVRLWHPGRKECLKV----  405 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheeccc--c-cCCeeEeccccccEEeecCCCcceeeE----
Confidence            000 011      235678889999            89999999  4 455999999999999999987755543    


Q ss_pred             CCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEE
Q 015290          157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS  235 (409)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~  235 (409)
                                                                              |  .|...|+|++|+| |.+++++
T Consensus       406 --------------------------------------------------------F--~HndfVTcVaFnPvDDryFiS  427 (712)
T KOG0283|consen  406 --------------------------------------------------------F--SHNDFVTCVAFNPVDDRYFIS  427 (712)
T ss_pred             --------------------------------------------------------E--ecCCeeEEEEecccCCCcEee
Confidence                                                                    2  6999999999999 6789999


Q ss_pred             e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc
Q 015290          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (409)
Q Consensus       236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  314 (409)
                      | -|+.|+||++. ..+...        ...-...|++++|.|+| ++.+.|+.+|.+++|+.+..++..    .+..+.
T Consensus       428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~  493 (712)
T KOG0283|consen  428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL  493 (712)
T ss_pred             cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence            9 99999999998 454443        23344789999999999 999999999999999998865421    111100


Q ss_pred             cccCCcccccccccceeeeEeccCC--CEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE
Q 015290          315 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (409)
                      ..    ..-..|. .|+.+.|.|..  +.|+|..|..|||||.+. ..++..|+|.......             ....|
T Consensus       494 ~~----~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf  554 (712)
T KOG0283|consen  494 HN----KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF  554 (712)
T ss_pred             cc----CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence            00    0001123 79999999854  377888889999999974 7888999987765321             47999


Q ss_pred             cCCCCeEEEcccCCCC
Q 015290          393 SGDGLHFATGSYRRDN  408 (409)
Q Consensus       393 spdg~~l~s~s~dg~i  408 (409)
                      +.||++|+++++|..|
T Consensus       555 s~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWV  570 (712)
T ss_pred             ccCCCEEEEeecCceE
Confidence            9999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-30  Score=254.91  Aligned_cols=304  Identities=13%  Similarity=0.120  Sum_probs=212.2

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ...|.+.|.+++|+|+|++||+|+.|+.|+||+.......   +   ..             ...+...+.++       
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~---~---~~-------------~~~~~~~~~~~-------  532 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD---G---RD-------------IHYPVVELASR-------  532 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc---c---cc-------------cccceEEeccc-------
Confidence            4458999999999999999999999999999997642210   0   00             00011222332       


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceee
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGY  186 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  186 (409)
                            ..|.+++|+| +++.+|++++.|++|++||+.+++.......+             .+.+..+.+++ +..+++
T Consensus       533 ------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-------------~~~V~~l~~~p~~~~~L~  592 (793)
T PLN00181        533 ------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-------------EKRVWSIDYSSADPTLLA  592 (793)
T ss_pred             ------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-------------CCCEEEEEEcCCCCCEEE
Confidence                  5799999963 56789999999999999999987765544322             12334444443 445666


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeC-CCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      +++.  |+.|++||+...   .++..+ . +...+.++.|+ +++..|++| .|+.|++||++.....+..       +.
T Consensus       593 Sgs~--Dg~v~iWd~~~~---~~~~~~-~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~  658 (793)
T PLN00181        593 SGSD--DGSVKLWSINQG---VSIGTI-K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MI  658 (793)
T ss_pred             EEcC--CCEEEEEECCCC---cEEEEE-e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ec
Confidence            6665  899999999763   444444 3 33578999995 568999999 9999999999833333443       57


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|...|.++.|. ++ .+|++++.|+.|++||++.+....           .......+.+|...+..++|+|++++|++
T Consensus       659 ~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-----------~~~~l~~~~gh~~~i~~v~~s~~~~~las  725 (793)
T PLN00181        659 GHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-----------NETPLHSFMGHTNVKNFVGLSVSDGYIAT  725 (793)
T ss_pred             CCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-----------CCcceEEEcCCCCCeeEEEEcCCCCEEEE
Confidence            899999999997 55 799999999999999997632100           00112235567788999999999999999


Q ss_pred             eec-CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+. +.|++|+... ..++..+... ...+....   ..+....|.+++|+|++..|++|+.||+|
T Consensus       726 gs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        726 GSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             EeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence            985 9999999864 4444333211 11111000   00111124799999999999999999987

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-32  Score=239.32  Aligned_cols=282  Identities=18%  Similarity=0.224  Sum_probs=223.8

Q ss_pred             cCCCcEEEEEE-CCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEF-DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~-~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +..+.|.+|+| .|+.++||++++.+.+++|+..+...                            ..+.||+       
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------------~ii~GH~-------  365 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------------QIIPGHT-------  365 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------------------EEEeCch-------
Confidence            35678999887 56789999999999999998887653                            3789999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc---CCCcccccccccccccCceeccCCCCCcee
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM---DHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                           +.|.++..  ..+|.+|++|+.|+++++|.++++........   .+...+.++..           ......++
T Consensus       366 -----e~vlSL~~--~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~-----------~~~~asff  427 (775)
T KOG0319|consen  366 -----EAVLSLDV--WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG-----------SKLGASFF  427 (775)
T ss_pred             -----hheeeeee--cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee-----------cccCccEE
Confidence                 89999994  36778999999999999999955433221110   11111111111           22333455


Q ss_pred             ecccccccceeEEEecCCcccce--eee---eeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecC
Q 015290          186 YHLEWTENMATKIANVGNSVHAR--CQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~--~~~---~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (409)
                      ++++.  |.++++|++....+..  ...   .....|+..|++++++|+.+.+++| .|.+.+||+++ ......+    
T Consensus       428 vsvS~--D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~v----  500 (775)
T KOG0319|consen  428 VSVSQ--DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGV----  500 (775)
T ss_pred             EEecC--CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEE----
Confidence            55554  9999999997622211  111   1126799999999999999999999 99999999999 7777777    


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                         +.+|...|.++.|+|.. +.++++|.|++|+||.+.+.+.    .+.             |.||...|..+.|-.+|
T Consensus       501 ---LsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC----lkT-------------~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  501 ---LSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC----LKT-------------FEGHTSAVLRASFIRNG  559 (775)
T ss_pred             ---eeCCccceEEEEecccc-ceeEeccCCceEEEEEecccee----eee-------------ecCccceeEeeeeeeCC
Confidence               79999999999999998 9999999999999999988652    344             45568899999999999


Q ss_pred             CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.|++++ ||-|++|++++ +.++.++.+|++.+               ++++-+|++.+++||+.||.|
T Consensus       560 ~qliS~~adGliKlWnikt-~eC~~tlD~H~Drv---------------WaL~~~~~~~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKT-NECEMTLDAHNDRV---------------WALSVSPLLDMFVTGGGDGRI  613 (775)
T ss_pred             cEEEeccCCCcEEEEeccc-hhhhhhhhhcccee---------------EEEeecCccceeEecCCCeEE
Confidence            9999875 69999999997 89999999999987               899999999999999999976

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-32  Score=208.10  Aligned_cols=233  Identities=21%  Similarity=0.363  Sum_probs=200.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.++|.++.|+-||+|.++|+.|.+|++|+...+.                           ++.++.+|.         
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG---------   59 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG---------   59 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC---------
Confidence            78999999999999999999999999999988776                           578899999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|..++-  +.|...|++|+.|+.+.+||+.+|+..+.                                      
T Consensus        60 ---~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr--------------------------------------   96 (307)
T KOG0316|consen   60 ---HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR--------------------------------------   96 (307)
T ss_pred             ---ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee--------------------------------------
Confidence               78999998  78999999999999999999999876543                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC-ceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~  268 (409)
                                             +.+|.+.|+.++|+.+...+++| .|.++++||.+... +++++       +....+
T Consensus        97 -----------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~D  146 (307)
T KOG0316|consen   97 -----------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAKD  146 (307)
T ss_pred             -----------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhcC
Confidence                                   27899999999999999999999 99999999998432 34554       455667


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .|.++..+.   ..+++||.||+++.||+|.|.+..    -+-               ..+|+++.|++||+.++.++ +
T Consensus       147 ~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy~---------------g~pit~vs~s~d~nc~La~~l~  204 (307)
T KOG0316|consen  147 GVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DYF---------------GHPITSVSFSKDGNCSLASSLD  204 (307)
T ss_pred             ceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hhc---------------CCcceeEEecCCCCEEEEeecc
Confidence            899998874   679999999999999999987521    111               35899999999999988887 5


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +++++.|-.+ |+.++.+++|.+.-++             ..++++.....+++||+||.|
T Consensus       205 stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~V  251 (307)
T KOG0316|consen  205 STLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKV  251 (307)
T ss_pred             ceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceE
Confidence            9999999987 9999999999987554             378888888899999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-30  Score=202.15  Aligned_cols=257  Identities=15%  Similarity=0.320  Sum_probs=199.5

Q ss_pred             ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (409)
                      .|.++..+.+       .|+..|.+++|+|.|++||+|+.|.++.||.-..+                         +++
T Consensus        49 s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efe   96 (312)
T KOG0645|consen   49 SWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFE   96 (312)
T ss_pred             cEEEEEeccc-------cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------cee
Confidence            3666665543       49999999999999999999999999999987654                         567


Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee---eeeeccCCCccccccccccc
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---KKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~  169 (409)
                      ++..+.||+            ..|.+++|  +++|.+||+|+.|+.|-||.+..+..   ...+..+             
T Consensus        97 cv~~lEGHE------------nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-------------  149 (312)
T KOG0645|consen   97 CVATLEGHE------------NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-------------  149 (312)
T ss_pred             EEeeeeccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-------------
Confidence            899999999            89999999  89999999999999999999985432   2222211             


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                      ...+-.+.++|....+++++.  |++|++|.-+....-.|.+++ .+|...|.+++|++.|..|+++ +|++++||....
T Consensus       150 tqDVK~V~WHPt~dlL~S~SY--DnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSY--DNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             cccccEEEEcCCcceeEEecc--CCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            122344556676667776665  999999998876677888887 8999999999999999999999 999999999761


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .-            -..|...++.+.|. +  -.|++++.|+.|++|.....-. ......+.         ..-..|..
T Consensus       227 ~~------------~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d-~p~~~l~~---------~~~~aHe~  281 (312)
T KOG0645|consen  227 DL------------SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPD-EPSWNLLA---------KKEGAHEV  281 (312)
T ss_pred             Cc------------chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCC-CchHHHHH---------hhhccccc
Confidence            11            23377889999999 4  4899999999999997654211 00011111         01235677


Q ss_pred             ceeeeEeccC-CCEEEEeec-CeEEEEEcc
Q 015290          329 SISDIKFAND-GQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       329 ~i~~~~~s~~-g~~l~sg~~-~~v~iwd~~  356 (409)
                      .|++++|.|. ...|++|+| |.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999995 578888876 999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.7e-32  Score=225.14  Aligned_cols=244  Identities=16%  Similarity=0.257  Sum_probs=202.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|+++|.++.|+++|.++++|+.+|.|++|+..-..                            +..+++|..       
T Consensus       136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----------------------------Vk~~~ahh~-------  180 (464)
T KOG0284|consen  136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----------------------------VKIIQAHHA-------  180 (464)
T ss_pred             hhcccceeEEEccCCCEEEEcCCCceEEecccchhh----------------------------hHHhhHhhh-------
Confidence            399999999999999999999999999999976433                            334455442       


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|++++|  +|+...|++|+.||+|+|||....+.......+             .-.+.++.+++....+++++
T Consensus       181 ----eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-------------gwdVksvdWHP~kgLiasgs  241 (464)
T KOG0284|consen  181 ----EAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-------------GWDVKSVDWHPTKGLIASGS  241 (464)
T ss_pred             ----hhhheecc--CCCCceeEEecCCCeEEEEeccCCchhheeccC-------------CCCcceeccCCccceeEEcc
Confidence                69999999  788889999999999999999877665544321             22356778888888888888


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  |..|++||..+   +.|+.++ .+|...|..+.|+|++++|+++ .|..++++|++ .-+.+.+       +.+|..
T Consensus       242 k--DnlVKlWDprS---g~cl~tl-h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR-~mkEl~~-------~r~Hkk  307 (464)
T KOG0284|consen  242 K--DNLVKLWDPRS---GSCLATL-HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR-TMKELFT-------YRGHKK  307 (464)
T ss_pred             C--CceeEeecCCC---cchhhhh-hhccceEEEEEEcCCCCeeEEccCCceEEEEehh-HhHHHHH-------hhcchh
Confidence            6  77999999987   7788876 8999999999999999999999 99999999999 4444444       689999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .++++.|+|-.+.+|.+|+.||.|..|.+...+.    +....            .+|...|++++|+|-|.+|++|+ |
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p----~~~i~------------~AHd~~iwsl~~hPlGhil~tgsnd  371 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP----LGEIP------------PAHDGEIWSLAYHPLGHILATGSND  371 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEecccccc----ccCCC------------cccccceeeeeccccceeEeecCCC
Confidence            9999999999888999999999999999874332    11111            35678999999999999999998 4


Q ss_pred             CeEEEEEccC
Q 015290          348 MNLKLWDIRM  357 (409)
Q Consensus       348 ~~v~iwd~~~  357 (409)
                      .++++|.-..
T Consensus       372 ~t~rfw~r~r  381 (464)
T KOG0284|consen  372 RTVRFWTRNR  381 (464)
T ss_pred             cceeeeccCC
Confidence            9999998643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-31  Score=231.09  Aligned_cols=236  Identities=17%  Similarity=0.248  Sum_probs=204.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +.+.|.++.|+|...+++++-.+|.|.||+.+++..                           +..+.-.+         
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~---------   55 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE---------   55 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc---------
Confidence            789999999999999999999999999999998763                           45555555         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         -+|++..|.  ...+.+++|+.|..|++|+.++++....                                      
T Consensus        56 ---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~--------------------------------------   92 (794)
T KOG0276|consen   56 ---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKT--------------------------------------   92 (794)
T ss_pred             ---cchhhheee--eccceEEEecCCceEEEEecccceeeEE--------------------------------------
Confidence               689999996  5667999999999999999998765443                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                            | .+|.+.|++++.||...+++++ +|-+|++||.+..-.+.++       +.+|...
T Consensus        93 ----------------------F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~Hy  142 (794)
T KOG0276|consen   93 ----------------------F-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEHY  142 (794)
T ss_pred             ----------------------e-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcceE
Confidence                                  2 7899999999999999999999 9999999999943344555       8999999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC--CEEEEeec
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY  347 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~sg~~  347 (409)
                      |.+++|+|..++.||+++.|++|++|.+.+...                 .-++.+|...|+++.+-+-|  .||++|+|
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-----------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-----------------NFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCC-----------------ceeeeccccCcceEEeccCCCcceEEecCC
Confidence            999999999889999999999999999876432                 22245678899999998865  59999986


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       ..|+|||.++ ..+++++.||...+               ..+.|+|.-..++|||+||+|
T Consensus       206 D~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  206 DLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             CceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccE
Confidence             9999999997 89999999999987               589999999999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-31  Score=237.07  Aligned_cols=284  Identities=17%  Similarity=0.244  Sum_probs=232.7

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      +..|..++|+|...+++++-..|.|++||..-+.                           ++..|..|.          
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t---------------------------li~rFdeHd----------   51 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------------LIDRFDEHD----------   51 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------------HHhhhhccC----------
Confidence            5789999999999999999999999999998665                           356788898          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ++|+.|.||  |.+.+|++|+.|..|++|+..+.++......+.             ..+.++.+++.-.++.+++. 
T Consensus        52 --GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrclftL~GHl-------------DYVRt~~FHheyPWIlSASD-  113 (1202)
T KOG0292|consen   52 --GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL-------------DYVRTVFFHHEYPWILSASD-  113 (1202)
T ss_pred             --Cccceeeec--CCCCeEEecCCccEEEEEecccceehhhhcccc-------------ceeEEeeccCCCceEEEccC-
Confidence              999999995  788899999999999999999988776554332             34667778888888888876 


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeee---------------
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI---------------  255 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~---------------  255 (409)
                       |.+|++|+.++   ..|+..+ .+|...|.|.+|+|....++++ -|.+|++||+.. -.....               
T Consensus       114 -DQTIrIWNwqs---r~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  114 -DQTIRIWNWQS---RKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             -CCeEEEEeccC---CceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecc-hhccCCCCCCchhhhhccccc
Confidence             88999999987   6788777 8999999999999999999999 999999999862 100000               


Q ss_pred             ---e---e-cCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          256 ---V---D-MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       256 ---~---~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                         +   + +-..-+.+|...|+.++|+|.- .++++|+.|..|++|.+...       +.|+.        .+..+|..
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnet-------KaWEv--------DtcrgH~n  251 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET-------KAWEV--------DTCRGHYN  251 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccc-------cceee--------hhhhcccC
Confidence               0   0 0001267899999999999998 99999999999999998764       33433        23567889


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      .|.++-|+|...++++.++ ++|++||+.+ .+.++++......-               +.++-+|..+++|.|-+.|.
T Consensus       252 nVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRF---------------W~laahP~lNLfAAgHDsGm  315 (1202)
T KOG0292|consen  252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRF---------------WILAAHPELNLFAAGHDSGM  315 (1202)
T ss_pred             CcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeE---------------EEEEecCCcceeeeecCCce
Confidence            9999999999999999874 9999999986 78888887555432               78999999999988877765


Q ss_pred             C
Q 015290          408 N  408 (409)
Q Consensus       408 i  408 (409)
                      +
T Consensus       316 ~  316 (1202)
T KOG0292|consen  316 I  316 (1202)
T ss_pred             E
Confidence            3

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=215.24  Aligned_cols=290  Identities=15%  Similarity=0.232  Sum_probs=236.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+..+-|..|+|||+||++|+.||-|.+|+..+++.       ++.++            |..-..|.-+.         
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl-------rKDLk------------YQAqd~fMMmd---------  263 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL-------RKDLK------------YQAQDNFMMMD---------  263 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchh-------hhhhh------------hhhhcceeecc---------
Confidence            456788999999999999999999999999998874       44442            22333455555         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ++|.|+.|  +.|...+++|+.||.|++|.+.+|.+.+.+.-.+...++|+.|+..+..+++..+            
T Consensus       264 ---~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf------------  326 (508)
T KOG0275|consen  264 ---DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF------------  326 (508)
T ss_pred             ---cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc------------
Confidence               89999999  8999999999999999999999999988877667777888877776666665554            


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        |.++|+--+..   +++++.| .+|...|+...|.++|..++++ .||+|++|+.. +.+++.++.     ..+...+
T Consensus       327 --D~tvRiHGlKS---GK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk-----~~~~d~~  394 (508)
T KOG0275|consen  327 --DQTVRIHGLKS---GKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFK-----PLGTDYP  394 (508)
T ss_pred             --cceEEEecccc---chhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhcc-----CCCCccc
Confidence              77888877765   7888887 9999999999999999999999 99999999999 777877742     2345567


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      |.++..-|.++..++.+...+++.|.++...-     ++.+.....          -.+...+.+.||.|.++.+.+ |+
T Consensus       395 vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-----VrsfsSGkR----------EgGdFi~~~lSpkGewiYcigED~  459 (508)
T KOG0275|consen  395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-----VRSFSSGKR----------EGGDFINAILSPKGEWIYCIGEDG  459 (508)
T ss_pred             ceeEEEcCCCCceEEEEcCCCeEEEEeccceE-----EeeeccCCc----------cCCceEEEEecCCCcEEEEEccCc
Confidence            89999999888899999999999999987642     233322000          034677789999999999876 59


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .++.+.+.+ |+.-..+..|+..+               ..++-+|..+.||+-++||.+
T Consensus       460 vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  460 VLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             EEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchh
Confidence            999999986 89989999998765               589999999999999999964

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=2.3e-31  Score=216.24  Aligned_cols=245  Identities=17%  Similarity=0.243  Sum_probs=201.8

Q ss_pred             CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccc
Q 015290           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (409)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (409)
                      ++.|++.+.+.+|.            +.|.|+++  .|..+.|++++.|++|+|||+.+++++.....+... +..+.+ 
T Consensus       138 HapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-vr~vav-  201 (460)
T KOG0285|consen  138 HAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-VRGVAV-  201 (460)
T ss_pred             cCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEeecchhhe-eeeeee-
Confidence            45788899999999            99999999  788999999999999999999999887765432211 111222 


Q ss_pred             ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~  246 (409)
                                 +.--.++.++..  |+.|+.||++.   .+.++.| .+|-..|.|++.+|.-..|++| .|.++++||+
T Consensus       202 -----------S~rHpYlFs~ge--dk~VKCwDLe~---nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDi  264 (460)
T KOG0285|consen  202 -----------SKRHPYLFSAGE--DKQVKCWDLEY---NKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI  264 (460)
T ss_pred             -----------cccCceEEEecC--CCeeEEEechh---hhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeee
Confidence                       222234444433  88999999987   6777877 8999999999999999999999 9999999999


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      + ++..+.+       +.+|...|.++.+.|-. ..+++||.|++|++||++.++..    ..+             ..|
T Consensus       265 R-tr~~V~~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~h  318 (460)
T KOG0285|consen  265 R-TRASVHV-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THH  318 (460)
T ss_pred             c-ccceEEE-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecc
Confidence            9 6777766       79999999999999988 78999999999999999998642    222             334


Q ss_pred             ccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      ...+.+++.+|....+|+++...|+-|++.. +..++.+.+|...+               .+++...|| ++++|+++|
T Consensus       319 kksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng  381 (460)
T KOG0285|consen  319 KKSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNG  381 (460)
T ss_pred             cceeeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCce
Confidence            6789999999999999999889999999985 88888999999876               478888777 677888888


Q ss_pred             CC
Q 015290          407 DN  408 (409)
Q Consensus       407 ~i  408 (409)
                      .+
T Consensus       382 ~~  383 (460)
T KOG0285|consen  382 SI  383 (460)
T ss_pred             EE
Confidence            65

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=6.4e-32  Score=218.79  Aligned_cols=266  Identities=15%  Similarity=0.247  Sum_probs=205.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+.|.|+.+.  ...+++|..|++|+|||..+..                           ++..+.||+         
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHt---------  237 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHT---------  237 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------HHHhhhcCC---------
Confidence            46789999986  5578999999999999988655                           567789999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|.|+.|    +.+.+++|+.|.+|++||++++++....-.+... +..+.  -.++            ++.+.+ 
T Consensus       238 ---GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~tlihHcea-VLhlr--f~ng------------~mvtcS-  294 (499)
T KOG0281|consen  238 ---GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA-VLHLR--FSNG------------YMVTCS-  294 (499)
T ss_pred             ---CcEEeeec----cceEEEecCCCceEEEEeccCCchhhHHhhhcce-eEEEE--EeCC------------EEEEec-
Confidence               99999999    5569999999999999999999887654433221 11110  1112            222222 


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                       .|.++.+||+.......+.+.+ .+|...|+.+.|+  .++++++ .|.+|++|++. +...+++       +.+|...
T Consensus       295 -kDrsiaVWdm~sps~it~rrVL-vGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRt-------l~gHkRG  362 (499)
T KOG0281|consen  295 -KDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRT-------LNGHKRG  362 (499)
T ss_pred             -CCceeEEEeccCchHHHHHHHH-hhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehh-------hhccccc
Confidence             3889999999988877777766 8999999999996  5699999 99999999999 7888877       7899999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      |-|+.+.  + +++++||.|.+|++||+..|..    ++.+++             |..-|.++.|.  .+.+++|. ||
T Consensus       363 IAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeG-------------HEeLvRciRFd--~krIVSGaYDG  420 (499)
T KOG0281|consen  363 IACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEG-------------HEELVRCIRFD--NKRIVSGAYDG  420 (499)
T ss_pred             ceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhc-------------hHHhhhheeec--Cceeeeccccc
Confidence            9998875  5 8999999999999999999874    456655             46789999997  46888887 59


Q ss_pred             eEEEEEccCCCc--------ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|++||+.....        ++..+..|.+.+               +.+.|  |...+++++.|.+|
T Consensus       421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRV---------------FrLQF--D~fqIvsssHddtI  471 (499)
T KOG0281|consen  421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRV---------------FRLQF--DEFQIISSSHDDTI  471 (499)
T ss_pred             eEEEEecccccCCcccccchHHHhhhhcccee---------------EEEee--cceEEEeccCCCeE
Confidence            999999975222        223333444433               47776  56778888888765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=5.7e-30  Score=199.66  Aligned_cols=276  Identities=16%  Similarity=0.221  Sum_probs=214.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|..+|.+|+|+.+|..||+|+.|+++++|+++..+..                         .-....+|.       
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~-------   64 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT-------   64 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-------
Confidence            448899999999999999999999999999999866421                         112467888       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|-.++|.| +....|++++.|++|++||++.+++.....              ..+.-+...++|++.+++.+
T Consensus        65 -----~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~--------------~~~eni~i~wsp~g~~~~~~  124 (313)
T KOG1407|consen   65 -----DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIE--------------TKGENINITWSPDGEYIAVG  124 (313)
T ss_pred             -----cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEee--------------ccCcceEEEEcCCCCEEEEe
Confidence                 8899999986 667799999999999999999988765543              23444556667777777776


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  +..|.+.|..+.   +....  ......++.+.|+-++.+++.. ..|.|.|.... .-+++..       +..|.
T Consensus       125 ~k--dD~it~id~r~~---~~~~~--~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~s-------i~AH~  189 (313)
T KOG1407|consen  125 NK--DDRITFIDARTY---KIVNE--EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQS-------IKAHP  189 (313)
T ss_pred             cC--cccEEEEEeccc---ceeeh--hcccceeeeeeecCCCCEEEEecCCceEEEEecc-ccccccc-------cccCC
Confidence            65  777777777542   22221  2334567788998777777666 78999999887 5555554       78899


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ....++.|+|+| ++||+|+.|-.+.+||+..-- |.   +.+..             +.-+|..+.||.||++||+|++
T Consensus       190 snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-C~---R~isR-------------ldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  190 SNCICIEFDPDG-RYFATGSADALVSLWDVDELI-CE---RCISR-------------LDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             cceEEEEECCCC-ceEeeccccceeeccChhHhh-hh---eeecc-------------ccCceEEEEeccCcceeeccCc
Confidence            999999999999 999999999999999987632 32   22222             2568999999999999999985


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                       ..|-|=++.+ |..+..++-....                +.++|+|...+||.+..|.
T Consensus       252 Dh~IDIA~vet-Gd~~~eI~~~~~t----------------~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  252 DHFIDIAEVET-GDRVWEIPCEGPT----------------FTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             cceEEeEeccc-CCeEEEeeccCCc----------------eeEEecCCCceeeEEecCC
Confidence             9999999987 7777777643333                5999999999999888775

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1e-30  Score=212.93  Aligned_cols=243  Identities=16%  Similarity=0.248  Sum_probs=202.5

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.+.|.+|+|+..|++||+++.|-.+++||.++.                          +++++.+.+|+      
T Consensus       146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------------~~c~ks~~gh~------  193 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------------FRCIKSLIGHE------  193 (406)
T ss_pred             hhccccceeEEEEecCccEEEecCCccchhheeHHHH--------------------------HHHHHHhcCcc------
Confidence            4459999999999999999999999988999999863                          23566778898      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.++.|.  |.|.++++++.|.+|+.|++.++-++..+..+             ..-+....-+.++.++++
T Consensus       194 ------h~vS~V~f~--P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-------------~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  194 ------HGVSSVFFL--PLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-------------SEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             ------cceeeEEEE--ecCCeeeecccccceeEEecccceeEEeccCc-------------hHhEEEEEecCCeeEEEe
Confidence                  899999995  67899999999999999999999887765422             123333445667778887


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---------------CCeEEEe-cCCeEEEEEccCCCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---------------CETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------------~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                      ++.  +.++++|-..+   .+|...+ ..|+.+|.|++|.|.               +++++++ .|++|++||+. .+.
T Consensus       253 ~s~--dqtl~vW~~~t---~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-tg~  325 (406)
T KOG0295|consen  253 CSN--DQTLRVWVVAT---KQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-TGM  325 (406)
T ss_pred             cCC--CceEEEEEecc---chhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc-CCe
Confidence            776  88999999977   4555555 889999999999652               2588888 99999999999 778


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                      ++.+       +.+|..+|..++|+|.| +||+++..|+++++||+++.+.    .+.++.             |..-++
T Consensus       326 cL~t-------L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~c----mk~~~a-------------h~hfvt  380 (406)
T KOG0295|consen  326 CLFT-------LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQC----MKTLEA-------------HEHFVT  380 (406)
T ss_pred             EEEE-------EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecccee----eeccCC-------------CcceeE
Confidence            8877       79999999999999999 9999999999999999998763    244444             356899


Q ss_pred             eeEeccCCCEEEEee-cCeEEEEEc
Q 015290          332 DIKFANDGQHLLSRD-YMNLKLWDI  355 (409)
Q Consensus       332 ~~~~s~~g~~l~sg~-~~~v~iwd~  355 (409)
                      +++|+.+..|+++|+ |..+++|..
T Consensus       381 ~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  381 SLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEecCCCCceEEeccccceeeeeec
Confidence            999999999999998 599999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.5e-31  Score=203.79  Aligned_cols=238  Identities=18%  Similarity=0.284  Sum_probs=195.1

Q ss_pred             CCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+.+..++|+++ ...+++++.||+++|||..-..                          .++..++.|.         
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------------~Pi~~~kEH~---------  104 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------------KPIHKFKEHK---------  104 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------------------cchhHHHhhh---------
Confidence            678999999994 4578888999999999954333                          2677889999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|.++.|.+ .+...+++++.|++||+|+...++...                                       
T Consensus       105 ---~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~---------------------------------------  141 (311)
T KOG0277|consen  105 ---REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQ---------------------------------------  141 (311)
T ss_pred             ---hheEEecccc-ccceeEEeeccCCceEeecCCCCcceE---------------------------------------
Confidence               8999999963 567788899999999999987654333                                       


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                           +| .+|...|...+|+|. ++.++++ .|+.+++||++..++.+.        ++.|..
T Consensus       142 ---------------------Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~  191 (311)
T KOG0277|consen  142 ---------------------TF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNS  191 (311)
T ss_pred             ---------------------ee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccc
Confidence                                 33 789999999999996 5777888 999999999997766554        477888


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-  346 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-  346 (409)
                      .+.++.|+.-.++++++|+.|+.|+.||+++-+..                ...+.+|.-.|+.++|||.. ..||+++ 
T Consensus       192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----------------l~eL~gh~~AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----------------LFELNGHGLAVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             eeEeecccccCCcEEEecCCCceEEEEehhhcccc----------------ceeecCCceEEEEEecCcchhhHhhhccc
Confidence            99999999888799999999999999999985421                12235678899999999975 5778888 


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcccCCCC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s~dg~i  408 (409)
                      |-++||||...+...+.++..|...+               ..+.||+ ++.++|+++.|+.+
T Consensus       256 DmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  256 DMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             cceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccce
Confidence            59999999986567777787777765               5889997 67799999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.6e-30  Score=226.94  Aligned_cols=304  Identities=16%  Similarity=0.186  Sum_probs=214.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|+.+|.-++|+|.+.++|+|+.||.|+|||+..+.                           +...|+||.        
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---------------------------~th~fkG~g--------  147 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---------------------------CTHSFKGHG--------  147 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---------------------------EEEEecCCC--------
Confidence            399999999999999999999999999999999776                           578899999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee-eeeeccCCCcccccccccccccCceec------------
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNE------------  176 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  176 (409)
                          +.|.++.|+|.+....|+++..|+++++||+..+.. ......+. ..+.++.+.......++.            
T Consensus       148 ----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~-S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~  222 (775)
T KOG0319|consen  148 ----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK-SAVTSLAFSEDSLELLSVGRDKVIIVWDLV  222 (775)
T ss_pred             ----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh-hheeeeeeccCCceEEEeccCcEEEEeehh
Confidence                999999998877777899999999999999985432 11000000 000111100000000000            


Q ss_pred             -----------------cC-----CCCCceeecccccccce---------------------------------------
Q 015290          177 -----------------HN-----PPSFAHGYHLEWTENMA---------------------------------------  195 (409)
Q Consensus       177 -----------------~~-----~~~~~~~~~~~~~~~~~---------------------------------------  195 (409)
                                       ..     ...+.++.+.+  ..|.                                       
T Consensus       223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt  300 (775)
T KOG0319|consen  223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT  300 (775)
T ss_pred             hhhhhheechhhheeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence                             00     00001111111  1222                                       


Q ss_pred             -----------------------------------------------eEEEecCCcccceeeeeeccccccceeEEEeCC
Q 015290          196 -----------------------------------------------TKIANVGNSVHARCQKVYPHAHDFNINSISNNS  228 (409)
Q Consensus       196 -----------------------------------------------i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  228 (409)
                                                                     +|+++..+.   .|.  +..+|...|.++....
T Consensus       301 aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~--ii~GH~e~vlSL~~~~  375 (775)
T KOG0319|consen  301 AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQ--IIPGHTEAVLSLDVWS  375 (775)
T ss_pred             ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---ceE--EEeCchhheeeeeecc
Confidence                                                           233322221   111  2378999999999777


Q ss_pred             CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc
Q 015290          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (409)
Q Consensus       229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  307 (409)
                      +|-+|++| .|.++++|.++ .+..... .  .....+|...|.+++++..+..+|+++|.|+++++|++...+.... .
T Consensus       376 ~g~llat~sKD~svilWr~~-~~~~~~~-~--~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~  450 (775)
T KOG0319|consen  376 SGDLLATGSKDKSVILWRLN-NNCSKSL-C--VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-P  450 (775)
T ss_pred             cCcEEEEecCCceEEEEEec-CCcchhh-h--hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-c
Confidence            78899999 99999999985 2221111 0  0126789999999999998888999999999999999987432111 1


Q ss_pred             ccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccc
Q 015290          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  386 (409)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (409)
                      -.+.       .+.....|...|++++.+|+.+++|||+ |++.+||++. +...+.++.+|...+              
T Consensus       451 ~~~~-------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGv--------------  508 (775)
T KOG0319|consen  451 IVLT-------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGV--------------  508 (775)
T ss_pred             ceeh-------hhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccce--------------
Confidence            1111       1223457889999999999999999998 5999999998 489999999999986              


Q ss_pred             eeeEEEcCCCCeEEEcccCCCC
Q 015290          387 KFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       387 v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +++.|+|..+.|||+|.|++|
T Consensus       509 -w~V~Fs~~dq~laT~SgD~Tv  529 (775)
T KOG0319|consen  509 -WCVSFSKNDQLLATCSGDKTV  529 (775)
T ss_pred             -EEEEeccccceeEeccCCceE
Confidence             799999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.6e-30  Score=219.60  Aligned_cols=265  Identities=19%  Similarity=0.287  Sum_probs=198.2

Q ss_pred             CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .+....|+..|+++++.|.|..|++|+.|.+|++||+++....                    .+.++.+.-...     
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~-----  214 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCET-----  214 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCcccc-----
Confidence            3444557899999999999999999999999999999976641                    111222222233     


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               ..|++++|  ++.|..|++.+.....+|+|-...+.....+                              
T Consensus       215 ---------h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K------------------------------  253 (641)
T KOG0772|consen  215 ---------HQINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSK------------------------------  253 (641)
T ss_pred             ---------cccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeec------------------------------
Confidence                     46999999  7899999999999999999987766554432                              


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                               |...|-|+..          .++|...++|.+|+|.. +.++++ .||++++||+......++++..+.  
T Consensus       254 ---------GDQYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--  312 (641)
T KOG0772|consen  254 ---------GDQYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--  312 (641)
T ss_pred             ---------cchhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--
Confidence                     1222223322          27999999999999974 556677 999999999996666666643332  


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc--ceeeeEeccCCC
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQ  340 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~  340 (409)
                      ..+..-.+++++|+|+| ++||+|..||.|.+|+.++..... ...+             -..|..  .|+++.||+||+
T Consensus       313 ~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p-~~~v-------------k~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRP-VMKV-------------KDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             CCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccccc-ceEe-------------eeccCCCCceeEEEeccccc
Confidence            44566789999999999 999999999999999986532110 0111             123444  899999999999


Q ss_pred             EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      +|++-+ |+++++||++...+++.+..+-....             .-+.++||||.++|++|+.
T Consensus       378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             hhhhccCCCceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEeccc
Confidence            999976 69999999998778887776654432             1258999999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.4e-30  Score=212.07  Aligned_cols=288  Identities=17%  Similarity=0.179  Sum_probs=212.0

Q ss_pred             eeeehhccCCCCCccccCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290           14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (409)
Q Consensus        14 w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (409)
                      =|+-+.|..+....+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....                           
T Consensus        48 tKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------  100 (433)
T KOG0268|consen   48 TKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------  100 (433)
T ss_pred             HHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------------------
Confidence            3556677777777888899999999999966 789999999999999998765                           


Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                      +..++++|.            +.|..|.+  +.  ..+++++.|++|+.|.+... ....+.              .+..
T Consensus       101 ~~~~f~AH~------------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~-p~~til--------------g~s~  149 (433)
T KOG0268|consen  101 CIRTFKAHE------------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL--------------GKSV  149 (433)
T ss_pred             hhheeeccc------------CceeeEEe--cc--cceEEecCCcceeeeeccCC-cceeee--------------cccc
Confidence            467889999            99999999  33  68999999999999998763 111111              1111


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCC
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISD  250 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~  250 (409)
                      +....-+.....++++    +-.|.|||.+-   ..+++.+ .-.-..|.++.|+|-. ..|+++ .|+.|.|||++ ..
T Consensus       150 ~~gIdh~~~~~~FaTc----Ge~i~IWD~~R---~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-~~  220 (433)
T KOG0268|consen  150 YLGIDHHRKNSVFATC----GEQIDIWDEQR---DNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLR-QA  220 (433)
T ss_pred             cccccccccccccccc----Cceeeeccccc---CCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecc-cC
Confidence            1111111111111111    22799999865   3445544 3345678999999975 455667 99999999999 55


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      .+++.+-        ....-+.++|+|.+ ..|++|+.|..++.||++.-..   ++..             +.+|.+.|
T Consensus       221 ~Pl~KVi--------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~---p~~v-------------~~dhvsAV  275 (433)
T KOG0268|consen  221 SPLKKVI--------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR---PLNV-------------HKDHVSAV  275 (433)
T ss_pred             Cccceee--------eeccccceecCccc-cceeeccccccceehhhhhhcc---cchh-------------hcccceeE
Confidence            5554431        12334689999977 8999999999999999987431   1222             45678899


Q ss_pred             eeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+++|||.|+-+++|+ |.+|+||....         +|..      +.|+..+++.|+++.||.|.+|+++||+|++|
T Consensus       276 ~dVdfsptG~EfvsgsyDksIRIf~~~~---------~~SR------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  276 MDVDFSPTGQEFVSGSYDKSIRIFPVNH---------GHSR------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             EEeccCCCcchhccccccceEEEeecCC---------Ccch------hhhhHhhhheeeEEEEeccccEEEecCCCcce
Confidence            9999999999999998 59999999874         2332      23444566677899999999999999999987

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.3e-28  Score=207.37  Aligned_cols=282  Identities=15%  Similarity=0.212  Sum_probs=202.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|...++-..|+|.|.|+|+|...|.|||||....+.                         -+..+++.-.        
T Consensus        57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-------------------------iLKnef~v~a--------  103 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-------------------------ILKNEFQVLA--------  103 (603)
T ss_pred             cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-------------------------eeeeeeeecc--------
Confidence            3888999999999999999999999999999876442                         1223444444        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEe--CCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce-
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILST--NDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-  184 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  184 (409)
                          ++|.+|+|  +.++++|++.+  .++  .+-+||--  ...-.+..+ .            ..+-++.+-+...+ 
T Consensus       104 ----G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG--~SvGei~Gh-S------------r~ins~~~KpsRPfR  162 (603)
T KOG0318|consen  104 ----GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSG--NSVGEITGH-S------------RRINSVDFKPSRPFR  162 (603)
T ss_pred             ----ccccccee--CCCCcEEEEEecCccceeEEEEecCC--Cccceeecc-c------------eeEeeeeccCCCceE
Confidence                89999999  89999988764  343  45556543  221111111 0            11112222222222 


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      +++++  .|+.+-+++-.   ..+....+ ..|...|+|+.|+|||++++++ .||+|.+||-. +++.+..+.    .-
T Consensus       163 i~T~s--dDn~v~ffeGP---PFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~----~~  231 (603)
T KOG0318|consen  163 IATGS--DDNTVAFFEGP---PFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELE----DS  231 (603)
T ss_pred             EEecc--CCCeEEEeeCC---Ceeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEec----CC
Confidence            22333  26677776532   12222333 7899999999999999999998 99999999998 676666531    13


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+|.+.|.+++|+||+ +.|++++.|.+++|||+.+.++    .+.+.... .         -......+.|-  ...|+
T Consensus       232 ~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~sl----v~t~~~~~-~---------v~dqqvG~lWq--kd~lI  294 (603)
T KOG0318|consen  232 DAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSL----VSTWPMGS-T---------VEDQQVGCLWQ--KDHLI  294 (603)
T ss_pred             CCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccce----EEEeecCC-c---------hhceEEEEEEe--CCeEE
Confidence            5899999999999999 9999999999999999998865    34444300 0         01234455665  34666


Q ss_pred             Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      +.+ .|.|.+++... ..++..+.+|...+               ++++.+||+++|.+|+.||.|+
T Consensus       295 tVSl~G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~  345 (603)
T KOG0318|consen  295 TVSLSGTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHIN  345 (603)
T ss_pred             EEEcCcEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEE
Confidence            665 59999999985 77999999999987               7999999999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.7e-29  Score=217.97  Aligned_cols=232  Identities=18%  Similarity=0.271  Sum_probs=196.4

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~  110 (409)
                      .+.|+++.|+++|.+||+|..+|.|.|||....+.                           +..+.+ |.         
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------------------------~~~~~~~h~---------  260 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------------------------TRTLRGSHA---------  260 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---------------------------cccccCCcC---------
Confidence            68999999999999999999999999999987664                           456667 77         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|-+++|  +  +..+.+|+.|+.|..+|++..+....                                      
T Consensus       261 ---~rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~--------------------------------------  295 (484)
T KOG0305|consen  261 ---SRVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS--------------------------------------  295 (484)
T ss_pred             ---ceeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence               89999999  3  66899999999999999987643211                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                           . +.+|...|..++|++|+.++|+| .|+.+.|||.. .......       +..|...
T Consensus       296 ---------------------~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~-------~~~H~aA  345 (484)
T KOG0305|consen  296 ---------------------T-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFT-------FTEHTAA  345 (484)
T ss_pred             ---------------------h-hhcccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEE-------Eecccee
Confidence                                 0 27899999999999999999999 99999999996 3333333       5789999


Q ss_pred             eEEEEEeCCCCCEEEEEe--CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e
Q 015290          270 ITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~  346 (409)
                      |.+++|+|-...+||+|+  .|++|++||..+++..    .....              ...|..+.|++..+-|+++ +
T Consensus       346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecC
Confidence            999999999878999875  7999999999987642    33333              4689999999998766664 3


Q ss_pred             --cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 --~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                        ++.|.||++.+ .+.+..+.+|...+               ..+++||||..+++|+.|.++
T Consensus       408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  408 YSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             CCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcE
Confidence              39999999986 88899999999986               699999999999999999875

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.3e-28  Score=220.23  Aligned_cols=270  Identities=14%  Similarity=0.181  Sum_probs=189.3

Q ss_pred             eeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeee
Q 015290           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (409)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (409)
                      ||..+|+..  .+.-.|...|.....++|+..+++++.+..+..|+..++....       .+...+     ..+  ...
T Consensus         5 k~rh~~g~~--~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~-------~~~~~G-----~~~--~~~   68 (493)
T PTZ00421          5 RFRHTQGVP--ARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL-------KHTDYG-----KLA--SNP   68 (493)
T ss_pred             ccccccccc--CCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEe-------eccccc-----cCC--CCC
Confidence            455666653  2333366777878888887778888888888889876543100       000000     000  011


Q ss_pred             eeecCCCccccccccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (409)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (409)
                      ..+.+|.            +.|.+++|  +| ++++|++|+.|++|++||+.++......                    
T Consensus        69 ~~l~GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~--------------------  114 (493)
T PTZ00421         69 PILLGQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNI--------------------  114 (493)
T ss_pred             ceEeCCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCcccccc--------------------
Confidence            2367888            89999999  56 7889999999999999999765321100                    


Q ss_pred             eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCc
Q 015290          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                                                       ..++..+ .+|...|.+++|+|++ ++|++| .|++|+|||++ .+.
T Consensus       115 ---------------------------------~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~  159 (493)
T PTZ00421        115 ---------------------------------SDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGK  159 (493)
T ss_pred             ---------------------------------CcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCe
Confidence                                             1222233 7899999999999985 688898 99999999998 565


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc-ce
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SI  330 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  330 (409)
                      ....       +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.    +..+..             |.. ..
T Consensus       160 ~~~~-------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~-------------H~~~~~  214 (493)
T PTZ00421        160 AVEV-------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEA-------------HASAKS  214 (493)
T ss_pred             EEEE-------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEec-------------CCCCcc
Confidence            5554       57899999999999999 9999999999999999998753    233333             222 34


Q ss_pred             eeeEeccCCCEEEEee-----cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc-
Q 015290          331 SDIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-  404 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~-  404 (409)
                      ..+.|.+++..+++++     |+.|++||++....++.....+....              +....|++|+.+|++++. 
T Consensus       215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkg  280 (493)
T PTZ00421        215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKG  280 (493)
T ss_pred             eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeC
Confidence            5678899887776542     48999999986445555544333221              135679999999998874 


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      ||+|
T Consensus       281 Dg~I  284 (493)
T PTZ00421        281 EGNI  284 (493)
T ss_pred             CCeE
Confidence            8765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=6.8e-30  Score=211.38  Aligned_cols=283  Identities=16%  Similarity=0.241  Sum_probs=215.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|.+.|..+.|-++...|++|+.|..|++|++...+.                         ..+.++.|-.       
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~-------  219 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL-------  219 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC-------
Confidence            34899999999999988999999999999999986652                         2345566666       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ++|+++.|  .++++++++++.|+.+++|++...+....... +...++++.+......+++..           
T Consensus       220 -----g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs-----------  280 (459)
T KOG0288|consen  220 -----GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSRVVSGS-----------  280 (459)
T ss_pred             -----CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhccccceeecc-----------
Confidence                 88999999  79999999999999999999998877766655 444455555544444333322           


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                         .|.++++||+..   ..|.++++.+.  .+..+..+  ...+++| .|+.|++||.+ ...+...       .+.+ 
T Consensus       281 ---~DRtiK~WDl~k---~~C~kt~l~~S--~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~s-------v~~g-  341 (459)
T KOG0288|consen  281 ---ADRTIKLWDLQK---AYCSKTVLPGS--QCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRS-------VPLG-  341 (459)
T ss_pred             ---ccchhhhhhhhh---hheeccccccc--cccceEec--ceeeeecccccceEEEecc-CCceeeE-------eecC-
Confidence               288999999987   56666553332  33455544  5668889 99999999999 5555554       2333 


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      +.|+++..++++ ..+.+++.|.++.+.|+++.+.+    ..+..       ...+.+  ...+.+.|||++.|+|+|+ 
T Consensus       342 g~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA-------~g~k~a--sDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  342 GRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSA-------EGFKCA--SDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             cceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeec-------cccccc--cccceeEECCCCceeeeccC
Confidence            489999999999 88888899999999999997753    23322       111222  2488999999999999997 


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      ||.|+||++.+ +++...++......             .|++++|+|.|..|++++.++.++
T Consensus       408 dgsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~  456 (459)
T KOG0288|consen  408 DGSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVT  456 (459)
T ss_pred             CCcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceE
Confidence            59999999986 88887777655431             127999999999999999988653

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.4e-27  Score=216.97  Aligned_cols=220  Identities=14%  Similarity=0.155  Sum_probs=166.0

Q ss_pred             cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+|.+.|++++|+| ++++||+|+.||+|++||+.+....                    ....+++..+.+|.     
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~-----  125 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT-----  125 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC-----
Confidence            456999999999999 8899999999999999999765320                    00112456788998     


Q ss_pred             cccceeccceEEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                             ..|.+++|  +|++ .+|++++.|++|+|||+.+++....                                 
T Consensus       126 -------~~V~~l~f--~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~---------------------------------  163 (493)
T PTZ00421        126 -------KKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGKAVEV---------------------------------  163 (493)
T ss_pred             -------CcEEEEEe--CcCCCCEEEEEeCCCEEEEEECCCCeEEEE---------------------------------
Confidence                   89999999  5654 6899999999999999987643322                                 


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                  +.+|...|.+++|+|++.+|+++ .|+.|++||++ .+..+..       +.
T Consensus       164 ----------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-sg~~v~t-------l~  207 (493)
T PTZ00421        164 ----------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-DGTIVSS-------VE  207 (493)
T ss_pred             ----------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC-CCcEEEE-------Ee
Confidence                                        15688899999999999999999 99999999999 5655554       45


Q ss_pred             CccCc-eEEEEEeCCCCCEEEEEe----CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          265 DLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       265 ~~~~~-v~~~~~~p~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      +|.+. ...+.|.+++ ..+++++    .|+.|++||+++....   ......            .+...+....|++++
T Consensus       208 ~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~------------d~~~~~~~~~~d~d~  271 (493)
T PTZ00421        208 AHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDL------------DQSSALFIPFFDEDT  271 (493)
T ss_pred             cCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEecc------------CCCCceEEEEEcCCC
Confidence            66554 4567889987 6666543    4799999999875421   111111            012356667899999


Q ss_pred             CEEEEee--cCeEEEEEccCCCcceEEEec
Q 015290          340 QHLLSRD--YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       340 ~~l~sg~--~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      ++|++++  |+.|++||+.. ++++.....
T Consensus       272 ~~L~lggkgDg~Iriwdl~~-~~~~~~~~~  300 (493)
T PTZ00421        272 NLLYIGSKGEGNIRCFELMN-ERLTFCSSY  300 (493)
T ss_pred             CEEEEEEeCCCeEEEEEeeC-CceEEEeec
Confidence            9988764  69999999985 666655443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=6.7e-29  Score=198.43  Aligned_cols=305  Identities=16%  Similarity=0.163  Sum_probs=223.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|+.++.+.+|+|||.++|+|+.|..|+|.|++.....    ...+++.-  .   ........+++|-.|.       
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak----s~~~em~~--~---~~qa~hPvIRTlYDH~-------  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK----SKPKEMIS--G---DTQARHPVIRTLYDHV-------  172 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh----cchhhhcc--C---CcccCCceEeehhhcc-------
Confidence            349999999999999999999999999999999732210    00000000  0   0011223577788888       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|+++.|+  |....|++++.|++|++||+.....++-.+.           ......+.+..++|.+.++..|
T Consensus       173 -----devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~K~-----------~qd~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  173 -----DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAFKV-----------FQDTEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             -----Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHHHH-----------hhccceeeeEeecCCCceEEEe
Confidence                 899999995  7888999999999999999975543332211           1222345566677888888877


Q ss_pred             cccccceeEEEecCCcccceeeee--eccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKV--YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ..  -.++++||+++   .+|...  ....|.+.|+++.+++.+++.++| .||.|+|||-- ...++.++      -..
T Consensus       235 Td--Hp~~rlYdv~T---~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~------~~A  302 (430)
T KOG0640|consen  235 TD--HPTLRLYDVNT---YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTI------GNA  302 (430)
T ss_pred             cC--CCceeEEeccc---eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHH------Hhh
Confidence            63  44899999987   344322  225789999999999999999999 99999999987 67787764      345


Q ss_pred             cc-CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          266 LT-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       266 ~~-~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      |. ..|.+..|..+| +++++.+.|..+++|++.+++.    ++.+.+ ...       .+-..--+...|+....|++.
T Consensus       303 H~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~----l~~YtG-Ag~-------tgrq~~rtqAvFNhtEdyVl~  369 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRM----LKEYTG-AGT-------TGRQKHRTQAVFNHTEDYVLF  369 (430)
T ss_pred             cCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCce----EEEEec-CCc-------ccchhhhhhhhhcCccceEEc
Confidence            54 568999999999 9999999999999999999874    344433 100       000112244568888889988


Q ss_pred             eec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          345 RDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       345 g~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      -++  +.+.-||.++..+....-.+|.+.+               +.+.-||.+..+.+||.|-.
T Consensus       370 pDEas~slcsWdaRtadr~~l~slgHn~a~---------------R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  370 PDEASNSLCSWDARTADRVALLSLGHNGAV---------------RWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             cccccCceeeccccchhhhhhcccCCCCCc---------------eEEEeCCCCCceeeecccce
Confidence            875  8999999997444433444787775               68999999999999999865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.1e-28  Score=215.02  Aligned_cols=282  Identities=13%  Similarity=0.136  Sum_probs=222.3

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ....+|...|.+++++.+...+++|+ .+.++||+..+.+.                           ++++..      
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kc---------------------------iRTi~~------  412 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKC---------------------------IRTITC------  412 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcce---------------------------eEEecc------
Confidence            44556999999999999998888886 46899999997763                           343332      


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              +.+.+..|.  |.+.++++|...|.+.+||+..........             ..++.+-+....+++...
T Consensus       413 --------~y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-------------AHdgaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  413 --------GYILASKFV--PGDRYIVLGTKNGELQVFDLASASLVETIR-------------AHDGAIWSISLSPDNKGF  469 (888)
T ss_pred             --------ccEEEEEec--CCCceEEEeccCCceEEEEeehhhhhhhhh-------------ccccceeeeeecCCCCce
Confidence                    468888895  788899999999999999998876654433             123445555556666666


Q ss_pred             ecccccccceeEEEecCCccc--ceeeeee------ccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290          186 YHLEWTENMATKIANVGNSVH--ARCQKVY------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~~------~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (409)
                      .+++.  |.+|++|+......  +...+.+      ...-...|.|+++||||++|+.+ -|.++++|-+. +-+..-. 
T Consensus       470 vT~sa--DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD-tlKFfls-  545 (888)
T KOG0306|consen  470 VTGSA--DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD-TLKFFLS-  545 (888)
T ss_pred             EEecC--CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec-ceeeeee-
Confidence            66665  89999999864332  1111100      12345779999999999999999 99999999998 4333322 


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                            +.||.-+|.++.++||+ ++++|||.|..|++|-+.-|. |.   +.             |-+|...|.++.|-
T Consensus       546 ------LYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD-CH---KS-------------~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  546 ------LYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD-CH---KS-------------FFAHDDSVMSVQFL  601 (888)
T ss_pred             ------ecccccceeEEeccCCc-CeEEeccCCCceEEeccccch-hh---hh-------------hhcccCceeEEEEc
Confidence                  78999999999999999 999999999999999988765 31   22             34567899999999


Q ss_pred             cCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       337 ~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+..++.+++ |+.|+-||-.+ -..++.+.+|...+               ++++.+|+|.+++++|.|.+|
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev---------------~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEV---------------WCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             ccceeEEEecCcceEEeechhh-hhhheeeccchhee---------------eeeEEcCCCCeEEeccCCcee
Confidence            9988888877 59999999876 78899999999886               799999999999999999876

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.4e-28  Score=193.14  Aligned_cols=307  Identities=13%  Similarity=0.118  Sum_probs=200.4

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .+.+|.+.|++|+|+.||++||+++.|++|+||++.+-...                      +.++++.          
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----------------------eHr~~R~----------  128 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----------------------EHRCIRQ----------  128 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----------------------hhhHhhc----------
Confidence            34459999999999999999999999999999999875421                      1111110          


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCccccccccccc-ccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  184 (409)
                        +++- +..+.+.|  +||.+-++.+ -...++++|.+...+--. ..++.. .+-...|... ....+.....+...+
T Consensus       129 --nve~-dhpT~V~F--apDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~~~v-~~D~~~f~~kh~v~~i~iGiA~~~k~  201 (420)
T KOG2096|consen  129 --NVEY-DHPTRVVF--APDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSHHFV-HIDNLEFERKHQVDIINIGIAGNAKY  201 (420)
T ss_pred             --cccC-CCceEEEE--CCCcceEEEEEccCCEEEEEEeeecccCC-CCcccc-cccccccchhcccceEEEeecCCceE
Confidence              0011 34678899  6787766554 555689999764322100 000000 0000011111 122334444566677


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC--ceeeeeecCCC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS  261 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~  261 (409)
                      +.+++.  |..|.+|++..    +.+... ...+..-+..+++|+|++++++ ---.+++|.+-.++  .....  .+..
T Consensus       202 imsas~--dt~i~lw~lkG----q~L~~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev--~rvf  272 (420)
T KOG2096|consen  202 IMSASL--DTKICLWDLKG----QLLQSI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV--KRVF  272 (420)
T ss_pred             EEEecC--CCcEEEEecCC----ceeeee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh--hhhh
Confidence            777766  88999999973    555544 4444555677899999999987 77789999875222  11111  1123


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      .+.+|...|..++|+|+. ..+++.|.||.+++||+.-.-...+..+++..   .+   ..+..-.+....++++|.|+.
T Consensus       273 ~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~---g~---~pl~aag~~p~RL~lsP~g~~  345 (420)
T KOG2096|consen  273 SLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE---GS---APLHAAGSEPVRLELSPSGDS  345 (420)
T ss_pred             eeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhc---CC---cchhhcCCCceEEEeCCCCcE
Confidence            478999999999999998 99999999999999998653222222233322   00   001111233448999999999


Q ss_pred             EEEeecCeEEEEEccCCCcceEEEe-cccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          342 LLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       342 l~sg~~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      ||......+++|..+. ++....++ .|..-+               .+++|+++|+++|++++
T Consensus       346 lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  346 LAVSFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSISYSSDGKYIATCGD  393 (420)
T ss_pred             EEeecCCceEEEEccc-CccchhHHHhhcCce---------------eeEEecCCCcEEeeecc
Confidence            9988778999999886 66555443 354443               69999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.8e-28  Score=219.86  Aligned_cols=245  Identities=17%  Similarity=0.288  Sum_probs=197.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|++++|+||++++++|+.|++|+|||+....                          +.++++++|.       
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--------------------------~~~~~l~gH~-------  246 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--------------------------RNLKTLKGHS-------  246 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--------------------------eEEEEecCCC-------
Confidence            5699999999999999999999999999999994332                          2678899999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|++++|  +|+|+++++|+.|++|+|||+.++++......+.             ..+..+.+++++..+..+
T Consensus       247 -----~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  247 -----TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             -----CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc
Confidence                 89999999  6899999999999999999999988877765443             234555667777788777


Q ss_pred             cccccceeEEEecCCcccceeeeeecccccc--ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      +.  |+.+++||+.+.... +...+ .++..  +++++.|+|++++++++ .|+.+++||++ .......       +.+
T Consensus       307 s~--d~~i~vwd~~~~~~~-~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~-~~~~~~~-------~~~  374 (456)
T KOG0266|consen  307 SY--DGTIRVWDLETGSKL-CLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR-SGKSVGT-------YTG  374 (456)
T ss_pred             CC--CccEEEEECCCCcee-eeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc-CCcceee-------ecc
Confidence            54  999999999885432 34444 33333  59999999999999999 99999999999 5655555       355


Q ss_pred             ccC---ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCCCE
Q 015290          266 LTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQH  341 (409)
Q Consensus       266 ~~~---~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~  341 (409)
                      |..   .+.+...++.+ .++++|+.|+.|.+||+.++..    ...+..             | ...+..+.++|..++
T Consensus       375 ~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~----~~~l~~-------------h~~~~~~~~~~~~~~~~  436 (456)
T KOG0266|consen  375 HSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGI----LQRLEG-------------HSKAAVSDLSSHPTENL  436 (456)
T ss_pred             cCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccch----hhhhcC-------------CCCCceeccccCCCcCe
Confidence            544   34455667888 9999999999999999988543    233333             4 568899999999999


Q ss_pred             EEEee---cCeEEEEEcc
Q 015290          342 LLSRD---YMNLKLWDIR  356 (409)
Q Consensus       342 l~sg~---~~~v~iwd~~  356 (409)
                      +++++   |+.+++|...
T Consensus       437 ~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  437 IASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeecCcCCCceEEEecCC
Confidence            99886   5999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=177.59  Aligned_cols=302  Identities=19%  Similarity=0.276  Sum_probs=209.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ....|.+++|+|.|.+.|+|++..+.+|.........      |...+.      ...|..-....-+.|.         
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~------r~~hea------~~~pp~v~~kr~khhk---------   89 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL------RHAHEA------AKQPPSVLCKRNKHHK---------   89 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCc------cccccc------ccCCCeEEeeeccccC---------
Confidence            4789999999999999999999999999876543210      000000      0111111222334555         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceec----cCCCCCceee
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE----HNPPSFAHGY  186 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  186 (409)
                         +.|.|.+|  +|+|+++++++.|++|++..++...+...-.        .+.+.-.++.+...    .....+.+++
T Consensus        90 ---gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   90 ---GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             ---ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCc--------ceeeeecCCceeeeEEecCCCcCceEEE
Confidence               89999999  8999999999999999998877554332110        00111111222111    1122233444


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      +++ ..|..|.+-|...   ++..+.+ .+|.+.|.++ ++-++-++++| +|.+|++||++ -..++.+++.....-.-
T Consensus       157 s~g-agdc~iy~tdc~~---g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  157 SAG-AGDCKIYITDCGR---GQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             ecC-CCcceEEEeecCC---CCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCc
Confidence            433 2355777777765   6667776 8999999887 44468889999 99999999999 66677765433111111


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ..+.|.+++..|.| ++|++|-.|....+||++.++.    ++.             |..|...|.++.|+|...||+++
T Consensus       230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~----iq~-------------f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM----IQR-------------FHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce----eee-------------eCCCccceeEEEeCCCceEEEEe
Confidence            23679999999999 9999999999999999999864    233             34457899999999999999999


Q ss_pred             e-cCeEEEEEccCCCc-----ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 D-YMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      + |..|++-|++  +.     ++.....|....               ..+.|+|..-.+++.|.|.++
T Consensus       292 syd~~ikltdlq--gdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  292 SYDMKIKLTDLQ--GDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             cccceEEEeecc--cchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceE
Confidence            8 4999999986  33     233444555543               489999999989999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=212.43  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=142.1

Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      ++.+++|+..+   .+|++++   ..+.+.+..|-|.++++++| ..|.+.+||+. ....+.+       ...|.+.++
T Consensus       393 ~~SikiWn~~t---~kciRTi---~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Et-------i~AHdgaIW  458 (888)
T KOG0306|consen  393 GESIKIWNRDT---LKCIRTI---TCGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVET-------IRAHDGAIW  458 (888)
T ss_pred             CCcEEEEEccC---cceeEEe---ccccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhh-------hhcccccee
Confidence            45799999976   6888877   23378899999999999999 99999999998 6666655       678999999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccc-cccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCe
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  349 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~  349 (409)
                      +++.+||+ ..+++||.|.+|++||..--.. .....+.+..++..      --.-...|.++.+||||++||.+- |++
T Consensus       459 si~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r------tLel~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  459 SISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR------TLELEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             eeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccce------EEeccccEEEEEEcCCCcEEEEEeccCe
Confidence            99999999 9999999999999999753110 00000111110000      001146899999999999999995 799


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+||-+++ -+..-.+.||.-++               .++..|||++.++|||.|.+|
T Consensus       532 VkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnV  574 (888)
T KOG0306|consen  532 VKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNV  574 (888)
T ss_pred             EEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCce
Confidence            99999986 78888888999886               799999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=5.7e-29  Score=192.95  Aligned_cols=277  Identities=14%  Similarity=0.154  Sum_probs=221.4

Q ss_pred             ccccCCCcEEEEEECC---CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           27 EELQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~---~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      .=.+|..+|..++|+|   +|-+|++++.||.-.+-+-+++.                           .+.+|.||.  
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd---------------------------wigtfeghk--   59 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD---------------------------WIGTFEGHK--   59 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC---------------------------cEEeeeccC--
Confidence            3456999999999997   89999999999987777777666                           578999999  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                                ++|++...  +.+...-++++.|=+-++||.-++.....+..              .-.+..+.++.+..
T Consensus        60 ----------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhsf~h--------------khivk~~af~~ds~  113 (334)
T KOG0278|consen   60 ----------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHSFEH--------------KHIVKAVAFSQDSN  113 (334)
T ss_pred             ----------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhhhhh--------------hheeeeEEecccch
Confidence                      99999998  67777888999999999999988865543321              12234555666667


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                      .+.+|++  +..+|++|++...  .+...+ .+|.+.|..+.|....+.++++ .|++|++||.+ ++..++.+.     
T Consensus       114 ~lltgg~--ekllrvfdln~p~--App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~-----  182 (334)
T KOG0278|consen  114 YLLTGGQ--EKLLRVFDLNRPK--APPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLE-----  182 (334)
T ss_pred             hhhccch--HHHhhhhhccCCC--CCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEe-----
Confidence            7777776  7789999987632  233333 7999999999999989999998 99999999999 676666642     


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                         ....|+++.++++| .+|.+ ...+.|.+||..+-.+    ++.+..              ...|.+...+|+-..+
T Consensus       183 ---~~s~VtSlEvs~dG-~ilTi-a~gssV~Fwdaksf~~----lKs~k~--------------P~nV~SASL~P~k~~f  239 (334)
T KOG0278|consen  183 ---FNSPVTSLEVSQDG-RILTI-AYGSSVKFWDAKSFGL----LKSYKM--------------PCNVESASLHPKKEFF  239 (334)
T ss_pred             ---cCCCCcceeeccCC-CEEEE-ecCceeEEeccccccc----eeeccC--------------ccccccccccCCCceE
Confidence               33678999999999 76555 4567899999987553    344444              3578999999998888


Q ss_pred             EEeec-CeEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          343 LSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       343 ~sg~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|++ ..++.||..+ +..+..+ ++|.+++               .++.|+|||...|+||.||+|
T Consensus       240 VaGged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  240 VAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTI  291 (334)
T ss_pred             EecCcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceE
Confidence            88874 9999999997 7777776 8888876               699999999999999999987

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.6e-28  Score=217.00  Aligned_cols=249  Identities=13%  Similarity=0.203  Sum_probs=198.4

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.++|..++|+|++.++++|+.|-.|+||+..+.+                           ++-++.||-      
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr---------------------------clftL~GHl------   93 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR---------------------------CLFTLLGHL------   93 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccce---------------------------ehhhhcccc------
Confidence            34599999999999999999999999999999998765                           577889999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +-|+.+.||  +.-..++++|.|.+|+||+..++++......+.+ .+.|..            ++|....+.+
T Consensus        94 ------DYVRt~~FH--heyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAq------------FhptEDlIVS  152 (1202)
T KOG0292|consen   94 ------DYVRTVFFH--HEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQ------------FHPTEDLIVS  152 (1202)
T ss_pred             ------ceeEEeecc--CCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeec------------cCCccceEEE
Confidence                  899999995  7788999999999999999999998887665433 233333            3444444555


Q ss_pred             ccccccceeEEEecCCcc-----c--------------------ceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeE
Q 015290          188 LEWTENMATKIANVGNSV-----H--------------------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI  241 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i  241 (409)
                      ++.  |.+||+||+..-.     .                    -..++..+.+|+..|+.++|+|.-..+++| +|..|
T Consensus       153 aSL--DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV  230 (1202)
T KOG0292|consen  153 ASL--DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV  230 (1202)
T ss_pred             ecc--cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence            554  8899999996311     0                    112344458999999999999999999999 99999


Q ss_pred             EEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcc
Q 015290          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (409)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  321 (409)
                      ++|.+.. .+...+     .++.+|.+.|.++-|+|.. .++++.|.|+.|++||+.....    ++.++. .       
T Consensus       231 KlWrmne-tKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~----v~tfrr-e-------  291 (1202)
T KOG0292|consen  231 KLWRMNE-TKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS----VQTFRR-E-------  291 (1202)
T ss_pred             eEEEecc-ccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccc----eeeeec-c-------
Confidence            9999983 333322     3478999999999999998 9999999999999999987543    344433 1       


Q ss_pred             cccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          322 FFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       322 ~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                           ....+.++.+|..+++|+|-|+.+.+|.+.
T Consensus       292 -----ndRFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  292 -----NDRFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             -----CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence                 356888999999999999988666777765

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.5e-28  Score=210.61  Aligned_cols=235  Identities=17%  Similarity=0.263  Sum_probs=195.7

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .-+|.+..|-+-.+++++|+.|..|+||+..+.++                           +..|.+|.          
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek---------------------------V~~FeAH~----------   97 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK---------------------------VKTFEAHS----------   97 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEeccccee---------------------------eEEeeccc----------
Confidence            45888888988889999999999999999998874                           78899999          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        +-|++|+.|  |...+++++|.|-+|++||.+.+                                            
T Consensus        98 --DyIR~iavH--Pt~P~vLtsSDDm~iKlW~we~~--------------------------------------------  129 (794)
T KOG0276|consen   98 --DYIRSIAVH--PTLPYVLTSSDDMTIKLWDWENE--------------------------------------------  129 (794)
T ss_pred             --cceeeeeec--CCCCeEEecCCccEEEEeeccCc--------------------------------------------
Confidence              899999995  78889999999999999999765                                            


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                     ..|.++| .+|...|.+++|+|. .+.++++ -|++|++|.+. +..+..+       +.+|...
T Consensus       130 ---------------wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg-s~~~nfT-------l~gHekG  185 (794)
T KOG0276|consen  130 ---------------WACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG-SPHPNFT-------LEGHEKG  185 (794)
T ss_pred             ---------------eeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcC-CCCCcee-------eeccccC
Confidence                           2445555 899999999999995 5789999 99999999999 4445555       7899999


Q ss_pred             eEEEEEeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290          270 ITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (409)
Q Consensus       270 v~~~~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-  347 (409)
                      |+++.|-+.|. .+|++|+.|.+++|||..+.. |   +++++             +|...|..+.|+|.-.++++|++ 
T Consensus       186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-C---V~TLe-------------GHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-C---VQTLE-------------GHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             cceEEeccCCCcceEEecCCCceEEEeecchHH-H---HHHhh-------------cccccceEEEecCCCcEEEEecCC
Confidence            99999988663 599999999999999998865 3   34444             45788999999999999999985 


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |++|||+..+ -+...++...-..+               ++++-.+.+..++.|.+.|.|
T Consensus       249 GTvriWhs~T-y~lE~tLn~gleRv---------------W~I~~~k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  249 GTVRIWNSKT-YKLEKTLNYGLERV---------------WCIAAHKGDGKIAVGFDEGSV  293 (794)
T ss_pred             ccEEEecCcc-eehhhhhhcCCceE---------------EEEeecCCCCeEEEeccCCcE
Confidence            9999999876 45555554333332               788888888888888888765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-28  Score=188.72  Aligned_cols=250  Identities=16%  Similarity=0.233  Sum_probs=194.3

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      +.+|.+.|..+...-.|+.||||+.|++|+|+.+....                        +.+++.+|.||+      
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~------------------------~s~ll~~L~Gh~------   56 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG------------------------QSKLLAELTGHS------   56 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC------------------------CceeeeEecCCC------
Confidence            45699999999999999999999999999999998755                        224678999999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ++|..++|....-|..|++|+.||.|.||.-.+++..+...                                 
T Consensus        57 ------GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e---------------------------------   97 (299)
T KOG1332|consen   57 ------GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE---------------------------------   97 (299)
T ss_pred             ------CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh---------------------------------
Confidence                  99999999622368899999999999999998885544322                                 


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCc-eeeeeecCCCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNM  263 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~  263 (409)
                                                ...|...|++++|.|.  |-.|+++ .||.|.+.+.+..+. ....+      .
T Consensus        98 --------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki------~  145 (299)
T KOG1332|consen   98 --------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI------V  145 (299)
T ss_pred             --------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh------h
Confidence                                      1679999999999886  6678888 999999999985422 22221      5


Q ss_pred             cCccCceEEEEEeCC---C----------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          264 DDLTEVITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~---~----------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      ..|.-.|++++|.|-   |          .+.|++|+.|+.|+||+..+++-      .++         .++.+|.+.|
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w------~~e---------~~l~~H~dwV  210 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW------KLE---------RTLEGHKDWV  210 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch------hhh---------hhhhhcchhh
Confidence            779999999999986   2          14699999999999999988632      111         1256778999


Q ss_pred             eeeEeccCC----CEEEEeec-CeEEEEEccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          331 SDIKFANDG----QHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       331 ~~~~~s~~g----~~l~sg~~-~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +.++|.|.-    .+||+++. |+|.||-.+.+..+  ...++.....+               +.+.||+.|..|+.++
T Consensus       211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~---------------w~vSWS~sGn~LaVs~  275 (299)
T KOG1332|consen  211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV---------------WRVSWSLSGNILAVSG  275 (299)
T ss_pred             hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce---------------EEEEEeccccEEEEec
Confidence            999999963    47899985 99999987642221  11222222222               7999999999999998


Q ss_pred             cCCCC
Q 015290          404 YRRDN  408 (409)
Q Consensus       404 ~dg~i  408 (409)
                      .|+.|
T Consensus       276 GdNkv  280 (299)
T KOG1332|consen  276 GDNKV  280 (299)
T ss_pred             CCcEE
Confidence            88865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=201.86  Aligned_cols=234  Identities=18%  Similarity=0.254  Sum_probs=190.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      -.+.|.++.|-.||++||.|...|.|+|+|..+..                           .++.+.+|+         
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---------------------------iLR~~~ah~---------  110 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---------------------------ILRQLYAHQ---------  110 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHH---------------------------HHHHHhhcc---------
Confidence            46789999999999999999999999999955422                           356788999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         .+|..+.|+| .+++.|++|+.|+.+++||+.+...+.                                       
T Consensus       111 ---apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~---------------------------------------  147 (487)
T KOG0310|consen  111 ---APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQA---------------------------------------  147 (487)
T ss_pred             ---CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEE---------------------------------------
Confidence               8999999975 677888999999999999998875311                                       


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                            .+.+|.+.|.|.+|+|. +..+++| .||.|++||++.....+..        -.|..
T Consensus       148 ----------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------lnhg~  197 (487)
T KOG0310|consen  148 ----------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------LNHGC  197 (487)
T ss_pred             ----------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------ecCCC
Confidence                                  12789999999999996 4578889 9999999999954444433        35888


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      +|.++.+-|.| ..+++++ .+.+++||+.+|...   +..+             ..|...|+|+.+..++..|++|+ |
T Consensus       198 pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~ql---l~~~-------------~~H~KtVTcL~l~s~~~rLlS~sLD  259 (487)
T KOG0310|consen  198 PVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQL---LTSM-------------FNHNKTVTCLRLASDSTRLLSGSLD  259 (487)
T ss_pred             ceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCcee---hhhh-------------hcccceEEEEEeecCCceEeecccc
Confidence            99999999998 8888876 457999999866431   1111             22567899999999999999998 7


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.|++||+.. -+.+..+......                .+++.+||++.++.|-.||.+
T Consensus       260 ~~VKVfd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  260 RHVKVFDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             cceEEEEccc-eEEEEeeecccce----------------eeEEecCCCceEEEeccccee
Confidence            9999999764 7888888765554                599999999999999999865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.5e-28  Score=197.76  Aligned_cols=244  Identities=14%  Similarity=0.214  Sum_probs=204.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..+.|..|  +|||++|++++.||.|.+|+..+|++.+..+++...     .|.-.+..++...++.+..++++|+.  |
T Consensus       214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----~fMMmd~aVlci~FSRDsEMlAsGsq--D  284 (508)
T KOG0275|consen  214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----NFMMMDDAVLCISFSRDSEMLASGSQ--D  284 (508)
T ss_pred             cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhc-----ceeecccceEEEeecccHHHhhccCc--C
Confidence            56788999  899999999999999999999999988877766554     34445667778888999999999988  9


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                      |.|++|.+++   ++|++.|-.+|...|+|+.|+.|+..++++ .|.++++.-+. .+++++.       +.+|.+.|+.
T Consensus       285 GkIKvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKE-------frGHsSyvn~  353 (508)
T KOG0275|consen  285 GKIKVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKE-------FRGHSSYVNE  353 (508)
T ss_pred             CcEEEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHH-------hcCccccccc
Confidence            9999999987   899999877999999999999999999999 99999999999 7888876       8999999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEeec-CeE
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL  350 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~~-~~v  350 (409)
                      +.|.++| ..+++++.||+|++|+..+.+ |....+....              ..+|+++..-|.. ..++.+.. ++|
T Consensus       354 a~ft~dG-~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~--------------d~~vnsv~~~PKnpeh~iVCNrsntv  417 (508)
T KOG0275|consen  354 ATFTDDG-HHIISASSDGTVKVWHGKTTE-CLSTFKPLGT--------------DYPVNSVILLPKNPEHFIVCNRSNTV  417 (508)
T ss_pred             eEEcCCC-CeEEEecCCccEEEecCcchh-hhhhccCCCC--------------cccceeEEEcCCCCceEEEEcCCCeE
Confidence            9999999 999999999999999998876 4333232222              4678888888865 56666664 999


Q ss_pred             EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      +|.++.  |+.+..+..........            .+++.||.|.++.+.++|+.
T Consensus       418 ~imn~q--GQvVrsfsSGkREgGdF------------i~~~lSpkGewiYcigED~v  460 (508)
T KOG0275|consen  418 YIMNMQ--GQVVRSFSSGKREGGDF------------INAILSPKGEWIYCIGEDGV  460 (508)
T ss_pred             EEEecc--ceEEeeeccCCccCCce------------EEEEecCCCcEEEEEccCcE
Confidence            999986  89999987655432211            48999999999999999974

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.2e-26  Score=183.91  Aligned_cols=240  Identities=20%  Similarity=0.285  Sum_probs=185.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      -.+.|+++.|+++|.+|++++.|.+++|||..+++.                           +.++..+.         
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------------~~ti~skk---------   56 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------------VKTINSKK---------   56 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------------eeEeeccc---------
Confidence            367999999999999999999999999999998873                           45555555         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                         -.|..++|.  .....++.++.  |.+||..++.+++..+.                                    
T Consensus        57 ---yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl~dNkylRY------------------------------------   95 (311)
T KOG1446|consen   57 ---YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSLHDNKYLRY------------------------------------   95 (311)
T ss_pred             ---ccccEEEEe--cCCceEEEccCCCCCceEEEEeecCceEEE------------------------------------
Confidence               467788884  44445555554  78899988887765443                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                               +.||...|+.++.+|-++.++++ .|++|++||++ ..++...+.         .
T Consensus        96 -------------------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l~---------~  140 (311)
T KOG1446|consen   96 -------------------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLLN---------L  140 (311)
T ss_pred             -------------------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEEe---------c
Confidence                                     38999999999999999999999 99999999999 555554431         1


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..-..++|+|.| -+||++...+.|++||+|+-...  +...+.. .         .+.....+.+.|||||++|+.++.
T Consensus       141 ~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  141 SGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             CCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeC
Confidence            223468999999 99999988889999999974211  1122222 0         012357889999999999998876


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +.+++.|.-. |..+..+.++.......            ..++|+||++++++|+.||+|
T Consensus       208 ~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  208 ASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             CCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcE
Confidence             9999999865 88888888776642110            389999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.5e-26  Score=226.60  Aligned_cols=256  Identities=14%  Similarity=0.143  Sum_probs=188.4

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+...|.+++|+| ++.+||+++.||+|+|||+.+++                           .+..+.+|.      
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~------  575 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHE------  575 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---------------------------EEEEecCCC------
Confidence            33557899999988 57899999999999999998765                           466788998      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|++++|+| +++.+|++|+.|++|++||+.++........  ...+.++.+.           .+++..++.
T Consensus       576 ------~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~-----------~~~g~~lat  635 (793)
T PLN00181        576 ------KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFP-----------SESGRSLAF  635 (793)
T ss_pred             ------CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEe-----------CCCCCEEEE
Confidence                  8999999952 4788999999999999999988766544331  1122222221           234555666


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC-----CceeeeeecCCC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----DQCFNIVDMKPS  261 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~-----~~~~~~~~~~~~  261 (409)
                      ++.  |+.|++||+....  .+...+ .+|...|.++.|. ++..++++ .|++|++||++..     ...+..      
T Consensus       636 gs~--dg~I~iwD~~~~~--~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------  703 (793)
T PLN00181        636 GSA--DHKVYYYDLRNPK--LPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS------  703 (793)
T ss_pred             EeC--CCeEEEEECCCCC--ccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE------
Confidence            654  8999999997532  133344 6899999999997 67789998 9999999999732     123333      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                       +.+|...+..++|+|++ .+|++|+.|+.|++|+.......    ..+......+........|...|.+++|+|++.+
T Consensus       704 -~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        704 -FMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPV----LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             -EcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCce----EEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence             67899999999999999 99999999999999998654321    1111100011111112345568999999999999


Q ss_pred             EEEeec-CeEEEEEc
Q 015290          342 LLSRDY-MNLKLWDI  355 (409)
Q Consensus       342 l~sg~~-~~v~iwd~  355 (409)
                      |++|+. |.|+||++
T Consensus       778 lva~~~dG~I~i~~~  792 (793)
T PLN00181        778 LVAANSTGNIKILEM  792 (793)
T ss_pred             EEEecCCCcEEEEec
Confidence            999975 99999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=6.5e-28  Score=195.66  Aligned_cols=244  Identities=15%  Similarity=0.287  Sum_probs=183.6

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|++.|.|+.|.  .+.|++|+.|.+|+|||+++++                           ++.++-+|.      
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge---------------------------~l~tlihHc------  277 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE---------------------------PLNTLIHHC------  277 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---------------------------hhhHHhhhc------
Confidence            45699999999996  6799999999999999999988                           467788898      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|..+.|   .+| ++++++.|.+|.+||+..........           ........+.....+ ..++.+
T Consensus       278 ------eaVLhlrf---~ng-~mvtcSkDrsiaVWdm~sps~it~rr-----------VLvGHrAaVNvVdfd-~kyIVs  335 (499)
T KOG0281|consen  278 ------EAVLHLRF---SNG-YMVTCSKDRSIAVWDMASPTDITLRR-----------VLVGHRAAVNVVDFD-DKYIVS  335 (499)
T ss_pred             ------ceeEEEEE---eCC-EEEEecCCceeEEEeccCchHHHHHH-----------HHhhhhhheeeeccc-cceEEE
Confidence                  89999999   344 99999999999999997653211110           000111111111111 124555


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  |.++++|++.+   ..+++++ .+|+..|-|+.+.  ++++++| .|.+|++||+. .+.++++       +.+|
T Consensus       336 ASg--DRTikvW~~st---~efvRtl-~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~-~G~cLRv-------LeGH  399 (499)
T KOG0281|consen  336 ASG--DRTIKVWSTST---CEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE-CGACLRV-------LEGH  399 (499)
T ss_pred             ecC--CceEEEEeccc---eeeehhh-hcccccceehhcc--CeEEEecCCCceEEEEecc-ccHHHHH-------Hhch
Confidence            444  88999999977   7888887 9999999999884  8899999 99999999999 8888888       7999


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ..-|.++.|+.   +.+++|+.||+|++||+..+.........+        -...+..|.+.|..+.|..  ..+++++
T Consensus       400 EeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~--------Cl~~lv~hsgRVFrLQFD~--fqIvsss  466 (499)
T KOG0281|consen  400 EELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTL--------CLRTLVEHSGRVFRLQFDE--FQIISSS  466 (499)
T ss_pred             HHhhhheeecC---ceeeeccccceEEEEecccccCCcccccch--------HHHhhhhccceeEEEeecc--eEEEecc
Confidence            99999999984   679999999999999998764321110000        0112345678999999974  3555555


Q ss_pred             -cCeEEEEEccC
Q 015290          347 -YMNLKLWDIRM  357 (409)
Q Consensus       347 -~~~v~iwd~~~  357 (409)
                       |.+|-|||+..
T Consensus       467 HddtILiWdFl~  478 (499)
T KOG0281|consen  467 HDDTILIWDFLN  478 (499)
T ss_pred             CCCeEEEEEcCC
Confidence             59999999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=4e-27  Score=217.34  Aligned_cols=281  Identities=14%  Similarity=0.228  Sum_probs=196.3

Q ss_pred             CCcEEEEEECCCCCEEEEEe--cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      ...|.+++.+|||..+|||+  .||.++||+.+.-..      +..+...      .   --+.+.....|.        
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~------~---l~k~l~~m~~h~--------   69 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNE------N---LPKHLCTMDDHD--------   69 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhc------c---cchhheeecccc--------
Confidence            56799999999999999999  999999999763210      0000000      0   012345566777        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|+|+.|  ++||++||+|+.|+.|.||+...........                                  +
T Consensus        70 ----~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fg----------------------------------s  109 (942)
T KOG0973|consen   70 ----GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFG----------------------------------S  109 (942)
T ss_pred             ----CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCccccc----------------------------------c
Confidence                99999999  8999999999999999999987411000000                                  0


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .+.-..+.        ..+++..+ .+|...|..++|+|++.+|+++ .|++|.+||.. +...+.+       +.+|.+
T Consensus       110 ~g~~~~vE--------~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-tF~~~~v-------l~~H~s  172 (942)
T KOG0973|consen  110 TGGAKNVE--------SWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-TFELLKV-------LRGHQS  172 (942)
T ss_pred             cccccccc--------eeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccc-cceeeee-------eecccc
Confidence            00000111        12344444 8899999999999999999999 99999999999 5567766       799999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccc---------cccc----------------------
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA---------AESH----------------------  317 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~----------------------  317 (409)
                      .|..+.|+|-| ++||+-+.|++|++|++.+.......-+.|+..         .-+|                      
T Consensus       173 ~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie  251 (942)
T KOG0973|consen  173 LVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE  251 (942)
T ss_pred             cccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence            99999999999 999999999999999976532110000000000         0001                      


Q ss_pred             ----CCcccccccccceeeeEeccC-----CC------------EEEEee-cCeEEEEEccCCCcceEEEecccCccccc
Q 015290          318 ----GSKSFFTEIIASISDIKFAND-----GQ------------HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (409)
Q Consensus       318 ----~~~~~~~~~~~~i~~~~~s~~-----g~------------~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  375 (409)
                          .....|-||..++.+++|+|.     .+            .+|+|+ |++|-||.... .+++.....-...    
T Consensus       252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~----  326 (942)
T KOG0973|consen  252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK----  326 (942)
T ss_pred             cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC----
Confidence                011135689999999999982     11            456676 59999999865 5665554322111    


Q ss_pred             ccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       376 ~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                                .|.+++|+|||..|..||.||+|
T Consensus       327 ----------SI~DmsWspdG~~LfacS~DGtV  349 (942)
T KOG0973|consen  327 ----------SIVDMSWSPDGFSLFACSLDGTV  349 (942)
T ss_pred             ----------ceeeeeEcCCCCeEEEEecCCeE
Confidence                      12699999999999999999987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.6e-28  Score=214.91  Aligned_cols=238  Identities=19%  Similarity=0.333  Sum_probs=190.8

Q ss_pred             cEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        34 ~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      .+..|+|+. +.++|||++..|.|.+||+.....                        .+.+..|..|+           
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------nk~l~~f~EH~-----------  133 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------------------------NKLLTVFNEHE-----------  133 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc------------------------chhhhHhhhhc-----------
Confidence            345678876 678999999999999999986221                        12356688898           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ..|.++.|+ +....+|++|+.||+|++||++..+.....                                       
T Consensus       134 -Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~---------------------------------------  172 (839)
T KOG0269|consen  134 -RSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTF---------------------------------------  172 (839)
T ss_pred             -cceeeeeec-cCCccEEEecCCCceEEEEeeecccccccc---------------------------------------
Confidence             899999998 467779999999999999999876543321                                       


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                            .+....|+.|+|+|. +..++++ +.|.+.+||++....+...       +..|.++|
T Consensus       173 ----------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k-------~~AH~GpV  223 (839)
T KOG0269|consen  173 ----------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK-------LTAHNGPV  223 (839)
T ss_pred             ----------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH-------hhcccCce
Confidence                                  345567899999985 6788888 9999999999977766654       78999999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE-EEEee---
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD---  346 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~sg~---  346 (409)
                      .++.|+|++ .+||+|+.|+.|+|||+.+.+..  .....+.              ..++.++.|-|+.++ ||+++   
T Consensus       224 ~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~  286 (839)
T KOG0269|consen  224 LCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVV  286 (839)
T ss_pred             EEEeecCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccc
Confidence            999999988 99999999999999999875431  1122222              468999999998764 55554   


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcccCCCC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s~dg~i  408 (409)
                      |-.|+|||++.+--+..++..|...+               +.++|.. |-..|.+++.||+|
T Consensus       287 dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  287 DTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             cceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHH
Confidence            48999999997677889999999876               6899986 55678899999976

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.6e-27  Score=181.33  Aligned_cols=196  Identities=20%  Similarity=0.277  Sum_probs=157.5

Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      .++.+..++|++ ...+.+++++.||++++||+...                                            
T Consensus        59 ~~D~LfdV~Wse-~~e~~~~~a~GDGSLrl~d~~~~--------------------------------------------   93 (311)
T KOG0277|consen   59 TEDGLFDVAWSE-NHENQVIAASGDGSLRLFDLTMP--------------------------------------------   93 (311)
T ss_pred             cccceeEeeecC-CCcceEEEEecCceEEEeccCCC--------------------------------------------
Confidence            337899999964 33457889999999999994321                                            


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                     ..+++.+ +.|...|.++.|++. ++.++++ .|++|++|+.. ....+.+       +.+|...
T Consensus        94 ---------------s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~  149 (311)
T KOG0277|consen   94 ---------------SKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSC  149 (311)
T ss_pred             ---------------CcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccE
Confidence                           1334444 889999999999985 5566777 99999999998 6666766       7899999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-c
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-Y  347 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~  347 (409)
                      |+..+|+|..+++|+++|.|+.+++||++....   . ..+             ..|...|.++.|+.-. ..|+||+ |
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~-~~i-------------~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---F-MSI-------------EAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCc---e-eEE-------------EeccceeEeecccccCCcEEEecCCC
Confidence            999999999889999999999999999987421   1 112             3346789999999854 5777886 6


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i  408 (409)
                      +.||.||+++-..++..+.+|+-.+               +.++|||- ...||+++.|=++
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~  259 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTV  259 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceE
Confidence            9999999998778899999998876               79999996 4588999998654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.2e-27  Score=199.69  Aligned_cols=256  Identities=18%  Similarity=0.197  Sum_probs=183.3

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce-eeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY-RYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~  110 (409)
                      ...|.++.|++.|..|++.+.....+|+|-++.+..        ++-...        +| +-+..-+||.         
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~--------e~~KGD--------QYI~Dm~nTKGHi---------  268 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV--------EFSKGD--------QYIRDMYNTKGHI---------  268 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceee--------eeeccc--------hhhhhhhccCCce---------
Confidence            458999999999999888888889999998765531        000000        00 0123346676         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee-eccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         ..++|.+|+| .+...|++++.|+++||||+.+.+.+.. +...                                 
T Consensus       269 ---a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k---------------------------------  311 (641)
T KOG0772|consen  269 ---AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK---------------------------------  311 (641)
T ss_pred             ---eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec---------------------------------
Confidence               8999999976 4556899999999999999986543221 1100                                 


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                             ...+..-+++.++|+|+++.+|+| .||.|.+|+.. ....-..+.+    -..|..
T Consensus       312 -----------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~-~~~v~p~~~v----k~AH~~  363 (641)
T KOG0772|consen  312 -----------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG-SRTVRPVMKV----KDAHLP  363 (641)
T ss_pred             -----------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecC-CcccccceEe----eeccCC
Confidence                                   013455678899999999999999 99999999986 2221111111    255665


Q ss_pred             --ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          269 --VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       269 --~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                        .|+++.|+++| ++|++-+.|+++++||++..+.+.   ..+..   -+.        ..+-+.++|||+.++|++|+
T Consensus       364 g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tg---L~t--------~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  364 GQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTG---LPT--------PFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             CCceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcC---CCc--------cCCCCccccCCCceEEEecc
Confidence              89999999999 999999999999999999866442   22222   000        23567899999999999873


Q ss_pred             -----c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 -----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 -----~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                           .  +.+.+||..+ -..+..+......+               ..+.|+|.-+.|..|+.||++
T Consensus       429 S~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~  481 (641)
T KOG0772|consen  429 SAPNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTA  481 (641)
T ss_pred             cccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCce
Confidence                 1  6799999875 55666655443332               589999998889999999875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.9e-27  Score=187.64  Aligned_cols=290  Identities=14%  Similarity=0.187  Sum_probs=214.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|+.++-......+.+++.|.+.+||.++++.                           ++..+.||.       
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------CL~~Y~GH~-------  190 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------CLATYTGHT-------  190 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeecccc---------------------------ceeeecccc-------
Confidence            4599999999998888899999999999999999887                           678899999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee----------eccCCC----cc-cc-----------
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------KEMDHF----PF-VS-----------  162 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------~~~~~~----~~-~~-----------  162 (409)
                           +.|++|.|  ++.+.++++++.|++..||...-.-....          .+....    +. ..           
T Consensus       191 -----GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  191 -----GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             -----cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence                 99999999  57888999999999999997321100000          000000    00 00           


Q ss_pred             -cccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCe
Q 015290          163 -SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (409)
Q Consensus       163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~  240 (409)
                       -..+....+.+..+.|-..+.-+..++.  |.+-.+||+++   +..+..+ .+|....+.+.-+|..++++++ .|.+
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSW--DRTAnlwDVEt---ge~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtT  337 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASW--DRTANLWDVET---GEVVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTT  337 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeec--cccceeeeecc---Cceeccc-cCcchhccccccCCcceEEEEeccCce
Confidence             0001111223334444444444455555  77889999988   4555554 8999999999999999999999 9999


Q ss_pred             EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc
Q 015290          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (409)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  320 (409)
                      .++||++..-..+.+       +.+|...|+++.|..+  ..+++|+.|.+|++||+++....   +..+..        
T Consensus       338 FRLWDFReaI~sV~V-------FQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsp---lATIRt--------  397 (481)
T KOG0300|consen  338 FRLWDFREAIQSVAV-------FQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSP---LATIRT--------  397 (481)
T ss_pred             eEeccchhhcceeee-------ecccccceeEEEEecC--CceeecCCCceEEEeeeccccCc---ceeeec--------
Confidence            999999944455555       7999999999999987  47899999999999999985432   344444        


Q ss_pred             ccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe-----cccCcccccccccCCCCccceeeEEEcC
Q 015290          321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (409)
Q Consensus       321 ~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~sp  394 (409)
                            ..+++.++.+..+..+|.--| ..|++||+.  |.-+..++     +|...+               .+++|..
T Consensus       398 ------dS~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~e  454 (481)
T KOG0300|consen  398 ------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLE  454 (481)
T ss_pred             ------CCccceeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccc
Confidence                  468999999988888888877 999999996  55554443     566554               6899986


Q ss_pred             CC--CeEEEcccCCCC
Q 015290          395 DG--LHFATGSYRRDN  408 (409)
Q Consensus       395 dg--~~l~s~s~dg~i  408 (409)
                      +-  .-|++|+.|..+
T Consensus       455 ehp~cnLftcGFDR~v  470 (481)
T KOG0300|consen  455 EHPACNLFTCGFDRMV  470 (481)
T ss_pred             cCccccccccccccee
Confidence            54  347788888754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=4.7e-26  Score=185.96  Aligned_cols=258  Identities=17%  Similarity=0.238  Sum_probs=183.4

Q ss_pred             cceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce
Q 015290           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (409)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (409)
                      ..|+..+  ++ ......+|++.|+++.|+-||.+||||+.+|.|+||+..++..                         
T Consensus        89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-------------------------  140 (399)
T KOG0296|consen   89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-------------------------  140 (399)
T ss_pred             EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-------------------------
Confidence            3466655  22 4566777999999999999999999999999999999998874                         


Q ss_pred             eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (409)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (409)
                        ...+..--            +.|.-+.||  |.+..|+.|+.||.+-+|.+.++...+++..+..+            
T Consensus       141 --~~~~~~e~------------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~------------  192 (399)
T KOG0296|consen  141 --QWKLDQEV------------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP------------  192 (399)
T ss_pred             --EEEeeccc------------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeEecCCCCC------------
Confidence              12222222            567788995  78999999999999999999986555554432221            


Q ss_pred             CceeccCCCCCceeecccccccceeEEEecCCcccc----------------------------------------eeee
Q 015290          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA----------------------------------------RCQK  211 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------------------------~~~~  211 (409)
                       +-...+.|++..+..+..  |++|++|+..+....                                        +.+.
T Consensus       193 -ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  193 -CTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             -cccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence             222233444555555554  889999998752210                                        0011


Q ss_pred             ee-------ccccccceeEEEeCC---CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC
Q 015290          212 VY-------PHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (409)
Q Consensus       212 ~~-------~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (409)
                      .+       ...+...+.++.+.|   .-.+.|+| -||+|.|||+. ......        .-.|...|..+.|-+ . 
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a-~~~~R~--------~c~he~~V~~l~w~~-t-  338 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA-ASTLRH--------ICEHEDGVTKLKWLN-T-  338 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc-cchhhe--------eccCCCceEEEEEcC-c-
Confidence            00       001222233333333   34567778 89999999998 332222        345888899999999 4 


Q ss_pred             CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       281 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      .+|++++.+|.|+.||.|+|++.    ..             +.+|...|.+++++|+.++++++++ ++.+|++..
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~----~~-------------y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLK----FT-------------YTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             chheeeccCceEEeeeccccceE----EE-------------EecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            79999999999999999999752    22             3567889999999999999999986 999999864

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.7e-25  Score=204.17  Aligned_cols=212  Identities=11%  Similarity=0.119  Sum_probs=153.1

Q ss_pred             cccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++...      ...             ...++..+.+|.     
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~------~~~-------------i~~p~~~L~gH~-----  125 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES------VKE-------------IKDPQCILKGHK-----  125 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc------ccc-------------cccceEEeecCC-----
Confidence            4459999999999996 789999999999999999764310      000             011345678888     


Q ss_pred             cccceeccceEEEEEEecCCCCE-EEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                             ..|.+++|  +|++.. |++++.|++|++||+.+++....                                 
T Consensus       126 -------~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~---------------------------------  163 (568)
T PTZ00420        126 -------KKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQ---------------------------------  163 (568)
T ss_pred             -------CcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEE---------------------------------
Confidence                   89999999  577765 57899999999999987754321                                 


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                   ..|...|.+++|+|+|.+|+++ .|+.|+|||++ .+..+..       +.
T Consensus       164 -----------------------------i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-sg~~i~t-------l~  206 (568)
T PTZ00420        164 -----------------------------INMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-KQEIASS-------FH  206 (568)
T ss_pred             -----------------------------EecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-CCcEEEE-------Ee
Confidence                                         1244678999999999999998 99999999999 6666655       56


Q ss_pred             CccCceEE-----EEEeCCCCCEEEEEeCCC----eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          265 DLTEVITS-----AEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       265 ~~~~~v~~-----~~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                      +|.+.+.+     ..|++++ .+|++++.|+    .|+|||+++....   +..+..           ..+.+.+.....
T Consensus       207 gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~p---l~~~~l-----------d~~~~~L~p~~D  271 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSA---LVTMSI-----------DNASAPLIPHYD  271 (568)
T ss_pred             cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCc---eEEEEe-----------cCCccceEEeee
Confidence            77765433     3355888 8888877664    7999999863221   222222           111233333444


Q ss_pred             ccCCCEEEEee-cCeEEEEEccC
Q 015290          336 ANDGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       336 s~~g~~l~sg~-~~~v~iwd~~~  357 (409)
                      .++|.++++|. |+.|++|++..
T Consensus       272 ~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        272 ESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             CCCCCEEEEEECCCeEEEEEccC
Confidence            55688888885 69999999975

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.5e-27  Score=197.88  Aligned_cols=234  Identities=18%  Similarity=0.288  Sum_probs=186.2

Q ss_pred             CCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+.|++++|+|... -+|+.+. -.+.||+..+...                           ..++..-.         
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~---------------------------~k~~srFk---------   68 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV---------------------------RKTFSRFK---------   68 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhh---------------------------hhhHHhhc---------
Confidence            58999999999443 3555553 4799999887653                           11222222         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|.++.|  -.||++|++|...|.|+++|..+....+.                                      
T Consensus        69 ---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~--------------------------------------  105 (487)
T KOG0310|consen   69 ---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ--------------------------------------  105 (487)
T ss_pred             ---cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH--------------------------------------
Confidence               78999999  58999999999999999999665332221                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                            + .+|+.++..+.|+|+++. +++| +|+.+++||+. +......       +.+|.+
T Consensus       106 ----------------------~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v~~~-------l~~htD  154 (487)
T KOG0310|consen  106 ----------------------L-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYVQAE-------LSGHTD  154 (487)
T ss_pred             ----------------------H-hhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEEEEE-------ecCCcc
Confidence                                  2 789999999999997655 5567 88999999998 4443222       789999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~  348 (409)
                      .|.+.+|+|..+.++++||.||.|++||++....     ...+.            .|..+|..+.+-|.|..+|+++.+
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el------------nhg~pVe~vl~lpsgs~iasAgGn  217 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL------------NHGCPVESVLALPSGSLIASAGGN  217 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEEe------------cCCCceeeEEEcCCCCEEEEcCCC
Confidence            9999999998868999999999999999998531     22222            236799999999999999999989


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|++||+.++++.+..+..|...+               +|+++..++..|++||-||.|
T Consensus       218 ~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~V  262 (487)
T KOG0310|consen  218 SVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHV  262 (487)
T ss_pred             eEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccce
Confidence            999999987677777777788776               799999999999999999976

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=8.1e-27  Score=185.68  Aligned_cols=200  Identities=19%  Similarity=0.291  Sum_probs=172.8

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                      +...+.+|+            +.|+.+.|  +|+|.+|++++.|..|.+|++.......                     
T Consensus        39 p~m~l~gh~------------geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~---------------------   83 (338)
T KOG0265|consen   39 PIMLLPGHK------------GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCENF---------------------   83 (338)
T ss_pred             hhhhcCCCc------------ceEEEEEE--CCCCCeEeecCCcceEEEEeccccccce---------------------
Confidence            455678888            99999999  6899999999999999999976432111                     


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                                                            .. +++|.+.|..+.|.+|+..++++ .|.+++.||.+ +++
T Consensus        84 --------------------------------------~~-lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~  123 (338)
T KOG0265|consen   84 --------------------------------------WV-LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGK  123 (338)
T ss_pred             --------------------------------------ee-eccccceeEeeeeccCCCEEEEecCCceEEEEecc-cce
Confidence                                                  11 26899999999999999999999 99999999999 777


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                      ..+.       +.+|...|+++.-+..|+.++.+++.|+++++||+|+...    +++++.              ...++
T Consensus       124 ~~rk-------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~~t~~~--------------kyqlt  178 (338)
T KOG0265|consen  124 RIRK-------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----IKTFEN--------------KYQLT  178 (338)
T ss_pred             eeeh-------hccccceeeecCccccCCeEEEecCCCceEEEEeecccch----hhcccc--------------ceeEE
Confidence            7765       7899999999997777878999999999999999998653    355544              46899


Q ss_pred             eeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          332 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       332 ~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++.|..++..+.+|+ |+.|++||++. ...+..+.||.+.+               +.+..+|+|.++.+-+.|.++
T Consensus       179 Av~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  179 AVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             EEEecccccceeeccccCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceE
Confidence            999999999999987 69999999986 88999999999987               799999999999999999875

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.9e-25  Score=203.94  Aligned_cols=230  Identities=18%  Similarity=0.275  Sum_probs=160.4

Q ss_pred             EecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecCC-CC
Q 015290           50 GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GS  128 (409)
Q Consensus        50 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~  128 (409)
                      |+.++.|++|+.....                           .+..+.+|.            +.|.+++|  +|+ +.
T Consensus        50 GG~~gvI~L~~~~r~~---------------------------~v~~L~gH~------------~~V~~laf--sP~~~~   88 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---------------------------PVIKLKGHT------------SSILDLQF--NPCFSE   88 (568)
T ss_pred             CCceeEEEeeecCCCc---------------------------eEEEEcCCC------------CCEEEEEE--cCCCCC
Confidence            5567788888865432                           466789999            89999999  565 78


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccce
Q 015290          129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  208 (409)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  208 (409)
                      +|++|+.|++|++||+.++.......                                                    ..
T Consensus        89 lLASgS~DgtIrIWDi~t~~~~~~~i----------------------------------------------------~~  116 (568)
T PTZ00420         89 ILASGSEDLTIRVWEIPHNDESVKEI----------------------------------------------------KD  116 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCCcccccc----------------------------------------------------cc
Confidence            99999999999999997642110000                                                    01


Q ss_pred             eeeeeccccccceeEEEeCCCCCeE-EEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE
Q 015290          209 CQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  286 (409)
Q Consensus       209 ~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  286 (409)
                      ++..+ .+|...|.+++|+|++..+ +++ .|++|++||++ .+.....       +. |...|.+++|+|+| .+|+++
T Consensus       117 p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~~~~-------i~-~~~~V~SlswspdG-~lLat~  185 (568)
T PTZ00420        117 PQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQ-------IN-MPKKLSSLKWNIKG-NLLSGT  185 (568)
T ss_pred             ceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-CCcEEEE-------Ee-cCCcEEEEEECCCC-CEEEEE
Confidence            11222 6799999999999998765 677 99999999999 5544433       22 45679999999999 999999


Q ss_pred             eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c----CeEEEEEccCCCcc
Q 015290          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----MNLKLWDIRMDSTP  361 (409)
Q Consensus       287 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~----~~v~iwd~~~~~~~  361 (409)
                      +.|+.|+|||+++++.    +..+..|.....        ...++...|++++.+|++++ +    +.|+|||++...++
T Consensus       186 s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~--------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p  253 (568)
T PTZ00420        186 CVGKHMHIIDPRKQEI----ASSFHIHDGGKN--------TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA  253 (568)
T ss_pred             ecCCEEEEEECCCCcE----EEEEecccCCce--------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence            9999999999998764    233444311000        01233345678988888754 4    37999999854677


Q ss_pred             eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +..+..+.....          +   ......++|.++++|+.|++|
T Consensus       254 l~~~~ld~~~~~----------L---~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        254 LVTMSIDNASAP----------L---IPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             eEEEEecCCccc----------e---EEeeeCCCCCEEEEEECCCeE
Confidence            766654443210          0   122234568899999999876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.4e-27  Score=205.37  Aligned_cols=250  Identities=21%  Similarity=0.375  Sum_probs=199.9

Q ss_pred             cCCCcEE---EEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           30 QDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        30 ~h~~~v~---~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      +|...|.   ++..+. .++||++|+.||.|++|++.....                     .|+..+...++.|.    
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------------~~s~~~~asme~Hs----   73 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------------EPSTPYIASMEHHS----   73 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccC---------------------CcccchhhhhhhhH----
Confidence            5666666   666665 667899999999999999875442                     12233566788888    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              +.|+++..+  .+++.|+++|.|-+|++|+...+..                                    
T Consensus        74 --------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~------------------------------------  107 (735)
T KOG0308|consen   74 --------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT------------------------------------  107 (735)
T ss_pred             --------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc------------------------------------
Confidence                    899999884  7888999999999999999876531                                    


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEe-CCCCCeEEEe-cCCeEEEEEccCCCc--eeeeeecC-C
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMK-P  260 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~-~  260 (409)
                                            .|..++ ..|.+.|.|+++ .++...+|+| -|+.|.+||+. .+.  .+..++.. .
T Consensus       108 ----------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin-~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen  108 ----------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN-TGTATLVASFNNVTV  163 (735)
T ss_pred             ----------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEcc-Ccchhhhhhcccccc
Confidence                                  112222 689999999999 7788888999 99999999998 442  22222211 1


Q ss_pred             CcCc-CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          261 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       261 ~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      ..+. ++...|++++.++.| ..|++|+..+.|++||.++.+      +.+..           .+|...|..+..++||
T Consensus       164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~------kimkL-----------rGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK------KIMKL-----------RGHTDNVRVLLVNDDG  225 (735)
T ss_pred             ccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc------ceeee-----------eccccceEEEEEcCCC
Confidence            2234 888999999999999 999999999999999999865      33333           4678899999999999


Q ss_pred             CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..+++++ ||+|++||+.. .+++.++..|...+               +++.-+|+=..+.+|+.||.|
T Consensus       226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcE
Confidence            9999885 69999999985 89999999999876               799999999999999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.6e-26  Score=190.42  Aligned_cols=296  Identities=13%  Similarity=0.146  Sum_probs=207.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~  109 (409)
                      |.-+|.+|+++|++++.++++.+|+|.=|++.++...      +...+...  +  ....+.....- ++|.        
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~------~~i~~~~e--v--~k~~~~~~k~~r~~h~--------  202 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD------RYIIERDE--V--LKSHGNPLKESRKGHV--------  202 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCccc------ccccccch--h--hhhccCCCCccccccc--------
Confidence            8889999999999999999999999999999988742      00000000  0  00011111111 3666        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++.  ++||++|++|+.|..|.||+..+.+.+.....+ ...+.++.|.......+++            +
T Consensus       203 ----keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~~lys~------------s  263 (479)
T KOG0299|consen  203 ----KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTSELYSA------------S  263 (479)
T ss_pred             ----ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCccceeee------------e
Confidence                88999999  899999999999999999999988766653322 2233444444443333333            3


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  |..+++|+++.   ...+.++ .+|++.|..+....-++.+.+| .|+++++|++....+.+         +.++.+
T Consensus       264 ~--Drsvkvw~~~~---~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~  328 (479)
T KOG0299|consen  264 A--DRSVKVWSIDQ---LSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEG  328 (479)
T ss_pred             c--CCceEEEehhH---hHHHHHH-hCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCC
Confidence            2  88999999975   2333444 7999999999988777777778 99999999997333333         577888


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc-ccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      .+.+++|-.+  ..|++||.+|.|.+|++...++.    .+.. .|...+...  -..+..+|++++..|...++|+|+.
T Consensus       329 sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~~--~~~~~~Witsla~i~~sdL~asGS~  400 (479)
T KOG0299|consen  329 SIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPELD--PVNGNFWITSLAVIPGSDLLASGSW  400 (479)
T ss_pred             CeeeEEEecc--cceeeccCCceEEEeeecccCce----eEeeccccccCCcc--ccccccceeeeEecccCceEEecCC
Confidence            9999999876  58999999999999999887642    2221 122222110  0112359999999999999999985


Q ss_pred             -CeEEEEEccCCC---cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          348 -MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       348 -~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                       |.|++|.+..+-   +++..++ -.+.+               .+++|+++|++|++|
T Consensus       401 ~G~vrLW~i~~g~r~i~~l~~ls-~~GfV---------------Nsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  401 SGCVRLWKIEDGLRAINLLYSLS-LVGFV---------------NSLAFSNSGKRIVAG  443 (479)
T ss_pred             CCceEEEEecCCccccceeeecc-cccEE---------------EEEEEccCCCEEEEe
Confidence             999999998632   3333343 22222               699999999976655

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.5e-27  Score=200.12  Aligned_cols=246  Identities=13%  Similarity=0.199  Sum_probs=190.2

Q ss_pred             eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC-ceeeeeeccCCCcccccccccccc
Q 015290           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAE  170 (409)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~  170 (409)
                      +.+.++.||.            ..|+++.|.| ..+.+|++++.|+.|+||++.. +.+.+.+..+..            
T Consensus       205 k~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k------------  259 (503)
T KOG0282|consen  205 KLSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK------------  259 (503)
T ss_pred             hheeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecCcceehhhhcchh------------
Confidence            3456788888            8999999964 4889999999999999999986 556555443322            


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccC
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~  248 (409)
                       .+..+.++..+..+.++++  |+.+++||+++   ++++..+  .....+.|+.|+|++ +.+++| .|+.|+.||++ 
T Consensus       260 -~Vrd~~~s~~g~~fLS~sf--D~~lKlwDtET---G~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-  330 (503)
T KOG0282|consen  260 -PVRDASFNNCGTSFLSASF--DRFLKLWDTET---GQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-  330 (503)
T ss_pred             -hhhhhhccccCCeeeeeec--ceeeeeecccc---ceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-
Confidence             2334445555555566666  99999999988   6777765  344567899999998 778888 99999999999 


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .++.++.       +..|-+.|..+.|-++| ..+++.+.|+.++||+.+.+...    +....            .+..
T Consensus       331 s~kvvqe-------Yd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~i----k~i~~------------~~~h  386 (503)
T KOG0282|consen  331 SGKVVQE-------YDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPI----KNIAD------------PEMH  386 (503)
T ss_pred             chHHHHH-------HHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccc----hhhcc------------hhhc
Confidence            7776655       67788999999999999 99999999999999999876432    11111            0123


Q ss_pred             ceeeeEeccCCCEEEEee-cCeEEEEEccCC--CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ...++..+|++.++++-+ ++.|.++.+...  ......+++|..+.+.             ..+.|||||++|++|+.|
T Consensus       387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsd  453 (503)
T KOG0282|consen  387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSD  453 (503)
T ss_pred             cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCC
Confidence            577899999999999987 599999987531  2345667788766532             389999999999999999


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      |.+
T Consensus       454 G~v  456 (503)
T KOG0282|consen  454 GKV  456 (503)
T ss_pred             ccE
Confidence            976

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.5e-25  Score=178.72  Aligned_cols=281  Identities=19%  Similarity=0.222  Sum_probs=198.6

Q ss_pred             CCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      -.+.|.+++||| ...+++.|+.||+||+|+++.....                         .-+....|.        
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------------------~~ka~~~~~--------   72 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------------------VPKAQQSHD--------   72 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------------------cchhhhccC--------
Confidence            368999999999 5566778999999999999874210                         113345566        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCC--CCCceeec
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAHGYH  187 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  187 (409)
                          ++|.+++|  +.||..+++|+.|+.+++||+.+++...+...              ++.+..+.+.  ..-..+++
T Consensus        73 ----~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H--------------d~pvkt~~wv~~~~~~cl~T  132 (347)
T KOG0647|consen   73 ----GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH--------------DAPVKTCHWVPGMNYQCLVT  132 (347)
T ss_pred             ----CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeeeeec--------------ccceeEEEEecCCCcceeEe
Confidence                99999999  79999999999999999999999977655331              2223333332  23357788


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      |+.  |.++++||++...   ++.+.  .....+.++..  ...+++.+ .++.|.+|+++......+.+      ....
T Consensus       133 GSW--DKTlKfWD~R~~~---pv~t~--~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~------~SpL  197 (347)
T KOG0647|consen  133 GSW--DKTLKFWDTRSSN---PVATL--QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRI------ESPL  197 (347)
T ss_pred             ccc--ccceeecccCCCC---eeeee--eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhh------cCcc
Confidence            888  9999999997533   22221  23344555543  34577788 99999999997332222221      1224


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-  345 (409)
                      .-.+++++..++. ..++.|+-+|.+.|..+..+..  +..-.+++|..... .   .+.-..|++++|+|.-..|+++ 
T Consensus       198 k~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~-~---~~~VYaVNsi~FhP~hgtlvTaG  270 (347)
T KOG0647|consen  198 KWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNS-V---NDDVYAVNSIAFHPVHGTLVTAG  270 (347)
T ss_pred             cceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCceeEEEeccCCC-C---CCceEEecceEeecccceEEEec
Confidence            4568899999998 7779999999999998887532  12245666532111 1   1123579999999987777765 


Q ss_pred             ecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       346 ~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      +||+..+||-+. ...+...+.|..++               ++++|+.+|.++|-+
T Consensus       271 sDGtf~FWDkda-r~kLk~s~~~~qpI---------------tcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  271 SDGTFSFWDKDA-RTKLKTSETHPQPI---------------TCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCceEEEecchh-hhhhhccCcCCCcc---------------ceeEecCCCCEEEEE
Confidence            689999999875 66777777788876               699999999998854

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=187.67  Aligned_cols=278  Identities=15%  Similarity=0.183  Sum_probs=212.3

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...++++...|....+++|+.|..+.++|....+                           .+..|+||.          
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------~l~~~~Gh~----------  261 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------ILATLKGHT----------  261 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhh---------------------------hhhhccCcc----------
Confidence            4578899999887889999999999999998776                           467899999          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..|+++.|  +++...+++++.|..|++|...........             .+.+..+.....++.+.++..++. 
T Consensus       262 --kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~~-------------~~h~~~V~~ls~h~tgeYllsAs~-  323 (506)
T KOG0289|consen  262 --KKITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTSS-------------RPHEEPVTGLSLHPTGEYLLSASN-  323 (506)
T ss_pred             --eEEEEEEe--ccchhheeecCCcceEEeeccccccCcccc-------------ccccccceeeeeccCCcEEEEecC-
Confidence              89999999  578889999999999999988655432221             123344455556677777777766 


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                       ++...+.|++..........  ...+-.+++.+|||||..|.+| .|+.+++||+. .......       +++|.++|
T Consensus       324 -d~~w~Fsd~~~g~~lt~vs~--~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk-s~~~~a~-------Fpght~~v  392 (506)
T KOG0289|consen  324 -DGTWAFSDISSGSQLTVVSD--ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK-SQTNVAK-------FPGHTGPV  392 (506)
T ss_pred             -CceEEEEEccCCcEEEEEee--ccccceeEEeeEcCCceEEeccCCCceEEEEEcC-Ccccccc-------CCCCCCce
Confidence             88888888876433222221  1233458999999999999999 99999999999 4444433       89999999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCe
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  349 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~  349 (409)
                      .+++|+.+| .+|++++.|+.|++||+|.-+.    .+.+.. .+           ...+.++.|.+.|+||+.++ +=.
T Consensus       393 k~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l-~~-----------~~~v~s~~fD~SGt~L~~~g~~l~  455 (506)
T KOG0289|consen  393 KAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQL-DE-----------KKEVNSLSFDQSGTYLGIAGSDLQ  455 (506)
T ss_pred             eEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeec-cc-----------cccceeEEEcCCCCeEEeecceeE
Confidence            999999999 9999999999999999998653    233333 00           13689999999999999885 356


Q ss_pred             EEEEEccC-CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          350 LKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       350 v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      |++++-.+ ...++..+..|.+..               +.+.|....++++++|.|..
T Consensus       456 Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  456 VYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             EEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhh
Confidence            66666332 234566666666443               58999999999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=2.1e-26  Score=188.88  Aligned_cols=264  Identities=14%  Similarity=0.203  Sum_probs=186.8

Q ss_pred             CccccCCCcEEEEEECCCC---CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc
Q 015290           26 DEELQDVDIVSAIEFDKTG---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~---~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (409)
                      ....+|.++|.+++|--..   ..|++++.|.++++|..+.++..                       .+.....+||. 
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------------~~~~~~~~GHk-  193 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------------VKALKVCRGHK-  193 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------------hhHHhHhcccc-
Confidence            3445699999988886533   35999999999999999877641                       12233456999 


Q ss_pred             cccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCC--------C---cccccccccccc-
Q 015290          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH--------F---PFVSSENTLLAE-  170 (409)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~-  170 (409)
                                 ..|.+|+.  .++|..+++|+.|.+|+||+..+...........        .   ..-..+...... 
T Consensus       194 -----------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  194 -----------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             -----------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence                       89999999  7999999999999999999943221110000000        0   000001111111 


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (409)
                      ..+.++.+.+ ...+++++.  |.+|+.||+++.   .++...  .....++++..+|..++|++| .|..|++||.+..
T Consensus       261 ~~Vs~V~w~d-~~v~yS~Sw--DHTIk~WDletg---~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSW--DHTIKVWDLETG---GLKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             cceeeEEEcC-CCceEeecc--cceEEEEEeecc---cceeee--ecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            1222233333 566666666  999999999873   333332  244678999999999999999 9999999999954


Q ss_pred             CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      ...+-.     ..+.+|.+.|.++.|+|..+..|++|+.|+++++||+|+.+-     .++.           +.+|...
T Consensus       333 ~gs~v~-----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----plyd-----------I~~h~DK  391 (423)
T KOG0313|consen  333 DGSVVS-----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----PLYD-----------IAGHNDK  391 (423)
T ss_pred             CCceeE-----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-----ccee-----------eccCCce
Confidence            433322     237899999999999999988999999999999999998652     1222           2456789


Q ss_pred             eeeeEeccCCCEEEEee-cCeEEEEEcc
Q 015290          330 ISDIKFANDGQHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       330 i~~~~~s~~g~~l~sg~-~~~v~iwd~~  356 (409)
                      |.++.|.. +.+|++|+ |++|+|+.-.
T Consensus       392 vl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  392 VLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEEeccC-CceEEeccCcceEEEeccc
Confidence            99999985 66888887 6999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=4.3e-25  Score=191.56  Aligned_cols=240  Identities=23%  Similarity=0.394  Sum_probs=186.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|...+..+.|+|++++|++++.||.|++|++.+++                           ....+..|.       
T Consensus        48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~---------------------------~~~~~~~~~-------   93 (289)
T cd00200          48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE---------------------------CVRTLTGHT-------   93 (289)
T ss_pred             ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc---------------------------ceEEEeccC-------
Confidence            3478889999999999999999999999999998754                           245567777       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.++.|  +++++++++++.|+.|++||+.+++.......+             ...+....+++...+++.+
T Consensus        94 -----~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~  153 (289)
T cd00200          94 -----SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-------------TDWVNSVAFSPDGTFVASS  153 (289)
T ss_pred             -----CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-------------CCcEEEEEEcCcCCEEEEE
Confidence                 78999999  577888888888999999999876655443311             1122333344445555555


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      .  .++.+++||+..   .+++..+ ..|...+.+++|+|+++.++++ .++.|++||++ .+.....       +..|.
T Consensus       154 ~--~~~~i~i~d~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~-------~~~~~  219 (289)
T cd00200         154 S--QDGTIKLWDLRT---GKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-TGKCLGT-------LRGHE  219 (289)
T ss_pred             c--CCCcEEEEEccc---cccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC-CCceecc-------hhhcC
Confidence            4  378999999975   3444444 5788899999999999999998 89999999998 5555544       45788


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..+.++.|+|++ .++++++.+|.|++||+.+++..    ..+.             .|...+.+++|+|++++|++++.
T Consensus       220 ~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         220 NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECV----QTLS-------------GHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeE----EEcc-------------ccCCcEEEEEECCCCCEEEEecC
Confidence            899999999997 89999888999999999875431    2222             33568999999999999999875


Q ss_pred             -CeEEEEE
Q 015290          348 -MNLKLWD  354 (409)
Q Consensus       348 -~~v~iwd  354 (409)
                       +.|++|+
T Consensus       282 d~~i~iw~  289 (289)
T cd00200         282 DGTIRIWD  289 (289)
T ss_pred             CCeEEecC
Confidence             9999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.2e-26  Score=180.11  Aligned_cols=209  Identities=19%  Similarity=0.308  Sum_probs=173.4

Q ss_pred             CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .+..++|+..|.+++|+.|.++|++|+.+..++|||++..+.                          +..++.+|.   
T Consensus        93 elhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------------------------pp~E~~ght---  143 (334)
T KOG0278|consen   93 ELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------------------------PPKEISGHT---  143 (334)
T ss_pred             hhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--------------------------CchhhcCCC---
Confidence            455677999999999999999999999999999999987664                          456789999   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               +.|..+.|+  ...+.|++++.|++||+||.+++.......                              
T Consensus       144 ---------g~Ir~v~wc--~eD~~iLSSadd~tVRLWD~rTgt~v~sL~------------------------------  182 (334)
T KOG0278|consen  144 ---------GGIRTVLWC--HEDKCILSSADDKTVRLWDHRTGTEVQSLE------------------------------  182 (334)
T ss_pred             ---------CcceeEEEe--ccCceEEeeccCCceEEEEeccCcEEEEEe------------------------------
Confidence                     999999997  556688888999999999999987665432                              


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                      ...+|+++.++++|++|.++..+.|.+||.. .-..++.++       
T Consensus       183 --------------------------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdak-sf~~lKs~k-------  222 (334)
T KOG0278|consen  183 --------------------------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK-SFGLLKSYK-------  222 (334)
T ss_pred             --------------------------------cCCCCcceeeccCCCEEEEecCceeEEeccc-cccceeecc-------
Confidence                                            3456899999999999988888999999998 555555432       


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                       -...|.+.+.+|+. ..+++|+.|..++.||..++...    ..+            -++|-++|.++.|+|||...|+
T Consensus       223 -~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi----~~~------------nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  223 -MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEI----GSY------------NKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             -CccccccccccCCC-ceEEecCcceEEEEEeccCCcee----eec------------ccCCCCceEEEEECCCCceeec
Confidence             23568899999998 99999999999999999998752    222            1456789999999999999999


Q ss_pred             eec-CeEEEEEccCCCcce
Q 015290          345 RDY-MNLKLWDIRMDSTPV  362 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~  362 (409)
                      |+. |+|+||.... ++..
T Consensus       285 GSEDGTirlWQt~~-~~~~  302 (334)
T KOG0278|consen  285 GSEDGTIRLWQTTP-GKTY  302 (334)
T ss_pred             cCCCceEEEEEecC-CCch
Confidence            985 9999999864 5443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.8e-25  Score=187.94  Aligned_cols=290  Identities=17%  Similarity=0.179  Sum_probs=207.4

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .+.|++|.|+|...+|++|+.||+++||.+++....                         .++.+.--.          
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~----------  257 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK----------  257 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence            578999999999999999999999999999877642                         222222222          


Q ss_pred             eccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                        .+|.+..|  .|+|+ .+++++....++.||+.+.+..++.......          ....-...-++.+.+++..+.
T Consensus       258 --fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e----------~~~~e~FeVShd~~fia~~G~  323 (514)
T KOG2055|consen  258 --FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE----------EKSMERFEVSHDSNFIAIAGN  323 (514)
T ss_pred             --Cccceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCcc----------cchhheeEecCCCCeEEEccc
Confidence              68999999  58998 8999999999999999988776654322111          111111222334445555444


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        .|.|.+....+.   +.+..+  .-.+.|..++|+.+++.|+++ .+|.|.+||++ ...+++.+      .....-.
T Consensus       324 --~G~I~lLhakT~---eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf------~D~G~v~  389 (514)
T KOG2055|consen  324 --NGHIHLLHAKTK---ELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRF------VDDGSVH  389 (514)
T ss_pred             --CceEEeehhhhh---hhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEE------eecCccc
Confidence              777877776552   333332  245778999999999988887 99999999999 55666654      1222223


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--  347 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--  347 (409)
                      -++++.++++ .+||+||..|.|.|||..+-..           ...|.+...+..-...|++++|+||+++||.++.  
T Consensus       390 gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~  457 (514)
T KOG2055|consen  390 GTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK  457 (514)
T ss_pred             eeeeeecCCC-ceEEeccCcceEEEeccchhhc-----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence            4678888999 9999999999999999765211           1123333334444678999999999999998763  


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                       ..+|+-.+.+ ......++.....+            -.|+|++|||.|.+||.|..+|.|.
T Consensus       458 knalrLVHvPS-~TVFsNfP~~n~~v------------g~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  458 KNALRLVHVPS-CTVFSNFPTSNTKV------------GHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             ccceEEEeccc-eeeeccCCCCCCcc------------cceEEEEecCCCceEEeecCCCcee
Confidence             8899999874 55555565544432            2348999999999999999999863

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=4.9e-26  Score=191.09  Aligned_cols=258  Identities=16%  Similarity=0.219  Sum_probs=186.3

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      +.|.+.|+.+.+-| +...+|+++..+.|.|||.........                 ...+.++-..+.||+      
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------------~~~~~~Pdl~L~gH~------  177 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------------ASGECRPDLRLKGHE------  177 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------------ccccCCCceEEEeec------
Confidence            34899999999999 456778888999999999875432100                 000223445688998      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.=.++.|.+ ...-.|++++.|++|++||+........                                   
T Consensus       178 ------~eg~glsWn~-~~~g~Lls~~~d~~i~lwdi~~~~~~~~-----------------------------------  215 (422)
T KOG0264|consen  178 ------KEGYGLSWNR-QQEGTLLSGSDDHTICLWDINAESKEDK-----------------------------------  215 (422)
T ss_pred             ------cccccccccc-ccceeEeeccCCCcEEEEeccccccCCc-----------------------------------
Confidence                  5577899964 3444899999999999999976532100                                   


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccC-CCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~~~~~~  264 (409)
                                        ...+... +.+|...|..++|++... .++++ .|+.+.|||++. ..++...       ..
T Consensus       216 ------------------~~~p~~~-~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-------~~  269 (422)
T KOG0264|consen  216 ------------------VVDPKTI-FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-------VK  269 (422)
T ss_pred             ------------------cccceEE-eecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-------cc
Confidence                              0012222 389999999999999754 45556 999999999994 2222222       68


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL  343 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~  343 (409)
                      +|.+.|.+++|+|-+..+||+||.|++|.+||+|+-..+   +..             +.+|...|.++.|||... .||
T Consensus       270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~-------------~e~H~dev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHT-------------FEGHEDEVFQVEWSPHNETVLA  333 (422)
T ss_pred             ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---cee-------------ccCCCcceEEEEeCCCCCceeE
Confidence            899999999999998789999999999999999985421   222             455688999999999864 566


Q ss_pred             Eee-cCeEEEEEccCCCc-------------ceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-EEEcccCCCC
Q 015290          344 SRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYRRDN  408 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~s~s~dg~i  408 (409)
                      +++ |+.+.+||+..-++             ++..-.||...+               ..+.|+|+..+ |+|.++|+.+
T Consensus       334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~L  398 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNIL  398 (422)
T ss_pred             ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceE
Confidence            554 69999999975222             233444555543               69999998775 6678888653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.2e-25  Score=170.73  Aligned_cols=234  Identities=17%  Similarity=0.217  Sum_probs=187.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|..++.+.|...|++|+.|..+.+||+.+++                           ..+.|++|.       
T Consensus        56 sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk---------------------------v~Rr~rgH~-------  101 (307)
T KOG0316|consen   56 SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK---------------------------VDRRFRGHL-------  101 (307)
T ss_pred             cCCCceeeeccccccccccccCCCCceEEEEEcccCe---------------------------eeeeccccc-------
Confidence            3488999999999999999999999999999999998                           478899999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|+.++|  +.+...+++|+.|.++++||.+....                                       
T Consensus       102 -----aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~---------------------------------------  135 (307)
T KOG0316|consen  102 -----AQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSF---------------------------------------  135 (307)
T ss_pred             -----ceeeEEEe--cCcceEEEeccccceeEEEEcccCCC---------------------------------------
Confidence                 89999999  68889999999999999999987643                                       


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                         ++++.+ ......|.++.++  +..+++| .||+++.||++ .+....         .-..
T Consensus       136 -------------------ePiQil-dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR-~G~l~s---------Dy~g  183 (307)
T KOG0316|consen  136 -------------------EPIQIL-DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR-KGTLSS---------DYFG  183 (307)
T ss_pred             -------------------Cccchh-hhhcCceeEEEec--ccEEEeeccCCcEEEEEee-cceeeh---------hhcC
Confidence                               333333 4556678888875  5678888 99999999999 555442         2234


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      .+|++++|++++ +..+.++.|+++++.|-.+|++    ++.+.+|..           ...-..++++.....+++|++
T Consensus       184 ~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGkl----L~sYkGhkn-----------~eykldc~l~qsdthV~sgSE  247 (307)
T KOG0316|consen  184 HPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKL----LKSYKGHKN-----------MEYKLDCCLNQSDTHVFSGSE  247 (307)
T ss_pred             CcceeEEecCCC-CEEEEeeccceeeecccchhHH----HHHhccccc-----------ceeeeeeeecccceeEEeccC
Confidence            689999999999 9999999999999999999886    355555321           123345677777789999985


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                       |.|++||+-. ...+..+..+...+              |.+++++|.-.-|+++...
T Consensus       248 DG~Vy~wdLvd-~~~~sk~~~~~~v~--------------v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  248 DGKVYFWDLVD-ETQISKLSVVSTVI--------------VTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             CceEEEEEecc-ceeeeeeccCCcee--------------EEeeecccCccceeEecCC
Confidence             9999999974 78888888777763              2689999986666555443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=9.1e-25  Score=174.82  Aligned_cols=280  Identities=15%  Similarity=0.129  Sum_probs=201.7

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .+.|++|.|+|.+..|+++++||++++||+...+.                            ...-.|.          
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----------------------------~~~~~~~----------   54 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----------------------------KLKFKHG----------   54 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----------------------------hhheecC----------
Confidence            57899999999999999999999999999987653                            1112344          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        .++.+.+|   .+...+++|+.||.|+.+|+.++....+..  +...+.|+......+.+++..|             
T Consensus        55 --~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~igt--h~~~i~ci~~~~~~~~vIsgsW-------------  114 (323)
T KOG1036|consen   55 --APLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQIGT--HDEGIRCIEYSYEVGCVISGSW-------------  114 (323)
T ss_pred             --Cceeeeec---cCCceEEEeccCceEEEEEecCCcceeecc--CCCceEEEEeeccCCeEEEccc-------------
Confidence              89999999   456689999999999999999886655432  2334455555555555555555             


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                       |++|++||...   ..+...+  .....|.++...  ++.|+.| .+..+.+||++......+.-      -...+..+
T Consensus       115 -D~~ik~wD~R~---~~~~~~~--d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r------eS~lkyqt  180 (323)
T KOG1036|consen  115 -DKTIKFWDPRN---KVVVGTF--DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR------ESSLKYQT  180 (323)
T ss_pred             -CccEEEEeccc---ccccccc--ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc------cccceeEE
Confidence             99999999975   1222222  334478887765  6788888 99999999999554444221      23345678


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCe
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  349 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~  349 (409)
                      .++++-|++ .=++.+|-||.|.+=.+..........-.|++|.......    ....+|++++|+|-.+.+|||+ ||.
T Consensus       181 R~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----~~~yPVNai~Fhp~~~tfaTgGsDG~  255 (323)
T KOG1036|consen  181 RCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----EIIYPVNAIAFHPIHGTFATGGSDGI  255 (323)
T ss_pred             EEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc----eEEEEeceeEeccccceEEecCCCce
Confidence            999999977 7788899999988755554422222224466653322211    1135899999999988999985 699


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      |-+||+.. .+.+..+...+..+               .+++|+.||..||.++.
T Consensus       256 V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  256 VNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence            99999985 77777776665544               48999999999998874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=3.9e-25  Score=201.26  Aligned_cols=267  Identities=16%  Similarity=0.208  Sum_probs=206.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +...+.+..|.  ..++++++.+++|++|+..++..                          ....+.||.         
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~---------  249 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHF---------  249 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCC---------
Confidence            56788888888  56889999999999999988763                          345599999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|.++++  ...+.++++|+.|.++++||..++++...+..+... +.++...              ...+..|++
T Consensus       250 ---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-v~~~~~~--------------~~~~~sgs~  309 (537)
T KOG0274|consen  250 ---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-VRCLTID--------------PFLLVSGSR  309 (537)
T ss_pred             ---CCceeEEE--ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-EEEEEcc--------------CceEeeccC
Confidence               99999999  345779999999999999999999988876643221 1111100              011222333


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        |.+|++|++++   ++++.++ .+|.++|+++..+  +.++++| .|++|++||+. ..+++..       +.+|...
T Consensus       310 --D~tVkVW~v~n---~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~s-------l~gH~~~  373 (537)
T KOG0274|consen  310 --DNTVKVWDVTN---GACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKS-------LSGHTGR  373 (537)
T ss_pred             --CceEEEEeccC---cceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeee-------ecCCcce
Confidence              88999999985   6777776 6799999999998  7899999 99999999999 8888887       7899999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      |+++.+.+.  ..+++|+.|+.|++||+++...|   +..+..             |..-+..+.+  .+++|++++ |+
T Consensus       374 V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---~~tl~~-------------h~~~v~~l~~--~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  374 VYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---IHTLQG-------------HTSLVSSLLL--RDNFLVSSSADG  433 (537)
T ss_pred             EEEEEecCc--ceEEeeeeccceEeecCCchhhh---hhhhcC-------------Cccccccccc--ccceeEeccccc
Confidence            999988875  68999999999999999987312   344444             3555655444  467899886 69


Q ss_pred             eEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|++||... ++++..+.++ ...+               +.+++.  ...+++++.||++
T Consensus       434 ~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~  476 (537)
T KOG0274|consen  434 TIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSV  476 (537)
T ss_pred             cEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCee
Confidence            999999986 8999999884 3433               355554  4567788888765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.2e-26  Score=189.75  Aligned_cols=245  Identities=16%  Similarity=0.199  Sum_probs=176.0

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ...+|..+|..+.||||.+||++|+.|..+++||+.++..       ++.+                   -.+|.     
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~-------~~~y-------------------~~~~~-----  312 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL-------RHLY-------------------PSGLG-----  312 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh-------hhhc-------------------ccCcC-----
Confidence            3456999999999999999999999999999999999874       1111                   12334     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ..+.+.+|+  |||..+++|+.|++|..||+++.....-.... .+            .+....-.+++..+.
T Consensus       313 -------~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~------------~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  313 -------FSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DP------------KVHDLAITYDGKYVL  370 (519)
T ss_pred             -------CCcceeEEc--cCCceeEecCCCCcEEEecCCcchhhcccccc-cc------------eeEEEEEcCCCcEEE
Confidence                   689999994  89999999999999999999865432211100 01            111111122223322


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ...  .|..+++++.++......     .....+|+++..+.+++++++. .+..+.+||++ ....+..       +.|
T Consensus       371 ~v~--~d~~i~l~~~e~~~dr~l-----ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~k-------Y~G  435 (519)
T KOG0293|consen  371 LVT--VDKKIRLYNREARVDRGL-----ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRK-------YFG  435 (519)
T ss_pred             EEe--cccceeeechhhhhhhcc-----ccccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHH-------hhc
Confidence            222  377899998876433322     2355789999999999999999 99999999999 4444433       566


Q ss_pred             ccCc--eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEE
Q 015290          266 LTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL  342 (409)
Q Consensus       266 ~~~~--v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l  342 (409)
                      |...  +-.-+|--....++++||.|+.|+||+..++++    +..             +.||...|++++|+|.. .++
T Consensus       436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl----l~~-------------LsGHs~~vNcVswNP~~p~m~  498 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL----LAV-------------LSGHSKTVNCVSWNPADPEMF  498 (519)
T ss_pred             ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----eEe-------------ecCCcceeeEEecCCCCHHHh
Confidence            6533  333445433337999999999999999999875    233             45567899999999976 577


Q ss_pred             EEeec-CeEEEEEcc
Q 015290          343 LSRDY-MNLKLWDIR  356 (409)
Q Consensus       343 ~sg~~-~~v~iwd~~  356 (409)
                      |+|+| |+||||...
T Consensus       499 ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  499 ASASDDGTIRIWGPS  513 (519)
T ss_pred             hccCCCCeEEEecCC
Confidence            88886 999999876

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.2e-24  Score=171.54  Aligned_cols=301  Identities=15%  Similarity=0.213  Sum_probs=203.8

Q ss_pred             CCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeee---eeecCCCccccc
Q 015290           31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK---TEFQSHEPEFDY  106 (409)
Q Consensus        31 h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~~~~  106 (409)
                      |.+.|+++...+ .|+|+++|+.||.|.+||+++...-        +-....+       ...++   ..-.+|.     
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~--------e~s~li~-------k~~c~v~~~h~~~Hk-----  101 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY--------EASGLIA-------KHKCIVAKQHENGHK-----  101 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccch--------hhcccee-------heeeeccccCCccce-----
Confidence            899999999998 7999999999999999999865410        0000000       00111   0113444     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC---CCc
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFA  183 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  183 (409)
                             -.|.++.|.| .|...|.+++.|+++++||.++-+....+++.              +.+.+-..++   .-.
T Consensus       102 -------y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me--------------~~VYshamSp~a~sHc  159 (397)
T KOG4283|consen  102 -------YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME--------------GKVYSHAMSPMAMSHC  159 (397)
T ss_pred             -------eeeeeeEEee-ecCceeecccccceEEEeecccceeeEEeecC--------------ceeehhhcChhhhcce
Confidence                   6899999998 56669999999999999999887765554432              1112212221   123


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCC-
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP-  260 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~-  260 (409)
                      .++.|..  +-.|++.|+..   +.+-.++ .+|.+.|.++.|+|..++++ +| .||.|++||++....++.+++... 
T Consensus       160 LiA~gtr--~~~VrLCDi~S---Gs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~  233 (397)
T KOG4283|consen  160 LIAAGTR--DVQVRLCDIAS---GSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT  233 (397)
T ss_pred             EEEEecC--CCcEEEEeccC---Ccceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence            4444443  66899999977   5555655 89999999999999988765 57 999999999995556777766432 


Q ss_pred             ------CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE
Q 015290          261 ------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (409)
Q Consensus       261 ------~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  334 (409)
                            ..-..|.+.|..++|+.++ .++++++.|..+++|+..+|+.........     ..+.+..+.-|   +.   
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-----~~n~~~~~~~~---~~---  301 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPI-----IHNQTTSFAVH---IQ---  301 (397)
T ss_pred             ccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccccccccc-----cccccccceEE---Ee---
Confidence                  1235688999999999999 999999999999999999876422111000     00011111111   11   


Q ss_pred             eccC-CCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          335 FAND-GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       335 ~s~~-g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +-+ +.++..-.++.+.++++-. +..+..+..|...+               .+.++.|+=+.+.+|..|++|
T Consensus       302 -~~~s~vfv~~p~~~~lall~~~s-gs~ir~l~~h~k~i---------------~c~~~~~~fq~~~tg~~d~ni  359 (397)
T KOG4283|consen  302 -SMDSDVFVLFPNDGSLALLNLLE-GSFVRRLSTHLKRI---------------NCAAYRPDFEQCFTGDMNGNI  359 (397)
T ss_pred             -ecccceEEEEecCCeEEEEEccC-ceEEEeeeccccee---------------eEEeecCchhhhhccccCCcc
Confidence             112 2233333348888888875 78888888885544               478888888888888888775

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-24  Score=172.35  Aligned_cols=263  Identities=12%  Similarity=0.201  Sum_probs=187.2

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+-|+++.|.+-|+.+|+|+.|++|+|||......                       .+++....+.|.       
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~-------   59 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD-------   59 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence            45899999999999999999999999999999865443                       677888899999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|..|.|.+..-|+.+++|+.|++++||.-........                                    
T Consensus        60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~------------------------------------   98 (361)
T KOG2445|consen   60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH------------------------------------   98 (361)
T ss_pred             -----CcEEEEEecCccccceEEEEecCCceeeeeecccccccc------------------------------------
Confidence                 999999998655689999999999999997642211110                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecC------
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMK------  259 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~------  259 (409)
                             -+-|         ..++.+......|+.+.|.|.  |-.|+++ .||.++||+.-.... +..+.+.      
T Consensus        99 -------~~~W---------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   99 -------GRRW---------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNV  161 (361)
T ss_pred             -------ccee---------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhc
Confidence                   0011         111122567788999999996  6778888 999999999762221 1111111      


Q ss_pred             CCcCcCccCceEEEEEeCCC--CCEEEEEeCC-----CeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          260 PSNMDDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~--~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      ......+.....|+.|+|..  +.+||.|+.+     +.+.||....+..      .+..       ...+.+|..+|+.
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r------Kw~k-------va~L~d~~dpI~d  228 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR------KWLK-------VAELPDHTDPIRD  228 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc------eeee-------ehhcCCCCCccee
Confidence            11123455677899999753  2588888766     4788887655421      1111       1224567899999


Q ss_pred             eEeccC-C---CEEEEeec-CeEEEEEccCCC-------------------cceEEEecccCcccccccccCCCCcccee
Q 015290          333 IKFAND-G---QHLLSRDY-MNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (409)
Q Consensus       333 ~~~s~~-g---~~l~sg~~-~~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (409)
                      ++|.|+ |   ..||+++. | |+||+++.-.                   +.+..+..|...+               +
T Consensus       229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------W  292 (361)
T KOG2445|consen  229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------W  292 (361)
T ss_pred             eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------E
Confidence            999997 2   46788874 7 9999987311                   1233344455443               8


Q ss_pred             eEEEcCCCCeEEEcccCCCC
Q 015290          389 ECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       389 ~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+.|.-.|..|++.+.||+|
T Consensus       293 rv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  293 RVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             EEEEeeeeeEEeecCCCcee
Confidence            99999999999999999987

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.9e-25  Score=175.02  Aligned_cols=245  Identities=18%  Similarity=0.265  Sum_probs=186.7

Q ss_pred             cccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (409)
Q Consensus        10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (409)
                      ....|.+.+.|...      .|..+|++++.+  +.|+|+|+.|-+|+|||+.....                       
T Consensus        27 ~s~~~~l~~lF~~~------aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------------   75 (362)
T KOG0294|consen   27 DSVKPTLKPLFAFS------AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------------   75 (362)
T ss_pred             cccceeeecccccc------ccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------
Confidence            33457777776542      399999999986  89999999999999999987663                       


Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                          +..+..|.            +.|+++.|.+......|++|+.||.|.+|+...-.+..                  
T Consensus        76 ----lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~------------------  121 (362)
T KOG0294|consen   76 ----LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK------------------  121 (362)
T ss_pred             ----hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee------------------
Confidence                45677888            99999999542223489999999999999987653322                  


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                                                                .+ .+|.+.|+.++.+|.++..++. .|+.+++||+- 
T Consensus       122 ------------------------------------------sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-  157 (362)
T KOG0294|consen  122 ------------------------------------------SL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-  157 (362)
T ss_pred             ------------------------------------------ee-cccccccceeEecCCCceEEEEcCCceeeeehhh-
Confidence                                                      22 7899999999999999988887 99999999998 


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .++.-...+++        ...+.+.|+|.| .+|+.++.++ |-+|.+.+.++.    .....              ..
T Consensus       158 ~Gr~a~v~~L~--------~~at~v~w~~~G-d~F~v~~~~~-i~i~q~d~A~v~----~~i~~--------------~~  209 (362)
T KOG0294|consen  158 RGRVAFVLNLK--------NKATLVSWSPQG-DHFVVSGRNK-IDIYQLDNASVF----REIEN--------------PK  209 (362)
T ss_pred             cCccceeeccC--------CcceeeEEcCCC-CEEEEEeccE-EEEEecccHhHh----hhhhc--------------cc
Confidence            55544443222        233569999999 8777777664 899998886532    22222              13


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEE--EcCCCCeEEEcccC
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYR  405 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~spdg~~l~s~s~d  405 (409)
                      .+.++.|.. +.+|++|.| +.|++||.+. ..++..+.+|...+.               ++.  -.|++.+|+|+|.|
T Consensus       210 r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSD  272 (362)
T KOG0294|consen  210 RILCATFLD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSD  272 (362)
T ss_pred             cceeeeecC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccC
Confidence            466777764 457777765 9999999875 899999999999863               444  34778999999999


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      |.|
T Consensus       273 G~I  275 (362)
T KOG0294|consen  273 GFI  275 (362)
T ss_pred             ceE
Confidence            987

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=9.2e-25  Score=183.62  Aligned_cols=248  Identities=18%  Similarity=0.220  Sum_probs=178.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++.++||+|||+|+.|..|.||+.++.+                           .+..+.+|.        
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e---------------------------hv~~~~ghr--------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE---------------------------HVKVFKGHR--------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc---------------------------hhhcccccc--------
Confidence            689999999999999999999999999999999887                           466789999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|.+++|  -.....|++++.|++|++|+++..........+..             .++....-.-...+..|.
T Consensus       245 ----~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-------------~v~~IdaL~reR~vtVGg  305 (479)
T KOG0299|consen  245 ----GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-------------GVLGIDALSRERCVTVGG  305 (479)
T ss_pred             ----cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-------------ceeeechhcccceEEecc
Confidence                99999999  46667899999999999999987655443322211             111111111111122222


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC-----
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-----  263 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~-----  263 (409)
                        .|.++++|++..    ....+ +.++.+.+-|++|-.+ ..+++| .+|.|.+|++. ..+++.+........     
T Consensus       306 --rDrT~rlwKi~e----esqli-frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~-KKkplf~~~~AHgv~~~~~~  376 (479)
T KOG0299|consen  306 --RDRTVRLWKIPE----ESQLI-FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLL-KKKPLFTSRLAHGVIPELDP  376 (479)
T ss_pred             --ccceeEEEeccc----cceee-eeCCCCCeeeEEEecc-cceeeccCCceEEEeeec-ccCceeEeeccccccCCccc
Confidence              388999999932    22222 3788999999999754 468888 99999999998 566665543321111     


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ..+..+|++++..|.. .++++|+.+|.|++|-+..+-.....+..+..              .+.|++++|+++|++|+
T Consensus       377 ~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--------------~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  377 VNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--------------VGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             cccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeeccc--------------ccEEEEEEEccCCCEEE
Confidence            1233589999999988 99999999999999999887322222222222              46899999999999888


Q ss_pred             Eee-c-CeEEEEEc
Q 015290          344 SRD-Y-MNLKLWDI  355 (409)
Q Consensus       344 sg~-~-~~v~iwd~  355 (409)
                      +|. . ..+--|-.
T Consensus       442 agiGkEhRlGRW~~  455 (479)
T KOG0299|consen  442 AGIGKEHRLGRWWC  455 (479)
T ss_pred             EecccccccceeeE
Confidence            773 2 44444544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.3e-24  Score=200.92  Aligned_cols=268  Identities=13%  Similarity=0.125  Sum_probs=190.9

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ...|.+.|+|+.|+|||++||+|+.|+.|.||+..........+..         .-....-.|+.+..+.+|.      
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~---------g~~~~vE~wk~~~~l~~H~------  129 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGST---------GGAKNVESWKVVSILRGHD------  129 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccc---------ccccccceeeEEEEEecCC------
Confidence            3449999999999999999999999999999998741100000000         0000112678899999999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|..+.|  +|++.+|++++.|++|.||+..+.+.......+             .+.+....+.|.+.++++
T Consensus       130 ------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-------------~s~VKGvs~DP~Gky~AS  188 (942)
T KOG0973|consen  130 ------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH-------------QSLVKGVSWDPIGKYFAS  188 (942)
T ss_pred             ------Cccceecc--CCCccEEEEecccceEEEEccccceeeeeeecc-------------cccccceEECCccCeeee
Confidence                  89999999  899999999999999999999998766665433             234455566777888887


Q ss_pred             ccccccceeEEEecCCcccceeeeeecc--ccccceeEEEeCCCCCeEEEe---c--CCeEEEEEccCCCceeeeeecCC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPH--AHDFNINSISNNSDCETFVSA---D--DLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~---~--d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      -+.  |+++++|++..-...+.+...+.  .....+..+.|+|||++|++.   .  ...+.|.+-. +-..-.      
T Consensus       189 qsd--Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-tWk~~~------  259 (942)
T KOG0973|consen  189 QSD--DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-TWKVDK------  259 (942)
T ss_pred             ecC--CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC-Cceeee------
Confidence            776  99999999765222222211111  123457789999999999985   2  2356666654 222111      


Q ss_pred             CcCcCccCceEEEEEeCC--------C----CC----EEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccc
Q 015290          261 SNMDDLTEVITSAEFHPI--------Y----CN----LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~--------~----~~----~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (409)
                       .+.+|.+++.+++|+|.        |    +.    .+|+|+.|++|.||.....++......++              
T Consensus       260 -~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf--------------  324 (942)
T KOG0973|consen  260 -DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF--------------  324 (942)
T ss_pred             -eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh--------------
Confidence             27899999999999872        1    11    78899999999999986654321111122              


Q ss_pred             ccccceeeeEeccCCCEEEEee-cCeEEEEEccC
Q 015290          325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       325 ~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~  357 (409)
                        ...|..++|+|||-.|++++ ||+|.+..+..
T Consensus       325 --~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  325 --NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             --cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence              34899999999998888887 69999999863

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-23  Score=161.09  Aligned_cols=254  Identities=10%  Similarity=0.116  Sum_probs=178.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|.|.+|+|+|++||+|++|.+|++..+.....                             ...||..+|.     
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-----------------------------~~~g~dle~n-----  133 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-----------------------------NATGHDLEFN-----  133 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccc-----------------------------cccCcceeee-----
Confidence            899999999999999999999999999988775443                             2334432211     


Q ss_pred             eeccceEEEEEEec--CCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          111 EIEEKINRVRWCAA--PNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       111 ~~~~~v~~l~~~~s--~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      .|++.|..++|.-.  ..+..|+++ ..|..|++=|...++.......+             .+.++. ..+=++.++++
T Consensus       134 mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh-------------tghila-lyswn~~m~~s  199 (350)
T KOG0641|consen  134 MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH-------------TGHILA-LYSWNGAMFAS  199 (350)
T ss_pred             ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC-------------cccEEE-EEEecCcEEEc
Confidence            12389999999742  334566665 45677777777666543322111             122222 22223456666


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccc---cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHA---HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      |+.  |.+|++||+.-......+..-+.+   ....|.++++.|.|++|++| .|....+||++ .+.+++.       +
T Consensus       200 gsq--dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~-------f  269 (350)
T KOG0641|consen  200 GSQ--DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQR-------F  269 (350)
T ss_pred             cCC--CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeee-------e
Confidence            665  889999999764332222221111   23578999999999999999 99999999999 7777776       6


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ..|...|.++.|+|.. .++++++.|..|++-|+...-...-++.+             ...|...+..+.|+|..--++
T Consensus       270 ~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~v-------------v~ehkdk~i~~rwh~~d~sfi  335 (350)
T KOG0641|consen  270 HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMV-------------VAEHKDKAIQCRWHPQDFSFI  335 (350)
T ss_pred             CCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEE-------------EEeccCceEEEEecCccceee
Confidence            8899999999999988 99999999999999998764211111111             234577888999999875555


Q ss_pred             Eee-cCeEEEEEcc
Q 015290          344 SRD-YMNLKLWDIR  356 (409)
Q Consensus       344 sg~-~~~v~iwd~~  356 (409)
                      +.+ |.++.+|-+.
T Consensus       336 sssadkt~tlwa~~  349 (350)
T KOG0641|consen  336 SSSADKTATLWALN  349 (350)
T ss_pred             eccCcceEEEeccC
Confidence            554 6999999763

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=2e-25  Score=185.06  Aligned_cols=239  Identities=17%  Similarity=0.239  Sum_probs=178.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+.|+++.|.+++++++.++.|+.+++|++...+                           ...+|.||+         
T Consensus       218 s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r---------------------------~~~TLsGHt---------  261 (459)
T KOG0288|consen  218 SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR---------------------------LRHTLSGHT---------  261 (459)
T ss_pred             cCCCcceeeecCCCceEEeecCCCceeeeeccchh---------------------------hhhhhcccc---------
Confidence            45789999999999999999999999999998766                           457889999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|+++.|  ......+++++.|.+|++||+....+.+..-....            ...+.+.    ...+.++-+
T Consensus       262 ---dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~------------cnDI~~~----~~~~~SgH~  320 (459)
T KOG0288|consen  262 ---DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ------------CNDIVCS----ISDVISGHF  320 (459)
T ss_pred             ---cceeeehh--hccccceeeccccchhhhhhhhhhheecccccccc------------ccceEec----ceeeeeccc
Confidence               89999999  35554599999999999999988766544221100            0000010    122333444


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        |+.||+||+..   ..+....  .-.+.|+++..++++..++++ .|.++.+.|++ +......+....  +. -...
T Consensus       321 --DkkvRfwD~Rs---~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR-t~eI~~~~sA~g--~k-~asD  389 (459)
T KOG0288|consen  321 --DKKVRFWDIRS---ADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR-TKEIRQTFSAEG--FK-CASD  389 (459)
T ss_pred             --ccceEEEeccC---CceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecc-cccEEEEeeccc--cc-cccc
Confidence              77899999876   3344433  233589999999999999998 99999999999 555555543221  11 1223


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      .+.+.|||++ .|+++||.||.|+||++.++++.    +.+.. +..          ...|++++|+|.|.+|++++. +
T Consensus       390 wtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE----~~l~~-s~s----------~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  390 WTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLE----KVLSL-STS----------NAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             cceeEECCCC-ceeeeccCCCcEEEEEccCceEE----EEecc-CCC----------CcceEEEEEcCCCchhhcccCCc
Confidence            7899999999 99999999999999999998852    33333 100          237999999999999999985 9


Q ss_pred             eEEEE
Q 015290          349 NLKLW  353 (409)
Q Consensus       349 ~v~iw  353 (409)
                      .+.+|
T Consensus       454 ~v~lW  458 (459)
T KOG0288|consen  454 AVTLW  458 (459)
T ss_pred             ceEec
Confidence            99998

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=1.1e-24  Score=183.00  Aligned_cols=228  Identities=16%  Similarity=0.248  Sum_probs=173.5

Q ss_pred             CccccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           26 DEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      ....+|.+.=+.++|++ ..-+|++|+.|+.|++||+......                    .+...+...+.+|+   
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------------------~~~~~p~~~~~~h~---  227 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------------------DKVVDPKTIFSGHE---  227 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------------------CccccceEEeecCC---
Confidence            35667888778899999 4457899999999999999865430                    11233567789999   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               ..|..++|+| .+...|++++.|+.+.|||++++....                                 
T Consensus       228 ---------~~VeDV~~h~-~h~~lF~sv~dd~~L~iwD~R~~~~~~---------------------------------  264 (422)
T KOG0264|consen  228 ---------DVVEDVAWHP-LHEDLFGSVGDDGKLMIWDTRSNTSKP---------------------------------  264 (422)
T ss_pred             ---------cceehhhccc-cchhhheeecCCCeEEEEEcCCCCCCC---------------------------------
Confidence                     8999999986 566689999999999999999631110                                 


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                                               ... ..+|.+.|+|++|+|-+ ..||+| .|++|.|||+|.-..++..       
T Consensus       265 -------------------------~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~-------  311 (422)
T KOG0264|consen  265 -------------------------SHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT-------  311 (422)
T ss_pred             -------------------------ccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee-------
Confidence                                     111 16899999999999965 556678 8999999999955565555       


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCC-cccccccccceeeeEeccCCCE
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      +.+|...|..+.|+|.....||+++.|+.+.+||+..-...    +..+....+|.. .-.-.||...|..+.|+|...+
T Consensus       312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e----q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE----QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc----cChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence            89999999999999998889999999999999999763211    111111222222 2223589999999999999877


Q ss_pred             EE-Eeec-CeEEEEEcc
Q 015290          342 LL-SRDY-MNLKLWDIR  356 (409)
Q Consensus       342 l~-sg~~-~~v~iwd~~  356 (409)
                      ++ +.++ +.+.||+..
T Consensus       388 ~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEecCCceEEEeecc
Confidence            65 4554 999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=1.6e-24  Score=197.31  Aligned_cols=257  Identities=20%  Similarity=0.328  Sum_probs=198.9

Q ss_pred             ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (409)
                      .|+..+.+-.  .....+|.+.|++++|..-+.+|++|+.|.++++||..+++                           
T Consensus       232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~---------------------------  282 (537)
T KOG0274|consen  232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE---------------------------  282 (537)
T ss_pred             EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc---------------------------
Confidence            5666554433  22356699999999998878899999999999999998887                           


Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                      +...+.+|.            ..|.++..    ...++++|+.|.+|++|++.++....+... +...|.++...     
T Consensus       283 C~~~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~-----  340 (537)
T KOG0274|consen  283 CTHSLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD-----  340 (537)
T ss_pred             EEEEecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec-----
Confidence            688899999            89999987    455888899999999999999988877664 23323332221     


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC-
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-  250 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~-  250 (409)
                               ..++.+++.  |++|++|++.   .++|++.+ .+|...|.++.+.+. ..+++| .|++|++||++ .. 
T Consensus       341 ---------~~~lvsgs~--d~~v~VW~~~---~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~-~~~  403 (537)
T KOG0274|consen  341 ---------EPLLVSGSY--DGTVKVWDPR---TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR-TKR  403 (537)
T ss_pred             ---------CCEEEEEec--CceEEEEEhh---hceeeeee-cCCcceEEEEEecCc-ceEEeeeeccceEeecCC-chh
Confidence                     344455554  8899999998   48899988 889999999988765 789999 99999999999 55 


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      +++.+       +.+|.+.+..+.+.  + +.|++++.|++|++||...++.    .+.+..+            |...|
T Consensus       404 ~c~~t-------l~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~------------~~~~v  457 (537)
T KOG0274|consen  404 KCIHT-------LQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGEC----LRTLEGR------------HVGGV  457 (537)
T ss_pred             hhhhh-------hcCCcccccccccc--c-ceeEeccccccEEEeecccCce----eeeeccC------------CcccE
Confidence            67766       78898888766654  4 7899999999999999988764    2444330            24577


Q ss_pred             eeeEeccCCCEEEEeecCeEEEEEccCCCcceEEE
Q 015290          331 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~  365 (409)
                      ..+++. +...|+++.++.+++||+++ +++...+
T Consensus       458 ~~l~~~-~~~il~s~~~~~~~l~dl~~-~~~~~~l  490 (537)
T KOG0274|consen  458 SALALG-KEEILCSSDDGSVKLWDLRS-GTLIRTL  490 (537)
T ss_pred             EEeecC-cceEEEEecCCeeEEEeccc-Cchhhhh
Confidence            777776 33444455569999999996 7776655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=170.18  Aligned_cols=279  Identities=13%  Similarity=0.176  Sum_probs=185.6

Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      -.|+.|++.|.+||+|..||.|.|||+.+..                           ..+.+.+|.            .
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------------------------iar~lsaH~------------~   66 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---------------------------IARMLSAHV------------R   66 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc---------------------------hhhhhhccc------------c
Confidence            7899999999999999999999999999765                           345688999            8


Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc-cCceeccCCCCCceeeccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE-KNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +|.+++|  |++|+.|+++|.|..|++||+..+.+.....+.  .++....+.+.. ..++.+..              +
T Consensus        67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~n~~va~~~--------------~  128 (405)
T KOG1273|consen   67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKRNKCVATIM--------------E  128 (405)
T ss_pred             ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc--CccceeeeccccCCeEEEEEe--------------c
Confidence            9999999  899999999999999999999998866554432  222222222211 11111111              0


Q ss_pred             ceeEEEecCCcccceeeeeeccc-cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          194 MATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      ....+-++.. ....++..-..+ ......+..|.+.|+++++| ..|.+.++|.. +.+++..+.+.      ....|.
T Consensus       129 ~sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas~rit------s~~~IK  200 (405)
T KOG1273|consen  129 ESPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVASFRIT------SVQAIK  200 (405)
T ss_pred             CCcEEEEecC-CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeeeeeec------hheeee
Confidence            0111111111 000000000000 11112234588999999999 99999999999 66666653221      135788


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc--cccceeeeEeccCCCEEEEeec--
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE--IIASISDIKFANDGQHLLSRDY--  347 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~sg~~--  347 (409)
                      .+.++..| ..|+.-+.|..||.|+++.--.+..        ...+.+...+.+  ....-.+++||.+|.|+++|+.  
T Consensus       201 ~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r--------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a  271 (405)
T KOG1273|consen  201 QIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGR--------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA  271 (405)
T ss_pred             EEEEeccC-cEEEEecCCceEEEEehhhhcccCc--------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence            99999999 9999999999999999874110000        000000000110  0234567899999999998874  


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      ..++||.... |.+++.+.|..+.--              ..+.|+|-...+++-
T Consensus       272 HaLYIWE~~~-GsLVKILhG~kgE~l--------------~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  272 HALYIWEKSI-GSLVKILHGTKGEEL--------------LDVNWHPVRPIIASI  311 (405)
T ss_pred             eeEEEEecCC-cceeeeecCCchhhe--------------eecccccceeeeeec
Confidence            8999999886 999999988775421              478899988877776

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=194.45  Aligned_cols=217  Identities=18%  Similarity=0.238  Sum_probs=165.4

Q ss_pred             hccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec
Q 015290           19 AFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ   98 (409)
Q Consensus        19 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (409)
                      .|.+...-...+|.+.|.++.||.+ .+|++++.|.+|+||++...+.                           +..| 
T Consensus       356 ~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C---------------------------L~~F-  406 (712)
T KOG0283|consen  356 VFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC---------------------------LKVF-  406 (712)
T ss_pred             cccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce---------------------------eeEE-
Confidence            4455555556679999999999976 4899999999999999986652                           3333 


Q ss_pred             CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC
Q 015290           99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (409)
Q Consensus        99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (409)
                      .|.            +-|+||+|+| .|.++|++|+.|+.||||++...+...                           
T Consensus       407 ~Hn------------dfVTcVaFnP-vDDryFiSGSLD~KvRiWsI~d~~Vv~---------------------------  446 (712)
T KOG0283|consen  407 SHN------------DFVTCVAFNP-VDDRYFISGSLDGKVRLWSISDKKVVD---------------------------  446 (712)
T ss_pred             ecC------------CeeEEEEecc-cCCCcEeecccccceEEeecCcCeeEe---------------------------
Confidence            344            8999999987 788899999999999999998664432                           


Q ss_pred             CCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeee
Q 015290          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD  257 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~  257 (409)
                                          |               ..-...|++++|.|+|+..++| .+|.+++|+.. ..+......
T Consensus       447 --------------------W---------------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~-~lk~~~~~~  490 (712)
T KOG0283|consen  447 --------------------W---------------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE-GLKLVSDFH  490 (712)
T ss_pred             --------------------e---------------hhhhhhheeEEeccCCceEEEEEeccEEEEEEcc-CCeEEEeee
Confidence                                2               2334779999999999999999 99999999998 555444433


Q ss_pred             cCC--CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          258 MKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       258 ~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                      +..  ..-..|. .|+.+.|.|..+..++..+.|..|+|||.+..++    +..+.++..           ...-....|
T Consensus       491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----v~KfKG~~n-----------~~SQ~~Asf  554 (712)
T KOG0283|consen  491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----VHKFKGFRN-----------TSSQISASF  554 (712)
T ss_pred             EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh----hhhhccccc-----------CCcceeeeE
Confidence            322  1122233 7999999998766677889999999999977654    244443110           123456789


Q ss_pred             ccCCCEEEEeec-CeEEEEEcc
Q 015290          336 ANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       336 s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      +.||++|+++++ ..|++|+..
T Consensus       555 s~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ccCCCEEEEeecCceEEEEeCC
Confidence            999999999986 999999974

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4e-23  Score=187.70  Aligned_cols=278  Identities=14%  Similarity=0.176  Sum_probs=196.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|....+.|+|.|+|++|.+++.||.|++|+.......                          -..+.-+.        
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--------------------------P~ti~~~g--------   56 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--------------------------PETIDISG--------   56 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC--------------------------CchhhccC--------
Confidence            48888999999999999999999999999998765210                          01111133        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++-    ++.+|++++.+++|.+|.+.+++...+..             .-.-....+..+.++.+++.|+
T Consensus        57 ----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL~-------------Rftlp~r~~~v~g~g~~iaags  115 (933)
T KOG1274|consen   57 ----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTILA-------------RFTLPIRDLAVSGSGKMIAAGS  115 (933)
T ss_pred             ----ceeEEEee----cccceEEeeccceEEEeeCCCCCccceee-------------eeeccceEEEEecCCcEEEeec
Confidence                67888776    55699999999999999998775442211             0111223344456667777766


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc-c
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-T  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-~  267 (409)
                      .  |-.|++-++....   ..+.+ .+|.++|.++.|+|++++||+. .||.|++||++ .+.+..++..-......- .
T Consensus       116 d--D~~vK~~~~~D~s---~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s  188 (933)
T KOG1274|consen  116 D--DTAVKLLNLDDSS---QEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILS  188 (933)
T ss_pred             C--ceeEEEEeccccc---hheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCCcccccccc
Confidence            5  7789999887633   33333 7999999999999999999999 99999999999 666655533221111112 4


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      ..+..++|+|++ -.|+..+.|+.|++|+..+.+..    ..+..           ..+...+..++|+|.|+|||+++ 
T Consensus       189 ~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~-----------~~~ss~~~~~~wsPnG~YiAAs~~  252 (933)
T KOG1274|consen  189 RICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRD-----------KLSSSKFSDLQWSPNGKYIAASTL  252 (933)
T ss_pred             ceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecc-----------cccccceEEEEEcCCCcEEeeecc
Confidence            567889999998 67777888999999999887642    22222           11234589999999999999998 


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +|.|.|||.++       ...|....             .|.+++|.|++..|-.-..-
T Consensus       253 ~g~I~vWnv~t-------~~~~~~~~-------------~Vc~~aw~p~~n~it~~~~~  291 (933)
T KOG1274|consen  253 DGQILVWNVDT-------HERHEFKR-------------AVCCEAWKPNANAITLITAL  291 (933)
T ss_pred             CCcEEEEeccc-------chhccccc-------------eeEEEecCCCCCeeEEEeec
Confidence            59999999974       11122211             12689999988765443333

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=2.3e-24  Score=183.14  Aligned_cols=244  Identities=15%  Similarity=0.218  Sum_probs=189.1

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ...+.|..-|.++..+...+++.||+. |.|+|||+......                        .++..+..      
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdc------  461 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDC------  461 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------Cccccccc------
Confidence            445669999999999999999999985 67999999754321                        01222222      


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                          +.-++-|+++..  .+||+.|++|+.-.++.|||+.........++                              
T Consensus       462 ----l~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikael------------------------------  505 (705)
T KOG0639|consen  462 ----LNRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL------------------------------  505 (705)
T ss_pred             ----cCcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhc------------------------------
Confidence                222267888888  69999999999999999999986543322110                              


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                   ....-...+++.+||.+..+++ .||.|.|||+. ....++.       +.
T Consensus       506 -----------------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------fq  548 (705)
T KOG0639|consen  506 -----------------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQ  548 (705)
T ss_pred             -----------------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------cc
Confidence                                         1112234678999999999998 99999999999 6666665       89


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|.+.+.||.++++| ..|-+|+-|++||.||++.++.       +..|.           ....|.++..+|.+.+|+.
T Consensus       549 GhtDGascIdis~dG-tklWTGGlDntvRcWDlregrq-------lqqhd-----------F~SQIfSLg~cP~~dWlav  609 (705)
T KOG0639|consen  549 GHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQ-------LQQHD-----------FSSQIFSLGYCPTGDWLAV  609 (705)
T ss_pred             CCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhh-------hhhhh-----------hhhhheecccCCCccceee
Confidence            999999999999999 9999999999999999999753       22211           1458999999999999999


Q ss_pred             eec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      |-. +.+.|-...  +.....+..|+.-+               .++.|.+-|+++++.+.|+.++
T Consensus       610 GMens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLn  658 (705)
T KOG0639|consen  610 GMENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLN  658 (705)
T ss_pred             ecccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhh
Confidence            976 888888875  45555666666643               6999999999999999998653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.9e-23  Score=164.23  Aligned_cols=234  Identities=18%  Similarity=0.226  Sum_probs=178.2

Q ss_pred             CCcEEEEEECCCCCEEEEEec--CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +-.|..+.|......++.++.  |.+|+..++.+.+                           +++.|.||.        
T Consensus        56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk---------------------------ylRYF~GH~--------  100 (311)
T KOG1446|consen   56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK---------------------------YLRYFPGHK--------  100 (311)
T ss_pred             cccccEEEEecCCceEEEccCCCCCceEEEEeecCc---------------------------eEEEcCCCC--------
Confidence            346677777765556666664  7899999998876                           789999999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|++|+.  +|-+..+++++.|++|++||++..+++-...                                   
T Consensus       101 ----~~V~sL~~--sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----------------------------------  139 (311)
T KOG1446|consen  101 ----KRVNSLSV--SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----------------------------------  139 (311)
T ss_pred             ----ceEEEEEe--cCCCCeEEecccCCeEEeeEecCCCCceEEe-----------------------------------
Confidence                89999999  6888999999999999999999765543321                                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC-CceeeeeecCCCcCcCcc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~  267 (409)
                                                  ...-...+|.|+|-++|++ ..+.|++||++.. +.+..++.+.    .+-.
T Consensus       140 ----------------------------~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~----~~~~  187 (311)
T KOG1446|consen  140 ----------------------------LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT----DNDE  187 (311)
T ss_pred             ----------------------------cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC----CCCc
Confidence                                        1112357899999999999 6669999999954 3455554322    1334


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ...+.+.|+|+| ++++.+...+.+++.|.-.|..    ...+..+...          ..--...+|+||++++++|++
T Consensus       188 ~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~----~~tfs~~~~~----------~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  188 AEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTV----KSTFSGYPNA----------GNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             cceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcE----eeeEeeccCC----------CCcceeEEECCCCcEEEEecC
Confidence            568999999999 9888889999999999988864    2344432111          111256889999999999986


Q ss_pred             -CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          348 -MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                       |+|.+|++++ +..+..+.+. ...+               .++.|+|.-.++++++.
T Consensus       253 dg~i~vw~~~t-g~~v~~~~~~~~~~~---------------~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  253 DGTIHVWNLET-GKKVAVLRGPNGGPV---------------SCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CCcEEEEEcCC-CcEeeEecCCCCCCc---------------cccccCCceeeeeecCc
Confidence             9999999987 8888888874 4443               58899999888888764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.9e-24  Score=168.96  Aligned_cols=215  Identities=18%  Similarity=0.264  Sum_probs=165.6

Q ss_pred             eeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                      +.+++|.            +.|.+|+|  +.+|..|++++.|+++++|++...+......                    
T Consensus        14 r~~~~~~------------~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------------   59 (313)
T KOG1407|consen   14 RELQGHV------------QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------------   59 (313)
T ss_pred             HHhhhhh------------hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc--------------------
Confidence            4567777            89999999  7999999999999999999998763322111                    


Q ss_pred             eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCce
Q 015290          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC  252 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~  252 (409)
                                                             ..+|.+.|-.++|+|. ...++++ .|.+|++||++ .+++
T Consensus        60 ---------------------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~~k~   99 (313)
T KOG1407|consen   60 ---------------------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-SGKC   99 (313)
T ss_pred             ---------------------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEec-cCcE
Confidence                                                   1688889999999875 5677888 99999999999 6666


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccc-----------------
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-----------------  315 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------------  315 (409)
                      ...+..       . +.=.-+.|+|+| .+++.++.|..|.+.|.++.+........+..+..                 
T Consensus       100 ~~~i~~-------~-~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen  100 TARIET-------K-GENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EEEeec-------c-CcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            655321       1 222468899999 99999999999999999885432111111111000                 


Q ss_pred             -------ccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290          316 -------SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (409)
Q Consensus       316 -------~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (409)
                             .-.+...++.|.....++.|+|+|+|+|+|+ |-.+-+||+.. --++..+..+.-++               
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpV---------------  234 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPV---------------  234 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCce---------------
Confidence                   1123445778999999999999999999997 59999999974 67888888888776               


Q ss_pred             eeEEEcCCCCeEEEcccCCCC
Q 015290          388 FECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       388 ~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.+.||.||++||+||+|..|
T Consensus       235 RTlSFS~dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  235 RTLSFSHDGRMLASASEDHFI  255 (313)
T ss_pred             EEEEeccCcceeeccCccceE
Confidence            799999999999999999765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=7.9e-24  Score=173.77  Aligned_cols=227  Identities=16%  Similarity=0.229  Sum_probs=164.4

Q ss_pred             cccCCCcEEEEEECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           28 ELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      .+.|.+.++.+.-++-  ..+.|+=+..|.|+||++.....         .+..++  ........+++.++.+|.    
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------~l~~~~--~~~~~s~~~Pl~t~~ghk----  211 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------ALSEPG--LEVKDSEFRPLFTFNGHK----  211 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------hhcCcc--ccccccccCceEEecccC----
Confidence            3447777777777764  45667777899999999864321         111111  111124667888899998    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              +.=+.|+|.|...| .|++|..-+.|++|...++....-..                               
T Consensus       212 --------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~-------------------------------  251 (440)
T KOG0302|consen  212 --------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQR-------------------------------  251 (440)
T ss_pred             --------ccceeeeccccccc-ccccCccccceEeeeeccCceeecCc-------------------------------
Confidence                    78899999543344 68888888899999998876543210                               


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                                                 .+.+|...|-.|+|+|.. ..|+++ .||+|+|||++...+.-.+.      .
T Consensus       252 ---------------------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~  298 (440)
T KOG0302|consen  252 ---------------------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------T  298 (440)
T ss_pred             ---------------------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------e
Confidence                                       136799999999999975 566778 99999999999332222221      4


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC--CE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QH  341 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~  341 (409)
                      +.|.+.|+.+.|+.+- .+||+|+.||+++|||+|.-+..              .+...|+-|..+|+++.|+|..  .+
T Consensus       299 kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             eccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEeccccCceE
Confidence            7799999999999998 69999999999999999985421              2244466678999999999964  34


Q ss_pred             EEEeecCeEEEEEccC
Q 015290          342 LLSRDYMNLKLWDIRM  357 (409)
Q Consensus       342 l~sg~~~~v~iwd~~~  357 (409)
                      .++|.|.+|.|||+..
T Consensus       364 aasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSV  379 (440)
T ss_pred             EeccCCCcEEEEEeec
Confidence            4455679999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=181.54  Aligned_cols=312  Identities=16%  Similarity=0.193  Sum_probs=211.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +.+.|+++.=+|--..+|.|..+|+|.|+++..++.                           +.+|+...         
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------------l~sFk~d~---------  244 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------------LMSFKQDW---------  244 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEEEEcccCcE---------------------------EEEEEccc---------
Confidence            578999999999889999999999999999998873                           55666555         


Q ss_pred             eeccceEEEEEEecCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC-------
Q 015290          111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-------  182 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  182 (409)
                         ++|++++|  ..||..+ ++++..|.+.+||++..+......-.+...+....+.......+......+.       
T Consensus       245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~  319 (910)
T KOG1539|consen  245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS  319 (910)
T ss_pred             ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence               89999999  6788765 5667779999999998887766553333444444444433333333222111       


Q ss_pred             -------------------ceeecccccc-------ccee----------------------------------------
Q 015290          183 -------------------AHGYHLEWTE-------NMAT----------------------------------------  196 (409)
Q Consensus       183 -------------------~~~~~~~~~~-------~~~i----------------------------------------  196 (409)
                                         .+-+.+..+.       |++.                                        
T Consensus       320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~  399 (910)
T KOG1539|consen  320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV  399 (910)
T ss_pred             CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence                               1111111110       0111                                        


Q ss_pred             -------------------------EEEecCCcccceeee--eeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          197 -------------------------KIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       197 -------------------------~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                                               +.|+......++-.-  .-++.....+++++.++-|++.+.| ..|.|-+|+++ 
T Consensus       400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ-  478 (910)
T KOG1539|consen  400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ-  478 (910)
T ss_pred             eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc-
Confidence                                     111111111111000  0001123567888889999999999 99999999998 


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc-----ccccccccc---------
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----SARILRDAA---------  314 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~---------  314 (409)
                      ++-....+.    .-+.|.+.|+.++.+..+ +.+++++.+|.+++||..+..+...     .+.....|.         
T Consensus       479 SGi~r~sf~----~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  479 SGIHRKSFG----DSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             cCeeecccc----cCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence            665544421    125799999999999988 9999999999999999987642110     000000000         


Q ss_pred             ----------cccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCC
Q 015290          315 ----------ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS  383 (409)
Q Consensus       315 ----------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (409)
                                ........|.+|...|++++|||||++|++++ |++|++||+-+ +.++..+......            
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt-~~lID~~~vd~~~------------  620 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT-GTLIDGLLVDSPC------------  620 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC-cceeeeEecCCcc------------
Confidence                      01112235788999999999999999999998 59999999987 8888777655543            


Q ss_pred             ccceeeEEEcCCCCeEEEcccCC
Q 015290          384 IFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       384 ~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                          +++.|||+|.+|||...|+
T Consensus       621 ----~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  621 ----TSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             ----eeeEECCCCCEEEEEEecC
Confidence                4899999999999998874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=177.23  Aligned_cols=237  Identities=18%  Similarity=0.269  Sum_probs=180.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      -.++|.|++-+|+|.+|+.|+..|.|.+|.+.++..                           +..+.+|-         
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------------------------L~v~~aHY---------  123 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------------------------LNVLSAHY---------  123 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------------------HHHHHhhc---------
Confidence            367899999999999999888999999999999884                           56678888         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|+++.|  +-||.+|++|+.||.|.+|.+..--...                                       
T Consensus       124 ---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a~---------------------------------------  159 (476)
T KOG0646|consen  124 ---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSAD---------------------------------------  159 (476)
T ss_pred             ---cceeEEEE--eCCCcEEEecCCCccEEEEEEEeecccc---------------------------------------
Confidence               89999999  7999999999999999999874321000                                       


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                  ......++..| ..|.-+|+.+...+.  ..+++++ .|.++++||+. .+..+..+.        ..
T Consensus       160 ------------~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti~--------fp  217 (476)
T KOG0646|consen  160 ------------NDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTIT--------FP  217 (476)
T ss_pred             ------------cCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEEe--------cC
Confidence                        00012444444 789999999988765  3578888 99999999999 676665532        34


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc--ceeeeEeccCCCEEEEe
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR  345 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~sg  345 (409)
                      ..+.+++.+|-+ +.++.|+.+|.|.+.++.........+..-.. .........+.+|.+  .|+|++.+-||.+|++|
T Consensus       218 ~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG  295 (476)
T KOG0646|consen  218 SSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSG  295 (476)
T ss_pred             CcceeEEEcccc-cEEEecCCcceEEeeehhcCCccccccccccc-ccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence            678999999998 99999999999999887654311100111111 122233455778887  99999999999999999


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcc
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~  372 (409)
                      +. |.|+|||+.+ .++++++....+++
T Consensus       296 d~dg~VcvWdi~S-~Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  296 DEDGKVCVWDIYS-KQCIRTLQTSKGPV  322 (476)
T ss_pred             CCCCCEEEEecch-HHHHHHHhhhcccc
Confidence            85 9999999986 78887776444544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.1e-25  Score=196.19  Aligned_cols=232  Identities=17%  Similarity=0.295  Sum_probs=192.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.++..-..++.+++|+.|-.+-+|.+....                           .+..|.+|+        
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he--------   70 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE--------   70 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC--------
Confidence            388899999987788999999999999999986543                           345689999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          .+|.+|.|  +++..+|++|+.+|+|++||+...+....                                     
T Consensus        71 ----spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt-------------------------------------  107 (825)
T KOG0267|consen   71 ----SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT-------------------------------------  107 (825)
T ss_pred             ----Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------
Confidence                99999999  67888999999999999999987654332                                     


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                              +.+|...+..+.|+|-+.+.++| .|..+++||++ ...+...       +.+|..
T Consensus       108 ------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~~  155 (825)
T KOG0267|consen  108 ------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHTR  155 (825)
T ss_pred             ------------------------hhccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCcc
Confidence                                    27899999999999999999999 99999999999 5556665       677999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .+..+.|+|+| .+++.|+.|.+++|||...++.    .+.|             ..|...+..+.|+|..-++++|+ |
T Consensus       156 vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~----~~ef-------------~~~e~~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  156 VVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKL----SKEF-------------KSHEGKVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             eeEEEeecCCC-ceeeccCCcceeeeeccccccc----cccc-------------ccccccccccccCchhhhhccCCCC
Confidence            99999999999 9999999999999999998875    2334             44578899999999988888887 5


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ++|++||+++ -+.+...+....               +|.+.+|+|+++.+++|-..
T Consensus       218 ~tv~f~dlet-fe~I~s~~~~~~---------------~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  218 RTVRFWDLET-FEVISSGKPETD---------------GVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ceeeeeccce-eEEeeccCCccC---------------CceeeeecCCceeeecCchh
Confidence            9999999985 444444433322               33699999999998887654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3.6e-23  Score=182.41  Aligned_cols=268  Identities=15%  Similarity=0.188  Sum_probs=200.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|+..|..+++.+. ..+++++.||++++|+-..++.                         -....+.+|.        
T Consensus        12 gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~-------------------------l~~~~~~~~~--------   57 (745)
T KOG0301|consen   12 GHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQY-------------------------LETHAFEGPK--------   57 (745)
T ss_pred             cCccchheeEecCC-eEEeecCCCCceeeeeccCccc-------------------------ccceecccCc--------
Confidence            49999999998765 4789999999999999866543                         1234466676        


Q ss_pred             ceeccceEE-EEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          110 LEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~-l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                          +-|.. +++.+ .++..+++|+.|.+|.+|...+.....+...+ ...+|+++...             ...+.++
T Consensus        58 ----g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH-~snVC~ls~~~-------------~~~~iSg  118 (745)
T KOG0301|consen   58 ----GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH-KSNVCSLSIGE-------------DGTLISG  118 (745)
T ss_pred             ----ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhhhcc-ccceeeeecCC-------------cCceEec
Confidence                66766 88854 56667999999999999999887766555433 22344443221             2224444


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      +.  |.++++|...     ++.... .+|+..|.+++.-|++ .+++| .|.+|++|.-   +..+++       +.+|.
T Consensus       119 SW--D~TakvW~~~-----~l~~~l-~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~t-------f~gHt  179 (745)
T KOG0301|consen  119 SW--DSTAKVWRIG-----ELVYSL-QGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKT-------FSGHT  179 (745)
T ss_pred             cc--ccceEEecch-----hhhccc-CCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhh-------hccch
Confidence            44  8899999874     444444 8999999999999988 78888 9999999985   455555       78999


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      +.|+.+++-+++  .|++++.||.|++|++....       +++.           .+|..-+.+++..+++..+++++ 
T Consensus       180 D~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~-------l~~~-----------~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  180 DCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEV-------LLEM-----------HGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             hheeeeEEecCC--CeEeecCCceEEEEeccCce-------eeee-----------eccceEEEEEEecCCCCeEEEecC
Confidence            999999999984  68999999999999995532       2222           35678899999777777777776 


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |++++||+..   .+.+.+.-....+               +++.+-++|. |++|+.||.|
T Consensus       240 DrtlriW~~~---e~~q~I~lPttsi---------------Wsa~~L~NgD-Ivvg~SDG~V  282 (745)
T KOG0301|consen  240 DRTLRIWKKD---ECVQVITLPTTSI---------------WSAKVLLNGD-IVVGGSDGRV  282 (745)
T ss_pred             CceEEEeecC---ceEEEEecCccce---------------EEEEEeeCCC-EEEeccCceE
Confidence            5999999964   7777777555443               7888888886 6678888865

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=7.8e-23  Score=170.87  Aligned_cols=247  Identities=15%  Similarity=0.189  Sum_probs=192.9

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .-+|...|+.+.|+|+...+++++.|..|+||.+.....                           ......|+      
T Consensus       257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------------------------~~~~~~h~------  303 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------------------------PTSSRPHE------  303 (506)
T ss_pred             ccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------------------------cccccccc------
Confidence            345999999999999999999999999999999876653                           34567787      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ++|+.+.-  .|.|.||++++.|++..+.|++++.........           ..+-.+.+..+++++.++..
T Consensus       304 ------~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-----------~s~v~~ts~~fHpDgLifgt  364 (506)
T KOG0289|consen  304 ------EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-----------TSDVEYTSAAFHPDGLIFGT  364 (506)
T ss_pred             ------ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----------cccceeEEeeEcCCceEEec
Confidence                  89999999  589999999999999999999998766543211           12234556778888888888


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      |..  |+.+++||+....   .+..| .+|.++|..++|+.+|-+|+++ +|+.|++||++ ..+.++++.     +. .
T Consensus       365 gt~--d~~vkiwdlks~~---~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR-Kl~n~kt~~-----l~-~  431 (506)
T KOG0289|consen  365 GTP--DGVVKIWDLKSQT---NVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR-KLKNFKTIQ-----LD-E  431 (506)
T ss_pred             cCC--CceEEEEEcCCcc---ccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh-hhcccceee-----cc-c
Confidence            876  9999999998633   33444 7899999999999999999999 99999999999 444555532     22 2


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...+.++.|++.| .+|+.++.|=.|++++-.+.        .|..       ...+..|.+..+.+.|....+++++++
T Consensus       432 ~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k--------~W~~-------~~~~~~~sg~st~v~Fg~~aq~l~s~s  495 (506)
T KOG0289|consen  432 KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTK--------SWTE-------IKELADHSGLSTGVRFGEHAQYLASTS  495 (506)
T ss_pred             cccceeEEEcCCC-CeEEeecceeEEEEEecccc--------ccee-------eehhhhcccccceeeecccceEEeecc
Confidence            2368999999999 99999987766666664432        2222       222345567889999999999999998


Q ss_pred             c-CeEEEEEc
Q 015290          347 Y-MNLKLWDI  355 (409)
Q Consensus       347 ~-~~v~iwd~  355 (409)
                      . ..++++.+
T Consensus       496 md~~l~~~a~  505 (506)
T KOG0289|consen  496 MDAILRLYAL  505 (506)
T ss_pred             chhheEEeec
Confidence            4 77777754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=6.7e-23  Score=164.31  Aligned_cols=224  Identities=19%  Similarity=0.289  Sum_probs=166.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee----eeeeccC---CCcccccccccccccCceeccCCCCCceee
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMD---HFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                      +++.+-+|  ++||.++++|+.|..|+|.|+...-.    .......   ..+.+.  .+...-..+-...++|-..+++
T Consensus       113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeecchhheEE
Confidence            89999999  89999999999999999999863211    1110000   001000  0111122233445667777888


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      +++.  |++++++|.......+-.+.+  ....+|.++.|+|.|++|+.| +-.++++||+. +-+++-.-    ..-.+
T Consensus       189 S~sr--D~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsa----nPd~q  259 (430)
T KOG0640|consen  189 SGSR--DNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSA----NPDDQ  259 (430)
T ss_pred             eccC--CCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeec----Ccccc
Confidence            8776  999999999875555544544  344579999999999999999 88999999999 56655332    12467


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCCCEEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLS  344 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~s  344 (409)
                      |.+.|+++.+++.+ ++.+++|.||.|++||--+++ |   +..+..            .| ...|.+..|..+|+|+++
T Consensus       260 ht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r-C---v~t~~~------------AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  260 HTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR-C---VRTIGN------------AHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             cccceeEEEecCCc-cEEEEeccCCcEEeeccccHH-H---HHHHHh------------hcCCceeeeEEEccCCeEEee
Confidence            99999999999999 999999999999999977765 3   233332            12 358999999999999998


Q ss_pred             ee-cCeEEEEEccCCCcceEEEecc
Q 015290          345 RD-YMNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       345 g~-~~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      .+ |..|++|.+.+ ++++..+.|.
T Consensus       323 SG~DS~vkLWEi~t-~R~l~~YtGA  346 (430)
T KOG0640|consen  323 SGKDSTVKLWEIST-GRMLKEYTGA  346 (430)
T ss_pred             cCCcceeeeeeecC-CceEEEEecC
Confidence            76 69999999997 8999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.6e-23  Score=161.12  Aligned_cols=220  Identities=17%  Similarity=0.267  Sum_probs=166.6

Q ss_pred             CccccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           26 DEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      .++.+|.++|+.++|-.  -|.+||+++.||.|.||.-++++-                         .-......|+  
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-------------------------~k~~e~~~h~--  102 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-------------------------TKAYEHAAHS--  102 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-------------------------hhhhhhhhhc--
Confidence            45567999999999965  899999999999999999887742                         2344567787  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                                ..|++|+|.|+.-|-.|++++.||.|.|.++++...-..                               
T Consensus       103 ----------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-------------------------------  141 (299)
T KOG1332|consen  103 ----------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-------------------------------  141 (299)
T ss_pred             ----------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-------------------------------
Confidence                      899999998877888899999999999999876411000                               


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---C-----------CeEEEe-cCCeEEEEEccC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---C-----------ETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~-----------~~l~~~-~d~~i~lwd~~~  248 (409)
                                                 ......|.-.|+++.|.|.   |           +.|++| .|..|+||+...
T Consensus       142 ---------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~  194 (299)
T KOG1332|consen  142 ---------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS  194 (299)
T ss_pred             ---------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence                                       0012678888999999875   4           569999 999999999983


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCC---CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      ..-.+.      ..+.+|.+.|+.++|.|.-   ..++|++|.||++.||-.+.... .-..+.+             ..
T Consensus       195 ~~w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~wk~tll-------------~~  254 (299)
T KOG1332|consen  195 DSWKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-PWKKTLL-------------EE  254 (299)
T ss_pred             cchhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-ccccccc-------------cc
Confidence            211111      2278999999999999974   25899999999999998763211 1011111             12


Q ss_pred             cccceeeeEeccCCCEEEEee-cCeEEEEEccCCCc
Q 015290          326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  360 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~  360 (409)
                      ....+..+.||..|++|+.++ |+.|.+|.-..+|+
T Consensus       255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk  290 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK  290 (299)
T ss_pred             CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence            245799999999999999775 69999998765444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1.9e-22  Score=177.83  Aligned_cols=331  Identities=15%  Similarity=0.135  Sum_probs=218.5

Q ss_pred             cccCCCcEEEEEECCCCC---EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeee----------
Q 015290           28 ELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK----------   94 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~---~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   94 (409)
                      .-+|.+-|.+++|...+.   +||++|.|..||||.+.-....   ...+++....   .....|.+...          
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~---~~~~~e~~~t---~~~~~~~f~~l~~i~~~is~e  260 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE---DSNEREDSLT---TLSNLPVFMILEEIQYRISFE  260 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc---cccccccccc---cccCCceeeeeeeEEEEEehh
Confidence            445999999999987544   8899999999999998643311   0000000000   00001111111          


Q ss_pred             eeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                      ..+.||+            +.|.++.|  +|.+..|++++.|+++.+|...+..-..........      ..-..+.+.
T Consensus       261 all~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe------~gg~a~GF~  320 (764)
T KOG1063|consen  261 ALLMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE------VGGSAGGFW  320 (764)
T ss_pred             hhhcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeec------cccccccee
Confidence            2345888            99999999  688889999999999999988765322221111100      001123455


Q ss_pred             eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  253 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~  253 (409)
                      .+.++++..++..-+.  .|..++|..+........... .+|-+.|..++|+|.|++|++. .|.+-+++-.-......
T Consensus       321 g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w  397 (764)
T KOG1063|consen  321 GGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW  397 (764)
T ss_pred             eEEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence            6666666655444433  778999984443333344433 8999999999999999999998 99999987654122222


Q ss_pred             eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc------c---ccc----------------ccc
Q 015290          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA------L---CDH----------------SAR  308 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~------~---~~~----------------~~~  308 (409)
                      ..+    .+-.-|...++|++|-+.. ..|++|..+..+|+|+....-      .   +..                ..+
T Consensus       398 HEi----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK  472 (764)
T KOG1063|consen  398 HEI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK  472 (764)
T ss_pred             eee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence            222    1134577788999999864 789999999999999865410      0   000                000


Q ss_pred             -ccc------cc----cccc-----------C------------CcccccccccceeeeEeccCCCEEEEeec------C
Q 015290          309 -ILR------DA----AESH-----------G------------SKSFFTEIIASISDIKFANDGQHLLSRDY------M  348 (409)
Q Consensus       309 -~~~------~~----~~~~-----------~------------~~~~~~~~~~~i~~~~~s~~g~~l~sg~~------~  348 (409)
                       .+.      .+    .+.+           +            ...-+.||...|.+++.+|+|+++|+++.      -
T Consensus       473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA  552 (764)
T KOG1063|consen  473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA  552 (764)
T ss_pred             CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence             000      00    0000           0            01124689999999999999999998742      5


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|++|+..+ -...+.+.+|.-.+               +.++|||||++|++.|.|+++
T Consensus       553 vI~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  553 VIRLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTV  596 (764)
T ss_pred             EEEEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceE
Confidence            799999875 67777899998876               799999999999999999875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=170.41  Aligned_cols=251  Identities=19%  Similarity=0.256  Sum_probs=182.8

Q ss_pred             CCCcEEEEEECCCC--CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        31 h~~~v~~v~~~~~~--~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +...|++++|+|..  +++|+|+.-|.|-+||+.+.+.                       .+.-+..+..|.       
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs-------  234 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS-------  234 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence            68899999999954  5889999999999999964442                       334566788898       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ++|.+|.|.| .+...+++.|.||+|++-|+++.....+...                                 
T Consensus       235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~---------------------------------  275 (498)
T KOG4328|consen  235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL---------------------------------  275 (498)
T ss_pred             -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc---------------------------------
Confidence                 8999999965 4556899999999999999987654332210                                 


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                                ......+..+.|+.+...++.+ .=|...+||++..+.....       +.-|.
T Consensus       276 --------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~  322 (498)
T KOG4328|consen  276 --------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHK  322 (498)
T ss_pred             --------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhh
Confidence                                      1233445678888888788887 6679999999966654544       45677


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      ..|.+++++|..+.+||++|.|++.+|||+|.-.....  ..+           ....|...|.+..|||+|-.|++.+ 
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~l-----------st~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFL-----------STLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cce-----------ecccccceeeeeEEcCCCCceEeecc
Confidence            89999999999989999999999999999987432110  011           1235688999999999876566654 


Q ss_pred             cCeEEEEEcc---CCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          347 YMNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       347 ~~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      |+.|+|||..   ....++..+. |...-.         +-...+.++|.||..++++|-.-.
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r  442 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPR  442 (498)
T ss_pred             CCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCc
Confidence            6999999983   1133444443 222110         111225899999999998886543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=3.7e-23  Score=183.03  Aligned_cols=249  Identities=15%  Similarity=0.180  Sum_probs=195.6

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      .....-...|.+++.+|+|++||+|..-|.++||+++..+                           ....+.+|+    
T Consensus       453 ~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------------------~~~~~eAHe----  501 (1080)
T KOG1408|consen  453 VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------------------YTCFMEAHE----  501 (1080)
T ss_pred             hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------------------hhhheeccc----
Confidence            3344456789999999999999999999999999998765                           345678898    


Q ss_pred             ccccceeccceEEEEEEecC--CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          106 YLKSLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                              ..|.|+.|.. |  ..++|++++.|+.|.++|+...-                                   
T Consensus       502 --------sEilcLeyS~-p~~~~kLLASasrdRlIHV~Dv~rny-----------------------------------  537 (1080)
T KOG1408|consen  502 --------SEILCLEYSF-PVLTNKLLASASRDRLIHVYDVKRNY-----------------------------------  537 (1080)
T ss_pred             --------ceeEEEeecC-chhhhHhhhhccCCceEEEEeccccc-----------------------------------
Confidence                    8999999952 3  34689999999999999986542                                   


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--CeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                              ..++++ .+|...|+++.|.-.|  ..++++ .|..|.+--.+..+ ....+. + 
T Consensus       538 ------------------------~l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~-r-  589 (1080)
T KOG1408|consen  538 ------------------------DLVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFP-R-  589 (1080)
T ss_pred             ------------------------chhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhcccc-Cceecc-c-
Confidence                                    112222 7899999999998776  667777 88877644333111 111110 0 


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      ..-.-....++.++..|.. +++++++.|..|+|||+.+++.    .+.|.+          -.+|.+....+...|.|.
T Consensus       590 ~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq----~k~FKg----------s~~~eG~lIKv~lDPSgi  654 (1080)
T KOG1408|consen  590 HTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQ----VKSFKG----------SRDHEGDLIKVILDPSGI  654 (1080)
T ss_pred             cccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccce----eeeecc----------cccCCCceEEEEECCCcc
Confidence            0011123568999999998 9999999999999999999986    366666          245677889999999999


Q ss_pred             EEEEe-ecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          341 HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       341 ~l~sg-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |||+. +|+++.++|+.+ ++++....||...+               +.+.|.+|-+.|++.+.||.|
T Consensus       655 Y~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCI  707 (1080)
T KOG1408|consen  655 YLATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCI  707 (1080)
T ss_pred             EEEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceE
Confidence            99987 579999999986 99999999999987               799999999999999999976

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.6e-22  Score=158.92  Aligned_cols=248  Identities=14%  Similarity=0.203  Sum_probs=172.4

Q ss_pred             ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (409)
                      .|++.+. +...+-....|.++|.+++|+.||..+++|+.|+.+++||+.+++                           
T Consensus        54 ~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---------------------------  105 (347)
T KOG0647|consen   54 IWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---------------------------  105 (347)
T ss_pred             EEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---------------------------
Confidence            4666553 222223344489999999999999999999999999999999987                           


Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                       +..+..|.            ++|.++.|.+...-..|+|||.|++|+.||.+.........+  +..+.++        
T Consensus       106 -~~~v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~--------  162 (347)
T KOG0647|consen  106 -VSQVAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAA--------  162 (347)
T ss_pred             -eeeeeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--cceeeeh--------
Confidence             35678888            999999998645556899999999999999987665444332  1111111        


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                          ..-.+-...+.    .+..|.++++++.........  ....-.++|++..++.+..+.| -+|.+.+..+....+
T Consensus       163 ----Dv~~pm~vVat----a~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  163 ----DVLYPMAVVAT----AERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             ----hccCceeEEEe----cCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence                11001111111    266899999976543322221  2344567899999988888888 999999999883222


Q ss_pred             eeeeeecCCCcCcCcc---------CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccc
Q 015290          252 CFNIVDMKPSNMDDLT---------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (409)
                       ..-+.     ++.|.         ..|++++|+|.. ..|++++.||++.+||-.....    ++..+           
T Consensus       233 -~~nFt-----FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k----Lk~s~-----------  290 (347)
T KOG0647|consen  233 -KDNFT-----FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK----LKTSE-----------  290 (347)
T ss_pred             -cCcee-----EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh----hhccC-----------
Confidence             22221     23333         358889999988 9999999999999999765321    12222           


Q ss_pred             ccccccceeeeEeccCCCEEEEe
Q 015290          323 FTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       323 ~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                        .|..+|++.+|+.+|.++|.+
T Consensus       291 --~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  291 --THPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             --cCCCccceeEecCCCCEEEEE
Confidence              235799999999999999865

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.4e-21  Score=167.60  Aligned_cols=283  Identities=15%  Similarity=0.144  Sum_probs=204.3

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...|.+|+|+.+.+.||.+-.||.|.||++...=                          -+...+.+++.         
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w--------------------------~~~~vi~g~~d---------   69 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW--------------------------FLEPVIHGPED---------   69 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCc--------------------------eeeEEEecCCC---------
Confidence            5789999999999999999999999999987632                          24456777763         


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..|.+++|  . ++..|.+.+.+|.|.-||+.+.+.+....             ...+.+-+...++....++.+.. 
T Consensus        70 --rsIE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d-------------~~gg~IWsiai~p~~~~l~Igcd-  130 (691)
T KOG2048|consen   70 --RSIESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKYNID-------------SNGGAIWSIAINPENTILAIGCD-  130 (691)
T ss_pred             --CceeeEEE--c-cCCeEEeecCCceEEEEecccCceeEEec-------------CCCcceeEEEeCCccceEEeecC-
Confidence              78999999  3 66799999999999999999887765543             22233444444555555555532 


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC-ccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~  269 (409)
                       +|.+...+.....  -.....+....+.|.+++|+|++..+++| .||.|++||.. .+..+..+.++...+.. ...-
T Consensus       131 -dGvl~~~s~~p~~--I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  131 -DGVLYDFSIGPDK--ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             -CceEEEEecCCce--EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceE
Confidence             6655555554311  11122235667899999999999999999 99999999999 66666655555444443 4456


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      |+++.|-.+  ..|++|...|+|.+||...+.+    ++.+             ..|.+.|.+++..+++.++.+++ |+
T Consensus       207 VWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTL----iqS~-------------~~h~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  207 VWSVLFLRD--STIASGDSAGTVTFWDSIFGTL----IQSH-------------SCHDADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             EEEEEEeec--CcEEEecCCceEEEEcccCcch----hhhh-------------hhhhcceeEEEEcCCCCeEEEccCCC
Confidence            889998876  4899999999999999988765    2333             33467899999999988888776 68


Q ss_pred             eEEEEEccCCCcc---eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|..|.....+..   ......|..-+               .+++..++  .|++|+.|.++
T Consensus       268 ~ii~~~~~~~~~~wv~~~~r~~h~hdv---------------rs~av~~~--~l~sgG~d~~l  313 (691)
T KOG2048|consen  268 KIIQYSLTTNKSEWVINSRRDLHAHDV---------------RSMAVIEN--ALISGGRDFTL  313 (691)
T ss_pred             ceEEEEecCCccceeeeccccCCcccc---------------eeeeeecc--eEEecceeeEE
Confidence            8888887653331   11222333332               58888877  88899988764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=9.5e-22  Score=154.51  Aligned_cols=199  Identities=17%  Similarity=0.264  Sum_probs=161.8

Q ss_pred             eecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCcee
Q 015290           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (409)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (409)
                      .++||+            .+++.|.|  +.+|.+|.+|+.|.++.+|--.+|+..-                        
T Consensus         5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlG------------------------   46 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLG------------------------   46 (327)
T ss_pred             ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceee------------------------
Confidence            368898            89999999  7999999999999999999887765432                        


Q ss_pred             ccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceee
Q 015290          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~  254 (409)
                                                          ++ .+|.+.|.|+..+.+.+.+++| .|.+++|||+. +++.+.
T Consensus        47 ------------------------------------ty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la   88 (327)
T KOG0643|consen   47 ------------------------------------TY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLA   88 (327)
T ss_pred             ------------------------------------ee-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEE
Confidence                                                23 7999999999999999999999 99999999999 787777


Q ss_pred             eeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-----CCCeEEEEeCCCcccc---ccccccccccccccCCccccccc
Q 015290          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-----~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      .+.        -...|..+.|+++| ++++...     ..+.|.++|++.....   ..+...             +..+
T Consensus        89 ~~k--------~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k-------------I~t~  146 (327)
T KOG0643|consen   89 TWK--------TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK-------------IPTP  146 (327)
T ss_pred             Eee--------cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE-------------ecCC
Confidence            642        34689999999999 7777654     3467999999854310   000111             1223


Q ss_pred             ccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ...++.+-|+|-+++|++|.+ |.|.+||++++.+.+.....|...+               .++.++||..+++++|.|
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccC
Confidence            578999999999999999975 9999999997556777778888876               599999999999999999


Q ss_pred             CC
Q 015290          406 RD  407 (409)
Q Consensus       406 g~  407 (409)
                      .+
T Consensus       212 tt  213 (327)
T KOG0643|consen  212 TT  213 (327)
T ss_pred             cc
Confidence            75

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=7.6e-23  Score=179.13  Aligned_cols=235  Identities=16%  Similarity=0.190  Sum_probs=182.7

Q ss_pred             cccceeeehhccC---CCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc
Q 015290           10 ASLEWKCSQAFGE---RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (409)
Q Consensus        10 ~~~~w~~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (409)
                      .-..|+..|...+   +.....-.|.+-|+.+....+++.|+++|.|-+|++|+...+..                    
T Consensus        48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--------------------  107 (735)
T KOG0308|consen   48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--------------------  107 (735)
T ss_pred             eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--------------------
Confidence            3346887776553   22345556999999999999999999999999999999876531                    


Q ss_pred             CCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccc
Q 015290           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (409)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (409)
                           -+..++..|.            +.|.|+++. .++..++++|+.|+.|.+||++.+.......++.         
T Consensus       108 -----~c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------  160 (735)
T KOG0308|consen  108 -----FCMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNN---------  160 (735)
T ss_pred             -----hhHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccc---------
Confidence                 1456678888            899999984 4788899999999999999999874321111110         


Q ss_pred             cccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEE
Q 015290          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (409)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd  245 (409)
                                                               ........++...|.+++.++.|..+++| ..+.+++||
T Consensus       161 -----------------------------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  161 -----------------------------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             -----------------------------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence                                                     00000113788899999999999899999 999999999


Q ss_pred             ccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      .++..+.++        +.+|...|..+..++|| ..++++|.||+|++||+...+ |   +..+..             
T Consensus       200 prt~~kimk--------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr-C---l~T~~v-------------  253 (735)
T KOG0308|consen  200 PRTCKKIMK--------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR-C---LATYIV-------------  253 (735)
T ss_pred             cccccceee--------eeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc-e---eeeEEe-------------
Confidence            994333333        67999999999999999 999999999999999998754 3   233333             


Q ss_pred             cccceeeeEeccCCCEEEEee-cCeEEEEEccCC
Q 015290          326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  358 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~  358 (409)
                      |...++++..+|+-..+.+|+ |+.|..=|++..
T Consensus       254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            456799999999999999997 599999999863

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=3.5e-22  Score=173.43  Aligned_cols=281  Identities=16%  Similarity=0.224  Sum_probs=196.3

Q ss_pred             hhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee
Q 015290           18 QAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (409)
Q Consensus        18 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (409)
                      +.|.........+|++.|.++...|.|.+||+|+.||+|+||.+.++.+                           +..+
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---------------------------vr~~  438 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---------------------------VRTV  438 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---------------------------EEEE
Confidence            3344444444556999999999999999999999999999999998873                           3333


Q ss_pred             cCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc
Q 015290           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (409)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (409)
                      .             .++.|.||+|+|.++-..|+++-.+. +-|-+..-|.......  .             .      
T Consensus       439 ~-------------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~--t-------------~------  483 (733)
T KOG0650|consen  439 Q-------------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGP--T-------------K------  483 (733)
T ss_pred             e-------------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcc--h-------------h------
Confidence            2             22689999997766666666665555 5555544331110000  0             0      


Q ss_pred             CCCCCceeecc--cccccceeEEEecCCcccce-eeeeeccccccceeEEEeCCCCCeEEEe-c---CCeEEEEEccCCC
Q 015290          178 NPPSFAHGYHL--EWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISD  250 (409)
Q Consensus       178 ~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~lwd~~~~~  250 (409)
                           ..++.+  -...+..+..|.-......+ -+... -.|...|..|.||..|.+|++. .   ...|.|+++. ..
T Consensus       484 -----ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~  556 (733)
T KOG0650|consen  484 -----ELLASAPNESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KR  556 (733)
T ss_pred             -----hhhhcCCCccCCcccceeechhhhhhhccceEEE-EecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cc
Confidence                 000000  00124456667654322222 11222 4688999999999999999985 3   4578899988 33


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      .....       +....+.|.++.|+|.. .+|+.++. ..|+|||+....+.   .+.+..              ...|
T Consensus       557 ~sQ~P-------F~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelv---KkL~tg--------------~kwi  610 (733)
T KOG0650|consen  557 KSQSP-------FRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELV---KKLLTG--------------SKWI  610 (733)
T ss_pred             cccCc-------hhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHH---HHHhcC--------------Ceee
Confidence            33322       45566789999999998 66665554 46999999875542   122333              4589


Q ss_pred             eeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..++.+|.|.-|+.|+ |+.+..+|++...++.+++..|...+               ++++|++.-.++++|+.||++
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv  674 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTV  674 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcE
Confidence            9999999999888887 59999999998778999999999887               799999999999999999986

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.9e-21  Score=156.55  Aligned_cols=280  Identities=15%  Similarity=0.204  Sum_probs=203.2

Q ss_pred             CCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccC----CcCC-CCccchhhhhhhccccccc-------CCCc
Q 015290           23 RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG----GKNT-PNQHISRSELEKQMDFTST-------SHPE   90 (409)
Q Consensus        23 ~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~----~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~   90 (409)
                      .....-.+|.+.|++++|++.+.++++++.|++..||...-    .+.. +..+....++++...-...       ..+.
T Consensus       181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence            34455667999999999999999999999999999998321    1110 1112334444444321111       1122


Q ss_pred             -eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           91 -YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        91 -~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                       --++..|.+|.            +.|.+..|.  ..|+.+++++.|++..+||+++++.......+.            
T Consensus       261 iRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd------------  314 (481)
T KOG0300|consen  261 IRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNILTGHD------------  314 (481)
T ss_pred             eeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceeccccCcc------------
Confidence             23677899999            899999994  789999999999999999999998876654332            


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                       ..+..+..++........+.  |.+.++||...  ..+.+..| .+|...|+++.|..+. .+++| +|.+|++||++.
T Consensus       315 -~ELtHcstHptQrLVvTsSr--DtTFRLWDFRe--aI~sV~VF-QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  315 -SELTHCSTHPTQRLVVTSSR--DTTFRLWDFRE--AIQSVAVF-QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             -hhccccccCCcceEEEEecc--CceeEeccchh--hcceeeee-cccccceeEEEEecCC-ceeecCCCceEEEeeecc
Confidence             22344555555555555554  88999999973  33455555 9999999999998765 57888 999999999997


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .+.++.++.        ..++++.++.+..+ .+++.--.+..|++||+....+.     .+        +++.-.+|..
T Consensus       388 MRsplATIR--------tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rla-----Rl--------PrtsRqgHrR  445 (481)
T KOG0300|consen  388 MRSPLATIR--------TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLA-----RL--------PRTSRQGHRR  445 (481)
T ss_pred             ccCcceeee--------cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccc-----cC--------Ccccccccce
Confidence            777777642        34678889999877 88888888899999999876541     11        2233467889


Q ss_pred             ceeeeEeccCC---CEEEEeecCeEEEEEccC
Q 015290          329 SISDIKFANDG---QHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       329 ~i~~~~~s~~g---~~l~sg~~~~v~iwd~~~  357 (409)
                      .|.+++|..+-   +++.+|-|..+.=|++..
T Consensus       446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             eeeeeeccccCcccccccccccceeeeeEecc
Confidence            99999998653   344455579999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=3.3e-22  Score=169.92  Aligned_cols=222  Identities=14%  Similarity=0.173  Sum_probs=177.2

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .-.|++......|+++|+..+.|+|||+....                           +.+.+++|+            
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---------------------------~hr~lkdh~------------  121 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKL---------------------------IHRFLKDHQ------------  121 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHH---------------------------HhhhccCCc------------
Confidence            33455555555899999999999999998544                           356689999            


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|+++.+  +-...+|++++..|-|.|..+.++.....+.                                       
T Consensus       122 stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~---------------------------------------  160 (673)
T KOG4378|consen  122 STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT---------------------------------------  160 (673)
T ss_pred             ceeEEEEe--cCCcceeEEeccCCcEEEEecccCcccccee---------------------------------------
Confidence            89999999  5778899999999999999988764432211                                       


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                           .+....|.-+.++|..+.+++ + ++|.|.+||+. ...++..+      ...|..+..
T Consensus       161 ---------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~~------~~~HsAP~~  212 (673)
T KOG4378|consen  161 ---------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFHA------SEAHSAPCR  212 (673)
T ss_pred             ---------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccch------hhhccCCcC
Confidence                                 122345668899998877765 5 89999999998 44444332      578999999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeE
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v  350 (409)
                      .++|+|..+.+|++.+.|..|.+||.+..+..    ..+..              ..+...++|+++|.+|+.|+. |.|
T Consensus       213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             cceecCCccceEEEecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCceE
Confidence            99999999889999999999999999976532    22222              358999999999999999976 999


Q ss_pred             EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC
Q 015290          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  396 (409)
                      ..||++....++.++..|...+               ++++|.|..
T Consensus       275 i~YD~R~~k~Pv~v~sah~~sV---------------t~vafq~s~  305 (673)
T KOG4378|consen  275 IAYDMRSTKAPVAVRSAHDASV---------------TRVAFQPSP  305 (673)
T ss_pred             EEEecccCCCCceEeeecccce---------------eEEEeeecc
Confidence            9999998778999999999876               689998765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=3.4e-22  Score=170.12  Aligned_cols=249  Identities=19%  Similarity=0.300  Sum_probs=190.5

Q ss_pred             ceeeehhccCCCCCcccc---CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290           13 EWKCSQAFGERNPDEELQ---DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (409)
                      .|.+.|. +.+.++..+.   ..+.|.++.+.|||+.|++|+.-.++.|||+......                      
T Consensus       444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr----------------------  500 (705)
T KOG0639|consen  444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR----------------------  500 (705)
T ss_pred             EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc----------------------
Confidence            4666665 3333333332   4678999999999999999999999999999865431                      


Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                         ...++..-.            ....+++.  +||.+..++|..||.|.|||+.+..+++.                 
T Consensus       501 ---ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vrq-----------------  546 (705)
T KOG0639|consen  501 ---IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ-----------------  546 (705)
T ss_pred             ---hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeeec-----------------
Confidence               112233222            45677888  89999999999999999999998755443                 


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                                                                  +.+|.+.+.|+.++++|..|-+| -|++|+-||++.
T Consensus       547 --------------------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  547 --------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             --------------------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence                                                        27999999999999999999999 999999999994


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ..+ +..        ....+.|.++..+|.+ .+++.|-.++.+.+-.......     ..+             .-|..
T Consensus       583 grq-lqq--------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yql-------------hlheS  634 (705)
T KOG0639|consen  583 GRQ-LQQ--------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQL-------------HLHES  634 (705)
T ss_pred             hhh-hhh--------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eee-------------ccccc
Confidence            333 222        2235789999999999 9999999999888777655321     122             23467


Q ss_pred             ceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      .|.++.|.+.|+++++.+ |+-+-.|..-. |..+...+.....                +++.+|.|.++|+|||.|..
T Consensus       635 cVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~SsV----------------lsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  635 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSSV----------------LSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             EEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccCcc----------------eeeeeccCceEEEecCCCcc
Confidence            899999999999999765 69999999764 6555555443332                69999999999999999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=8.5e-21  Score=161.73  Aligned_cols=268  Identities=14%  Similarity=0.217  Sum_probs=184.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      ..+..|.||+|.++|+ +++|..+|.|.||+..+.+                           ..+....|.        
T Consensus       244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------------------------~~k~~~aH~--------  287 (626)
T KOG2106|consen  244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------------------------ISKQVHAHD--------  287 (626)
T ss_pred             ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------------------------EEeEeeecC--------
Confidence            3457899999999997 6799999999999986654                           233334888        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|.++..  -.+| .|++|+.|+.|..||-.-.+.   .+...+.         ..+.+.........  ++.|.
T Consensus       288 ----ggv~~L~~--lr~G-tllSGgKDRki~~Wd~~y~k~---r~~elPe---------~~G~iRtv~e~~~d--i~vGT  346 (626)
T KOG2106|consen  288 ----GGVFSLCM--LRDG-TLLSGGKDRKIILWDDNYRKL---RETELPE---------QFGPIRTVAEGKGD--ILVGT  346 (626)
T ss_pred             ----CceEEEEE--ecCc-cEeecCccceEEecccccccc---ccccCch---------hcCCeeEEecCCCc--EEEee
Confidence                99999999  4677 566699999999999222221   1111111         11222222222222  11111


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  .+.|-.-.++..   ..+.  ..+|......++.+|+.++++++ .|+.+++|+ . .+.....         .-..
T Consensus       347 t--rN~iL~Gt~~~~---f~~~--v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d  408 (626)
T KOG2106|consen  347 T--RNFILQGTLENG---FTLT--VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIED  408 (626)
T ss_pred             c--cceEEEeeecCC---ceEE--EEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecC
Confidence            1  112222222211   1111  26888899999999999999998 999999999 3 2322221         1346


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      ++.++.|+|.|  .+|.|...|...+.|..+..+       ...|.+           ..+++.++|+|+|.+||.|+ |
T Consensus       409 ~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l-------v~~~~d-----------~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  409 PAECADFHPSG--VVAVGTATGRWFVLDTETQDL-------VTIHTD-----------NEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             ceeEeeccCcc--eEEEeeccceEEEEeccccee-------EEEEec-----------CCceEEEEEcCCCCEEEEecCC
Confidence            78899999997  899999999999999988432       222211           35899999999999999998 4


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      +.|+||-++.++..+.....+...              .|+.+.||+|+++|.+-|-|-
T Consensus       469 ~~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~  513 (626)
T KOG2106|consen  469 NHIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDY  513 (626)
T ss_pred             CeEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCce
Confidence            999999998777777766655442              127999999999999887663

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=5e-20  Score=161.36  Aligned_cols=257  Identities=10%  Similarity=0.070  Sum_probs=166.4

Q ss_pred             CCcEEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ...+.+++|+|+++.+ ++++.++.|++||..+++.                           ...+..+.         
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~---------   73 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------------------IGTLPSGP---------   73 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEeccCCC---------
Confidence            3456789999999876 5677889999999987652                           23344333         


Q ss_pred             eeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          .+..+.|  +|+++.++++ +.|+.+++||+.+.+.........              ....+.+++++.+++.+.
T Consensus        74 ----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~dg~~l~~~~  133 (300)
T TIGR03866        74 ----DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV--------------EPEGMAVSPDGKIVVNTS  133 (300)
T ss_pred             ----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC--------------CcceEEECCCCCEEEEEe
Confidence                3567888  6888877654 568999999998876544332110              112233344555554443


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      . ....+.+|+.++.   ......  .....+.+++|+|++++++. + .++.|.+||++ .++.+..+...........
T Consensus       134 ~-~~~~~~~~d~~~~---~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       134 E-TTNMAHFIDTKTY---EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGVHPEA  206 (300)
T ss_pred             c-CCCeEEEEeCCCC---eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeeccccccccc
Confidence            2 1235667787652   222222  12234578999999998864 4 69999999998 5655554322211011111


Q ss_pred             CceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-
Q 015290          268 EVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  345 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-  345 (409)
                      .....++|+|++ +++ ++.+.++.+.+||+++++..    .....              ...+.+++|+|+|++|+++ 
T Consensus       207 ~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~~~~  267 (300)
T TIGR03866       207 VQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLLV--------------GQRVWQLAFTPDEKYLLTTN  267 (300)
T ss_pred             CCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEEe--------------CCCcceEEECCCCCEEEEEc
Confidence            234578899999 664 44455678999999876531    11111              2368899999999999876 


Q ss_pred             e-cCeEEEEEccCCCcceEEEecccCc
Q 015290          346 D-YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      . ++.|++||++. ++++..++....+
T Consensus       268 ~~~~~i~v~d~~~-~~~~~~~~~~~~~  293 (300)
T TIGR03866       268 GVSNDVSVIDVAA-LKVIKSIKVGRLP  293 (300)
T ss_pred             CCCCeEEEEECCC-CcEEEEEEccccc
Confidence            3 49999999986 8888888765444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=1.6e-21  Score=172.21  Aligned_cols=232  Identities=14%  Similarity=0.218  Sum_probs=175.4

Q ss_pred             CCCcEEE-EEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           31 DVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        31 h~~~v~~-v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      |.+-|.. ++|-+ ++..|++|++|..|.+|...+..                           ++.+|++|+       
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~-------  101 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------------------PLYTLKGHK-------  101 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCC---------------------------chhhhhccc-------
Confidence            6677766 88876 55579999999999999998766                           578899999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++.  ..++. +++||.|.++++|.+..-...  ...+             +..+-....-+.. .+.+|
T Consensus       102 -----snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~--l~gH-------------~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen  102 -----SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS--LQGH-------------TASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             -----cceeeeec--CCcCc-eEecccccceEEecchhhhcc--cCCc-------------chheeeeeecCCC-cEEec
Confidence                 89999997  46665 999999999999987533221  1111             1111122222223 33333


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      +.  |.+|++|.-     ++++++| .+|.+.|+.+++-+++.++-++.||.|++|++.  +.++..       +.+|..
T Consensus       158 sa--DKtIklWk~-----~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~-------~~ghtn  220 (745)
T KOG0301|consen  158 SA--DKTIKLWKG-----GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLE-------MHGHTN  220 (745)
T ss_pred             cC--cceeeeccC-----Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEecc--Cceeee-------eeccce
Confidence            33  889999987     4677777 899999999999988755444499999999996  666655       789999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~  348 (409)
                      .|++++...++ ..+++++.|++++||+...   |.+.+..-                ...|+++.+-++|..++.|+||
T Consensus       221 ~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e---~~q~I~lP----------------ttsiWsa~~L~NgDIvvg~SDG  280 (745)
T KOG0301|consen  221 FVYSISMALSD-GLIVSTGEDRTLRIWKKDE---CVQVITLP----------------TTSIWSAKVLLNGDIVVGGSDG  280 (745)
T ss_pred             EEEEEEecCCC-CeEEEecCCceEEEeecCc---eEEEEecC----------------ccceEEEEEeeCCCEEEeccCc
Confidence            99999977777 8999999999999999763   33222221                2479999999999998888999


Q ss_pred             eEEEEEccC
Q 015290          349 NLKLWDIRM  357 (409)
Q Consensus       349 ~v~iwd~~~  357 (409)
                      .||||..+.
T Consensus       281 ~VrVfT~~k  289 (745)
T KOG0301|consen  281 RVRVFTVDK  289 (745)
T ss_pred             eEEEEEecc
Confidence            999998763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.2e-23  Score=184.56  Aligned_cols=191  Identities=22%  Similarity=0.396  Sum_probs=163.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|..+|-++.|+++..+|+.|+.+|+|++||++..+                           .+++|.||.       
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk---------------------------~vrtLtgh~-------  112 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK---------------------------IVRTLTGHL-------  112 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhhhh---------------------------hhhhhhccc-------
Confidence            5599999999999999999999999999999999776                           367889999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..+.++.|  +|-+.++++++.|..+++||++...+...                                    
T Consensus       113 -----~~~~sv~f--~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~------------------------------------  149 (825)
T KOG0267|consen  113 -----LNITSVDF--HPYGEFFASGSTDTDLKIWDIRKKGCSHT------------------------------------  149 (825)
T ss_pred             -----cCcceeee--ccceEEeccccccccceehhhhccCceee------------------------------------
Confidence                 89999999  68999999999999999999985543322                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                              + .+|...+.++.|+|+|++++.| .|..+++||+. .++....       +..|.
T Consensus       150 ------------------------~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~-agk~~~e-------f~~~e  196 (825)
T KOG0267|consen  150 ------------------------Y-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT-AGKLSKE-------FKSHE  196 (825)
T ss_pred             ------------------------e-cCCcceeEEEeecCCCceeeccCCcceeeeeccc-ccccccc-------ccccc
Confidence                                    2 5688889999999999999999 99999999998 6777665       78899


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      +.+.++.|+|.. -++++|+.|+++++||+++-+...    ....             ....|.+++|+|++..+++|..
T Consensus       197 ~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~----s~~~-------------~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  197 GKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVIS----SGKP-------------ETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             ccccccccCchh-hhhccCCCCceeeeeccceeEEee----ccCC-------------ccCCceeeeecCCceeeecCch
Confidence            999999999998 899999999999999998754321    1111             1357999999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.5e-21  Score=170.22  Aligned_cols=224  Identities=20%  Similarity=0.290  Sum_probs=174.1

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      +-...-+.|+ ....||+|. ...|.+|+..++...                           ....-++          
T Consensus       177 DfY~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~----------  217 (484)
T KOG0305|consen  177 DFYLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE----------  217 (484)
T ss_pred             cHhhhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC----------
Confidence            3345567888 455788876 457999999887631                           1122224          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        +.|+++.|  +++|.+|++|..+|.|.|||..+.+.....                                      
T Consensus       218 --~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~--------------------------------------  255 (484)
T KOG0305|consen  218 --ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTL--------------------------------------  255 (484)
T ss_pred             --CceEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccc--------------------------------------
Confidence              79999999  799999999999999999999876543321                                      


Q ss_pred             ccceeEEEecCCcccceeeeeeccc-cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                             .+ |...|-+++|+  +..+.+| .++.|..+|++.......+       +.+|...
T Consensus       256 -----------------------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qe  303 (484)
T KOG0305|consen  256 -----------------------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQE  303 (484)
T ss_pred             -----------------------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccce
Confidence                                   34 88999999998  6678889 9999999999954444442       6889999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC-CCEEEEee--
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD--  346 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~sg~--  346 (409)
                      |..+.|++++ .+||+|+.|+.+.|||.....+    ..             .+..|.+.|.+++|+|- ..+||+|+  
T Consensus       304 VCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----~~-------------~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  304 VCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----KF-------------TFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             eeeeEECCCC-CeeccCCCccceEeccCCCccc----cE-------------EEeccceeeeEeeeCCCccCceEEcCCC
Confidence            9999999999 9999999999999999855332    12             23556899999999995 46888874  


Q ss_pred             -cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       347 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                       |++|++||..+ ++.+..+......                .++.|++..+-|+++-
T Consensus       366 ~D~~i~fwn~~~-g~~i~~vdtgsQV----------------csL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  366 ADRCIKFWNTNT-GARIDSVDTGSQV----------------CSLIWSKKYKELLSTH  406 (484)
T ss_pred             cccEEEEEEcCC-CcEecccccCCce----------------eeEEEcCCCCEEEEec
Confidence             49999999986 7877777655543                6999999987666543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.8e-22  Score=175.81  Aligned_cols=240  Identities=18%  Similarity=0.294  Sum_probs=174.4

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      +....+|+.+++-..++.++.. .++||.+......                       .++...+++....        
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn~--------   86 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQNK--------   86 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeecccccce--------
Confidence            4567888999998888888754 7889987654321                       0111122222210        


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                       --.+..|.|. +-+.++|++++..|.|.+||+.....                                          
T Consensus        87 -~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------------------------  122 (839)
T KOG0269|consen   87 -FYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIR------------------------------------------  122 (839)
T ss_pred             -eeehhhcccc-cchhhhheeecCCCcEEEEecCcccc------------------------------------------
Confidence             0356678896 56788999999999999999975211                                          


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                     .+.+..| ..|...++++.|++. ..+|++| +||.|++||++ ......+       +.+....
T Consensus       123 ---------------nk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t-------~~~nSES  178 (839)
T KOG0269|consen  123 ---------------NKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKST-------FRSNSES  178 (839)
T ss_pred             ---------------chhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeee-ccccccc-------ccccchh
Confidence                           0112222 789999999999986 4677788 99999999999 5555544       4567788


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      |+.+.|+|..+.+|+++...|.+.+||+|....+   ...             +.+|.++|.++.|+|++.+||||+ |+
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---~~k-------------~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---EKK-------------LTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchhH---HHH-------------hhcccCceEEEeecCCCceeeecCCCc
Confidence            9999999987789999999999999999986543   122             356789999999999999999998 69


Q ss_pred             eEEEEEccCCCc--ceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-EEEccc
Q 015290          349 NLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSY  404 (409)
Q Consensus       349 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~s~s~  404 (409)
                      .|+|||... .+  ++.++....                +|.+++|-|+.++ ||+++.
T Consensus       243 ~vkiWd~t~-~~~~~~~tInTia----------------pv~rVkWRP~~~~hLAtcsm  284 (839)
T KOG0269|consen  243 MVKIWDMTD-SRAKPKHTINTIA----------------PVGRVKWRPARSYHLATCSM  284 (839)
T ss_pred             cEEEEeccC-CCccceeEEeecc----------------eeeeeeeccCccchhhhhhc
Confidence            999999973 33  333333222                2369999998764 666653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=7.5e-21  Score=167.42  Aligned_cols=269  Identities=14%  Similarity=0.189  Sum_probs=200.9

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .|..++|-|||..|+.+.. ..+.+||...+.                           .+.++++|.            
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~---------------------------llqtLKgHK------------   53 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT---------------------------LLQPLKGHK------------   53 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcc---------------------------ccccccccc------------
Confidence            8999999999999888864 579999999887                           367899999            


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +.|++++|  +.||+.|++|+.|+.|.+|...-   .-+.++.+...+.|++|.+.+-...+|..+.             
T Consensus        54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-------------  115 (1081)
T KOG1538|consen   54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-------------  115 (1081)
T ss_pred             ceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-------------
Confidence            89999999  89999999999999999997543   3344555666777887777776666665432             


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                        .-+|..+...    +..  ......+.+.+|..||++++.| .+|+|.+-+-. ..+...+     .+-.+..++|.+
T Consensus       116 --FglWS~~qK~----V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~Rpgg~Nspiws  181 (1081)
T KOG1538|consen  116 --FGLWSPEQKS----VSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----ERPGGSNSPIWS  181 (1081)
T ss_pred             --ccccChhhhh----HHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----eCCCCCCCCceE
Confidence              3344443211    111  1234567899999999999999 99999998765 3333332     123567789999


Q ss_pred             EEEeCCCC----CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          273 AEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       273 ~~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      ++|+|...    ..++......++.++.+..... .+ .+.+.                -...++.+.++|.|++.|+ +
T Consensus       182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-gk-~r~L~----------------FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-GK-DRALN----------------FDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             EEecCCCCCCccceEEEEeccceeEEEEecceee-cc-cccCC----------------CCchhheeccCCcEEEEccCC
Confidence            99998742    3677777777888877765321 10 01111                2456889999999999875 6


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      +.+++|--+  |-.+.++.....++               +.++..|++++++.|+.||+|.
T Consensus       244 k~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  244 KQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             CceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeee
Confidence            999999864  77788887777776               8999999999999999999973

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=1.2e-19  Score=158.96  Aligned_cols=266  Identities=10%  Similarity=0.096  Sum_probs=171.3

Q ss_pred             CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (409)
Q Consensus        44 ~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (409)
                      +..+++++.|+.|.+||..+++                           .+..+..+.             .+.++.|  
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~---------------------------~~~~~~~~~-------------~~~~l~~--   38 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE---------------------------VTRTFPVGQ-------------RPRGITL--   38 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc---------------------------eEEEEECCC-------------CCCceEE--
Confidence            3578899999999999998765                           344555554             4678999  


Q ss_pred             cCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecC
Q 015290          124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (409)
Q Consensus       124 s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (409)
                      +|+++.+ ++++.++.|++||..+++.........              ......+++++..++... ..++.+++||++
T Consensus        39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~g~~l~~~~-~~~~~l~~~d~~  103 (300)
T TIGR03866        39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--------------DPELFALHPNGKILYIAN-EDDNLVTVIDIE  103 (300)
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--------------CccEEEECCCCCEEEEEc-CCCCeEEEEECC
Confidence            7899876 566788999999998876654322111              011223344444433222 136799999997


Q ss_pred             CcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCC-eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC
Q 015290          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (409)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (409)
                      +.   +.+..+  .+...+.+++|+|++++++++ .++ .+.+||.. .......+       . ....+..++|+|++ 
T Consensus       104 ~~---~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~~~~~~s~dg-  168 (300)
T TIGR03866       104 TR---KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV-------L-VDQRPRFAEFTADG-  168 (300)
T ss_pred             CC---eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE-------E-cCCCccEEEECCCC-
Confidence            63   333333  223346789999999999988 554 56778987 44444331       1 12245679999999 


Q ss_pred             CEEE-EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e-cCeEEEEEccC
Q 015290          281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRM  357 (409)
Q Consensus       281 ~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~-~~~v~iwd~~~  357 (409)
                      ++|+ ++..++.|++||+++++..    ..+..+....      .........++|+|++++++.+ . ++.+.+||+.+
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            7664 5556999999999987531    2221100000      0001123468899999986554 3 48899999975


Q ss_pred             CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc-ccCCCC
Q 015290          358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYRRDN  408 (409)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~-s~dg~i  408 (409)
                       ++.+..+..+. .+               .+++|+|+|++|+++ +.+|+|
T Consensus       239 -~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       239 -YEVLDYLLVGQ-RV---------------WQLAFTPDEKYLLTTNGVSNDV  273 (300)
T ss_pred             -CcEEEEEEeCC-Cc---------------ceEEECCCCCEEEEEcCCCCeE
Confidence             66655543222 22               589999999999876 456654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=7.1e-22  Score=159.61  Aligned_cols=261  Identities=15%  Similarity=0.213  Sum_probs=180.8

Q ss_pred             cCCCcEEEEEECCC----CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        30 ~h~~~v~~v~~~~~----~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      .|......++|+-|    ..++|.|+.-|.|+|.|+..++                           +...+.+|.    
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG----  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHG----  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh---------------------------hccceeccC----
Confidence            37778888999874    3488999999999999998776                           456789999    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              ..|+.|.++| .+.++++++|.|.+||+|++++..+..++..                              
T Consensus       136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG------------------------------  176 (385)
T KOG1034|consen  136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGG------------------------------  176 (385)
T ss_pred             --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecc------------------------------
Confidence                    8999999986 5567999999999999999999887665431                              


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeee-------
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD-------  257 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~-------  257 (409)
                                                  ..+|.+.|.++.|+++|.+++++ .|.+|++|++.. .+....+.       
T Consensus       177 ----------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~-~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  177 ----------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV-KEFKNKLELSITYSP  227 (385)
T ss_pred             ----------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh-hHHhhhhhhhcccCC
Confidence                                        27899999999999999999998 999999999972 11100000       


Q ss_pred             -------------cCC-CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccc
Q 015290          258 -------------MKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (409)
Q Consensus       258 -------------~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (409)
                                   ++. .+-.-|..+|.|+.|-  | .++++-|-++.|..|..-.-+..   +...............+
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~---~~~vkp~es~~Ti~~~~  301 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEES---IHNVKPPESATTILGEF  301 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhh---hhccCCCccceeeeeEe
Confidence                         000 0123467777788876  4 78999899999999986221110   00000000000000112


Q ss_pred             cccccceeee--EeccCCCEEEEeec-CeEEEEEccCCCcc-eEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290          324 TEIIASISDI--KFANDGQHLLSRDY-MNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (409)
Q Consensus       324 ~~~~~~i~~~--~~s~~g~~l~sg~~-~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  399 (409)
                      .-....|+-+  +|.|-+++||.|.. |.|.+||++....+ ..++..+.             +.-.|...+||.||.+|
T Consensus       302 ~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-------------~~~tVRQ~sfS~dgs~l  368 (385)
T KOG1034|consen  302 DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-------------SGSTVRQTSFSRDGSIL  368 (385)
T ss_pred             ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-------------ccceeeeeeecccCcEE
Confidence            2123345544  55666889999987 99999999863221 12222111             22234799999999999


Q ss_pred             EEcccCCCC
Q 015290          400 ATGSYRRDN  408 (409)
Q Consensus       400 ~s~s~dg~i  408 (409)
                      +...+|++|
T Consensus       369 v~vcdd~~V  377 (385)
T KOG1034|consen  369 VLVCDDGTV  377 (385)
T ss_pred             EEEeCCCcE
Confidence            999999987

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.3e-22  Score=165.93  Aligned_cols=237  Identities=17%  Similarity=0.235  Sum_probs=174.1

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (409)
                      .+..|.||.            +.|.+++=+  |.. ..+++|+.||.|+|||+.+..+...+..+.             +
T Consensus        58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~-------------G  110 (433)
T KOG0268|consen   58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE-------------G  110 (433)
T ss_pred             chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeeccc-------------C
Confidence            456678888            899999985  444 578999999999999999887766554332             1


Q ss_pred             CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCc
Q 015290          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~  251 (409)
                      .+....... ..++..|.   |.+|+.|.++.    .+++++ . ....+..+.-+..+..++++ ...|.|||.+ ...
T Consensus       111 ~V~Gi~v~~-~~~~tvgd---DKtvK~wk~~~----~p~~ti-l-g~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~-R~~  178 (433)
T KOG0268|consen  111 LVRGICVTQ-TSFFTVGD---DKTVKQWKIDG----PPLHTI-L-GKSVYLGIDHHRKNSVFATC-GEQIDIWDEQ-RDN  178 (433)
T ss_pred             ceeeEEecc-cceEEecC---CcceeeeeccC----Ccceee-e-cccccccccccccccccccc-Cceeeecccc-cCC
Confidence            111111111 23333333   88999999886    355555 2 23445666666666667665 2358999998 555


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                      ++..       +.-....|.++.|+|....+|+++..|+.|.+||++.+.+..+    .-.              ...-+
T Consensus       179 Pv~s-------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K----Vi~--------------~mRTN  233 (433)
T KOG0268|consen  179 PVSS-------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK----VIL--------------TMRTN  233 (433)
T ss_pred             ccce-------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce----eee--------------ecccc
Confidence            6655       4555678999999998867888898999999999999875322    211              12457


Q ss_pred             eeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          332 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       332 ~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .++|+|.+-.+++|+ |..++.||++.-..++..+.+|...+               .+++|||.|+-+++||.|.+|
T Consensus       234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksI  296 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSI  296 (433)
T ss_pred             ceecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceE
Confidence            899999776666776 49999999997778999999999987               699999999999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=2.7e-21  Score=169.15  Aligned_cols=282  Identities=14%  Similarity=0.108  Sum_probs=181.5

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      .....|.+.|..+.|-|-...|++++.|.++++||+.+....                         -...+.||+    
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~----  144 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT----  144 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc----
Confidence            445669999999999996678999999999999999987641                         123478999    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              ..|.+++|.| .+...|++|+.||.|.|||++-........+....  .    ...++.             
T Consensus       145 --------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~--~----~~~n~~-------------  196 (720)
T KOG0321|consen  145 --------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI--Y----GRHNTA-------------  196 (720)
T ss_pred             --------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh--h----ccccCC-------------
Confidence                    8999999975 56668999999999999999865432221110000  0    000000             


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeE---EEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS---ISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~---l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      +              .......+.++.. .++...|.+   +.+..|...||++  .|+.|++||++......+.-....
T Consensus       197 p--------------tpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~  261 (720)
T KOG0321|consen  197 P--------------TPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS  261 (720)
T ss_pred             C--------------CCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence            0              0000000111111 233333333   4445677788886  599999999994433322221222


Q ss_pred             CcCcCc---cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc
Q 015290          261 SNMDDL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (409)
Q Consensus       261 ~~~~~~---~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  337 (409)
                      ..+..|   ...+.++..+..| .+|.+.+.|+.|.+|++++-...  +...+.++.     .      ..--..-..+|
T Consensus       262 ~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~-----~------~sf~vks~lSp  327 (720)
T KOG0321|consen  262 DKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKL-----N------SSFYVKSELSP  327 (720)
T ss_pred             cCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccCcc-----c------ceeeeeeecCC
Confidence            223333   3467888888888 66666666999999999875321  112222210     0      01122345789


Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN  408 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i  408 (409)
                      |+.+|++|+ |...++|.+.+.......+.+|...+               ++++|.|.. .-+++|++|-.+
T Consensus       328 d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w~pS~~t~v~TcSdD~~~  385 (720)
T KOG0321|consen  328 DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV---------------TTVRWLPSATTPVATCSDDFRV  385 (720)
T ss_pred             CCceEeccCCCcceeeeeecCccCChhhhhCcceEE---------------EEEeeccccCCCceeeccCcce
Confidence            999999997 59999999987677788888898876               799999853 346677888654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=6.9e-20  Score=156.28  Aligned_cols=315  Identities=12%  Similarity=0.083  Sum_probs=200.5

Q ss_pred             CCccccCCCcEEEEEECCCCCEEEEEecCC--------eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee
Q 015290           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE   96 (409)
Q Consensus        25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (409)
                      +-...+|.+.|.|++.+||...+|+|-..|        .+++||..+..-                           +..
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L~V  149 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------LHV  149 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------eee
Confidence            344566999999999999998999886665        489999765441                           223


Q ss_pred             ecCCCccccccccceeccceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                      +..-.            ..|.+++|.+...|.+++..  +.+..+.+||...+......             ...+..++
T Consensus       150 ~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-------------k~sne~v~  204 (626)
T KOG2106|consen  150 IGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-------------KTSNEVVF  204 (626)
T ss_pred             ecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-------------eeccceEE
Confidence            33223            68999999765556666654  66778999998765432211             11233444


Q ss_pred             eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  253 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~  253 (409)
                      .+.++|....+...-.  .+.+.+|+.+.....+....|.......|.|++|.++|+ +++| .+|.|.||+.. ..+..
T Consensus       205 ~a~FHPtd~nliit~G--k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~  280 (626)
T KOG2106|consen  205 LATFHPTDPNLIITCG--KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRIS  280 (626)
T ss_pred             EEEeccCCCcEEEEeC--CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEE
Confidence            4555554433322211  568999999887766666666445567899999999985 7888 99999999997 44433


Q ss_pred             eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc-------ccc-ccccccc----------
Q 015290          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDAAE----------  315 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-------~~~-~~~~~~~----------  315 (409)
                      +.       ...|.+.|.+++.-.+| . |++|+.|..|..||-.-.++...       .++ +.+.+.+          
T Consensus       281 k~-------~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  281 KQ-------VHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             eE-------eeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            33       24899999999999998 5 55599999999999332221100       000 0111000          


Q ss_pred             -----ccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEE---------EecccCcccc------
Q 015290          316 -----SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT---------FKIHEHLRPK------  374 (409)
Q Consensus       316 -----~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~---------~~~~~~~~~~------  374 (409)
                           .........+|....+.++.+|+...+++++ |+.+++|+ .  .++.-+         ...|...+-.      
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G  428 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPAECADFHPSGVVAVGTATG  428 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCceeEeeccCcceEEEeeccc
Confidence                 0000012246888899999999888777776 59999998 2  222111         1111111000      


Q ss_pred             --------cccc-c-CCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          375 --------LCDL-Y-NNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       375 --------~~~~-~-~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                              ..++ . +.+ ...+..++|+|+|.+||.||.|+.|
T Consensus       429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence                    0000 0 011 2234799999999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=2.1e-20  Score=165.13  Aligned_cols=299  Identities=13%  Similarity=0.084  Sum_probs=193.4

Q ss_pred             cccCCCcEEEEEECCCCC---EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           28 ELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~---~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      +-+|..+|+|+.|-|+.+   ++++|+.|+.|.+|.+....                         ...+..+++|.   
T Consensus        50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~-------------------------~~~i~~~~g~~---  101 (764)
T KOG1063|consen   50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY-------------------------LIKIYTIQGHC---  101 (764)
T ss_pred             ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh-------------------------eEEEEeecCcc---
Confidence            445999999999999887   89999999999999998432                         23567788877   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCC--Cc-ccccccccccccCceeccCCCC
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH--FP-FVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                               ..+.|+.-    ......+.+.|+++.+||.+..+........+  .. ...|+.....++.         
T Consensus       102 ---------~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~---------  159 (764)
T KOG1063|consen  102 ---------KECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT---------  159 (764)
T ss_pred             ---------eeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCc---------
Confidence                     55555543    22222233789999999996555222111111  11 0112222222222         


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC---eEEEe-cCCeEEEEEccCCC-------
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSA-DDLRINLWNLEISD-------  250 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~l~~~-~d~~i~lwd~~~~~-------  250 (409)
                       -.++.|+.  +..+.++.-.. ...+.+..+ .+|.+.|.+++|...+.   +|+++ +|..|+||.+...+       
T Consensus       160 -~lla~Ggs--~~~v~~~s~~~-d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~  234 (764)
T KOG1063|consen  160 -FLLACGGS--KFVVDLYSSSA-DSFARVAEL-EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER  234 (764)
T ss_pred             -EEEEecCc--ceEEEEeccCC-cceeEEEEe-eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc
Confidence             22233322  33455554432 123333444 89999999999976543   66778 99999999986332       


Q ss_pred             -------------ceeeeeec--CC-CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc
Q 015290          251 -------------QCFNIVDM--KP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (409)
Q Consensus       251 -------------~~~~~~~~--~~-~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  314 (409)
                                   .....+.+  .. .-+.+|.++|+++.|+|.+ ..|+++|.|.++.+|......-..  ....+.  
T Consensus       235 e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiW--v~~vRl--  309 (764)
T KOG1063|consen  235 EDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIW--VDVVRL--  309 (764)
T ss_pred             ccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceE--EEEEEe--
Confidence                         01101110  00 1235899999999999999 899999999999999876542111  011111  


Q ss_pred             cccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCC--cceEEEecccCcccccccccCCCCccceeeEE
Q 015290          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (409)
                            ....+.........|+|++..+++-+. |..++|......  .....+.||...+               .+++
T Consensus       310 ------Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V---------------~dv~  368 (764)
T KOG1063|consen  310 ------GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV---------------KDVD  368 (764)
T ss_pred             ------ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc---------------eeee
Confidence                  001122356888999999988888776 999999932111  3455677888876               6999


Q ss_pred             EcCCCCeEEEcccCCC
Q 015290          392 VSGDGLHFATGSYRRD  407 (409)
Q Consensus       392 ~spdg~~l~s~s~dg~  407 (409)
                      |+|.|.+|++.|.|.+
T Consensus       369 W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  369 WDPSGEFLLSVSLDQT  384 (764)
T ss_pred             ecCCCCEEEEeccccc
Confidence            9999999999999975

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=158.12  Aligned_cols=167  Identities=18%  Similarity=0.195  Sum_probs=133.1

Q ss_pred             ceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          207 ARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       207 ~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                      ..++.++ .+|...=..|+|||- ...|++| .-+.|++|.... +.-.    +....+.+|...|..++|+|....+|+
T Consensus       201 ~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~----vd~~Pf~gH~~SVEDLqWSptE~~vfa  274 (440)
T KOG0302|consen  201 FRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWK----VDQRPFTGHTKSVEDLQWSPTEDGVFA  274 (440)
T ss_pred             cCceEEe-cccCccceeeecccccccccccCccccceEeeeecc-Ccee----ecCccccccccchhhhccCCccCceEE
Confidence            3556666 889988899999994 2358889 889999999883 3211    122347789999999999998878999


Q ss_pred             EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccC--CCcc
Q 015290          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTP  361 (409)
Q Consensus       285 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~--~~~~  361 (409)
                      +||.||+|+|||+|.+...   ..++            .+.|.+.|+.+.|+-+-.+||+|+| |+++|||++.  .+++
T Consensus       275 ScS~DgsIrIWDiRs~~~~---~~~~------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGPKK---AAVS------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             eeecCceEEEEEecCCCcc---ceeE------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence            9999999999999997421   0111            1456789999999998889999987 9999999984  3688


Q ss_pred             eEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCCC
Q 015290          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDNG  409 (409)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i~  409 (409)
                      +..|+.|..++               +++.|+|. ...|++++.|..|+
T Consensus       340 VA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  340 VATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             ceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEE
Confidence            99999999987               79999995 55788888888763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.8e-22  Score=183.65  Aligned_cols=266  Identities=14%  Similarity=0.210  Sum_probs=194.0

Q ss_pred             ceeeehhccCC--CCCccccCCCcEEEEEECCCCCE----EEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc
Q 015290           13 EWKCSQAFGER--NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (409)
Q Consensus        13 ~w~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~----la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (409)
                      .|++.......  .+...++-..+.+.++|.+.|..    ||.|..||.|.+||...-..                    
T Consensus        43 ifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~--------------------  102 (1049)
T KOG0307|consen   43 IFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA--------------------  102 (1049)
T ss_pred             eeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc--------------------
Confidence            45555443332  34555566788999999997765    88899999999999875210                    


Q ss_pred             CCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccc
Q 015290           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (409)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (409)
                       ..+...+..+..|+            +.|..+.|++ -.+..|++|+.||.|.|||+++-+.-....            
T Consensus       103 -~~~~~~la~~~~h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~------------  156 (1049)
T KOG0307|consen  103 -NASEEVLATKSKHT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG------------  156 (1049)
T ss_pred             -CcchHHHhhhcccC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC------------
Confidence             00223566778888            9999999953 344599999999999999998743211100            


Q ss_pred             cccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEE
Q 015290          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLW  244 (409)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lw  244 (409)
                                                                     -......|.+++|+.. ...|+++ .+|.+.||
T Consensus       157 -----------------------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW  189 (1049)
T KOG0307|consen  157 -----------------------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW  189 (1049)
T ss_pred             -----------------------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence                                                           0234567999999986 4566777 89999999


Q ss_pred             EccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcc
Q 015290          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (409)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  321 (409)
                      |++.....+..-      .......+..++|+|++...+++++.|   -.|.+||+|....   ..++++          
T Consensus       190 Dlr~~~pii~ls------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~----------  250 (1049)
T KOG0307|consen  190 DLRKKKPIIKLS------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILE----------  250 (1049)
T ss_pred             cccCCCcccccc------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhc----------
Confidence            999544444321      122224578999999987777777765   3699999987432   234444          


Q ss_pred             cccccccceeeeEeccCC-CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-e
Q 015290          322 FFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-H  398 (409)
Q Consensus       322 ~~~~~~~~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~  398 (409)
                         +|...|.++.|++.+ ++|++++ |+.|.+|+..+ ++.+..+....++.               +.+.|+|... .
T Consensus       251 ---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~  311 (1049)
T KOG0307|consen  251 ---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSV  311 (1049)
T ss_pred             ---ccccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcch
Confidence               457889999999977 7777765 69999999987 89999998877775               6999999765 8


Q ss_pred             EEEcccCCCCC
Q 015290          399 FATGSYRRDNG  409 (409)
Q Consensus       399 l~s~s~dg~i~  409 (409)
                      ++.++-||.|.
T Consensus       312 ~A~asfdgkI~  322 (1049)
T KOG0307|consen  312 MAAASFDGKIS  322 (1049)
T ss_pred             hhhheecccee
Confidence            88999999873

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=4.3e-20  Score=149.11  Aligned_cols=299  Identities=12%  Similarity=0.096  Sum_probs=202.4

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      .....+.|+|||.-|++-+.|..+.+|++.......                   ...+  ...+..|.     ......
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~-------------------~~~~--~~~~~~~~-----~~r~~e  103 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK-------------------KADG--PLNFSKHL-----SYRYQE  103 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhccc-------------------CCCC--ccccccce-----eEEecc
Confidence            456688999999999999999999999986432100                   0000  00001111     000011


Q ss_pred             ccceEEEEEEe-----cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          113 EEKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       113 ~~~v~~l~~~~-----s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      ...|..-+|.+     .|+..++++.+.|.-|++||.-+++.......-...        ..--...+..+++++..++.
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~--------de~taAhsL~Fs~DGeqlfa  175 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQ--------DEYTAAHSLQFSPDGEQLFA  175 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhH--------HhhhhheeEEecCCCCeEee
Confidence            14678888875     477789999999999999999999877654321110        11123345566777777777


Q ss_pred             ccccccceeEEEecCC-cccceeeeeec---cccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          188 LEWTENMATKIANVGN-SVHARCQKVYP---HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~---~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      |.   ...|+++|+.. ........++.   .+..+-+.+++|+|.. +.++.| ...++-||.-. .+.++.+      
T Consensus       176 Gy---krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~l------  245 (406)
T KOG2919|consen  176 GY---KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQL------  245 (406)
T ss_pred             cc---cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceee------
Confidence            65   67899999943 22222222221   2346678899999965 478888 88888888877 5666666      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                       +.+|.+.|+.++|.++| +.|.+|+. |..|..||+|.....   +..+..|....          ..-.-....|+|+
T Consensus       246 -lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~p---v~~L~rhv~~T----------NQRI~FDld~~~~  310 (406)
T KOG2919|consen  246 -LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDP---VYALERHVGDT----------NQRILFDLDPKGE  310 (406)
T ss_pred             -ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccch---hhhhhhhccCc----------cceEEEecCCCCc
Confidence             67999999999999999 78887764 778999999985532   23334432111          1222355678999


Q ss_pred             EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +|++|+ +|.|++||++..+..+..+..+..-+               ..++++|-=.++|+++..
T Consensus       311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v---------------NgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV---------------NGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             eeeccCCCccEEEEecCCCCCcccccccccccc---------------cceecCcccceeeeccCc
Confidence            999996 69999999987677777777776654               489999987788877654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=4.8e-21  Score=152.70  Aligned_cols=225  Identities=12%  Similarity=0.164  Sum_probs=160.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce---eccC-CCCCceeeccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM---NEHN-PPSFAHGYHLE  189 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~  189 (409)
                      +.|+++..-+ ..|+++++|+.||.|.+||+++-.......+ .....|.+.....++.-.   +..| .-+..++.+++
T Consensus        44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccc-eeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            8999999964 6899999999999999999986431111000 001112222222222211   1122 22345566666


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      |  |.++++||.++.   +....|  .-.+.|.+-+++|-   .-++|+| .+-.|++-|+. .+....+       +.+
T Consensus       122 F--DhtlKVWDtnTl---Q~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~-------LsG  186 (397)
T KOG4283|consen  122 F--DHTLKVWDTNTL---QEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT-------LSG  186 (397)
T ss_pred             c--cceEEEeecccc---eeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee-------ecc
Confidence            6  899999999873   333333  34566888888874   3466778 89999999999 7777776       799


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc-cccCCcccccccccceeeeEeccCCCEEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      |.+.|.++.|+|..+-.|++|+.||.|++||+|...-|   ...+..|. ..++....-..|.+.++.++|+.||.++++
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence            99999999999998778999999999999999986544   35555543 223333355688999999999999999998


Q ss_pred             ee-cCeEEEEEccCC
Q 015290          345 RD-YMNLKLWDIRMD  358 (409)
Q Consensus       345 g~-~~~v~iwd~~~~  358 (409)
                      .+ |..+++|+...+
T Consensus       264 ~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESG  278 (397)
T ss_pred             ccCccceEEeecccC
Confidence            65 799999998763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.9e-21  Score=161.26  Aligned_cols=208  Identities=18%  Similarity=0.250  Sum_probs=161.9

Q ss_pred             ccccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ...+|++.|.+++|+.. ...||+||.|.+|++||+.+++                           +..++..|.    
T Consensus       238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---------------------------p~~s~~~~~----  286 (463)
T KOG0270|consen  238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK---------------------------PKSSITHHG----  286 (463)
T ss_pred             ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC---------------------------cceehhhcC----
Confidence            34569999999999984 4689999999999999999887                           456777787    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              +.|.++.|+| .....|++|+.|++|.+.|.+....                                    
T Consensus       287 --------k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D~R~~~~------------------------------------  321 (463)
T KOG0270|consen  287 --------KKVQTLEWHP-YEPSVLLSGSYDGTVALKDCRDPSN------------------------------------  321 (463)
T ss_pred             --------CceeEEEecC-CCceEEEeccccceEEeeeccCccc------------------------------------
Confidence                    8999999985 6778999999999999999985211                                    


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                               .-+-|.                -.+.|-.++|+|.. ..++++ .||+++-+|+|..++++.+       +
T Consensus       322 ---------s~~~wk----------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-------~  369 (463)
T KOG0270|consen  322 ---------SGKEWK----------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-------L  369 (463)
T ss_pred             ---------cCceEE----------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-------E
Confidence                     011121                23567789998875 445567 9999999999987788877       6


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL  342 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l  342 (409)
                      ..|.+.|.++++++..+.++++++.|+.+++|++..........+.+..               +...|.++.|+-. ++
T Consensus       370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~---------------~rl~c~~~~~~~a~~l  434 (463)
T KOG0270|consen  370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL---------------GRLHCFALDPDVAFTL  434 (463)
T ss_pred             EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc---------------cceeecccCCCcceEE
Confidence            8999999999999998889999999999999998765432111122222               3467788888765 45


Q ss_pred             EEeec-CeEEEEEccC
Q 015290          343 LSRDY-MNLKLWDIRM  357 (409)
Q Consensus       343 ~sg~~-~~v~iwd~~~  357 (409)
                      |.|+. +.++|||+.+
T Consensus       435 a~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  435 AFGGEKAVLRVWDIFT  450 (463)
T ss_pred             EecCccceEEEeeccc
Confidence            55665 8899999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.8e-20  Score=149.32  Aligned_cols=235  Identities=18%  Similarity=0.211  Sum_probs=165.0

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+.|..++.+++|.++ ..+++|+.||.|+++|+.++..                            ..+..|.     
T Consensus        49 ~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~----------------------------~~igth~-----   94 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE----------------------------DQIGTHD-----   94 (323)
T ss_pred             hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----------------------------eeeccCC-----
Confidence            34558999999999975 5688999999999999998764                            3456777     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ++|.+|.+  .+....+++|+.|++|++||.++........              ....+.+....++  .+.
T Consensus        95 -------~~i~ci~~--~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--------------~~kkVy~~~v~g~--~Lv  149 (323)
T KOG1036|consen   95 -------EGIRCIEY--SYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--------------QGKKVYCMDVSGN--RLV  149 (323)
T ss_pred             -------CceEEEEe--eccCCeEEEcccCccEEEEeccccccccccc--------------cCceEEEEeccCC--EEE
Confidence                   89999999  4666799999999999999998632222111              1112222222111  122


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      .|.  .+..+.+||+.+.......+.  ......++|+++-|++.-++.+ -||+|.+=.++.. +..+.   +...+..
T Consensus       150 Vg~--~~r~v~iyDLRn~~~~~q~re--S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~s---kkyaFkC  221 (323)
T KOG1036|consen  150 VGT--SDRKVLIYDLRNLDEPFQRRE--SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQS---KKYAFKC  221 (323)
T ss_pred             Eee--cCceEEEEEcccccchhhhcc--ccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhh---hceeEEe
Confidence            211  166899999987554443332  3556678999999988778877 9999988666622 11110   0011334


Q ss_pred             cc---------CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          266 LT---------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       266 ~~---------~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                      |.         .+|++++|+|-. ..|+||+.||.|.+||+.+.+.    ++.+..             ....|.+++|+
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKr----l~q~~~-------------~~~SI~slsfs  283 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKR----LKQLAK-------------YETSISSLSFS  283 (323)
T ss_pred             eecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhh----hhhccC-------------CCCceEEEEec
Confidence            42         478999999997 9999999999999999988653    233322             13579999999


Q ss_pred             cCCCEEEEee
Q 015290          337 NDGQHLLSRD  346 (409)
Q Consensus       337 ~~g~~l~sg~  346 (409)
                      .||..||.++
T Consensus       284 ~dG~~LAia~  293 (323)
T KOG1036|consen  284 MDGSLLAIAS  293 (323)
T ss_pred             cCCCeEEEEe
Confidence            9999999885

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=2.1e-20  Score=148.60  Aligned_cols=251  Identities=18%  Similarity=0.221  Sum_probs=172.7

Q ss_pred             CCCcEEEEEECC-CCCEEEEEecC-------CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCC
Q 015290           31 DVDIVSAIEFDK-TGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHE  101 (409)
Q Consensus        31 h~~~v~~v~~~~-~~~~la~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~  101 (409)
                      |.+.|+.++-+| +.+.|+++-.+       -.+-||.+......                  +.+...+++..+. .+-
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldteav  123 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTEAV  123 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHHHh
Confidence            688999999999 66778877542       23678988754421                  0011122333332 222


Q ss_pred             ccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee-eeeccCCCcccccccccccccCceeccCCC
Q 015290          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (409)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (409)
                                  +.|.||.|.  |++..+++-. |..|.+|++.++... .....                         
T Consensus       124 ------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~s-------------------------  163 (370)
T KOG1007|consen  124 ------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-------------------------  163 (370)
T ss_pred             ------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecc-------------------------
Confidence                        689999995  7888888776 788999999876442 11000                         


Q ss_pred             CCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC--CCCeEEEecCCeEEEEEccCCCceeeeeec
Q 015290          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~  258 (409)
                            .+                         ..+++...++-+|+|  +++.+++..|+++..||+++..+...+   
T Consensus       164 ------s~-------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI---  209 (370)
T KOG1007|consen  164 ------SE-------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI---  209 (370)
T ss_pred             ------cc-------------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch---
Confidence                  00                         023455667788988  688888889999999999954444443   


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  338 (409)
                          -..|...|..+.|+|+...+|++|+.||.|++||.|+.+..                ...+.+|..+++++.|+|.
T Consensus       210 ----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----------------v~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  210 ----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----------------VQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             ----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----------------ccccCCCceEEEEEEecCc
Confidence                46788899999999998779999999999999999985531                1223567889999999996


Q ss_pred             C-CEEEEee-cCeEEEEEccCCC----------------------------cceEEEecccCcccccccccCCCCcccee
Q 015290          339 G-QHLLSRD-YMNLKLWDIRMDS----------------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (409)
Q Consensus       339 g-~~l~sg~-~~~v~iwd~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (409)
                      - ++|++|+ |..|.+|....-.                            ..+.++..|+            +++   +
T Consensus       270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE------------DSV---Y  334 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE------------DSV---Y  334 (370)
T ss_pred             cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc------------cce---E
Confidence            5 5677775 6999999764211                            0112223333            333   5


Q ss_pred             eEEEcCCCC-eEEEcccCCCC
Q 015290          389 ECSVSGDGL-HFATGSYRRDN  408 (409)
Q Consensus       389 ~~~~spdg~-~l~s~s~dg~i  408 (409)
                      +++||.-.. .+|+-|.||.+
T Consensus       335 ~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  335 ALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             EEeeccCCCeeEEEeccCceE
Confidence            999997555 57789999865

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2.2e-20  Score=155.20  Aligned_cols=182  Identities=18%  Similarity=0.312  Sum_probs=140.2

Q ss_pred             CCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+|.++.|.++.. .||||+.|..|+||.+.......                  ..+..+++..|..|.         
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------~~~~V~y~s~Ls~H~---------   65 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------GDMKVEYLSSLSRHT---------   65 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------CceeEEEeecccCCc---------
Confidence            46899999999766 99999999999999988655310                  002345677888888         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         .+|+.+.|  +|+|..|++|+.+|.|.+|....-...   ..   .                               
T Consensus        66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~---d-------------------------------  103 (434)
T KOG1009|consen   66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DA---D-------------------------------  103 (434)
T ss_pred             ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cc---c-------------------------------
Confidence               89999999  799999999999999999987641110   00   0                               


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                         .     ..+...+...++..+.+|...|..++|+|++.+++++ .|..+++||+. .+.....       +.+|...
T Consensus       104 ---~-----e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~y  167 (434)
T KOG1009|consen  104 ---T-----EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHY  167 (434)
T ss_pred             ---c-----hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------ccccccc
Confidence               0     0000000122222237899999999999999999999 99999999999 7877777       7889999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      +..++|.|.+ +++++-+.|...+.+.+..
T Consensus       168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cceeecchhh-hhhhhhccCcccceeeeee
Confidence            9999999999 9999999998777776654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=149.94  Aligned_cols=254  Identities=15%  Similarity=0.202  Sum_probs=161.0

Q ss_pred             eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (409)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (409)
                      +..|++|.            +.|++++|  +.||++|++++.|++|++|+++....+.-.         ++......+..
T Consensus        79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr---------~~R~nve~dhp  135 (420)
T KOG2096|consen   79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHR---------CIRQNVEYDHP  135 (420)
T ss_pred             hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhh---------HhhccccCCCc
Confidence            45678888            99999999  899999999999999999999864322110         00001111222


Q ss_pred             eeccCCCCC-ceeecccccccceeEEEecCCcccceeee--------eeccccccceeEEEeCCCCCeEEEe-cCCeEEE
Q 015290          174 MNEHNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQK--------VYPHAHDFNINSISNNSDCETFVSA-DDLRINL  243 (409)
Q Consensus       174 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~l  243 (409)
                      ....+.++. .++....  .+.++++|.+.....+....        .|...|+-.+..+-...++++++++ .|..|.|
T Consensus       136 T~V~FapDc~s~vv~~~--~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  136 TRVVFAPDCKSVVVSVK--RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL  213 (420)
T ss_pred             eEEEECCCcceEEEEEc--cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence            222233222 2222222  24567777665433322111        1224466667777777788999999 9999999


Q ss_pred             EEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccc
Q 015290          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (409)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (409)
                      |+++  ++.+..++..       ...-+..+.+|+| +++++++...-|++|++--++-     ..++.    -...-.+
T Consensus       214 w~lk--Gq~L~~idtn-------q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kd-----G~fqe----v~rvf~L  274 (420)
T KOG2096|consen  214 WDLK--GQLLQSIDTN-------QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKD-----GTFQE----VKRVFSL  274 (420)
T ss_pred             EecC--Cceeeeeccc-------cccccceeeCCCC-cEEEEecCCCCceEEEEEeccC-----cchhh----hhhhhee
Confidence            9998  7777775332       2334678899999 9999999999999998632211     01110    0011235


Q ss_pred             cccccceeeeEeccCCCEEEEee-cCeEEEEEccC------CCcceEEEecccCcccccccccCCCCccceeeEEEcCCC
Q 015290          324 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (409)
Q Consensus       324 ~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  396 (409)
                      .+|...|..++|+|+.+.+++.+ ||.++|||.+-      +.+.+.+.......           ..-....++.+|.|
T Consensus       275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-----------ag~~p~RL~lsP~g  343 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-----------AGSEPVRLELSPSG  343 (420)
T ss_pred             ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh-----------cCCCceEEEeCCCC
Confidence            78999999999999999999998 59999999753      11222222110000           00001379999999


Q ss_pred             CeEEEc
Q 015290          397 LHFATG  402 (409)
Q Consensus       397 ~~l~s~  402 (409)
                      +.||..
T Consensus       344 ~~lA~s  349 (420)
T KOG2096|consen  344 DSLAVS  349 (420)
T ss_pred             cEEEee
Confidence            988754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.5e-19  Score=145.08  Aligned_cols=268  Identities=13%  Similarity=0.192  Sum_probs=176.7

Q ss_pred             cceeeehhccCCCCCccccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (409)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (409)
                      -.|.+.-..+.        |.+.|..|.|-+  -|+.+|+++.|++++||.-+.....                  ....
T Consensus        47 ~~W~~Ts~Wra--------h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~------------------~~~~  100 (361)
T KOG2445|consen   47 GTWSCTSSWRA--------HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE------------------AHGR  100 (361)
T ss_pred             CceEEeeeEEe--------cCCcEEEEEecCccccceEEEEecCCceeeeeecccccc------------------cccc
Confidence            34666555444        899999999976  6899999999999999986422210                  0011


Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                      ++...+++....            ..|++|.|.|..-|-.|++++.||++|||+.-+--..                   
T Consensus       101 ~Wv~~ttl~Dsr------------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-------------------  149 (361)
T KOG2445|consen  101 RWVRRTTLVDSR------------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-------------------  149 (361)
T ss_pred             eeEEEEEeecCC------------cceeEEEecchhcceEEEEeccCcEEEEEecCCcccc-------------------
Confidence            344455566555            7999999998888999999999999999987543211                   


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEecC------Ce
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSADD------LR  240 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~d------~~  240 (409)
                                                 +-|.+....  +.+......+..+..|+.|+|.   .++|+.|.|      +.
T Consensus       150 ---------------------------s~W~Lq~Ei--~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~  200 (361)
T KOG2445|consen  150 ---------------------------SQWTLQHEI--QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK  200 (361)
T ss_pred             ---------------------------ccchhhhhh--hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccc
Confidence                                       112221100  0000011345566789999875   467888733      38


Q ss_pred             EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC---CEEEEEeCCCeEEEEeCCCcccccccccccccc---c
Q 015290          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRDA---A  314 (409)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~  314 (409)
                      ++||.....+.....+    .++.+|..+|++++|.|+-.   .+||+++.|| |+||.++........-......   .
T Consensus       201 ~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~  275 (361)
T KOG2445|consen  201 VKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD  275 (361)
T ss_pred             eEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence            8999887555232221    34779999999999999743   4899999999 9999987532110000000000   0


Q ss_pred             cccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccC--CCcceEEEecccC
Q 015290          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM--DSTPVATFKIHEH  370 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~--~~~~~~~~~~~~~  370 (409)
                      ..-.....+.+|.+.|+.+.|+-.|..|++.+ ||+||+|....  ..++...++....
T Consensus       276 l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~  334 (361)
T KOG2445|consen  276 LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGS  334 (361)
T ss_pred             cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCC
Confidence            00112334788999999999999999999776 59999998653  1345666655444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.6e-20  Score=157.31  Aligned_cols=236  Identities=13%  Similarity=0.144  Sum_probs=167.3

Q ss_pred             hhccccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc
Q 015290            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (409)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (409)
                      +..+.+.|.++-  + .-......|...|+|+.|+.||.+|++|+.||.|.+|.+.+.-..                  .
T Consensus       101 i~g~lYlWelss--G-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a------------------~  159 (476)
T KOG0646|consen  101 ISGNLYLWELSS--G-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA------------------D  159 (476)
T ss_pred             ccCcEEEEEecc--c-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc------------------c
Confidence            455667788754  1 111122349999999999999999999999999999997643210                  0


Q ss_pred             CCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccc
Q 015290           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (409)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (409)
                      ..-..+++..|.+|.            -+|+++..-+.+...+++|+|.|+++++||+..+.+....             
T Consensus       160 ~~~~~~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-------------  214 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-------------  214 (476)
T ss_pred             cCCCccceeeeccCc------------ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-------------
Confidence            000334678889999            7999999854434568999999999999999988665442             


Q ss_pred             cccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEE
Q 015290          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (409)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd  245 (409)
                                                                       .....+.+++++|.++.++.| .+|.|.+.+
T Consensus       215 -------------------------------------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  215 -------------------------------------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             -------------------------------------------------ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence                                                             234568899999999999999 999999888


Q ss_pred             ccCCC-cee----e---eeecCCCcCcCccC--ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc-ccc
Q 015290          246 LEISD-QCF----N---IVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAA  314 (409)
Q Consensus       246 ~~~~~-~~~----~---~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~  314 (409)
                      +.... +..    +   .-......+.+|.+  .|++++++-|| .+|++|+.||.++|||+.+.+.    ++.+. .  
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~----iRtl~~~--  318 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQC----IRTLQTS--  318 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHH----HHHHhhh--
Confidence            76322 000    0   00011123677877  99999999999 9999999999999999988653    34333 2  


Q ss_pred             cccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEcc
Q 015290          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIR  356 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~  356 (409)
                                  .++|+.+.+.|-.+-...+.+  ..+-.|++.
T Consensus       319 ------------kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  319 ------------KGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             ------------ccccceeEeeccccceecccccCccCCchHhh
Confidence                        457888888665433333322  555556553

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.6e-19  Score=164.55  Aligned_cols=239  Identities=13%  Similarity=0.140  Sum_probs=170.5

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeee-eeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      ..-+.|+|  .++|+.|++|+.|+.|++|+........ ...              ..+..+.+...... .+..++  .
T Consensus        14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------------~~g~~v~~ia~~s~-~f~~~s--~   74 (933)
T KOG1274|consen   14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------------ISGELVSSIACYSN-HFLTGS--E   74 (933)
T ss_pred             CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhh--------------ccCceeEEEeeccc-ceEEee--c
Confidence            77889999  7999999999999999999876552111 100              01222222222222 233333  2


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      +++|..+.+........+.    ...-++++++|+.+|++++.| .|-.|++-++. .......       +.+|.++|.
T Consensus        75 ~~tv~~y~fps~~~~~iL~----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~-------lrgh~apVl  142 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILA----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKV-------LRGHDAPVL  142 (933)
T ss_pred             cceEEEeeCCCCCccceee----eeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchhee-------ecccCCcee
Confidence            7889999887755444443    345678999999999999999 99999999998 4444444       689999999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCC-CEEEEeecCe
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDG-QHLLSRDYMN  349 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g-~~l~sg~~~~  349 (409)
                      ++.|+|.+ ++||+.+.||.|++||+.++.+.    +.+.. - .+    ..... ...+..++|+|+| ++++.+.++.
T Consensus       143 ~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~-v-~k----~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  143 QLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTG-V-DK----DNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhccc-C-Cc----cccccccceeeeeeecCCCCeEEeeccCCe
Confidence            99999999 99999999999999999987652    22222 0 00    00000 3467889999995 5666677899


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |++|+... ......+......-           .  +..+.|+|+|+|||+++.||.|
T Consensus       212 Vkvy~r~~-we~~f~Lr~~~~ss-----------~--~~~~~wsPnG~YiAAs~~~g~I  256 (933)
T KOG1274|consen  212 VKVYSRKG-WELQFKLRDKLSSS-----------K--FSDLQWSPNGKYIAASTLDGQI  256 (933)
T ss_pred             EEEEccCC-ceeheeeccccccc-----------c--eEEEEEcCCCcEEeeeccCCcE
Confidence            99999874 66666665433221           1  1589999999999999999976

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.1e-19  Score=167.69  Aligned_cols=302  Identities=12%  Similarity=0.152  Sum_probs=199.8

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .-..+.|+|-...++++...-.|+|||.+.++.                           +..|..+...         .
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---------------------------l~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---------------------------LNGFDNGAFP---------D 1109 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCce---------------------------eccccCCCCC---------C
Confidence            456788999888899888777999999987763                           3334333311         1


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc---eeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..|+.+.+....|..++++|+.||.||||+-...   +...+..+..   +........... ....|......+..++.
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~---Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS---LSDQLPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc---ccccCccCCCCC-eeeehhhhCCeEEecCC
Confidence            5799999986667788999999999999975432   1111111110   000011111111 22233333333333321


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCc--eeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~  266 (409)
                        -..|++||.+..   ++......+....|+++.-+- .|+.+++| .||.|++||.+....  .+..       ...|
T Consensus      1186 --~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-------~R~h 1253 (1387)
T KOG1517|consen 1186 --VRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-------YREH 1253 (1387)
T ss_pred             --eeEEEEEecccc---eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee-------eccc
Confidence              458999999763   333333245556677766543 47899999 999999999985433  3333       5667


Q ss_pred             cCc--eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          267 TEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       267 ~~~--v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      ...  |..+.+.+.|-..|++|+.+|.|++||+|... ......+... .          ...+.++++..+++...+|+
T Consensus      1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-~----------~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-W----------EYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             CCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-c----------ccCccceeeeeccCCCeeee
Confidence            776  99999999884469999999999999999842 1111111110 0          00235899999999999999


Q ss_pred             eecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290          345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG  409 (409)
Q Consensus       345 g~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~  409 (409)
                      |+.+.|+||++.  |+.+..++.+....        ...+..+.+++|+|-.-.||+|+.|.+|+
T Consensus      1322 Gs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred             cCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEE
Confidence            988999999986  78777777554332        22344457999999999999999998763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1e-19  Score=146.47  Aligned_cols=225  Identities=15%  Similarity=0.234  Sum_probs=164.9

Q ss_pred             EEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecCC
Q 015290           47 LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN  126 (409)
Q Consensus        47 la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~  126 (409)
                      |++|++...|.=+++.-....               ......|...++-.+..|.            ++|++++.    +
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~---------------~~~s~~~~l~~lF~~~aH~------------~sitavAV----s   52 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKG---------------CTDSVKPTLKPLFAFSAHA------------GSITALAV----S   52 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccc---------------cccccceeeeccccccccc------------cceeEEEe----c
Confidence            567777776666655422100               0011233444566678888            99999998    6


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCccc
Q 015290          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (409)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (409)
                      +.++++|+.|-+|+|||+........                                                      
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~------------------------------------------------------   78 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGI------------------------------------------------------   78 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhcc------------------------------------------------------
Confidence            88999999999999999986543221                                                      


Q ss_pred             ceeeeeeccccccceeEEEeCCCCC--eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEE
Q 015290          207 ARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (409)
Q Consensus       207 ~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  283 (409)
                             +..|.+.|+++.|.+...  .|++| .||.|.+|+.. .-.++..       +++|.+.|+.++.+|.+ ++.
T Consensus        79 -------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KLA  142 (362)
T KOG0294|consen   79 -------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KLA  142 (362)
T ss_pred             -------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ceE
Confidence                   146899999999988754  89999 99999999998 4456655       78999999999999999 999


Q ss_pred             EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceE
Q 015290          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  363 (409)
Q Consensus       284 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~  363 (409)
                      ++.+.|+.++.||+-.++..    ...+.              ....+.+.|+|.|.+++.+....|-+|.+.. .....
T Consensus       143 LsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~  203 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFR  203 (362)
T ss_pred             EEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhh
Confidence            99999999999999877631    22222              1234459999999998888889999999975 44444


Q ss_pred             EEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+......                .++.|- ++..|++|++|+.|
T Consensus       204 ~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  204 EIENPKRI----------------LCATFL-DGSELLVGGDNEWI  231 (362)
T ss_pred             hhhccccc----------------eeeeec-CCceEEEecCCceE
Confidence            44333211                355554 67788899888765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=9.6e-20  Score=153.02  Aligned_cols=250  Identities=17%  Similarity=0.210  Sum_probs=168.0

Q ss_pred             EEEEECC-------CCCEEEEEecCCeEEEEeccCCcCCC---CccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           36 SAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTP---NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        36 ~~v~~~~-------~~~~la~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      .|++|..       .|+|+|.|..|..|.|||+.-.....   .+|......+..         ..+--..-.+|+    
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k---------~~k~~~~~~gHT----  243 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK---------KGKRSNSASGHT----  243 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh---------hcccccccccch----
Confidence            4666643       36899999999999999987433210   001000000000         000001124566    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              ..|.+++|+. --.+.|++||.|.+|++||+.++++....                                
T Consensus       244 --------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~--------------------------------  282 (463)
T KOG0270|consen  244 --------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSI--------------------------------  282 (463)
T ss_pred             --------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceeh--------------------------------
Confidence                    8899999952 44568999999999999999998765542                                


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                                                   ..|.+.|.+++|+|. ...|++| .|+++.+.|.+.....-..        
T Consensus       283 -----------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------  325 (463)
T KOG0270|consen  283 -----------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------  325 (463)
T ss_pred             -----------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------
Confidence                                         468899999999996 6788899 9999999999932222111        


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL  342 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l  342 (409)
                      -.-.+.|..++|.|..+..++++..||+|+-+|+|+...     .+|..           ..|.++|.++++++.-. +|
T Consensus       326 wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~-----------~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  326 WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTL-----------KAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEE-----------EeccCCcceEEecCCCCcce
Confidence            113467899999999888999999999999999998542     23333           55688999999998754 56


Q ss_pred             EEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcccCC
Q 015290          343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYRR  406 (409)
Q Consensus       343 ~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~dg  406 (409)
                      ++++ ++.|++|++.- ..+ .....|.-....+            .|+++.|+-. .||.|+..+
T Consensus       390 ~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~  441 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKA  441 (463)
T ss_pred             eeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccc
Confidence            6665 59999999973 222 2222333222211            3777777754 456666554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.9e-19  Score=155.75  Aligned_cols=240  Identities=13%  Similarity=0.138  Sum_probs=173.9

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee-eeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      ..|.+++|  +.+++.||.+-.||.|.+|++..+=. ...........+..+.+            .+. ..+.+.+.  
T Consensus        26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W------------~e~-~RLFS~g~--   88 (691)
T KOG2048|consen   26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAW------------AEG-GRLFSSGL--   88 (691)
T ss_pred             cceEEEEE--eccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEE------------ccC-CeEEeecC--
Confidence            68999999  78888999999999999999987532 23333332332333322            222 22222222  


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      +|.|.-||+.+   .+++..+ ....+.|.+++.+|.+..++.| .||.+..++.. .+......     .+....+.+.
T Consensus        89 sg~i~EwDl~~---lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r-----~l~rq~sRvL  158 (691)
T KOG2048|consen   89 SGSITEWDLHT---LKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKR-----SLMRQKSRVL  158 (691)
T ss_pred             CceEEEEeccc---CceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEe-----ecccccceEE
Confidence            88999999976   4444444 5677899999999999999999 99977777776 44433221     1444568999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc-ccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-Ce
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~  349 (409)
                      +++|+|++ ..+++|+.||.|++||...+..... ..+.... .         ..-..-|+++.|-.++ .|++|+. |+
T Consensus       159 slsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-~---------k~~~~iVWSv~~Lrd~-tI~sgDS~G~  226 (691)
T KOG2048|consen  159 SLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-S---------KREPTIVWSVLFLRDS-TIASGDSAGT  226 (691)
T ss_pred             EEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc-c---------cCCceEEEEEEEeecC-cEEEecCCce
Confidence            99999999 8899999999999999988753210 0001111 0         0013468888888665 7788865 99


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |.+||... +.+++.+..|..-+               .+++..+++.++++++.|+.|
T Consensus       227 V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  227 VTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKI  269 (691)
T ss_pred             EEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCce
Confidence            99999986 89999999888865               699999999999999999976

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=163.98  Aligned_cols=195  Identities=17%  Similarity=0.266  Sum_probs=160.8

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee---cCCCccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF---QSHEPEFDYLK  108 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~~~~~  108 (409)
                      ...+++++.++.|++.+.|...|.|-+|+++.+..                           ...+   ..|.       
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------------------------r~sf~~~~ah~-------  493 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------------------------RKSFGDSPAHK-------  493 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------------------------ecccccCcccc-------
Confidence            36899999999999999999999999999998763                           2233   4566       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ++|++++.  ..-++.+++++.+|.+++||+..+......                                   
T Consensus       494 -----~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-----------------------------------  531 (910)
T KOG1539|consen  494 -----GEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSL-----------------------------------  531 (910)
T ss_pred             -----CceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeee-----------------------------------
Confidence                 89999999  677788999999999999999887643321                                   


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                                 .-...+.++..+.....++.+ .|-.|.++|.. +....+.       +.+|.
T Consensus       532 ---------------------------~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~-t~kvvR~-------f~gh~  576 (910)
T KOG1539|consen  532 ---------------------------RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV-TRKVVRE-------FWGHG  576 (910)
T ss_pred             ---------------------------ccCCCcceeeeeehhhhhhhhcCceeEEEEEch-hhhhhHH-------hhccc
Confidence                                       123456677778777888888 99999999998 5665555       79999


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      +.|++++||||| ++|++++.|++|++||+.++.+.    -.+..              ..+..++.|+|+|.+||+.. 
T Consensus       577 nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lI----D~~~v--------------d~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  577 NRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLI----DGLLV--------------DSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             cceeeeEeCCCC-cEEEEeecCCcEEEEeccCccee----eeEec--------------CCcceeeEECCCCCEEEEEEe
Confidence            999999999999 99999999999999999998653    22322              45789999999999999995 


Q ss_pred             c-CeEEEEEcc
Q 015290          347 Y-MNLKLWDIR  356 (409)
Q Consensus       347 ~-~~v~iwd~~  356 (409)
                      | ..|++|-=.
T Consensus       638 d~~gIylWsNk  648 (910)
T KOG1539|consen  638 DQNGIYLWSNK  648 (910)
T ss_pred             cCceEEEEEch
Confidence            6 899999743

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=8.9e-19  Score=155.62  Aligned_cols=299  Identities=16%  Similarity=0.165  Sum_probs=200.6

Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (409)
                      -++.|++....|.+.-.|..+.|||+.+-.+.                       . -...+.-|.            ..
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----------------------g-k~~s~lyHS------------~c  371 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----------------------G-KCSSMLYHS------------AC  371 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccc-----------------------c-ceeeeeecc------------ce
Confidence            37889999999999999999999999875531                       0 122344566            55


Q ss_pred             eEEEEEEe----c------CCCCEEEEEeCCCeEEEEEcCCceeeeee-----ccCCCc--------ccc----------
Q 015290          116 INRVRWCA----A------PNGSMFILSTNDKTIKLWKVRDQKVKKIK-----EMDHFP--------FVS----------  162 (409)
Q Consensus       116 v~~l~~~~----s------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~--------~~~----------  162 (409)
                      |++|.-.|    +      |.+ .|++|+.|++|++|++....-..++     ..+...        .+.          
T Consensus       372 iW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk  450 (1080)
T KOG1408|consen  372 IWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK  450 (1080)
T ss_pred             eeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence            66665543    1      222 5999999999999999753211110     000000        000          


Q ss_pred             -cccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEe-c
Q 015290          163 -SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-D  237 (409)
Q Consensus       163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~  237 (409)
                       .++.......+.+..-+++++.+++|..  .|.++++++.....    ..+..+|...|.|+.++..   .++|+++ .
T Consensus       451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr--~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  451 ALVSTCDSRFGFRALAVSPDGQHLASGDR--GGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             cchhhcCcccceEEEEECCCcceecccCc--cCceEEEEehhhhh----hhheecccceeEEEeecCchhhhHhhhhccC
Confidence             0000111222334445778888888876  78999999975221    1223789999999999753   5778888 9


Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  316 (409)
                      |..|.+||....-..+.+       +.+|...|+++.|.-.|- ..+++++.|..|. |+.......   ...+..|+..
T Consensus       525 dRlIHV~Dv~rny~l~qt-------ld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~---g~~f~r~t~t  593 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDLVQT-------LDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASS---GRLFPRHTQT  593 (1080)
T ss_pred             CceEEEEecccccchhhh-------hcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccC---ceeccccccc
Confidence            999999999844444554       789999999999986652 4678888888654 443321100   1222221110


Q ss_pred             cCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC
Q 015290          317 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  395 (409)
Q Consensus       317 ~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  395 (409)
                              --...+..++..|..+++++++ |..|+|||+.. ++..+.|++..+.-..+            ..+...|.
T Consensus       594 --------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~l------------IKv~lDPS  652 (1080)
T KOG1408|consen  594 --------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDL------------IKVILDPS  652 (1080)
T ss_pred             --------cccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCce------------EEEEECCC
Confidence                    0025788999999999999987 59999999986 89999998755432111            37999999


Q ss_pred             CCeEEEcccCCCCC
Q 015290          396 GLHFATGSYRRDNG  409 (409)
Q Consensus       396 g~~l~s~s~dg~i~  409 (409)
                      |.|||+...|++++
T Consensus       653 giY~atScsdktl~  666 (1080)
T KOG1408|consen  653 GIYLATSCSDKTLC  666 (1080)
T ss_pred             ccEEEEeecCCceE
Confidence            99999999998863

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=5e-19  Score=146.68  Aligned_cols=211  Identities=13%  Similarity=0.131  Sum_probs=160.4

Q ss_pred             cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+|+.+|..++|+| +...||+||.|.+|.||++..+...                    .+-.+++..|.||+     
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~-----  131 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ-----  131 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc-----
Confidence            345999999999999 6678999999999999999866541                    22345778899999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ..|--++||| ...+.|++++.|++|.+|++.+++....                                  
T Consensus       132 -------rrVg~V~wHP-tA~NVLlsag~Dn~v~iWnv~tgeali~----------------------------------  169 (472)
T KOG0303|consen  132 -------RRVGLVQWHP-TAPNVLLSAGSDNTVSIWNVGTGEALIT----------------------------------  169 (472)
T ss_pred             -------eeEEEEeecc-cchhhHhhccCCceEEEEeccCCceeee----------------------------------
Confidence                   8999999987 4445899999999999999999865432                                  


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                                                  ..|.+.|.++.|+.+|.+|+++ .|..|+|||.+ .+..+..       -.+
T Consensus       170 ----------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~~  213 (472)
T KOG0303|consen  170 ----------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GVA  213 (472)
T ss_pred             ----------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------ccc
Confidence                                        2489999999999999999999 99999999999 6666654       344


Q ss_pred             ccC-ceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          266 LTE-VITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       266 ~~~-~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      |.+ .-..+.|-.+| .++.+|-   .+..+.+||..+-+... -...+..              ...|.---|.+|...
T Consensus       214 heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~i  277 (472)
T KOG0303|consen  214 HEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTSI  277 (472)
T ss_pred             ccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCCE
Confidence            543 34556777888 7555542   47789999987643220 0112222              345666778888887


Q ss_pred             EEEe--ecCeEEEEEccC
Q 015290          342 LLSR--DYMNLKLWDIRM  357 (409)
Q Consensus       342 l~sg--~~~~v~iwd~~~  357 (409)
                      +..+  +|+.||-|.+..
T Consensus       278 vYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  278 VYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             EEEEecCCcceEEEEecC
Confidence            7654  479999999975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.1e-19  Score=145.22  Aligned_cols=202  Identities=19%  Similarity=0.313  Sum_probs=153.0

Q ss_pred             CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEec
Q 015290           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (409)
Q Consensus        45 ~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (409)
                      ..+|++...|.|++||..++.                           .+..++++.            ..++.++|.-.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~---------------------------~l~~fk~~~------------~~~N~vrf~~~   81 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ---------------------------LLEEFKGPP------------ATTNGVRFISC   81 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh---------------------------hhheecCCC------------CcccceEEecC
Confidence            578899999999999999876                           467889998            78899999621


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (409)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (409)
                      ...+.+.+|+.||+|++||++.........                                                  
T Consensus        82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--------------------------------------------------  111 (376)
T KOG1188|consen   82 DSPHGVISCSSDGTVRLWDIRSQAESARIS--------------------------------------------------  111 (376)
T ss_pred             CCCCeeEEeccCCeEEEEEeecchhhhhee--------------------------------------------------
Confidence            256789999999999999998764433221                                                  


Q ss_pred             ccceeeeeeccccc-cceeEEEeCCCCCeEEEe-----cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC
Q 015290          205 VHARCQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (409)
Q Consensus       205 ~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (409)
                              + ..+. .+..+++.+-.++.+++|     .+-.+.+||++...+.+..+      ...|.+.|+++.|+|.
T Consensus       112 --------~-~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~  176 (376)
T KOG1188|consen  112 --------W-TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS  176 (376)
T ss_pred             --------c-cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence                    1 2233 466778877778888876     36679999999666656554      6789999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-cCeEEEEEcc
Q 015290          279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       279 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~  356 (409)
                      .+++|++||.||.|.+||+...........+++.              ...|.++.|..++ +.|.+-+ ..+..+|++.
T Consensus       177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             CCCeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            9999999999999999999875433322333333              5679999999988 3455555 4999999997


Q ss_pred             CCCcceEEE
Q 015290          357 MDSTPVATF  365 (409)
Q Consensus       357 ~~~~~~~~~  365 (409)
                      . +.+...+
T Consensus       243 ~-~~~~~~~  250 (376)
T KOG1188|consen  243 D-GSEETWL  250 (376)
T ss_pred             C-CChhhcc
Confidence            5 5544333

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=3.4e-19  Score=156.23  Aligned_cols=254  Identities=20%  Similarity=0.296  Sum_probs=169.4

Q ss_pred             EEEECC---CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           37 AIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        37 ~v~~~~---~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      +..|++   ....||.+..||.|.++|.....-       +              ++-+.+..+..|.            
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-------r--------------~ee~~lk~~~aH~------------  100 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-------R--------------LEERQLKKPLAHK------------  100 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhc-------c--------------hhhhhhccccccc------------
Confidence            467776   346889999999999999875431       0              0111234567787            


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +.|.++.|.  |....|++++.|.++++||+.+..+....                                        
T Consensus       101 nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~----------------------------------------  138 (720)
T KOG0321|consen  101 NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR----------------------------------------  138 (720)
T ss_pred             ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce----------------------------------------
Confidence            899999995  66668999999999999999987654320                                        


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCc-eeeeee-------------
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ-CFNIVD-------------  257 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~-~~~~~~-------------  257 (409)
                                        . +.+|.+.|.+++|.|.. ..|++| .||.|.|||++..+. .+..++             
T Consensus       139 ------------------~-~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  139 ------------------L-NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             ------------------e-ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence                              1 26899999999999976 456678 999999999985431 000000             


Q ss_pred             c-----CCCcCcCccCceEE---EEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCccccccc--
Q 015290          258 M-----KPSNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI--  326 (409)
Q Consensus       258 ~-----~~~~~~~~~~~v~~---~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  326 (409)
                      .     +......+...|.+   +.+..|. ..||+++. |+.|+|||++....      .++.   .|.....+..|  
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~------~~r~---ep~~~~~~~t~sk  269 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT------AYRQ---EPRGSDKYPTHSK  269 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc------cccc---CCCcccCccCccc
Confidence            0     00122334444555   5556666 78888887 99999999998642      1111   11111111122  


Q ss_pred             -ccceeeeEeccCCCEEEE-eecCeEEEEEccCC-CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          327 -IASISDIKFANDGQHLLS-RDYMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       327 -~~~i~~~~~s~~g~~l~s-g~~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                       ...+.++.....|.+|.+ +.|+.|++||+... ..++..+.++....           ++  ..-..+||+.+|++|+
T Consensus       270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~SgS  336 (720)
T KOG0321|consen  270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLLSGS  336 (720)
T ss_pred             ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEeccC
Confidence             335777888877877664 56899999999752 24555665554431           11  2456789999999999


Q ss_pred             cCCC
Q 015290          404 YRRD  407 (409)
Q Consensus       404 ~dg~  407 (409)
                      .|..
T Consensus       337 sd~~  340 (720)
T KOG0321|consen  337 SDEQ  340 (720)
T ss_pred             CCcc
Confidence            9975

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=4.8e-19  Score=140.98  Aligned_cols=224  Identities=17%  Similarity=0.266  Sum_probs=160.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +-+.|.|+.|.|++..+|+-. |..|.+|+++.....                          +..+....       +.
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~--------------------------vaev~ss~-------s~  167 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI--------------------------VAEVLSSE-------SA  167 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch--------------------------heeecccc-------cc
Confidence            456999999999999998776 789999999876531                          11111110       01


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      +++...++-+|.|..+|+.+++.+ |++++.||+++.+....+.                                    
T Consensus       168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~------------------------------------  210 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE------------------------------------  210 (370)
T ss_pred             cccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh------------------------------------
Confidence            111577888997767888777655 7899999999765432221                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                              .+|...|..+.|+|+.+. |+++ +||.|++||.+....++..       +.+|..
T Consensus       211 ------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-------l~~HsH  259 (370)
T KOG1007|consen  211 ------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-------LPGHSH  259 (370)
T ss_pred             ------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc-------cCCCce
Confidence                                    678889999999998654 5667 9999999999977777765       799999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc-----cccccc------c-cccCCcccccccccceeeeEec
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-----RILRDA------A-ESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~------~-~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                      +|+++.|+|...+++++|+.|..|.+|...+-....+..     .....+      . .......++..|...|.+++||
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            999999999887899999999999999876532110000     000000      0 0001234678899999999999


Q ss_pred             cCCCEEEEe-e-cCeEEEEEcc
Q 015290          337 NDGQHLLSR-D-YMNLKLWDIR  356 (409)
Q Consensus       337 ~~g~~l~sg-~-~~~v~iwd~~  356 (409)
                      .-..++++. + ||++.|=.+.
T Consensus       340 sadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cCCCeeEEEeccCceEEeecCC
Confidence            877776654 6 5998887764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=3.4e-19  Score=143.99  Aligned_cols=258  Identities=16%  Similarity=0.180  Sum_probs=171.4

Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc-cccccccccccCceecc-------CCCCCceee
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLAEKNFMNEH-------NPPSFAHGY  186 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~  186 (409)
                      -.....|  +|||..|++-+.|..+.+|++................ ...+.. .....+....       ..|+..+.+
T Consensus        51 f~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   51 FLKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hhcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceee
Confidence            4456789  8999999999999999999985322111100000000 000000 0111111111       123333333


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccc---eeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      ..+.  +.-|++||.-+.......+.+  .|...   ..+++|+|||.+|++|....|+++|+..++............-
T Consensus       128 ~ssr--~~PIh~wdaftG~lraSy~~y--dh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  128 VSSR--DQPIHLWDAFTGKLRASYRAY--DHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             eccc--cCceeeeeccccccccchhhh--hhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence            3333  778999999875544444433  34333   3589999999999999889999999954554433322111112


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+..+.+.+++|+|..+..++.|+....+-||.-....++    .++             .+|.+.|+.+.|.++|+.|.
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~ll-------------ggh~gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLL-------------GGHGGGVTHLQWCEDGNKLF  266 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eee-------------cccCCCeeeEEeccCcCeec
Confidence            2346788999999998679999999999888876665432    222             35678999999999999999


Q ss_pred             Eee--cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          344 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       344 sg~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +|+  +..|-.||++..+.++..+..|..-        .+.+|    -....|+|++||+|+.||.|
T Consensus       267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~--------TNQRI----~FDld~~~~~LasG~tdG~V  321 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSRDPVYALERHVGD--------TNQRI----LFDLDPKGEILASGDTDGSV  321 (406)
T ss_pred             ccccCCCeEEEEeehhccchhhhhhhhccC--------ccceE----EEecCCCCceeeccCCCccE
Confidence            997  4899999999877888888877662        12233    36667999999999999976

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.4e-19  Score=156.55  Aligned_cols=262  Identities=14%  Similarity=0.156  Sum_probs=181.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|.+.|.+++|.|....|++|+.||.+++|+++....                   +..-..+++.+|++|.        
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------------------s~~~~~epi~tfraH~--------  344 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------------------SAEKDVEPILTFRAHE--------  344 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------------------ccccceeeeEEEeccc--------
Confidence            3899999999999999999999999999999954221                   1112456788999999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ++|.|+..  .++++.+++|+.||+|+.|++... ....-.+              +                   
T Consensus       345 ----gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n-~dp~ds~--------------d-------------------  384 (577)
T KOG0642|consen  345 ----GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPN-QDPDDSY--------------D-------------------  384 (577)
T ss_pred             ----CceEEEEe--cCCceEEEeeccCceeeeeccCCC-CCccccc--------------C-------------------
Confidence                99999999  799999999999999999987621 1100000              0                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                       ...+...+.||.+.++.+++|+...+|+++ .||++++|+.. .... .++.     .....+
T Consensus       385 -----------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~-~~~~-~~f~-----~~~e~g  440 (577)
T KOG0642|consen  385 -----------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT-EESP-CTFG-----EPKEHG  440 (577)
T ss_pred             -----------------cchhccceeccccceeeeeecccccceeeecCCceEEeeccC-CcCc-cccC-----CccccC
Confidence                             011111237999999999999999899999 99999999987 3333 2211     122234


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-  347 (409)
                      ...++.+-...+...++...-+.-.++++.....    ..++.. ...+...     -...+..+.++|.+.+.+++.+ 
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s-~~~~~~~-----~~~~in~vVs~~~~~~~~~~hed  510 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFES-SASPGPR-----RYPQINKVVSHPTADITFTAHED  510 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccc-cCCCccc-----ccCccceEEecCCCCeeEecccC
Confidence            4466666544312222222222223333333221    122222 1111110     0245788899999988888875 


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.|+++|..+ +.++.....|...+               +++++.|+|.+|++++.||.|
T Consensus       511 ~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv  555 (577)
T KOG0642|consen  511 RSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSV  555 (577)
T ss_pred             Cceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCcee
Confidence            9999999987 89999888888876               699999999999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=9.2e-19  Score=145.11  Aligned_cols=173  Identities=16%  Similarity=0.301  Sum_probs=132.0

Q ss_pred             eecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCcee
Q 015290           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (409)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (409)
                      .+.||+            ++|..++|+| .+...|++||.|.+|+||++-.+.+....                      
T Consensus        76 ~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l----------------------  120 (472)
T KOG0303|consen   76 LVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL----------------------  120 (472)
T ss_pred             CccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc----------------------
Confidence            467888            9999999987 56779999999999999999765443221                      


Q ss_pred             ccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCcee
Q 015290          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCF  253 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~  253 (409)
                                                     ..++..+ .+|...|--++|+|.. +.|+++ .|.+|.+||+. ++..+
T Consensus       121 -------------------------------tepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeal  167 (472)
T KOG0303|consen  121 -------------------------------TEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEAL  167 (472)
T ss_pred             -------------------------------ccceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEecc-CCcee
Confidence                                           1233333 7999999999999974 567777 99999999999 55544


Q ss_pred             eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  333 (409)
                      -.       +. |.+.|+++.|+.+| .+|++.+.|..|+|||.+.++..    ..-..|.            ...-..+
T Consensus       168 i~-------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~he------------G~k~~Ra  222 (472)
T KOG0303|consen  168 IT-------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHE------------GAKPARA  222 (472)
T ss_pred             ee-------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eeccccc------------CCCccee
Confidence            33       34 99999999999999 99999999999999999998752    1112221            1244567


Q ss_pred             EeccCCCEEEEe-e---cCeEEEEEccCCCcc
Q 015290          334 KFANDGQHLLSR-D---YMNLKLWDIRMDSTP  361 (409)
Q Consensus       334 ~~s~~g~~l~sg-~---~~~v~iwd~~~~~~~  361 (409)
                      .|-.+|.++.+| +   +.++-|||...-.++
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP  254 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEP  254 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccccCc
Confidence            788889877777 2   389999997653344

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.2e-18  Score=134.02  Aligned_cols=233  Identities=15%  Similarity=0.167  Sum_probs=159.1

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..|.+-+++|.+++|+.|..+|.|-+..+......                 +..++.-..+..+++|.           
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd-----------   62 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD-----------   62 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC-----------
Confidence            45677789999999999999999999998754321                 00112223445568888           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ++|+.++|+   | ..|++|+ ||.|+=|..+.....                                          
T Consensus        63 -gpiy~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es------------------------------------------   94 (325)
T KOG0649|consen   63 -GPIYYLAFH---D-DFLLSGG-DGLVYGWEWNEEEES------------------------------------------   94 (325)
T ss_pred             -CCeeeeeee---h-hheeecc-CceEEEeeehhhhhh------------------------------------------
Confidence             999999993   3 3566655 599999988654221                                          


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      .+.-++|.........      ...-..|++|.+.|..+-++.+ .|+.++-||++ ++.....       +.+|.+.+.
T Consensus        95 ~~~K~lwe~~~P~~~~------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH  160 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVD------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVH  160 (325)
T ss_pred             ccchhhhhhcCccccC------cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceee
Confidence            1122334332211100      1122468899999987777777 99999999999 7776666       799999999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCCCEEEEeecCeE
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNL  350 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~sg~~~~v  350 (409)
                      ++.--... ..+++|+.||++|+||.++++. .+.+..+..       ...+..| ..+|.+++-+.  .+|++|+...+
T Consensus       161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~-------~~~lRp~~g~wigala~~e--dWlvCGgGp~l  229 (325)
T KOG0649|consen  161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKH-VSMIEPYKN-------PNLLRPDWGKWIGALAVNE--DWLVCGGGPKL  229 (325)
T ss_pred             eeeecccC-cceeecCCCccEEEEeccccce-eEEeccccC-------hhhcCcccCceeEEEeccC--ceEEecCCCce
Confidence            99984444 5788999999999999999873 222222211       1112222 34677777664  59999988999


Q ss_pred             EEEEccCCCcceEEEec
Q 015290          351 KLWDIRMDSTPVATFKI  367 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~  367 (409)
                      .+|+++. .++...+.-
T Consensus       230 slwhLrs-se~t~vfpi  245 (325)
T KOG0649|consen  230 SLWHLRS-SESTCVFPI  245 (325)
T ss_pred             eEEeccC-CCceEEEec
Confidence            9999986 666666553

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.2e-18  Score=148.62  Aligned_cols=233  Identities=15%  Similarity=0.188  Sum_probs=158.7

Q ss_pred             cceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCc--eeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          114 EKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                      ..+.++.|  +... .|+++  +.|+.|++|.-...  +.......            ..+ ...+.....-..++.+++
T Consensus        35 pg~~s~~w--~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~------------~gd-~~~Cv~~~s~S~y~~sgG   98 (673)
T KOG4378|consen   35 PGDFSFNW--QRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKL------------TGD-NAFCVACASQSLYEISGG   98 (673)
T ss_pred             Ccceeeec--cccc-eEEEeecCCceeEEEecccCCCCccceeecc------------ccc-hHHHHhhhhcceeeeccC
Confidence            46899999  3443 34444  77889999975433  12111111            111 111111111123333333


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                        ..+.|+|||++.    +.+..++.+|+..|+++.++-...+||++ ..|.|.|..+. ++.....+      -.+...
T Consensus        99 --~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f------~~~sgq  165 (673)
T KOG4378|consen   99 --QSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTF------TIDSGQ  165 (673)
T ss_pred             --cCceeeehhhHH----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccce------ecCCCC
Confidence              388999999974    44444458999999999999999999999 99999999998 44443332      122234


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEee-
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-  346 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~-  346 (409)
                      .|.-+.|+|....+|.+++.+|.|.+||+......      +.          ....|..+...++|+|... +|++.+ 
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~------~~----------~~~~HsAP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI------FH----------ASEAHSAPCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCcc------cc----------hhhhccCCcCcceecCCccceEEEecc
Confidence            56789999998667888999999999999875431      11          1345678999999999775 455545 


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+.|.+||.+. .+....+......                ..++|+++|.+|+.|+..|.|
T Consensus       230 Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  230 DKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             cceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceE
Confidence            69999999985 5555555544333                489999999999999998865

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=2.7e-18  Score=150.72  Aligned_cols=156  Identities=22%  Similarity=0.236  Sum_probs=119.0

Q ss_pred             cceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          219 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       219 ~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ..|+.+.|.| |.+.|+.+ +||.|++|.+...+ .-.....+...+..|...|+++.|+|-....|++++.|-+|++||
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g-l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANG-LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCC-CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            3466777777 45689988 99999999998433 222211222347889999999999998778999999999999999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCccccc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  375 (409)
                      +++.+..    ..             +.+|.+.|..++|||||+.+|+.+ ||+|++|..++..+++..-++..+...  
T Consensus       707 l~~~~~~----~~-------------l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg--  767 (1012)
T KOG1445|consen  707 LANAKLY----SR-------------LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRG--  767 (1012)
T ss_pred             hhhhhhh----he-------------eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcc--
Confidence            9987642    22             456789999999999999999987 699999999875566655554433221  


Q ss_pred             ccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       376 ~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                                  -.+.|-=||+++++.+.|.
T Consensus       768 ------------ARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  768 ------------ARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             ------------eeEEEEecCcEEEEecccc
Confidence                        2678888999999888775

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.4e-18  Score=146.83  Aligned_cols=250  Identities=13%  Similarity=0.142  Sum_probs=174.7

Q ss_pred             CCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+|.+..|.|+|. .+++++.......||+.+.+..                         .+..+.+++.        
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------------------------k~~~~~g~e~--------  303 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------------------------KLKPPYGVEE--------  303 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccc-------------------------cccCCCCccc--------
Confidence            57899999999998 8899999999999999987752                         2223344441        


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc-eeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  189 (409)
                         ..+.....  ++++++|+.++..|.|.+.-..+++....++.              ++.+....++.++. ++++++
T Consensus       304 ---~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  304 ---KSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------------EGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             ---chhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhheeee--------------ccEEeeEEEecCCcEEEEEcC
Confidence               45667777  79999999999999999998888876655432              23333333333333 334433


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                         +|.|.+||++..   .|++.+.....-.-++++.++++.+||+| ..|.|.|||...-.  ...-+-+...+.....
T Consensus       365 ---~GeV~v~nl~~~---~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~--~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  365 ---TGEVYVWNLRQN---SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF--ASTNPKPIKTVDNLTT  436 (514)
T ss_pred             ---CceEEEEecCCc---ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh--ccCCCCchhhhhhhhe
Confidence               789999999874   66666622222223567778999999999 99999999975211  0000001112455667


Q ss_pred             ceEEEEEeCCCCCEEEEEeC--CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          269 VITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      .|++++|+|+. ++||.+|.  ...+++-.+.+-...    ..|.. .         ...-+.++|++|||.|-|||.|.
T Consensus       437 ~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVF----sNfP~-~---------n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  437 AITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVF----SNFPT-S---------NTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             eeeeeeeCcch-hhhhhhhhccccceEEEeccceeee----ccCCC-C---------CCcccceEEEEecCCCceEEeec
Confidence            89999999999 99988874  567888887763321    22222 0         11135799999999999999998


Q ss_pred             c-CeEEEEEcc
Q 015290          347 Y-MNLKLWDIR  356 (409)
Q Consensus       347 ~-~~v~iwd~~  356 (409)
                      + |.|.+|.+.
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            7 999999874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=8.5e-18  Score=152.38  Aligned_cols=275  Identities=15%  Similarity=0.190  Sum_probs=176.9

Q ss_pred             cccceeeehhccCCCCCccccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCC
Q 015290           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (409)
Q Consensus        10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (409)
                      ..+.|.+....   .+...+.-...|++++|+| +..++|.|..+|.|.+||+..+...++                   
T Consensus       223 ~~~vW~~~~p~---~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------------  280 (555)
T KOG1587|consen  223 VLLVWSLKNPN---TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------------  280 (555)
T ss_pred             eEEEEecCCCC---CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------------
Confidence            34567776651   2344444578999999999 678889999999999999987663100                   


Q ss_pred             CceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee-eeecc----------CC
Q 015290           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM----------DH  157 (409)
Q Consensus        89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~----------~~  157 (409)
                        ...-.....|.            .+++.+.|..++.+..|++++.||.|..|+++.-..- .....          ..
T Consensus       281 --s~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~  346 (555)
T KOG1587|consen  281 --SGLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK  346 (555)
T ss_pred             --cccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence              00011123444            8999999976555567999999999999987643221 00000          01


Q ss_pred             CcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCccc-c----eeeeeeccccccceeEEEeCCCCCe
Q 015290          158 FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-A----RCQKVYPHAHDFNINSISNNSDCET  232 (409)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~----~~~~~~~~~~~~~v~~l~~~~~~~~  232 (409)
                      .....++.|...+...           +..|.  ..|.|.--+-..... .    +....+ ..|.++|+++.++|-+..
T Consensus       347 ~~~~t~~~F~~~~p~~-----------FiVGT--e~G~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k  412 (555)
T KOG1587|consen  347 AVGATSLKFEPTDPNH-----------FIVGT--EEGKVYKGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPK  412 (555)
T ss_pred             ccceeeEeeccCCCce-----------EEEEc--CCcEEEEEeccCCcccccccccccccc-cccCcceEeeecCCCccc
Confidence            1111222222222111           11111  144333322211111 1    222233 678999999999998766


Q ss_pred             EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290          233 FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (409)
Q Consensus       233 l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  311 (409)
                      ++.. .|.+++||.......++..       +..+...+++++|||..+..|+++..||.|.+||+.......  .....
T Consensus       413 ~fls~gDW~vriWs~~~~~~Pl~~-------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--v~s~~  483 (555)
T KOG1587|consen  413 NFLSVGDWTVRIWSEDVIASPLLS-------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--VLSQK  483 (555)
T ss_pred             eeeeeccceeEeccccCCCCcchh-------hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--ccccc
Confidence            6655 8999999998733333322       456677799999999998899999999999999997643210  11111


Q ss_pred             ccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      .             +....+.+.|++.|+.|++|++ |.+.+|++.
T Consensus       484 ~-------------~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  484 V-------------CSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             c-------------cccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            1             1346778899999999999987 999999995

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.6e-19  Score=168.45  Aligned_cols=203  Identities=19%  Similarity=0.226  Sum_probs=147.9

Q ss_pred             ccceEEEEEEecCCCC----EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          113 EEKINRVRWCAAPNGS----MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ..+-+.++|.  +.|.    +|+.|..||.|.+||...-..-..                                    
T Consensus        64 ~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~------------------------------------  105 (1049)
T KOG0307|consen   64 SNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANAS------------------------------------  105 (1049)
T ss_pred             cccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcc------------------------------------
Confidence            3578899995  4444    488889999999999864200000                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                        ...+..+ ..|.+.|..+.|++... .|++| .||.|.|||+.........-      -...
T Consensus       106 ------------------~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------~~~~  160 (1049)
T KOG0307|consen  106 ------------------EEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------SQAP  160 (1049)
T ss_pred             ------------------hHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC------CCCC
Confidence                              0111222 67999999999999765 89999 99999999998433332210      1223


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEe
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg  345 (409)
                      .+.|.+++|+..-.++|++++.+|.+.|||+|..+..    -.+..   .+        -+..+..++|+|+. ..|+++
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi----i~ls~---~~--------~~~~~S~l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI----IKLSD---TP--------GRMHCSVLAWHPDHATQLLVA  225 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcc----ccccc---CC--------CccceeeeeeCCCCceeeeee
Confidence            5679999999876689999999999999999987542    11111   10        02357899999987 344443


Q ss_pred             --ec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290          346 --DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN  408 (409)
Q Consensus       346 --~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i  408 (409)
                        +|  -.|.+||++....+++++.+|...+               .++.|++.+ .+|+|++.|+.|
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCe
Confidence              34  7899999998778999999999876               699999966 899999999976

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=1.3e-17  Score=134.82  Aligned_cols=222  Identities=14%  Similarity=0.195  Sum_probs=163.7

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ..+|+|.+|++|+..+|++.....|.||...+..                        .++...++..|.          
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd----------   55 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD----------   55 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence            4689999999999999999999999999988765                        356778889998          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEc-CCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                        ..|+.|.|  +|.++.|++|+.|+.-++|.. ..++.+....                                    
T Consensus        56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptlv------------------------------------   95 (361)
T KOG1523|consen   56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV------------------------------------   95 (361)
T ss_pred             --cceeEEee--cCCCCceeEccCCCCccccccCCCCeecccee------------------------------------
Confidence              89999999  789999999999999999998 5554443321                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                             +..+....+++.|+|.++.+++| ....|.+|-++. ....-+   ....-+.+.+.
T Consensus        96 -----------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWWV---sKhikkPirSt  148 (361)
T KOG1523|consen   96 -----------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWWV---SKHIKKPIRST  148 (361)
T ss_pred             -----------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccceeh---hhhhCCccccc
Confidence                                   14577889999999999999999 888999998873 322111   00002446788


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc-cccccccccc--CCcccccccccceeeeEeccCCCEEEEee
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      |++++|+|++ -+|++|+.|+..++|..--.....++. ..+..  .-|  ..+..+....+.+..+.|+|+|..|+-.+
T Consensus       149 v~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs--k~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  149 VTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS--KMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             eeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCcc--CCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            9999999998 999999999999998643221100000 00000  000  01111223357899999999999999665


Q ss_pred             -cCeEEEEEccC
Q 015290          347 -YMNLKLWDIRM  357 (409)
Q Consensus       347 -~~~v~iwd~~~  357 (409)
                       |..+.+-|...
T Consensus       226 Hds~v~~~da~~  237 (361)
T KOG1523|consen  226 HDSTVSFVDAAG  237 (361)
T ss_pred             CCCceEEeecCC
Confidence             69999999864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=2e-18  Score=135.80  Aligned_cols=293  Identities=12%  Similarity=0.112  Sum_probs=184.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCcccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~  109 (409)
                      |...|+++.|-.+++ |.+|..-|.|++|++++...                           ...+++ |.        
T Consensus        13 ~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~---------------------------~~~~r~~g~--------   56 (323)
T KOG0322|consen   13 HSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD---------------------------LPLIRLFGR--------   56 (323)
T ss_pred             ccchheehhhccchh-hhcccccceEEEEEeecCcc---------------------------chhhhhhcc--------
Confidence            889999999988765 88899999999999998763                           334453 33        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc-cccccccccccCceeccCCCCCceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                          ..|+.+.-.  |+ ..+.+-+.|..+.+|++..+....+.......- .|-.+........        ...+.+.
T Consensus        57 ----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~--------eqll~yp  121 (323)
T KOG0322|consen   57 ----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNS--------EQLLEYP  121 (323)
T ss_pred             ----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcc--------hhheecC
Confidence                678888874  44 588999999999999998765544332111100 0000000000000        0001111


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCC--eEEEe-cCCeEEEEEccCCCceeeeeecCC----
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP----  260 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~--~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~----  260 (409)
                      ....+ .+++-|............-..+..+.+.|..+.- .+.  ++++| .+|.+.+||+......+   +++.    
T Consensus       122 ~rgsd-e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~---~~~~~~kv  197 (323)
T KOG0322|consen  122 SRGSD-ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII---QLPQSSKV  197 (323)
T ss_pred             Ccccc-hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee---cccccccc
Confidence            10000 0111121111100100000134456677777533 233  34567 99999999998432221   1111    


Q ss_pred             -CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          261 -SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       261 -~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                       .....|..+|.++.|.+.- ..=++|+.+..+..|.+...............             -...+..+.+-||+
T Consensus       198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-------------knpGv~gvrIRpD~  263 (323)
T KOG0322|consen  198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL-------------KNPGVSGVRIRPDG  263 (323)
T ss_pred             ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe-------------cCCCccceEEccCC
Confidence             1245688999999999876 66778888888999987653111000011111             02468889999999


Q ss_pred             CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.+|+++ |+.||||..++ .+++..++.|...+               .+++|+||...+|.+|.|+.|
T Consensus       264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceE
Confidence            9999998 69999999997 99999999999876               599999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=1.3e-17  Score=135.25  Aligned_cols=274  Identities=15%  Similarity=0.190  Sum_probs=177.3

Q ss_pred             CCCcEEEEEECC-----CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           31 DVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        31 h~~~v~~v~~~~-----~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      |..+|..++|++     +...+|+.+. .++.||.......                        .+.+......     
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------------ir~lq~y~D~-----   86 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------------IRLLQSYADE-----   86 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------------eeeeeeccCC-----
Confidence            788999999996     3356777765 4799999875431                        1122222221     


Q ss_pred             ccccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                           ++++.-..++|.-...  ..++++++.-|.|+|.|+..+++...                               
T Consensus        87 -----d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------------------  130 (385)
T KOG1034|consen   87 -----DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------------------  130 (385)
T ss_pred             -----CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------------------
Confidence                 1226778888854221  34788889999999999987755332                               


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                                                   + .+|...|+.+.++|+. ++++++ .|.+|++|+++ +..++.++    .
T Consensus       131 -----------------------------~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----G  175 (385)
T KOG1034|consen  131 -----------------------------Y-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----G  175 (385)
T ss_pred             -----------------------------e-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----c
Confidence                                         2 6899999999999985 677788 99999999999 78888775    3


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccc--cccc-cc--------ccCCcccccccccce
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRDA-AE--------SHGSKSFFTEIIASI  330 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~-~~--------~~~~~~~~~~~~~~i  330 (409)
                      -..+|.+.|.++.|+++| .+|++++.|..|++|++...+...+....  +... ..        .-...++-.-|...|
T Consensus       176 G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence            357899999999999999 89999999999999999864432111111  0000 00        000111234578888


Q ss_pred             eeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|+.|-  |.++++-+ ++.|..|....-++-+...+..+.....+..+.-..|-.--...+|.|-+++||.|...|.|
T Consensus       255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v  331 (385)
T KOG1034|consen  255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV  331 (385)
T ss_pred             HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence            888887  57888865 59999998721122222222122111111111111111101345666678899998888765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=2.2e-17  Score=131.76  Aligned_cols=256  Identities=10%  Similarity=0.101  Sum_probs=172.7

Q ss_pred             ccCCCcEEEEEECCCC-----CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           29 LQDVDIVSAIEFDKTG-----DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~-----~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      +.|.-+++.+.|.|+.     ++||+++.  .+|+|.+...+.                       ...+...+..+.  
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~-----------------------~~~~~~~L~~~k--  145 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEES-----------------------RVELQSVLNNNK--  145 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCC-----------------------ceehhhhhccCc--
Confidence            4588899999999976     46777653  799999885432                       111111222221  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee--eeeeccCCCcccccccccccccCceeccCCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                           .-++.+++++..|+ .-+-+++.+++-|-+..|||+..+..  .+..-..+..++..+.|....           
T Consensus       146 -----ns~~~aPlTSFDWn-e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----------  208 (364)
T KOG0290|consen  146 -----NSEFCAPLTSFDWN-EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----------  208 (364)
T ss_pred             -----ccccCCcccccccc-cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----------
Confidence                 11222799999997 57888999999999999999998732  222222333333333333322           


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEE-e-cCCeEEEEEccCCCceeeeeec
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVS-A-DDLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~  258 (409)
                      ..++++.  +.||.+|++|+........+..- .....+...++|+++. +++|+ + ....|.+.|++.....+..   
T Consensus       209 ~~~FASv--gaDGSvRmFDLR~leHSTIIYE~-p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~---  282 (364)
T KOG0290|consen  209 RDVFASV--GADGSVRMFDLRSLEHSTIIYED-PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR---  282 (364)
T ss_pred             cceEEEe--cCCCcEEEEEecccccceEEecC-CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh---
Confidence            2233333  34999999999876555555432 1224567789999864 66776 4 6778999999966666655   


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc--cccccccccccccccCCcccccccccceeeeEec
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                          +.+|.+.|+.++|.|..+..|++++.|..+.+||+...-.  ...++-.+..              .+.|+.+.|+
T Consensus       283 ----L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws  344 (364)
T KOG0290|consen  283 ----LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWS  344 (364)
T ss_pred             ----hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeec
Confidence                7899999999999999888999999999999999976321  1111122222              4689999999


Q ss_pred             c-CCCEEEEeecCeEEE
Q 015290          337 N-DGQHLLSRDYMNLKL  352 (409)
Q Consensus       337 ~-~g~~l~sg~~~~v~i  352 (409)
                      + .+.+++.+..+.+.+
T Consensus       345 ~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  345 SSQPDWIAICFGKKLEI  361 (364)
T ss_pred             ccCCCEEEEEecCeeeE
Confidence            6 467888886655443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=1e-17  Score=144.23  Aligned_cols=176  Identities=16%  Similarity=0.260  Sum_probs=136.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ++|.+-.|  +|||.-|++++.||.|++|.-... +...                                         
T Consensus       105 ~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrsGM-LRSt-----------------------------------------  140 (737)
T KOG1524|consen  105 AAISSGRW--SPDGAGLLTAGEDGVIKIWSRSGM-LRST-----------------------------------------  140 (737)
T ss_pred             hhhhhccc--CCCCceeeeecCCceEEEEeccch-HHHH-----------------------------------------
Confidence            88999999  799999999999999999975332 1111                                         


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                                          +.....+|.|++|.|+.+.++.+..+.+.|=-+....+.++        ...|.+-|.++
T Consensus       141 --------------------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~  192 (737)
T KOG1524|consen  141 --------------------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSL  192 (737)
T ss_pred             --------------------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEe
Confidence                                12344679999999999999888777888877774444443        68999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw  353 (409)
                      .|+|.. .++++|+.|-..++||.....       .+..           ..|..+|++++|.|+ +.++.++.+++|+=
T Consensus       193 ~W~~~s-~lI~sgGED~kfKvWD~~G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~  252 (737)
T KOG1524|consen  193 SWSTQS-NIIASGGEDFRFKIWDAQGAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFS  252 (737)
T ss_pred             ecCccc-cceeecCCceeEEeecccCcc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeeeeec
Confidence            999998 999999999999999976643       2322           345679999999999 77788887777722


Q ss_pred             EccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..+            .+.            +   +.++||+||..+++|+..|.+
T Consensus       253 ~p~------------~GS------------i---fnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  253 SPR------------VGS------------I---FNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             CCC------------ccc------------e---EEEEEcCCCceeeccccCceE
Confidence            211            121            2   599999999999999988754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=9.8e-18  Score=144.82  Aligned_cols=246  Identities=21%  Similarity=0.284  Sum_probs=163.1

Q ss_pred             CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      ..+..+|.+.|+|++|+.+|.+||+|+.|-.+.|||.-..+.                          ....-.||.   
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--------------------------lhsI~TgHt---   93 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--------------------------LHSISTGHT---   93 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--------------------------eeeeecccc---
Confidence            345567999999999999999999999999999999875442                          233457888   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               +.|.++.|.|-.+...+++|+.|+.|+++|+...+..-...   ..                         
T Consensus        94 ---------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~---~~-------------------------  136 (758)
T KOG1310|consen   94 ---------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH---GM-------------------------  136 (758)
T ss_pred             ---------cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc---Cc-------------------------
Confidence                     89999999997778899999999999999997532211100   00                         


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCC--
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP--  260 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~--  260 (409)
                              .-+++.              + ..|...|..++..|++ ..+.++ .||+|+-+|++..-.+-...+...  
T Consensus       137 --------~~~~~~--------------~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  137 --------EETTRC--------------W-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             --------cchhhh--------------h-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence                    001112              2 5788899999999998 677788 999999999994332221110000  


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC-----Cccccccc---------
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG-----SKSFFTEI---------  326 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------  326 (409)
                      ..+...--...++.++|..+.+|+.|+.|...++||.|............   ...|.     ..-...+|         
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~---~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM---NTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc---cCCCCcccchhheecCccccCcccccc
Confidence            01111123467899999998999999999999999965422110000000   00110     01111111         


Q ss_pred             --ccceeeeEeccCCCEEEEe-ecCeEEEEEccCCCcce
Q 015290          327 --IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPV  362 (409)
Q Consensus       327 --~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~  362 (409)
                        -..++-++|+|+|.-|+.. +...|+++|+..+..+.
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence              1235678999999655544 55899999997633333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=1.3e-15  Score=134.77  Aligned_cols=252  Identities=10%  Similarity=0.080  Sum_probs=148.2

Q ss_pred             cceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCC-ceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      +....+++  +|++++|+++ ..++.|.+|++.. +.+.......            ..+....+..++++.+++.+...
T Consensus        35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------------~~~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------------LPGSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------------CCCCceEEEECCCCCEEEEEEcC
Confidence            45667888  7999988766 4578899999973 3332221111            01122334455666666655432


Q ss_pred             ccceeEEEecCCcc-cceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          192 ENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       192 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                       ++.+.+|+++... ....+...  .+.....+++++|++++++++  .++.|.+||+...+...... ........ ..
T Consensus       101 -~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~~-g~  175 (330)
T PRK11028        101 -ANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTVE-GA  175 (330)
T ss_pred             -CCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecCC-CC
Confidence             6789999986421 11222222  122345778899999988765  78999999998333221100 00000111 23


Q ss_pred             ceEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      ....+.|+|+| ++++++.. ++.|.+||+............+...+..      +. +......+.++|+|++|+++. 
T Consensus       176 ~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~-~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        176 GPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FS-DTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             CCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CC-CCccceeEEECCCCCEEEEecC
Confidence            45789999999 88777765 8999999997421110111111110000      00 012334688999999999885 


Q ss_pred             -cCeEEEEEccCCCcce---EEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc-CCCC
Q 015290          347 -YMNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-RRDN  408 (409)
Q Consensus       347 -~~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~-dg~i  408 (409)
                       ++.|.+|++...+..+   ..+.....+                ..++++|||++|++++. +++|
T Consensus       248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p----------------~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        248 TASLISVFSVSEDGSVLSFEGHQPTETQP----------------RGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             CCCeEEEEEEeCCCCeEEEeEEEeccccC----------------CceEECCCCCEEEEEEccCCcE
Confidence             3999999997533322   222221112                47999999999997765 5554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=9.8e-18  Score=147.24  Aligned_cols=213  Identities=15%  Similarity=0.179  Sum_probs=150.1

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      +.....|+.+.|+| |...||+++.||.|+||.+..+...                    .+...+-..+.+|.      
T Consensus       624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------------------e~~~tPe~~lt~h~------  677 (1012)
T KOG1445|consen  624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------------------ENEMTPEKILTIHG------  677 (1012)
T ss_pred             cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------------------cccCCcceeeeccc------
Confidence            33567899999999 8889999999999999999876531                    12334556788998      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|+++.|+| -....|++++.|-+|++||+.+.+....                                   
T Consensus       678 ------eKI~slRfHP-LAadvLa~asyd~Ti~lWDl~~~~~~~~-----------------------------------  715 (1012)
T KOG1445|consen  678 ------EKITSLRFHP-LAADVLAVASYDSTIELWDLANAKLYSR-----------------------------------  715 (1012)
T ss_pred             ------ceEEEEEecc-hhhhHhhhhhccceeeeeehhhhhhhhe-----------------------------------
Confidence                  8999999987 4556999999999999999998755432                                   


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                +.+|.+.|..++|+|+|+.+++. .||+|++|+.+...+.+..       -.+-
T Consensus       716 --------------------------l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E-------g~gp  762 (1012)
T KOG1445|consen  716 --------------------------LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE-------GKGP  762 (1012)
T ss_pred             --------------------------eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc-------CCCC
Confidence                                      26899999999999999999998 9999999999855544432       1111


Q ss_pred             -cCceEEEEEeCCCCCEEEEEeCC----CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-
Q 015290          267 -TEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-  340 (409)
Q Consensus       267 -~~~v~~~~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-  340 (409)
                       ...--.+.|.-+| ++++..+.|    ..|.+||..+-....-....+..              ...+.--.+.+|.. 
T Consensus       763 vgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--------------aps~LvP~YD~Ds~~  827 (1012)
T KOG1445|consen  763 VGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--------------APSPLVPHYDYDSNV  827 (1012)
T ss_pred             ccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhccCCcceeeeecc--------------cCccccccccCCCce
Confidence             1222457788888 777776654    46778876553210000011111              11222234455655 


Q ss_pred             EEEEe-ecCeEEEEEccC
Q 015290          341 HLLSR-DYMNLKLWDIRM  357 (409)
Q Consensus       341 ~l~sg-~~~~v~iwd~~~  357 (409)
                      ++++| +|..|.+|.+..
T Consensus       828 lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  828 LFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             EEEecCCCceEEEEEecC
Confidence            45567 579999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=7.7e-17  Score=147.03  Aligned_cols=217  Identities=12%  Similarity=0.097  Sum_probs=145.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..|...+.+++|+|||++||.++.+   ..|.+||+.+++.                         +.+..+.+|.    
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------~~l~~~~g~~----  250 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------KVVASFRGHN----  250 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------------------EEEecCCCcc----
Confidence            4467789999999999999988754   3699999987652                         1233344443    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEE--EcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                                 ..++|  +|||+.|+.++ .++.+.||  |+.++....+                              
T Consensus       251 -----------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------  287 (429)
T PRK01742        251 -----------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------  287 (429)
T ss_pred             -----------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEee------------------------------
Confidence                       35789  89999888764 67876666  4444432221                              


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                                      ..+...+....|+|||+.|+.+  .++...||++...+.....     
T Consensus       288 --------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-----  330 (429)
T PRK01742        288 --------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-----  330 (429)
T ss_pred             --------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----
Confidence                                            2344456788999999987754  6788899987633333332     


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                        + .+..  ....|+|+| ++|+..+.++ +.+||+.+++.     ..+..              ......+.|+|||+
T Consensus       331 --l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~--------------~~~~~~~~~sPdG~  384 (429)
T PRK01742        331 --V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSS--------------TFLDESPSISPNGI  384 (429)
T ss_pred             --e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecC--------------CCCCCCceECCCCC
Confidence              1 2222  457899999 8888877765 55699988653     11111              01234678999999


Q ss_pred             EEEEee-cCeEEEEEcc-CCCcceEEEecccCcccccccccCCCCccceeeEEEcCC
Q 015290          341 HLLSRD-YMNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  395 (409)
Q Consensus       341 ~l~sg~-~~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  395 (409)
                      +|+.++ ++.+.+|.+. .+++....+..|...+               ...+|+|-
T Consensus       385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~  426 (429)
T PRK01742        385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY  426 (429)
T ss_pred             EEEEEEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence            999886 4666666642 2378888888777654               47899984

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=1.6e-18  Score=156.47  Aligned_cols=251  Identities=18%  Similarity=0.243  Sum_probs=174.9

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..++|.++|+|+.|...|.++++|+.|..|+||..++..                           ++..+.||+     
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------~lAs~rGhs-----  232 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------CLASCRGHS-----  232 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------------hhccCCCCc-----
Confidence            345699999999999999999999999999999988776                           578899999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             +.|+.++.  +.+..++++++.|..|++|.+..+..+.+                                  
T Consensus       233 -------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv----------------------------------  269 (1113)
T KOG0644|consen  233 -------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV----------------------------------  269 (1113)
T ss_pred             -------cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH----------------------------------
Confidence                   89999999  67778889999999999999988755433                                  


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                 +.+|.+.|++++|+|-.   .++.||++++||.+ -...+..  -++..+. .
T Consensus       270 ---------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y~--prp~~~~-~  315 (1113)
T KOG0644|consen  270 ---------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIYV--PRPLKFT-E  315 (1113)
T ss_pred             ---------------------------HhccccceeeeccCccc---cCCCCCceEecccc-ccccccC--CCCCCcc-c
Confidence                                       27899999999999965   33399999999988 1111111  0111111 2


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc----------------------ccccccccccccCCccccc
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------SARILRDAAESHGSKSFFT  324 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  324 (409)
                      ...+.++.|...+ .-+++++.|+.-..|.+..-.....                      .++.|+.  ..-.....+.
T Consensus       316 ~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl--~~g~l~H~l~  392 (1113)
T KOG0644|consen  316 KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL--YTGQLLHNLM  392 (1113)
T ss_pred             ccceeeeeccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeec--ccchhhhhhc
Confidence            2456667777776 7777777777766665432110000                      0011111  0000112245


Q ss_pred             ccccceeeeEeccCCCEEE-Eee-cCeEEEEEccCCCcceEEEe-cccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          325 EIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       325 ~~~~~i~~~~~s~~g~~l~-sg~-~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      +|...+..+.++|-...++ +++ ||...|||+.. +.+++.+. +|...                ...+||+||..++.
T Consensus       393 ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl----------------~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  393 GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKL----------------VDGKFSQDGTSIAL  455 (1113)
T ss_pred             ccccceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeeeccccee----------------eccccCCCCceEec
Confidence            6788899999999776555 444 69999999985 77766654 34433                48899999887765


Q ss_pred             cccCC
Q 015290          402 GSYRR  406 (409)
Q Consensus       402 ~s~dg  406 (409)
                      ...-|
T Consensus       456 sd~hg  460 (1113)
T KOG0644|consen  456 SDDHG  460 (1113)
T ss_pred             CCCCC
Confidence            54444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.77  E-value=4.3e-17  Score=137.78  Aligned_cols=249  Identities=13%  Similarity=0.115  Sum_probs=167.6

Q ss_pred             cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ...|..+|.++.|+| +-..+++.+.||+|++-|+++....                         .+..+..-.     
T Consensus       230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-------------------------~v~s~~~d~-----  279 (498)
T KOG4328|consen  230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-------------------------EVLSLDTDN-----  279 (498)
T ss_pred             eccCCccccceEecCCChhheeeeccCceeeeeeecchhhH-------------------------HHhhcCccc-----
Confidence            344899999999999 5567889999999999999876421                         111222122     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ....++.|  +.+...++.+..=|...+||.+.+......                                 
T Consensus       280 -------~~fs~~d~--~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~---------------------------------  317 (498)
T KOG4328|consen  280 -------IWFSSLDF--SAESRSVLFGDNVGNFNVIDLRTDGSEYEN---------------------------------  317 (498)
T ss_pred             -------eeeeeccc--cCCCccEEEeecccceEEEEeecCCccchh---------------------------------
Confidence                   46677788  566667777777778999999876432110                                 


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceee-eeecCCCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNM  263 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~-~~~~~~~~~  263 (409)
                                                 +.-|...|.+|+++|-. .+|+++ .|++.+|||++.-..... .     ...
T Consensus       318 ---------------------------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~-----lst  365 (498)
T KOG4328|consen  318 ---------------------------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF-----LST  365 (498)
T ss_pred             ---------------------------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc-----eec
Confidence                                       14577799999999975 567788 999999999984222111 1     114


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ..|...|.++.|+|.+ -.|++.+.|..|+|||..--........... |...      ..- --......|.|+..+++
T Consensus       366 ~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~------t~R-wlT~fKA~W~P~~~li~  436 (498)
T KOG4328|consen  366 LPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR------TGR-WLTPFKAAWDPDYNLIV  436 (498)
T ss_pred             ccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceee-ccCc------ccc-cccchhheeCCCccEEE
Confidence            5689999999999999 5599999999999999741000000001111 1000      000 11345678999999999


Q ss_pred             Eeec-CeEEEEEccCCCcceEEEecccC-cccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          344 SRDY-MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       344 sg~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      +|.. ..|-|+|-.. ++.+..+..... .++              .-.+|+|-+..+++|+.
T Consensus       437 vg~~~r~IDv~~~~~-~q~v~el~~P~~~tI~--------------~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  437 VGRYPRPIDVFDGNG-GQMVCELHDPESSTIP--------------SVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             EeccCcceeEEcCCC-CEEeeeccCccccccc--------------cceeecccccceeccCC
Confidence            9987 8899999863 676666544333 332              24789998885665543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=9.4e-17  Score=128.19  Aligned_cols=157  Identities=16%  Similarity=0.197  Sum_probs=122.5

Q ss_pred             cccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCce--eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC
Q 015290          215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (409)
Q Consensus       215 ~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg  290 (409)
                      ..+.+++++..|+. +.+++.++ -|-+..|||++ .+..  +++      .+..|...|..++|...+..+||+.+.||
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie-~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDG  219 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE-TGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADG  219 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEe-eccccceee------EEEecCcceeEEEeccCccceEEEecCCC
Confidence            34667899999986 45677777 89999999999 4322  222      26789999999999998778999999999


Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEe-ec-CeEEEEEccCCCcceEEEec
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DY-MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg-~~-~~v~iwd~~~~~~~~~~~~~  367 (409)
                      .+|+||+|..+..   --+++.    |..       ..++..++|++.. +|||+- .+ ..|.|.|++.+..++..+.+
T Consensus       220 SvRmFDLR~leHS---TIIYE~----p~~-------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~  285 (364)
T KOG0290|consen  220 SVRMFDLRSLEHS---TIIYED----PSP-------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN  285 (364)
T ss_pred             cEEEEEecccccc---eEEecC----CCC-------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence            9999999985421   112222    111       3578899999854 788875 35 99999999998899999999


Q ss_pred             ccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCC
Q 015290          368 HEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRD  407 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~  407 (409)
                      |...+               ..++|.|. ...|+||++|..
T Consensus       286 H~a~V---------------NgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  286 HQASV---------------NGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             Ccccc---------------cceEecCCCCceeeecCCcce
Confidence            99987               59999996 567889998864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.2e-16  Score=143.90  Aligned_cols=294  Identities=15%  Similarity=0.106  Sum_probs=190.4

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      .-.|++|+++++.+. +..|+||...+++                           +++.+.+|.            .++
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~---------------------------~i~~l~~~~------------a~l   60 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGE---------------------------CITSLEDHT------------APL   60 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHh---------------------------hhhhccccc------------Ccc
Confidence            446999999988776 4589999999987                           456789999            899


Q ss_pred             EEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          117 NRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       117 ~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      .++.+.|++.. .++++++.||+|++||...+.+.+....+.....................+..+...+...+....++
T Consensus        61 ~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q  140 (792)
T KOG1963|consen   61 TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ  140 (792)
T ss_pred             ceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccc
Confidence            99999775443 57889999999999999999988877665544322221000010011111111112222222212223


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  275 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  275 (409)
                      .+-..+.+...  ....++.++.. -.++.+++.|++.+...+..+.+|+.....+  ...  ....-..|...+++.++
T Consensus       141 ~~~~~~~t~~~--~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~--~~~--~~~~~~~Htf~~t~~~~  213 (792)
T KOG1963|consen  141 SSRFVLATFDS--AKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK--HTS--SRDITVHHTFNITCVAL  213 (792)
T ss_pred             eeeeEeeeccc--cchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccce--eec--cchhhhhhcccceeEEe
Confidence            33333322110  01111123322 4678889989888777777889999883221  111  00112446677899999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD  354 (409)
Q Consensus       276 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd  354 (409)
                      +|++ +++|+|..||.|.+|.--..+.     ..+        ..+.+.-|...|++++|+++|.+|++|+. +.+-+|.
T Consensus       214 spn~-~~~Aa~d~dGrI~vw~d~~~~~-----~~~--------t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  214 SPNE-RYLAAGDSDGRILVWRDFGSSD-----DSE--------TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             cccc-ceEEEeccCCcEEEEecccccc-----ccc--------cceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence            9999 9999999999999996433111     111        11234456789999999999999999986 9999999


Q ss_pred             ccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.+ ++ .+-++.-..++               ..+.+|||+.+.+....|+.|
T Consensus       280 ~~T-~~-kqfLPRLgs~I---------------~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  280 LET-GK-KQFLPRLGSPI---------------LHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             ecC-CC-cccccccCCee---------------EEEEEcCCCCeEEEEecCceE
Confidence            987 33 33333334443               689999999998888888765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.5e-17  Score=134.69  Aligned_cols=259  Identities=13%  Similarity=0.085  Sum_probs=174.0

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.+.|.++.|+.++++||+|+.|..+++|.++....       ++..              +++. +.+|.      
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-------~k~~--------------KPI~-~~~~~------  103 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-------RKTP--------------KPIG-VMEHP------  103 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-------hcCC--------------CCce-eccCc------
Confidence            456999999999999999999999999999999875321       0000              1122 33333      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                          |...|.|++|  ......+++|..+++|...|+.+.+.+.+...                                
T Consensus       104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~--------------------------------  145 (609)
T KOG4227|consen  104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE--------------------------------  145 (609)
T ss_pred             ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc--------------------------------
Confidence                1278999999  67788999999999999999998765443220                                


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                 ....+.|..+..+|..+.|++. .++.|.+||.+........+-     ....
T Consensus       146 ---------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~  193 (609)
T KOG4227|consen  146 ---------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANS  193 (609)
T ss_pred             ---------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCC
Confidence                                       2345689999999999999998 999999999984332433321     1223


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ....+++.|+|..|.+|++.+..+-+.+||.+.....     ++.. ...    ..+......-.++.|+|.|..+.+--
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-----~~~~-~~~----~~L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-----VYQR-SMF----KGLPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccch-----HHhh-hcc----ccCcccchhhhheeeCCCCCeehhhh
Confidence            4567899999999899999999999999999885431     1111 000    00011012346789999998777664


Q ss_pred             c-CeEEEEEccCCCcceEEEec-ccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          347 Y-MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       347 ~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      - ..-.+||+-.  +-+.+++. |....+      .+-|  .+-+++|--|-. +++||.+
T Consensus       264 R~~~P~~~D~~S--~R~~V~k~D~N~~GY------~N~~--T~KS~~F~~D~~-v~tGSD~  313 (609)
T KOG4227|consen  264 RGKCPLYFDFIS--QRCFVLKSDHNPNGY------CNIK--TIKSMTFIDDYT-VATGSDH  313 (609)
T ss_pred             ccCCCEEeeeec--ccceeEeccCCCCcc------eeee--eeeeeeeeccee-eeccCcc
Confidence            3 5666788864  22333332 232111      1111  124788875544 8888876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.8e-17  Score=129.51  Aligned_cols=192  Identities=16%  Similarity=0.233  Sum_probs=143.9

Q ss_pred             eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      ..|+.|  ++.|.+|++|+.||.|-|||+.+....+.                                           
T Consensus        26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------------------------------   60 (405)
T KOG1273|consen   26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM-------------------------------------------   60 (405)
T ss_pred             cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence            778999  79999999999999999999988654332                                           


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  274 (409)
                                        +.+|-.+|.+++|+++|+.|+++ .|..|.+||+. .+.+++.+.        ..++|+.+.
T Consensus        61 ------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~-~gs~l~rir--------f~spv~~~q  113 (405)
T KOG1273|consen   61 ------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL-KGSPLKRIR--------FDSPVWGAQ  113 (405)
T ss_pred             ------------------hhccccceeEEEecCCCCEeeeecCCceeEEEecc-CCCceeEEE--------ccCccceee
Confidence                              26899999999999999999999 99999999999 666666543        347899999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEE
Q 015290          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  353 (409)
Q Consensus       275 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iw  353 (409)
                      |+|...+.++..-.+..-.+-++.....     ..+....++.  .      .....+..|.+.|+|+++|.. |.+.+|
T Consensus       114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~d~d~d--l------n~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  114 WHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPKDDDGD--L------NSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             eccccCCeEEEEEecCCcEEEEecCCce-----eeccCCCccc--c------ccccccccccCCCCEEEEecCcceEEEE
Confidence            9998755555555554455555554321     2222201000  0      112233468999999999976 999999


Q ss_pred             EccCCCcceEEEeccc-CcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          354 DIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       354 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |..+ .+++..++-.. ..+               ..+.++..|++|+.-+.|+.|
T Consensus       181 ~a~t-~e~vas~rits~~~I---------------K~I~~s~~g~~liiNtsDRvI  220 (405)
T KOG1273|consen  181 DAET-LECVASFRITSVQAI---------------KQIIVSRKGRFLIINTSDRVI  220 (405)
T ss_pred             ecch-heeeeeeeechheee---------------eEEEEeccCcEEEEecCCceE
Confidence            9987 68887777554 332               589999999999999998865

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=3.1e-17  Score=136.59  Aligned_cols=211  Identities=19%  Similarity=0.240  Sum_probs=146.3

Q ss_pred             cceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      .+|.++.|.  +++. .|+||+.|..|++|.+..+....-                                        
T Consensus        14 ~pv~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~~----------------------------------------   51 (434)
T KOG1009|consen   14 EPVYSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGGG----------------------------------------   51 (434)
T ss_pred             CceEEEEec--cCcccceecccCccceeeeeeeecCCCCC----------------------------------------
Confidence            489999995  4544 999999999999999876532210                                        


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC------C-----ceeeeeecCC
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------D-----QCFNIVDMKP  260 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~------~-----~~~~~~~~~~  260 (409)
                      +..|..           ... +..|...|+++.|+|+|+.|++| ++|.|.+|-....      .     +....+.   
T Consensus        52 ~~~V~y-----------~s~-Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~---  116 (434)
T KOG1009|consen   52 DMKVEY-----------LSS-LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK---  116 (434)
T ss_pred             ceeEEE-----------eec-ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE---
Confidence            001111           111 37899999999999999999999 9999999986610      1     0000000   


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      ..+.+|...|+.++|+|++ +++++++.|+.+++||+..|++    ...             +.+|...+..++|.|-++
T Consensus       117 k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l----~~~-------------~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  117 KVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL----LAI-------------LDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             EEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee----Eee-------------ccccccccceeecchhhh
Confidence            1257799999999999999 9999999999999999999875    233             345678999999999999


Q ss_pred             EEEEee-cCeEEEEEccCCCcceEEEe--------cccCcccccccccCCCC---ccceeeEEEcCCCCeEEEcc
Q 015290          341 HLLSRD-YMNLKLWDIRMDSTPVATFK--------IHEHLRPKLCDLYNNDS---IFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~l~s~s  403 (409)
                      |+++-+ |...+.+++.. .+.+....        +++.. .....+++.+.   .|  +.++|+|||.+|++.+
T Consensus       179 yv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e-~~s~rLfhDeTlksFF--rRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  179 YVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNERE-GKSTRLFHDETLKSFF--RRLSFTPDGSLLVTPA  249 (434)
T ss_pred             hhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCC-cceeeeeecCchhhhh--hhcccCCCCcEEEccc
Confidence            999865 56566666543 22221111        11111 12223444433   34  7899999999998754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=7.1e-17  Score=135.36  Aligned_cols=203  Identities=15%  Similarity=0.172  Sum_probs=139.9

Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (409)
                      .+++|+.+|..||+|+.||.+|||+......                           +.....|.            +.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e  188 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE  188 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence            7899999999999999999999999776542                           33455666            79


Q ss_pred             eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC--ceee-cccccc
Q 015290          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF--AHGY-HLEWTE  192 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~  192 (409)
                      |.++.|  +|||+.|++-+.| ..+||+.+++.......-           ...+..+-.|.+..+.  ..+. .....+
T Consensus       189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~  254 (398)
T KOG0771|consen  189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP-----------FSKDEMFSSCRFSVDNAQETLRLAASQFP  254 (398)
T ss_pred             ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC-----------cccchhhhhceecccCCCceEEEEEecCC
Confidence            999999  8999999999999 899999998843332210           0011111122221111  1221 122223


Q ss_pred             cceeEEEecCCcccceeeeeec-cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          193 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                      .+.++.|++........++... ..-...|++++++++|++++.| .||.|.+++.. .-+.+..+      -+.|...|
T Consensus       255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~V  327 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGFV  327 (398)
T ss_pred             CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheeee
Confidence            4455555554322211111110 1223468999999999999999 99999999998 55555543      46799999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      +.+.|+|+. +++++.+.+.+..+.-+.-
T Consensus       328 T~ltF~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  328 TGLTFSPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEEEcCCc-CcccccccCCceeEEEEee
Confidence            999999998 9999999999988887654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=3.7e-16  Score=142.61  Aligned_cols=184  Identities=14%  Similarity=0.172  Sum_probs=121.5

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+++|  +|||+.|+.++.+   ..|++||+.+++...+..                                    
T Consensus       204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------  245 (429)
T PRK01742        204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------  245 (429)
T ss_pred             CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence            68999999  8999999887654   369999988765433211                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEE--EccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lw--d~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                            + .++   ...++|+|||+.|+.+  .+|.+.||  |+. .+.. ..       +..+
T Consensus       246 ----------------------~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~-~~-------lt~~  290 (429)
T PRK01742        246 ----------------------F-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTP-SQ-------LTSG  290 (429)
T ss_pred             ----------------------C-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCe-Ee-------eccC
Confidence                                  0 222   2357999999988875  57766665  554 3332 22       3445


Q ss_pred             cCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          267 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ...+.+..|+|+| +.|+.. ..+|...||++......   ...+..              ..  ....|+|||++|+..
T Consensus       291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~---~~~l~~--------------~~--~~~~~SpDG~~ia~~  350 (429)
T PRK01742        291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGG---ASLVGG--------------RG--YSAQISADGKTLVMI  350 (429)
T ss_pred             CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC---eEEecC--------------CC--CCccCCCCCCEEEEE
Confidence            5667899999999 766554 46788888886542211   111111              12  357899999999887


Q ss_pred             ecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +...+.+||+.+ ++..........                 ..+.|+|||++|++++.+|.+
T Consensus       351 ~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        351 NGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             cCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCc
Confidence            655567799975 543322222211                 268899999999999888754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.1e-15  Score=125.88  Aligned_cols=259  Identities=13%  Similarity=0.107  Sum_probs=164.5

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .-.+.-++|++--..+|++..|-.|++|+-....                            ...++.-..         
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~sQ---------  140 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVSQ---------  140 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------Cceecchhh---------
Confidence            3467889999855567899999999999976532                            223333221         


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce-eeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                        ..|++++|-| -.++.|+.|+..| |.+|...... ..+...                                    
T Consensus       141 --rnvtclawRP-lsaselavgCr~g-IciW~~s~tln~~r~~~------------------------------------  180 (445)
T KOG2139|consen  141 --RNVTCLAWRP-LSASELAVGCRAG-ICIWSDSRTLNANRNIR------------------------------------  180 (445)
T ss_pred             --cceeEEEecc-CCcceeeeeecce-eEEEEcCcccccccccc------------------------------------
Confidence              5899999964 3445677777755 8999875321 111000                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                +.+....+..+.  .+| .+|++|+|++||..++++  .|..|.|||.. .+..+..       .....+
T Consensus       181 ----------~~s~~~~qvl~~--pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL-------~~~glg  239 (445)
T KOG2139|consen  181 ----------MMSTHHLQVLQD--PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPL-------IPKGLG  239 (445)
T ss_pred             ----------cccccchhheeC--CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCcccc-------cccCCC
Confidence                      000000111121  345 789999999999999987  79999999999 6665544       123346


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~  348 (409)
                      .++-+.|+||+ .+|.++.-|+..++|+......+    ..+..   +          .+.|...+|+|+|++|+-...+
T Consensus       240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~----erw~l---g----------sgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK----ERWIL---G----------SGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             ceeeEEEcCCC-CEEEEecccceeeeehhccccee----cceec---c----------CCceeeeeecCCCCEEEEEEcC
Confidence            78899999999 99999999999999965432211    11111   0          2479999999999998877667


Q ss_pred             eEEEEEccCCCcceEEE-ecccCcccccccccC-------CCCccceeeEEEcCCCCeEEEcccCC
Q 015290          349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYN-------NDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      .-++|.+...+++.... .+....+....++.+       .-+.-.+-+++|.|.|.+||+.-..+
T Consensus       302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            77788776544332221 111111111112111       11112235899999999999764433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=4.4e-15  Score=122.60  Aligned_cols=152  Identities=14%  Similarity=0.171  Sum_probs=114.2

Q ss_pred             ccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe--CCCeEEEE
Q 015290          218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV  295 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw  295 (409)
                      ...|.++.++.  +.|++.-...|+|||++ .-+.+++++    ..+.+...+.++++++.+ .+++.-+  ..|.|.+|
T Consensus        87 pt~IL~VrmNr--~RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             CCceEEEEEcc--ceEEEEEcccEEEEecc-cceeehhhh----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEE
Confidence            34677888764  56777733349999999 666666642    233456667888888877 7888643  46899999


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C-eEEEEEccCCCcceEEEecccCccc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRP  373 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~  373 (409)
                      |..+-+.    ...             +..|.+++.+++|+++|.+||++++ | .|||+.+.. |+.+..|......+ 
T Consensus       159 d~~nl~~----v~~-------------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~-  219 (391)
T KOG2110|consen  159 DTINLQP----VNT-------------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPV-  219 (391)
T ss_pred             Eccccee----eeE-------------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceee-
Confidence            9877432    122             3456899999999999999999998 5 579999975 88888887655543 


Q ss_pred             ccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                                  .|.+++|+||+++|++.|..++|
T Consensus       220 ------------~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  220 ------------SIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             ------------EEEEEEECCCCCeEEEecCCCeE
Confidence                        23699999999999999988876

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=4.6e-15  Score=139.86  Aligned_cols=290  Identities=13%  Similarity=0.097  Sum_probs=175.2

Q ss_pred             cccceeeehhccCCCCCccccCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCC
Q 015290           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (409)
Q Consensus        10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (409)
                      ++..|+....+-.    ....|...|..++.++.. .++++||.||+|++|+.......             +       
T Consensus      1030 p~~gW~p~G~lVA----hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~------- 1085 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVA----HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G------- 1085 (1431)
T ss_pred             CCCCCCccceEee----hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c-------
Confidence            4445777665432    344588899999988755 99999999999999998754320             0       


Q ss_pred             CceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc
Q 015290           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (409)
Q Consensus        89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (409)
                      ..++...++.--.            .++.++..+  +.++.+|.++.||.|++.+++...........     .-.....
T Consensus      1086 ~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~-----~ri~n~~ 1146 (1431)
T KOG1240|consen 1086 GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ-----VRIPNLK 1146 (1431)
T ss_pred             ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeee-----eeccccc
Confidence            0112222222112            688889886  68889999999999999998763211111000     0001112


Q ss_pred             cccCceeccCC--CCCc-eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEE
Q 015290          169 AEKNFMNEHNP--PSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (409)
Q Consensus       169 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lw  244 (409)
                      ..+.++++...  .... .+..+..  .+.+..||+........++.  ....+.|++++.+|.+.++++| ..|.+.+|
T Consensus      1147 ~~g~vv~m~a~~~~~~S~~lvy~T~--~~~iv~~D~r~~~~~w~lk~--~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATD--LSRIVSWDTRMRHDAWRLKN--QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred             CCCceEEeecccccccceeEEEEEe--ccceEEecchhhhhHHhhhc--CccccceeEEEecCCceEEEEecCCceEEEE
Confidence            23334443321  1122 3333332  66889999987665555553  3345789999999999999999 99999999


Q ss_pred             EccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC--CEEEEEe--CCCeEEEEeCCCccccccccccccccccccCCc
Q 015290          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (409)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  320 (409)
                      |++ -+..+..+      -.++..+++.+..+|-.+  ...++++  ..+.|.+|++.++. +..   .+......+...
T Consensus      1223 DLR-F~~~i~sw------~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-~~~---vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1223 DLR-FRVPILSW------EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-RQT---VLWASDGAPILS 1291 (1431)
T ss_pred             Eee-cCceeecc------cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-ceE---EEEcCCCCcchh
Confidence            999 55566554      233457788888777653  4555444  47889999999873 321   111100111110


Q ss_pred             cc------ccccccceeeeEeccCCCEEEEe-ecCeEEEEEccC
Q 015290          321 SF------FTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM  357 (409)
Q Consensus       321 ~~------~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~  357 (409)
                      ..      -+.+.-......+...+.++.+| +|..|+.||...
T Consensus      1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            00      01122223333444444566666 579999999864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.3e-15  Score=129.39  Aligned_cols=284  Identities=15%  Similarity=0.195  Sum_probs=187.7

Q ss_pred             CccccCCCcEEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      +..+.+...-+.|..+|||+|+ |+|...-.|++||+.+..+                             .|.-|..  
T Consensus        45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlD--   93 (703)
T KOG2321|consen   45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLD--   93 (703)
T ss_pred             HHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeeccc--
Confidence            3445588899999999999986 6777888999999987653                             2444431  


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               ..+..+... +.|-..++.-..|++|.+..-.+........              .  .......+...+-
T Consensus        94 ---------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~hy~~RIP--------------~--~GRDm~y~~~scD  147 (703)
T KOG2321|consen   94 ---------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP--------------K--FGRDMKYHKPSCD  147 (703)
T ss_pred             ---------ccceeEEEe-ccchhhheEeecCceeeehhhcCeeeeeecC--------------c--CCccccccCCCcc
Confidence                     344444443 4555566666778888765443322211100              0  0011111111222


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      ++.++.  ...|.-.+++.+.   -+.-| ....+.++++..++-..+|++| .+|.|..||.+ .+....+++.... .
T Consensus       148 ly~~gs--g~evYRlNLEqGr---fL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v  219 (703)
T KOG2321|consen  148 LYLVGS--GSEVYRLNLEQGR---FLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-V  219 (703)
T ss_pred             EEEeec--CcceEEEEccccc---ccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-c
Confidence            222221  3356666665532   22222 3455789999999999999999 89999999999 6665655554422 2


Q ss_pred             cCccC-----ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290          264 DDLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (409)
Q Consensus       264 ~~~~~-----~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  338 (409)
                      ..|.+     .|+++.|+.+| -.++.|..+|.+.|||++..++.     ....|           +..-+|..+.|-+.
T Consensus       220 ~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl-----~~kdh-----------~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  220 NSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPL-----LVKDH-----------GYELPIKKLDWQDT  282 (703)
T ss_pred             CCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCce-----eeccc-----------CCccceeeeccccc
Confidence            33333     49999999998 99999999999999999997642     22221           11347889999775


Q ss_pred             --CCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          339 --GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       339 --g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                        +..|++.....++|||-.+ |++...+......                ..+|+-|++.+++++-+++.+
T Consensus       283 ~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  283 DQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             CCCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcc
Confidence              4566666669999999886 8888777655543                489999999999998877654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=2.4e-14  Score=131.74  Aligned_cols=239  Identities=26%  Similarity=0.434  Sum_probs=174.6

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ...|...|.++.|.+.+..++.++.|+.+.+|+......                          .+..+.++..     
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~-----  109 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD-----  109 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence            345899999999999999999999999999999887641                          2344444330     


Q ss_pred             ccceeccceEEEEEEecCCCC-EEEEEeC-CCeEEEEEcCC-ceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                            ..+..+.+. ++++. .++..+. |+.+++|+... ......                                
T Consensus       110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------------------  150 (466)
T COG2319         110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--------------------------------  150 (466)
T ss_pred             ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------------------------
Confidence                  256777774 46776 4555444 99999999986 222111                                


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-CCeEEEEEccCCCceeeeeecCCCc
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                                                   +..|...|..++|+|+++.++++ . |+.+++|+.. ....+..       
T Consensus       151 -----------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------  193 (466)
T COG2319         151 -----------------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLST-------  193 (466)
T ss_pred             -----------------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEe-------
Confidence                                         15788889999999999988887 5 9999999998 4455554       


Q ss_pred             CcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeCCCccccccccc-cccccccccCCcccccccccceeeeEeccCCC
Q 015290          263 MDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      +.+|...+.+++|+|++ . ++++++.|+.|++||...+...    . .+..             |.... -..|+|++.
T Consensus       194 ~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~----~~~~~~-------------~~~~~-~~~~~~~~~  254 (466)
T COG2319         194 LAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLL----RSTLSG-------------HSDSV-VSSFSPDGS  254 (466)
T ss_pred             eccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEE----eeecCC-------------CCcce-eEeECCCCC
Confidence            56689999999999998 6 5666699999999988754431    2 2222             23333 228999998


Q ss_pred             EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ++++++ ++.+++|++......+..+.+|...+               .++.|+|++..+++++.|+.
T Consensus       255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~  307 (466)
T COG2319         255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGT  307 (466)
T ss_pred             EEEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCc
Confidence            888776 49999999985333244444554443               58899999999988888854

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.4e-15  Score=139.64  Aligned_cols=263  Identities=15%  Similarity=0.180  Sum_probs=172.8

Q ss_pred             CCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCc-CCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGK-NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        32 ~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ...|+.+.+-.  |..++++|+.||.|+||+-.... .                       ..++++.+.+-+..   +.
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~-----------------------~~eLVTaw~~Ls~~---~~ 1162 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK-----------------------KPELVTAWSSLSDQ---LP 1162 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccC-----------------------CceeEEeecccccc---Cc
Confidence            46899999876  56789999999999999743221 1                       12234433322200   00


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      .-.  +.=.-+.|  .....+|++++.-+.|+|||.................+.+++-....           +.+++.|
T Consensus      1163 ~~r--~~~~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-----------gn~i~AG 1227 (1387)
T KOG1517|consen 1163 GAR--GTGLVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-----------GNIIAAG 1227 (1387)
T ss_pred             cCC--CCCeeeeh--hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-----------CceEEEe
Confidence            000  11134578  45555777777689999999988776655544433333333322222           2333333


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccc--eeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      -.  ||.+++||.........+..+ +.|...  |..+.+.+.|- .|++| .+|.|++||++.. .....+.     ..
T Consensus      1228 fa--DGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~-----iv 1298 (1387)
T KOG1517|consen 1228 FA--DGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLT-----IV 1298 (1387)
T ss_pred             ec--CCceEEeecccCCccccceee-cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccce-----ee
Confidence            33  999999999987776677776 788887  99999988764 48899 9999999999942 2222211     12


Q ss_pred             Cc---cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          265 DL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       265 ~~---~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      .|   .+..+++..+++. .++|+|+. +.|+||++...++     ..+..+      ..++....+.+.+++|+|---+
T Consensus      1299 ~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l-----~~~k~n------~~F~~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQL-----NIIKYN------PGFMGQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred             eccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhh-----cccccC------cccccCcCCCcceeeecchhHh
Confidence            22   2258999999998 99999998 9999999987653     222221      1111222456799999999888


Q ss_pred             EEEee-cCeEEEEEccC
Q 015290          342 LLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       342 l~sg~-~~~v~iwd~~~  357 (409)
                      +|+|+ |..|.||....
T Consensus      1366 lAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1366 LAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             hhhccCCceEEEeecCC
Confidence            88887 49999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=9.1e-15  Score=133.14  Aligned_cols=215  Identities=12%  Similarity=0.105  Sum_probs=139.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .+...+.+.+|+|||+.||..+.   +..|.+|++.+++.                         +.+..+.+       
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-------------------------~~l~~~~~-------  243 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-------------------------RQVASFPR-------  243 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------EEccCCCC-------
Confidence            35668999999999999987642   34788999887652                         12222333       


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEE-eCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                              .+..+.|  +|||+.|+.. +.++  .|.+||+.+++....                               
T Consensus       244 --------~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-------------------------------  282 (429)
T PRK03629        244 --------HNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-------------------------------  282 (429)
T ss_pred             --------CcCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-------------------------------
Confidence                    3345789  8999988865 4444  578888877654332                               


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEE--EccCCCceeeeeecC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMK  259 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lw--d~~~~~~~~~~~~~~  259 (409)
                                                     ..+...+....|+|+|+.|+..  .++...||  |+. .+.. ..    
T Consensus       283 -------------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~-~~----  325 (429)
T PRK03629        283 -------------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAP-QR----  325 (429)
T ss_pred             -------------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCe-EE----
Confidence                                           1222345678999999988765  44555555  554 3332 22    


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                         +...........|+|+| ++|+..+.+   ..|.+||+.+++.     ..+..              ........|+
T Consensus       326 ---lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~--------------~~~~~~p~~S  382 (429)
T PRK03629        326 ---ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTD--------------TFLDETPSIA  382 (429)
T ss_pred             ---eecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCC--------------CCCCCCceEC
Confidence               12223345678999999 877765543   3588899887653     22222              1123467899


Q ss_pred             cCCCEEEEee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC
Q 015290          337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (409)
Q Consensus       337 ~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  394 (409)
                      |||++|+.++ +   ..+.++++.  +.....+.+|...+               ...+|+|
T Consensus       383 pDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~~---------------~~p~Wsp  427 (429)
T PRK03629        383 PNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV---------------KFPAWSP  427 (429)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCCc---------------CCcccCC
Confidence            9999998775 3   347788875  77777777766654               4788887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=6e-16  Score=136.99  Aligned_cols=239  Identities=13%  Similarity=0.089  Sum_probs=174.8

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|++.|.|++|+.||+.+|+|+.|..|.+|..+-...                             ---.|.      
T Consensus        49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-----------------------------LkYSH~------   93 (1081)
T KOG1538|consen   49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-----------------------------LKYSHN------   93 (1081)
T ss_pred             cccccceEEEEEEccCCceeccCCCceeEEEecccccce-----------------------------eeeccC------
Confidence            344999999999999999999999999999998653221                             013455      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|.|+.|  +|-.+.|++|+... .-+|........+.               .....+..|.|..++++++.
T Consensus        94 ------D~IQCMsF--NP~~h~LasCsLsd-FglWS~~qK~V~K~---------------kss~R~~~CsWtnDGqylal  149 (1081)
T KOG1538|consen   94 ------DAIQCMSF--NPITHQLASCSLSD-FGLWSPEQKSVSKH---------------KSSSRIICCSWTNDGQYLAL  149 (1081)
T ss_pred             ------CeeeEeec--CchHHHhhhcchhh-ccccChhhhhHHhh---------------hhheeEEEeeecCCCcEEEE
Confidence                  89999999  68888999987643 66887765543322               23345677888899999998


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-----CeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-----ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      |-+  +|+|.+.+..........+ . .+...+|.+++|+|..     ..++.. ...++.+|.+.  ++.+..      
T Consensus       150 G~~--nGTIsiRNk~gEek~~I~R-p-gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk------  217 (1081)
T KOG1538|consen  150 GMF--NGTISIRNKNGEEKVKIER-P-GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGK------  217 (1081)
T ss_pred             ecc--CceEEeecCCCCcceEEeC-C-CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecc------
Confidence            887  8888888655433222222 2 5678899999999862     466667 78888888887  444321      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                       -....-...++++.|+| .+++.|+.|+.+++|-...-.+     .++             ...+.+|+.++..|++++
T Consensus       218 -~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~GvrL-----GTv-------------g~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  218 -DRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGVRL-----GTV-------------GEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             -cccCCCCchhheeccCC-cEEEEccCCCceEEEeecCeEE-----eec-------------cccceeEEEEEEccCCce
Confidence             12223345789999999 9999999999999996543211     111             112569999999999999


Q ss_pred             EEEee-cCeEEEEEccC
Q 015290          342 LLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       342 l~sg~-~~~v~iwd~~~  357 (409)
                      ++.|. ||+|..|++-.
T Consensus       278 v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  278 VVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEEccCeeehhhhHH
Confidence            99997 59999998753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=4.5e-14  Score=114.51  Aligned_cols=140  Identities=15%  Similarity=0.169  Sum_probs=97.4

Q ss_pred             cceeEEEecCCcccce-eeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCce-eeeeecCCCcCcCccC
Q 015290          193 NMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTE  268 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~  268 (409)
                      .+.|.+|......... ++.+  ........++.-+.+...||. | .-|.|.|-|+...... -..       +..|.+
T Consensus       112 ~~~I~VytF~~n~k~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~-------I~AH~s  182 (346)
T KOG2111|consen  112 ENKIYVYTFPDNPKLLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI-------INAHDS  182 (346)
T ss_pred             cCeEEEEEcCCChhheeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE-------EEcccC
Confidence            4567788776432211 1111  122233444443334445554 6 7899999999843331 122       688999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      .|.+++.+-+| .++||+|..|+ |||||..++...    ..++. .          ...+.|.+++|||++.+||+++|
T Consensus       183 ~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RR-G----------~d~A~iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  183 DIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRR-G----------VDRADIYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             ceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeec-C----------CchheEEEEEeCCCccEEEEEcC
Confidence            99999999999 99999999997 899999998752    33333 0          11358999999999999999999


Q ss_pred             -CeEEEEEccC
Q 015290          348 -MNLKLWDIRM  357 (409)
Q Consensus       348 -~~v~iwd~~~  357 (409)
                       |+|.|+.++.
T Consensus       247 KgTlHiF~l~~  257 (346)
T KOG2111|consen  247 KGTLHIFSLRD  257 (346)
T ss_pred             CCeEEEEEeec
Confidence             9999999873

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.6e-14  Score=131.92  Aligned_cols=268  Identities=12%  Similarity=0.172  Sum_probs=159.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|.-.+++.++||+++++|+|..||.|.+|.--..+.                       .-...+.+.-|.       
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~-------  251 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH-------  251 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc-------
Confidence            44777899999999999999999999999997443110                       011345677887       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  +++|.+|++|+..+.+-+|.+.+++.+....+.              +.+..+..++++......
T Consensus       252 -----~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg--------------s~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  252 -----DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG--------------SPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             -----cccceeEE--ecCCceEeecccceEEEEEeecCCCcccccccC--------------CeeEEEEEcCCCCeEEEE
Confidence                 79999999  899999999999999999999998844332221              122222222222222111


Q ss_pred             cccccceeEEEecCCcccceeeeee-------ccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecC-
Q 015290          189 EWTENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-  259 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-  259 (409)
                      -  .|+.|.+-.+.+......+..+       -...++-.+.++++|.-+.++-. ..|.|.+||+.+.. .+..+.+- 
T Consensus       311 ~--~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~-~i~~~~v~~  387 (792)
T KOG1963|consen  311 L--EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS-TIYKLQVCD  387 (792)
T ss_pred             e--cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc-eeeeEEEEe
Confidence            1  1555555544321111111111       01123444556666643333333 56666666654211 11110000 


Q ss_pred             ------------------------------------------------------------CCcCcCccCceEEEEEeC-C
Q 015290          260 ------------------------------------------------------------PSNMDDLTEVITSAEFHP-I  278 (409)
Q Consensus       260 ------------------------------------------------------------~~~~~~~~~~v~~~~~~p-~  278 (409)
                                                                                  ..-...|...+...++.+ .
T Consensus       388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~  467 (792)
T KOG1963|consen  388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT  467 (792)
T ss_pred             ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence                                                                        000123554444444443 2


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290          279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       279 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~  357 (409)
                      ....+++++.||.+++|-+...+........|.++..+     .  -|..++++++|+.||..|+.+-++.|.+||..+
T Consensus       468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-----s--y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-----S--YHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-----c--cccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence            21378899999999999885543222222333332111     1  256789999999999999999999999999975

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=3.1e-14  Score=129.43  Aligned_cols=251  Identities=12%  Similarity=0.093  Sum_probs=155.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC--Cceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  191 (409)
                      ..|.++.|+| -+..+++.|..+|.|-+||+..+.......       .+.........+..+.+..+  ..-+++++. 
T Consensus       243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss-  313 (555)
T KOG1587|consen  243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSS-  313 (555)
T ss_pred             CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcc-------cccccccCCcCeEEEEEeccCCCCceEEEec-
Confidence            5899999986 566788999999999999998765432110       11111112222233332211  122333333 


Q ss_pred             ccceeEEEecCCcccce---eeeeec-----cccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCC-
Q 015290          192 ENMATKIANVGNSVHAR---CQKVYP-----HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP-  260 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~---~~~~~~-----~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-  260 (409)
                       ||.|..|+++......   +.....     ......+++++|.+. -..++.| .+|.|.--+......... ...+. 
T Consensus       314 -DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~  391 (555)
T KOG1587|consen  314 -DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGH  391 (555)
T ss_pred             -CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-cccccc
Confidence             9999999887533211   111110     122345788999875 4567778 999887633221111110 00111 


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC-CccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      ..+..|.+.|+++.++|-+++.|++++ |.+++||... ...+    +-.+..             +...+++++|||.-
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----l~~~~~-------------~~~~v~~vaWSptr  453 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----LLSLDS-------------SPDYVTDVAWSPTR  453 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----chhhhh-------------ccceeeeeEEcCcC
Confidence            135678899999999999967777776 9999999876 3221    122222             24569999999986


Q ss_pred             C-EEEEee-cCeEEEEEccCC-CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          340 Q-HLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~-~l~sg~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      . .++++. +|.|.+||+... ..++...+.+....               ..+.|+++|+.|++|...|++
T Consensus       454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd~~G~~  510 (555)
T KOG1587|consen  454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGDANGTT  510 (555)
T ss_pred             ceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEecCCCcE
Confidence            4 555665 499999999742 24455554443332               589999999999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=3.5e-13  Score=123.95  Aligned_cols=279  Identities=19%  Similarity=0.328  Sum_probs=189.2

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEec-CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ...|...|.+++|+|+++++++++. |+.+++|+.....                           .+..+.+|.     
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~-----  198 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLSTLAGHT-----  198 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEEeeccCC-----
Confidence            3448899999999999999998885 9999999998744                           355677788     


Q ss_pred             cccceeccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeee-eeccCCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                             ..|.+++|  +|++. .+++++.|+.|++||...+.... ....+...            . +. .+.+.+.+
T Consensus       199 -------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~------------~-~~-~~~~~~~~  255 (466)
T COG2319         199 -------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS------------V-VS-SFSPDGSL  255 (466)
T ss_pred             -------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc------------e-eE-eECCCCCE
Confidence                   89999999  57887 55555999999999887555544 22211111            0 11 22333333


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      +..  ...++.+++|++.....  ....+ ..|...+.++.|+|++..++++ .|+.+.+|+.. .........     .
T Consensus       256 ~~~--~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~-----~  324 (466)
T COG2319         256 LAS--GSSDGTIRLWDLRSSSS--LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLT-----L  324 (466)
T ss_pred             EEE--ecCCCcEEEeeecCCCc--EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC-CCceEEEee-----e
Confidence            332  23488999999986544  23333 5788999999999988888888 77889999888 444333321     2


Q ss_pred             cCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      ..|...+..+.|.+++ ..++.+ ..|+.+.+|+......    ......              ...+..+.+++ ...+
T Consensus       325 ~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~-~~~~  384 (466)
T COG2319         325 KGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKP----LKTLEG--------------HSNVLSVSFSP-DGRV  384 (466)
T ss_pred             cccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCce----eEEecC--------------CceEEEEEECC-CCCE
Confidence            3566678999994332 344444 6889999999887541    111111              11278888888 5444


Q ss_pred             EE-ee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          343 LS-RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       343 ~s-g~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .. +. ++.+.+|+... .........+...+               ....+++++..+++++.++++
T Consensus       385 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  436 (466)
T COG2319         385 VSSGSTDGTVRLWDLST-GSLLRNLDGHTSRV---------------TSLDFSPDGKSLASGSSDNTI  436 (466)
T ss_pred             EEEecCCCceEEEeccc-CeeeeeccCCCCcE---------------EEEEECCCCcEEEEecCCCcE
Confidence            44 44 49999999985 44444444432221               588999999999887777654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=2.2e-13  Score=120.62  Aligned_cols=260  Identities=9%  Similarity=0.121  Sum_probs=152.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEe-cCCeEEEEeccC-CcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      +.+.+....++++|++++|++++ .++.|.+|+++. +..                         ....... ..     
T Consensus        31 ~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------------~~~~~~~-~~-----   79 (330)
T PRK11028         31 VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------------TFAAESP-LP-----   79 (330)
T ss_pred             EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------------EEeeeec-CC-----
Confidence            33446678899999999987764 578899999873 221                         0111111 11     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCCce-eeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                             +....+.|  +|++++|++++ .++.|.+|++.+.. .......           .........+..++++.+
T Consensus        80 -------~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~p~g~~  139 (330)
T PRK11028         80 -------GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-----------IEGLEGCHSANIDPDNRT  139 (330)
T ss_pred             -------CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-----------ccCCCcccEeEeCCCCCE
Confidence                   34567889  79999888875 48899999996432 1111100           000011122223445555


Q ss_pred             eecccccccceeEEEecCCccccee--eeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCC-Cc--eeeeee
Q 015290          185 GYHLEWTENMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEIS-DQ--CFNIVD  257 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~-~~--~~~~~~  257 (409)
                      ++.... .++.|.+||++.......  ..............++|+|++++++++  .++.|.+|++... +.  .+..+.
T Consensus       140 l~v~~~-~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        140 LWVPCL-KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             EEEeeC-CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            443322 367899999975221111  000001122346789999999999887  4999999999732 22  222221


Q ss_pred             cCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                      .-+.... +......+.++|++ ++++++. .++.|.+|++...............              ......+.++
T Consensus       219 ~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--------------~~~p~~~~~~  282 (330)
T PRK11028        219 MMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--------------ETQPRGFNID  282 (330)
T ss_pred             cCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--------------cccCCceEEC
Confidence            1111111 12234568999999 8777775 4789999998653211111111111              1235678999


Q ss_pred             cCCCEEEEee--cCeEEEEEcc
Q 015290          337 NDGQHLLSRD--YMNLKLWDIR  356 (409)
Q Consensus       337 ~~g~~l~sg~--~~~v~iwd~~  356 (409)
                      |||++|+++.  +++|.+|+++
T Consensus       283 ~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        283 HSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCCEEEEEEccCCcEEEEEEc
Confidence            9999999875  3999999885

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4.7e-15  Score=121.18  Aligned_cols=258  Identities=8%  Similarity=0.042  Sum_probs=157.4

Q ss_pred             ccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        29 ~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+...++.+.|..  ....+.+|+.||+|++||+......                         ....+.+|..    
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------------------------a~~~~~~~~~----  117 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------------------------ARISWTQQSG----  117 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------------------hheeccCCCC----
Confidence            34677788888877  4567899999999999999876541                         1223334431    


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEE----eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILS----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                             .+-.+++-  +-.++.++++    ..|..+.+||++..+.                                 
T Consensus       118 -------~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---------------------------------  155 (376)
T KOG1188|consen  118 -------TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ---------------------------------  155 (376)
T ss_pred             -------CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc---------------------------------
Confidence                   34555555  3455566665    2456677777765432                                 


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                                .++.+...|.+.|+++.|+|+ .+.|++| .||-|.+||+....+.-..     
T Consensus       156 --------------------------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----  204 (376)
T KOG1188|consen  156 --------------------------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----  204 (376)
T ss_pred             --------------------------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----
Confidence                                      123334789999999999996 4788899 9999999999843221111     


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccc-cCCcccccccccceeeeEeccCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      ...-.|...|..+.|...+-+.+.+-+..+...+|++..+...    ..++. +.- ..... -......+...-...++
T Consensus       205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~-~~~~~~d~r-~~~~~dY~I~~~~~~~~  278 (376)
T KOG1188|consen  205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE----TWLEN-PDVSADDLR-KEDNCDYVINEHSPGDK  278 (376)
T ss_pred             HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh----hcccC-ccchhhhHH-hhhhhhheeecccCCCc
Confidence            0123466789999999876567888999999999999887631    11111 000 00000 00001112111112233


Q ss_pred             CEEE-Eeec-CeEEEEEcc---C--CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          340 QHLL-SRDY-MNLKLWDIR---M--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~~l~-sg~~-~~v~iwd~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ...+ .|++ +...++-+.   +  ..+.+..+.++...+              |+++.|...+.++.||++||.+
T Consensus       279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei--------------VR~i~~~~~~~~l~TGGEDG~l  340 (376)
T KOG1188|consen  279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI--------------VRDILFDVKNDVLYTGGEDGLL  340 (376)
T ss_pred             ceEEEeccccCceeEEEeeecccccccCccccccCCcHHH--------------HHHHhhhcccceeeccCCCceE
Confidence            4444 4444 554444332   1  134555666644333              2688888889999999999975

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3e-14  Score=129.92  Aligned_cols=210  Identities=15%  Similarity=0.156  Sum_probs=133.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..+...+.+.+|+|||+.||..+.+   ..|.+||+.+++.                            ..+....    
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~----------------------------~~l~~~~----  239 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR----------------------------RVVANFK----  239 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE----------------------------EEeecCC----
Confidence            3567889999999999999887743   3599999987753                            1122222    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEE-EEeCCCeEEEEEcC--CceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                              +.+....|  +|||+.|+ +.+.++...||.++  ++....+                              
T Consensus       240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------  279 (427)
T PRK02889        240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRL------------------------------  279 (427)
T ss_pred             --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEEC------------------------------
Confidence                    34567899  89999887 45777776776543  3322111                              


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                                      ..+........|+|||+.|+..  .++...+|.+...+.....+.   
T Consensus       280 --------------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt---  324 (427)
T PRK02889        280 --------------------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT---  324 (427)
T ss_pred             --------------------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---
Confidence                                            2233334567899999988765  456777776642222222210   


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  337 (409)
                        ..  .......+|+|+| ++++..+.++   .|.+||+.+++.     +.+..              ........|+|
T Consensus       325 --~~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~--------------~~~~~~p~~sp  380 (427)
T PRK02889        325 --FT--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTD--------------TTRDESPSFAP  380 (427)
T ss_pred             --cC--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccC--------------CCCccCceECC
Confidence              12  2233467899999 8888776554   699999987653     22222              11235689999


Q ss_pred             CCCEEEEee-c-C--eEEEEEccCCCcceEEEecccCc
Q 015290          338 DGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       338 ~g~~l~sg~-~-~--~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      ||++|+..+ + +  .+.+.++.  +.....+..+.+.
T Consensus       381 dg~~l~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~g~  416 (427)
T PRK02889        381 NGRYILYATQQGGRSVLAAVSSD--GRIKQRLSVQGGD  416 (427)
T ss_pred             CCCEEEEEEecCCCEEEEEEECC--CCceEEeecCCCC
Confidence            999988765 3 3  35555653  6666666655443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2.9e-15  Score=130.17  Aligned_cols=226  Identities=13%  Similarity=0.154  Sum_probs=149.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce---eeeeeecCCCccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY---RYKTEFQSHEPEFDY  106 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~~~  106 (409)
                      .|.++|.|+++.++++.+.+|+-||+|+.|++.....                    .+..|   .....+.||.     
T Consensus       342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d--------------------p~ds~dp~vl~~~l~Ght-----  396 (577)
T KOG0642|consen  342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD--------------------PDDSYDPSVLSGTLLGHT-----  396 (577)
T ss_pred             cccCceEEEEecCCceEEEeeccCceeeeeccCCCCC--------------------cccccCcchhccceeccc-----
Confidence            3999999999999999999999999999998762221                    11122   3446788999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             +.|+.+++  ++....|++|+.||++++|+...... ..+..                               
T Consensus       397 -------davw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~-------------------------------  435 (577)
T KOG0642|consen  397 -------DAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE-------------------------------  435 (577)
T ss_pred             -------cceeeeee--cccccceeeecCCceEEeeccCCcCc-cccCC-------------------------------
Confidence                   89999999  57777899999999999999876544 11110                               


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                  ....+...++.+-... ..+++. .-+.-.++++. ....+.++........
T Consensus       436 ----------------------------~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e-v~s~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  436 ----------------------------PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME-VVSDLLIFESSASPGP  486 (577)
T ss_pred             ----------------------------ccccCCcceEeeccchhHhhhhhcccccccchhhh-hhhheeeccccCCCcc
Confidence                                        0111222344443222 112222 33333333433 2222222211111111


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      .-...+.-+.++|.+ .+.+++..|+.|+++|..++++.    ....             .|...++++++.|+|-+|++
T Consensus       487 ~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l----~s~~-------------a~~~svtslai~~ng~~l~s  548 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKIL----HSMV-------------AHKDSVTSLAIDPNGPYLMS  548 (577)
T ss_pred             cccCccceEEecCCC-CeeEecccCCceecccccccccc----hhee-------------eccceecceeecCCCceEEe
Confidence            122456788899998 89999999999999999988752    2222             23568999999999999999


Q ss_pred             ee-cCeEEEEEccCCCcceEEEeccc
Q 015290          345 RD-YMNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       345 g~-~~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      |+ |+.+++|.+.. ..++.....|.
T Consensus       549 ~s~d~sv~l~kld~-k~~~~es~~~r  573 (577)
T KOG0642|consen  549 GSHDGSVRLWKLDV-KTCVLESTAHR  573 (577)
T ss_pred             ecCCceeehhhccc-hheeecccccc
Confidence            97 59999999974 56655555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.7e-14  Score=130.67  Aligned_cols=207  Identities=13%  Similarity=0.090  Sum_probs=132.2

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..+...+.+.+|+|||+.||..+.+   ..|.+|++.+++.                            ..+....    
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------~~l~~~~----  247 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------ELVASFR----  247 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------------EEeccCC----
Confidence            3466789999999999999988743   4699999987652                            1122222    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEE-EEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                              +...+++|  +|||+.|+ +.+.++  .|.+||+.+++...+                              
T Consensus       248 --------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------------------------------  287 (433)
T PRK04922        248 --------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------------------------------  287 (433)
T ss_pred             --------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------------------------------
Confidence                    34456889  89998776 445555  588888877654332                              


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeec
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDM  258 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~  258 (409)
                                                      ..+.......+|+|||+.|+.+  .++.  |+++|+. .+.....   
T Consensus       288 --------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~l---  331 (433)
T PRK04922        288 --------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERL---  331 (433)
T ss_pred             --------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEe---
Confidence                                            1222334567999999988865  4554  5556665 3333222   


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                           ..+......++|+|+| ++++..+.++   .|.+||+.+++.     ..+..              ........|
T Consensus       332 -----t~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~--------------~~~~~~p~~  386 (433)
T PRK04922        332 -----TFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTP--------------GSLDESPSF  386 (433)
T ss_pred             -----ecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCC--------------CCCCCCceE
Confidence                 1122334578999999 8777665433   689999987653     22222              112345789


Q ss_pred             ccCCCEEEEeec----CeEEEEEccCCCcceEEEecccC
Q 015290          336 ANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       336 s~~g~~l~sg~~----~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                      +|||++|+..++    ..|.++++.  +.....+..+..
T Consensus       387 spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g  423 (433)
T PRK04922        387 APNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG  423 (433)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence            999998876542    467777774  555666654443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=9.7e-15  Score=127.77  Aligned_cols=199  Identities=12%  Similarity=0.129  Sum_probs=150.0

Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      .+...|..+.||  ..|.||++...+   ..|.|+++.....+.-                                   
T Consensus       519 ~~~k~i~~vtWH--rkGDYlatV~~~~~~~~VliHQLSK~~sQ~P-----------------------------------  561 (733)
T KOG0650|consen  519 KHPKSIRQVTWH--RKGDYLATVMPDSGNKSVLIHQLSKRKSQSP-----------------------------------  561 (733)
T ss_pred             ecCCccceeeee--cCCceEEEeccCCCcceEEEEecccccccCc-----------------------------------
Confidence            344899999994  899999997543   5677887765433211                                   


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                                +....+.|.++.|+|...+|+++....|++||+. ....++.       +....
T Consensus       562 --------------------------F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~-kqelvKk-------L~tg~  607 (733)
T KOG0650|consen  562 --------------------------FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS-KQELVKK-------LLTGS  607 (733)
T ss_pred             --------------------------hhhcCCceeEEEecCCCceEEEEeccceEEEehh-HHHHHHH-------HhcCC
Confidence                                      1344567899999999999999977889999998 4544443       44456


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|.+++.+|.| .-|+.|+.|+.+..||+.-+..   ..+.+..             |...+++++|++.-.++++|+|
T Consensus       608 kwiS~msihp~G-Dnli~gs~d~k~~WfDldlssk---Pyk~lr~-------------H~~avr~Va~H~ryPLfas~sd  670 (733)
T KOG0650|consen  608 KWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK---PYKTLRL-------------HEKAVRSVAFHKRYPLFASGSD  670 (733)
T ss_pred             eeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc---hhHHhhh-------------hhhhhhhhhhccccceeeeecC
Confidence            789999999999 7888899999999999876431   1344444             4678999999999999999987


Q ss_pred             -CeEEEEEccC------C--CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 -MNLKLWDIRM------D--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 -~~v~iwd~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +++.|+--.-      +  --++..+.+|....           -++|..+.|+|...+|++++.||+|
T Consensus       671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~-----------~~gVLd~~wHP~qpWLfsAGAd~ti  729 (733)
T KOG0650|consen  671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN-----------DLGVLDTIWHPRQPWLFSAGADGTI  729 (733)
T ss_pred             CCcEEEEeeeeehhhhcCCceEeeeeccCceeec-----------ccceEeecccCCCceEEecCCCceE
Confidence             9998874221      0  13566777887641           2344689999999999999999987

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.5e-15  Score=131.57  Aligned_cols=182  Identities=16%  Similarity=0.223  Sum_probs=131.7

Q ss_pred             eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (409)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (409)
                      -.++.||+            +.|++++|  +.+|.+|++|+.|-.+.|||.-..+....+.                   
T Consensus        43 E~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------   89 (758)
T KOG1310|consen   43 EAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------   89 (758)
T ss_pred             hhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeeeee-------------------
Confidence            35688999            99999999  7999999999999999999987655433322                   


Q ss_pred             eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCC
Q 015290          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD  250 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~  250 (409)
                                                               .+|...|.++.|-|.  .+.+++| .|..|+++|+....
T Consensus        90 -----------------------------------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~  128 (758)
T KOG1310|consen   90 -----------------------------------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK  128 (758)
T ss_pred             -----------------------------------------cccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence                                                     789999999999884  5778888 99999999998321


Q ss_pred             cee--eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          251 QCF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       251 ~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ..-  .-......-+..|...|..++-.|++|+.|-+++.||+|+-+|+|....|....   ..    +.....+.+..-
T Consensus       129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~---~~----~~~l~ny~~~li  201 (758)
T KOG1310|consen  129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE---DC----PSILVNYNPQLI  201 (758)
T ss_pred             ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc---cc----cHHHHHhchhhh
Confidence            100  000011122577889999999999999999999999999999999854332111   00    000000111123


Q ss_pred             ceeeeEeccCC-CEEEEee-cCeEEEEEcc
Q 015290          329 SISDIKFANDG-QHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       329 ~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~  356 (409)
                      ...+++++|.. .+||.|+ +-..++||.+
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            56789999975 5777875 5899999954

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=6.5e-15  Score=125.81  Aligned_cols=307  Identities=13%  Similarity=0.120  Sum_probs=193.7

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ++-.|.+.|..|.|+..|..|++|+.|..|.+||......                          .+.-..||.     
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--------------------------~l~f~SGH~-----  185 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--------------------------KLSFESGHC-----  185 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCc--------------------------ccccccccc-----
Confidence            3445999999999999999999999999999999987764                          233346777     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-eeeeeecc-CCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                             ..|..-.|.|..+..-+++++.||.+++=.+... .+...... .+...+..+          .+.......+
T Consensus       186 -------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkl----------av~p~sp~~f  248 (559)
T KOG1334|consen  186 -------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKL----------AVEPDSPKPF  248 (559)
T ss_pred             -------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCcccee----------eecCCCCCcc
Confidence                   7788888988777788999999999998876533 22212211 111111111          1111111222


Q ss_pred             eecccccccceeEEEecCCcccceeeeeecccccc---ceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCce-----ee
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC-----FN  254 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~-----~~  254 (409)
                      +.++   .|+.+.-.|+...........- ..+..   ....++.+|... .+++| .|..+++||.+.-...     +.
T Consensus       249 ~S~g---eD~~v~~~Dlr~~~pa~~~~cr-~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~  324 (559)
T KOG1334|consen  249 LSCG---EDAVVFHIDLRQDVPAEKFVCR-EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD  324 (559)
T ss_pred             cccc---cccceeeeeeccCCccceeeee-ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence            2222   2566666666554333332211 22333   457888888754 77788 9999999998732111     11


Q ss_pred             eeecCCCc-CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc--cee
Q 015290          255 IVDMKPSN-MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SIS  331 (409)
Q Consensus       255 ~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~  331 (409)
                      .+  -+.. .......|++++|+.++ .-|.+.-.|-.|+++.-..+.- .   .........+.....+++|..  .|-
T Consensus       325 ~f--~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G-~---~p~~~s~~~~~~k~vYKGHrN~~TVK  397 (559)
T KOG1334|consen  325 KF--CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDG-S---EPDPSSPREQYVKRVYKGHRNSRTVK  397 (559)
T ss_pred             hc--CCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccC-C---CCCCCcchhhccchhhcccccccccc
Confidence            11  0000 11223568999999877 4444455677788884332211 0   000000111223334666754  455


Q ss_pred             eeE-eccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          332 DIK-FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       332 ~~~-~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+- |-|...|+++|+| |.|.||+-.+ ++.+..+.+....+               .|+.=+|--..||+++-|..|
T Consensus       398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VV---------------NCLEpHP~~PvLAsSGid~DV  460 (559)
T KOG1334|consen  398 GVNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVV---------------NCLEPHPHLPVLASSGIDHDV  460 (559)
T ss_pred             eeeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceE---------------eccCCCCCCchhhccCCccce
Confidence            555 4688899999999 9999999875 88888888777755               588888888899998887654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.2e-15  Score=124.32  Aligned_cols=202  Identities=18%  Similarity=0.212  Sum_probs=142.8

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +.|++|.|  +.+++.|++|+.|..+++|.+..--..++                                         
T Consensus        57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~-----------------------------------------   93 (609)
T KOG4227|consen   57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT-----------------------------------------   93 (609)
T ss_pred             cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC-----------------------------------------
Confidence            99999999  78899999999999999999864322221                                         


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                                   .+++...-..|...|.|++|.....++++| .+++|.+.|++ +.+.+.++.     -....+.|+.
T Consensus        94 -------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~qsi~V~~-----~~~~~~~VY~  154 (609)
T KOG4227|consen   94 -------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQSIYVAN-----ENNNRGDVYH  154 (609)
T ss_pred             -------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-cceeeeeec-----ccCcccceee
Confidence                         122332224577899999999999999999 99999999999 666666531     1223458999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEeec-CeE
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL  350 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~~-~~v  350 (409)
                      +..+|.. +.|++.+.++.|.+||.+......   ..+-. +          ........+.|+|.. .+|++.+. +.+
T Consensus       155 m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-A----------N~~~~F~t~~F~P~~P~Li~~~~~~~G~  219 (609)
T KOG4227|consen  155 MDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-A----------NSGKNFYTAEFHPETPALILVNSETGGP  219 (609)
T ss_pred             cccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-c----------CCCccceeeeecCCCceeEEeccccCCC
Confidence            9999997 999999999999999998754221   11111 0          112457788999976 56677776 999


Q ss_pred             EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      -+||.+++..++..+.+..+.....     .+.    -++.|+|.|..|.+
T Consensus       220 ~~~D~R~~~~~~~~~~~~~~L~~~~-----~~~----M~~~~~~~G~Q~ms  261 (609)
T KOG4227|consen  220 NVFDRRMQARPVYQRSMFKGLPQEN-----TEW----MGSLWSPSGNQFMS  261 (609)
T ss_pred             CceeeccccchHHhhhccccCcccc-----hhh----hheeeCCCCCeehh
Confidence            9999997655554444333221100     000    26788888876654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=1e-13  Score=114.68  Aligned_cols=157  Identities=18%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|.+|.+    +-++|+++-.+. |.|||+++.++.......                                     
T Consensus        88 t~IL~Vrm----Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~-------------------------------------  125 (391)
T KOG2110|consen   88 TSILAVRM----NRKRLVVCLEES-IYIYDIKDMKLLHTIETT-------------------------------------  125 (391)
T ss_pred             CceEEEEE----ccceEEEEEccc-EEEEecccceeehhhhcc-------------------------------------
Confidence            57999998    345777776655 999999988765543210                                     


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                           ..+...+.++++++.+.+++.  . ..|.|.+||.. +-+....       +..|.+.+
T Consensus       126 ---------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~-------I~aH~~~l  176 (391)
T KOG2110|consen  126 ---------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNT-------INAHKGPL  176 (391)
T ss_pred             ---------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeE-------EEecCCce
Confidence                                 234455667777777778886  3 78999999998 6666665       57899999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      -+++|+++| .+||++|..|+ |||+.+.+++.    +..|+. .          -....|.+++|+|++++|++.++ +
T Consensus       177 Aalafs~~G-~llATASeKGTVIRVf~v~~G~k----l~eFRR-G----------~~~~~IySL~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  177 AALAFSPDG-TLLATASEKGTVIRVFSVPEGQK----LYEFRR-G----------TYPVSIYSLSFSPDSQFLAASSNTE  240 (391)
T ss_pred             eEEEECCCC-CEEEEeccCceEEEEEEcCCccE----eeeeeC-C----------ceeeEEEEEEECCCCCeEEEecCCC
Confidence            999999999 99999999886 79999988764    233333 0          00247899999999999999887 9


Q ss_pred             eEEEEEccC
Q 015290          349 NLKLWDIRM  357 (409)
Q Consensus       349 ~v~iwd~~~  357 (409)
                      +|+++.+..
T Consensus       241 TVHiFKL~~  249 (391)
T KOG2110|consen  241 TVHIFKLEK  249 (391)
T ss_pred             eEEEEEecc
Confidence            999999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=6.9e-15  Score=123.56  Aligned_cols=192  Identities=18%  Similarity=0.209  Sum_probs=132.7

Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccccee
Q 015290          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  196 (409)
                      ..++|  +.+|..+++++.||++|+|+..+......                                            
T Consensus       148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------------------------------------  181 (398)
T KOG0771|consen  148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSMLTILE--------------------------------------------  181 (398)
T ss_pred             eEEEE--cCCCCEeeeccccceEEEEecCcchhhhh--------------------------------------------
Confidence            67888  78999999999999999999655432221                                            


Q ss_pred             EEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE
Q 015290          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  275 (409)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  275 (409)
                                       ...|.+.|.++.|+|||++|++- .| ..++|+.+ ++..+...     +-.........+.|
T Consensus       182 -----------------e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~g~~~a~~-----t~~~k~~~~~~cRF  237 (398)
T KOG0771|consen  182 -----------------EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-TGAALARK-----TPFSKDEMFSSCRF  237 (398)
T ss_pred             -----------------hHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-cCchhhhc-----CCcccchhhhhcee
Confidence                             15788999999999999999997 77 99999999 56444431     01223344566777


Q ss_pred             eCCC--CC-EEEE-EeCCCeEEEEeCCCcccc--ccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          276 HPIY--CN-LLAY-SSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       276 ~p~~--~~-~l~s-~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      +.++  +. ++++ ....+.|+.||+....-.  ....+....              ...|.+++.++||+++|.|+. |
T Consensus       238 ~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~--------------~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  238 SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR--------------FKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc--------------cCcceeEEEcCCCcEEEEeccCC
Confidence            7653  12 2332 234456777766543210  000111111              247999999999999999985 9


Q ss_pred             eEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|-|++..+ -+.++-. +.|...+               +.+.|+||.+++++.+.|..+
T Consensus       304 sVai~~~~~-lq~~~~vk~aH~~~V---------------T~ltF~Pdsr~~~svSs~~~~  348 (398)
T KOG0771|consen  304 SVAIYDAKS-LQRLQYVKEAHLGFV---------------TGLTFSPDSRYLASVSSDNEA  348 (398)
T ss_pred             cEEEEEece-eeeeEeehhhheeee---------------eeEEEcCCcCcccccccCCce
Confidence            999999875 4444433 4566655               799999999999988877653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=5.1e-15  Score=127.90  Aligned_cols=178  Identities=20%  Similarity=0.309  Sum_probs=129.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|.+-.|+|||.-|++++.||.|++|.-.+.-.                            .++....         
T Consensus       103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----------------------------Stl~Q~~---------  145 (737)
T KOG1524|consen  103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----------------------------STVVQNE---------  145 (737)
T ss_pred             hhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----------------------------HHHhhcC---------
Confidence            889999999999999999999999999999765431                            1222223         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         .+|.|++|  .|++..++.|..+ .+.|=-+.-.                                           
T Consensus       146 ---~~v~c~~W--~p~S~~vl~c~g~-h~~IKpL~~n-------------------------------------------  176 (737)
T KOG1524|consen  146 ---ESIRCARW--APNSNSIVFCQGG-HISIKPLAAN-------------------------------------------  176 (737)
T ss_pred             ---ceeEEEEE--CCCCCceEEecCC-eEEEeecccc-------------------------------------------
Confidence               68999999  5777666665443 3433222211                                           


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                      .++++  ..+|++-|.++.|++..+.+++| .|-..++||-.  +..+..       -..|..+
T Consensus       177 ----------------~k~i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~-------S~~~ey~  229 (737)
T KOG1524|consen  177 ----------------SKIIR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFT-------SAAEEYA  229 (737)
T ss_pred             ----------------cceeE--EeccCcEEEEeecCccccceeecCCceeEEeeccc--Cccccc-------CChhccc
Confidence                            01111  16899999999999999999999 99999999987  444433       4668899


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      |++++|+|+  ..++.+|.. ++++   ..          .+               .+.|..++||+||..+++|.. |
T Consensus       230 ITSva~npd--~~~~v~S~n-t~R~---~~----------p~---------------~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  230 ITSVAFNPE--KDYLLWSYN-TARF---SS----------PR---------------VGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeeeeccc--cceeeeeee-eeee---cC----------CC---------------ccceEEEEEcCCCceeeccccCc
Confidence            999999998  466656543 3441   11          11               357999999999999999875 6


Q ss_pred             eEEE
Q 015290          349 NLKL  352 (409)
Q Consensus       349 ~v~i  352 (409)
                      .+.+
T Consensus       279 ~v~~  282 (737)
T KOG1524|consen  279 QLIV  282 (737)
T ss_pred             eEEE
Confidence            6654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1e-13  Score=126.44  Aligned_cols=185  Identities=12%  Similarity=0.140  Sum_probs=117.9

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+.+|  +|||+.|+..+.+   ..|.+||+.+++...+.                                     
T Consensus       196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-------------------------------------  236 (427)
T PRK02889        196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-------------------------------------  236 (427)
T ss_pred             CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence            67889999  7999999887643   35899999877543321                                     


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                               ...+.+...+|+|||+.|+. . .++...||.+...+.....       +..+..
T Consensus       237 -------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~  284 (427)
T PRK02889        237 -------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG  284 (427)
T ss_pred             -------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence                                     11233457899999998874 4 6777677665422322332       344445


Q ss_pred             ceEEEEEeCCCCCEEEEEeC-CCeEEEEeC--CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ......|+||| +.|+..+. +|...+|.+  .+++.     ..+..           .  .......+|+|||++|+..
T Consensus       285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~-----------~--g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-----QRVTF-----------T--GSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-----EEEec-----------C--CCCcCceEECCCCCEEEEE
Confidence            56678999999 77665553 456666654  33321     11111           0  1223467899999999866


Q ss_pred             ec----CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          346 DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       346 ~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      +.    ..|.+||+.. ++.. .+..... .               ....|+|||++|+.++.++
T Consensus       346 s~~~g~~~I~v~d~~~-g~~~-~lt~~~~-~---------------~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        346 SRVGGAFKLYVQDLAT-GQVT-ALTDTTR-D---------------ESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EccCCcEEEEEEECCC-CCeE-EccCCCC-c---------------cCceECCCCCEEEEEEecC
Confidence            43    3699999975 4432 3322211 1               2689999999998877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.9e-13  Score=123.33  Aligned_cols=184  Identities=16%  Similarity=0.170  Sum_probs=119.2

Q ss_pred             cceEEEEEEecCCCCEEEEEe---CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+.+|  +|||+.|+..+   .+..|.+|++.+++...+..                                    
T Consensus       199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------------------------  240 (429)
T PRK03629        199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------------------------  240 (429)
T ss_pred             CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC------------------------------------
Confidence            57899999  89999988754   23578888887765433211                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                ....+..++|+|||+.|+..  .++  .|++||+. .+.....        ..+
T Consensus       241 --------------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~l--------t~~  285 (429)
T PRK03629        241 --------------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQV--------TDG  285 (429)
T ss_pred             --------------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEc--------cCC
Confidence                                      11223457999999988864  344  58889988 4444332        333


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCC-Ce--EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSR-GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ...+....|+|+| +.|+..+.+ +.  |.++|+.+++.     ..+..             .........|+|||++|+
T Consensus       286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence            4457789999999 877766643 44  44446655432     11111             012355789999999988


Q ss_pred             Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ..+ +   ..|.+||+.. ++ ...+..... .               ....|+|||++|+.++.++.
T Consensus       347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~-~---------------~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFL-D---------------ETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             EEEccCCCceEEEEECCC-CC-eEEeCCCCC-C---------------CCceECCCCCEEEEEEcCCC
Confidence            653 2   4688999875 43 333432211 1               26889999999999888764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.8e-13  Score=125.41  Aligned_cols=204  Identities=14%  Similarity=0.106  Sum_probs=132.1

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      ...|...+.+.+|+|||+.||..+.   +..|.+||+.+++.                            ..+..+.   
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------~~l~~~~---  245 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------ELVGNFP---  245 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------------EEeecCC---
Confidence            3347789999999999999988763   46899999987652                            2233333   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEE-EEeCCCe--EEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                               +.+...+|  +|||+.|+ +.+.++.  |.+||+.++....+                             
T Consensus       246 ---------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L-----------------------------  285 (435)
T PRK05137        246 ---------GMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL-----------------------------  285 (435)
T ss_pred             ---------CcccCcEE--CCCCCEEEEEEecCCCceEEEEECCCCceEEc-----------------------------
Confidence                     56678899  89998876 4455554  66667766644332                             


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeee
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVD  257 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~  257 (409)
                                                       ..+........|+|||+.++..  .+|  .|+++|+. .+.....  
T Consensus       286 ---------------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~l--  329 (435)
T PRK05137        286 ---------------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRI--  329 (435)
T ss_pred             ---------------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEe--
Confidence                                             2233344568999999988865  333  67777876 4433322  


Q ss_pred             cCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE
Q 015290          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (409)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  334 (409)
                            ..+...+....|+|+| +.|+..+.+   ..|.+||+..+..     +.+..              ...+..+.
T Consensus       330 ------t~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~--------------~~~~~~p~  383 (435)
T PRK05137        330 ------SFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTS--------------GFLVEGPT  383 (435)
T ss_pred             ------ecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccC--------------CCCCCCCe
Confidence                  2223445678899999 887776543   3578888765432     22222              12356789


Q ss_pred             eccCCCEEEEee-c-C-----eEEEEEccCCCcceEEEe
Q 015290          335 FANDGQHLLSRD-Y-M-----NLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       335 ~s~~g~~l~sg~-~-~-----~v~iwd~~~~~~~~~~~~  366 (409)
                      |+|||++|+... + +     .++++|+.  +.....+.
T Consensus       384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~--g~~~~~l~  420 (435)
T PRK05137        384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLT--GRNEREVP  420 (435)
T ss_pred             ECCCCCEEEEEEccCCCCCcceEEEEECC--CCceEEcc
Confidence            999999887643 2 2     57777775  44444444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=9.3e-14  Score=111.63  Aligned_cols=117  Identities=13%  Similarity=0.252  Sum_probs=87.4

Q ss_pred             cccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---CC
Q 015290          217 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG  290 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg  290 (409)
                      ..++|.+++|+|+|+.+++  | .+..|.+||++  ...+..       +  +...+..+.|+|+| ++|++++.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~-------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFS-------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEe-------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence            4457999999999998764  5 67899999997  444433       2  24567899999999 99998874   46


Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-------cCeEEEEEccCCCcceE
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA  363 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-------~~~v~iwd~~~~~~~~~  363 (409)
                      .|.+||.++.+.    +...+.               ..+..++|+|||++|+++.       |+.++||+..  |+.+.
T Consensus       126 ~l~~wd~~~~~~----i~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~  184 (194)
T PF08662_consen  126 DLEFWDVRKKKK----ISTFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY  184 (194)
T ss_pred             EEEEEECCCCEE----eecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence            799999997543    122222               3578999999999999863       4788999985  77665


Q ss_pred             EEe
Q 015290          364 TFK  366 (409)
Q Consensus       364 ~~~  366 (409)
                      ...
T Consensus       185 ~~~  187 (194)
T PF08662_consen  185 KKP  187 (194)
T ss_pred             ecc
Confidence            543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=7.2e-13  Score=109.46  Aligned_cols=226  Identities=13%  Similarity=0.142  Sum_probs=136.8

Q ss_pred             CCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ...|+|++|-| .++-|++|+..| |.||........   ++.++....+.          -.+..-.||          
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~---~r~~~~~s~~~----------~qvl~~pgh----------  195 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA---NRNIRMMSTHH----------LQVLQDPGH----------  195 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCccccc---ccccccccccc----------hhheeCCCC----------
Confidence            46899999999 567888888765 999987643321   00011000000          001122344          


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         .+|++++|  ++||..+++++. |..|+|||..++....+..                                   
T Consensus       196 ---~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-----------------------------------  235 (445)
T KOG2139|consen  196 ---NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-----------------------------------  235 (445)
T ss_pred             ---ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCcccccc-----------------------------------
Confidence               48999999  789999999864 5789999999987655421                                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                                ...+.+.-+.|+||+.+|+++ -|+..++|+....-...+        ..-..+
T Consensus       236 --------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--------w~lgsg  281 (445)
T KOG2139|consen  236 --------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--------WILGSG  281 (445)
T ss_pred             --------------------------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--------eeccCC
Confidence                                      123457789999999999999 999999997652222221        222345


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc--ccccccc--cccCCcccccc---cccceeeeEeccCCCE
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA--RILRDAA--ESHGSKSFFTE---IIASISDIKFANDGQH  341 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~---~~~~i~~~~~s~~g~~  341 (409)
                      .|...+|+|+|..+|++.+....  +|.+.-...+....  .....+.  .+-...++..+   -.+.+.+++|.|.|.+
T Consensus       282 rvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey  359 (445)
T KOG2139|consen  282 RVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY  359 (445)
T ss_pred             ceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence            89999999999555555555544  44332211110000  0000000  00000111111   1367899999999999


Q ss_pred             EEEeec---------CeEEEEEccC
Q 015290          342 LLSRDY---------MNLKLWDIRM  357 (409)
Q Consensus       342 l~sg~~---------~~v~iwd~~~  357 (409)
                      ||+.-.         ..|.+||.+.
T Consensus       360 Lav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  360 LAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEEEEcCCchhhhhhhhhhhhcccc
Confidence            997422         3467788764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=6.3e-13  Score=121.86  Aligned_cols=182  Identities=12%  Similarity=0.029  Sum_probs=119.9

Q ss_pred             cceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+.+|  +|||+.|+..+.   +..|.+||+.+++...+                                      
T Consensus       202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--------------------------------------  241 (435)
T PRK05137        202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV--------------------------------------  241 (435)
T ss_pred             CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence            68999999  899999888753   46899999887654332                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCe--EEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                              ..+.+.+...+|+|||+.|+. . .++.  |++||+. .+....        +..+
T Consensus       242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~  288 (435)
T PRK05137        242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS  288 (435)
T ss_pred             ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence                                    223344567899999998764 3 4554  7777887 444332        3445


Q ss_pred             cCceEEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ........|+|+| +.|+..+. +|  .|.+||+..++.     +.+..             +...+....|+|||++|+
T Consensus       289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~-------------~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP-----RRISF-------------GGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe-----EEeec-------------CCCcccCeEECCCCCEEE
Confidence            5556789999999 87776653 33  678888776542     22211             023456688999999998


Q ss_pred             Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ... +   ..|.+||+..  .....+.... ..               ....|+|||+.|+..+.+
T Consensus       350 ~~~~~~~~~~i~~~d~~~--~~~~~lt~~~-~~---------------~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDG--SGERILTSGF-LV---------------EGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EEEcCCCceEEEEEECCC--CceEeccCCC-CC---------------CCCeECCCCCEEEEEEcc
Confidence            754 2   4688888753  3333332211 11               378999999998765543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=9.9e-13  Score=102.87  Aligned_cols=222  Identities=14%  Similarity=0.208  Sum_probs=146.3

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .+..|+.+|+.++|.  ..+|++|+ ||.|+=|......+.           .+....|...++++.             
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es-----------~~~K~lwe~~~P~~~-------------  109 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES-----------LATKRLWEVKIPMQV-------------  109 (325)
T ss_pred             eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh-----------ccchhhhhhcCcccc-------------
Confidence            335699999999999  45777776 599999987654321           000111111111110             


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                       ..++. ..|+++-.  .|...-+++++.|+.+.-||+++|+.++.+                                 
T Consensus       110 -~~~ev-PeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~i~r~~---------------------------------  152 (325)
T KOG0649|consen  110 -DAVEV-PEINAMWL--DPSENSILFAGGDGVIYQVDLEDGRIQREY---------------------------------  152 (325)
T ss_pred             -CcccC-CccceeEe--ccCCCcEEEecCCeEEEEEEecCCEEEEEE---------------------------------
Confidence             00111 46888888  566667777889999999999999876652                                 


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCC--CcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNM  263 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~--~~~  263 (409)
                                                  ++|.+.|.++.--.....+++| .||++++||.+ +.+..+++..-.  ..+
T Consensus       153 ----------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk~~~~l  203 (325)
T KOG0649|consen  153 ----------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYKNPNLL  203 (325)
T ss_pred             ----------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEeccccChhhc
Confidence                                        7999999999885455578888 99999999999 777776654321  122


Q ss_pred             cCc-cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          264 DDL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       264 ~~~-~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      ..| ..+|.+++.+.   .++++|+ ...+.+|.+++.+.    ..++..              .+.+..+.|..|  .+
T Consensus       204 Rp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~----t~vfpi--------------pa~v~~v~F~~d--~v  259 (325)
T KOG0649|consen  204 RPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSES----TCVFPI--------------PARVHLVDFVDD--CV  259 (325)
T ss_pred             CcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCc----eEEEec--------------ccceeEeeeecc--eE
Confidence            223 34567777654   5677664 55699999998653    244444              356788888755  56


Q ss_pred             EEeec-CeEEEEEccCCCcceEEEec
Q 015290          343 LSRDY-MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       343 ~sg~~-~~v~iwd~~~~~~~~~~~~~  367 (409)
                      ++++. +.|.-|.+.  |..-.....
T Consensus       260 l~~G~g~~v~~~~l~--Gvl~a~ip~  283 (325)
T KOG0649|consen  260 LIGGEGNHVQSYTLN--GVLQANIPV  283 (325)
T ss_pred             EEeccccceeeeeec--cEEEEeccC
Confidence            66664 889999875  554444443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.59  E-value=2.8e-13  Score=110.06  Aligned_cols=179  Identities=15%  Similarity=0.261  Sum_probs=134.9

Q ss_pred             eeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceee
Q 015290           14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY   93 (409)
Q Consensus        14 w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (409)
                      |+.-..+++        |...|+.|+|+|..+.|++|+.|..-.||....+.                        .+++
T Consensus        45 w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~------------------------~Wkp   92 (361)
T KOG1523|consen   45 WEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG------------------------TWKP   92 (361)
T ss_pred             ceeceehhh--------hCcceeEEeecCCCCceeEccCCCCccccccCCCC------------------------eecc
Confidence            555555444        89999999999999999999999999999984332                        3344


Q ss_pred             eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (409)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (409)
                      .-.+..+.            ..+++|.|  +|.++.|++++.-+.|.||-++..+--...                    
T Consensus        93 tlvLlRiN------------rAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVs--------------------  138 (361)
T KOG1523|consen   93 TLVLLRIN------------RAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVS--------------------  138 (361)
T ss_pred             ceeEEEec------------cceeeEee--cCcCceEEeccCccEEEEEEEecccceehh--------------------
Confidence            44455555            89999999  799999999999999999988754322211                    


Q ss_pred             eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCce
Q 015290          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  252 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~  252 (409)
                                                        +.++   ..+...|.+++|+|++-+|++| .|+..+++..-..   
T Consensus       139 ----------------------------------Khik---kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK---  178 (361)
T KOG1523|consen  139 ----------------------------------KHIK---KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK---  178 (361)
T ss_pred             ----------------------------------hhhC---CccccceeeeeccCCcceecccccCcceeEEEEeee---
Confidence                                              1111   4567789999999999999999 9999999875311   


Q ss_pred             eeeeecCC---------------CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc
Q 015290          253 FNIVDMKP---------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (409)
Q Consensus       253 ~~~~~~~~---------------~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~  301 (409)
                        -++.++               .++....+.+..+.|+|+| ..|+-.+.|..+.+-|.....
T Consensus       179 --~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  179 --GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             --ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence              111111               0122346789999999999 999999999999999987754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.5e-13  Score=122.65  Aligned_cols=182  Identities=14%  Similarity=0.112  Sum_probs=118.0

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+.+|  +|||+.|+..+.+   ..|.+||+.+++...+                                      
T Consensus       204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--------------------------------------  243 (433)
T PRK04922        204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV--------------------------------------  243 (433)
T ss_pred             CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            67889999  8999999887643   4688899877654332                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                              ....+...+.+|+|+|+.++. . .++  .|++||+. .+....        +..+
T Consensus       244 ------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~  290 (433)
T PRK04922        244 ------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH  290 (433)
T ss_pred             ------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence                                    112223346799999998764 3 444  69999998 444332        3334


Q ss_pred             cCceEEEEEeCCCCCEEEEEe-CCCe--EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSS-SRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .......+|+|+| +.|+..+ .+|.  |.++|+.+++.     +.+..             +......++|+|||++|+
T Consensus       291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~-----~~lt~-------------~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSA-----ERLTF-------------QGNYNARASVSPDGKKIA  351 (433)
T ss_pred             CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence            4455678999999 8777665 3444  66667665542     11111             012344689999999998


Q ss_pred             Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ..+ +   ..|.+||+.. ++.. .+... ...               ....|+|||++|+..+.+
T Consensus       352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~-~~~---------------~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLST-GSVR-TLTPG-SLD---------------ESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             EEECCCCceeEEEEECCC-CCeE-ECCCC-CCC---------------CCceECCCCCEEEEEEec
Confidence            653 2   3699999874 4433 33322 121               268999999988876654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=1.1e-13  Score=112.73  Aligned_cols=275  Identities=14%  Similarity=0.158  Sum_probs=157.8

Q ss_pred             CCcEEEEEECCCCCEEEEE-ecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      -+.|.-+.|..|..+++++ ..++.|.+|++...+                           ....+....         
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~---------   91 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ---------   91 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC---------
Confidence            3678888999888776655 477899999987544                           334444444         


Q ss_pred             eeccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         +++.+++|  ||||+ .|.+...|-.|.+|.+.+.+...+....              ...-...+++++.+.+...
T Consensus        92 ---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--------------~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   92 ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--------------TNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             ---CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccc--------------cCceeEEECCCCceeeeee
Confidence               78999999  89994 5567788999999999887654432110              0111222334444444333


Q ss_pred             ccccc-eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe---cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          190 WTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       190 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ..... .+.+.   ....-..++.+ .-..-..+.+.|+|||..|+.=   -+-.|..|...                  
T Consensus       153 RrDCkdyv~i~---~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~------------------  210 (447)
T KOG4497|consen  153 RRDCKDYVQIS---SCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG------------------  210 (447)
T ss_pred             cccHHHHHHHH---hhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec------------------
Confidence            21000 01110   00111122222 3334456789999999777652   23333322221                  


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc---------------------c-------c----cccccc
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---------------------S-------A----RILRDA  313 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------~-------~----~~~~~~  313 (409)
                        -.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+....                     .       +    ..++.|
T Consensus       211 --lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~  287 (447)
T KOG4497|consen  211 --LGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH  287 (447)
T ss_pred             --cceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence              346788999998 9999999999988865433211000                     0       0    000000


Q ss_pred             -----------ccccCCc------ccccccccceeeeEeccCCCEEEEeec---CeEEEEEccCCCcceEEEecccCccc
Q 015290          314 -----------AESHGSK------SFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRP  373 (409)
Q Consensus       314 -----------~~~~~~~------~~~~~~~~~i~~~~~s~~g~~l~sg~~---~~v~iwd~~~~~~~~~~~~~~~~~~~  373 (409)
                                 ...|...      +-+......+..++|++|..|+++-.|   +.+-+||++. .+....+. ...++ 
T Consensus       288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~pi-  364 (447)
T KOG4497|consen  288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHPI-  364 (447)
T ss_pred             ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhh-hccce-
Confidence                       0000000      111222346778999999999999865   8999999984 44333332 23332 


Q ss_pred             ccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                                    +...|+|....|+.+.
T Consensus       365 --------------raf~WdP~~prL~vct  380 (447)
T KOG4497|consen  365 --------------RAFEWDPGRPRLVVCT  380 (447)
T ss_pred             --------------eEEEeCCCCceEEEEc
Confidence                          5788888877666543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=3.5e-14  Score=115.69  Aligned_cols=216  Identities=18%  Similarity=0.248  Sum_probs=140.2

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      -++|||+|+|+|+++.- .+.|-|.++-+..                           ..+..             -+.|
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---------------------------qlf~c-------------ldki   51 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---------------------------QLFLC-------------LDKI   51 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH---------------------------HHHHH-------------HHHh
Confidence            46899999999999865 7888887765531                           11111             0578


Q ss_pred             EEEEEEecCCCCEEEE-EeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          117 NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      .-|.|  +.|..+++. +..|+.|.+|++...+.....                                          
T Consensus        52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI------------------------------------------   87 (447)
T KOG4497|consen   52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCKI------------------------------------------   87 (447)
T ss_pred             hheee--eccceeeeeeeeccceEEEEEeecceeEEEe------------------------------------------
Confidence            88999  577766555 478889999999876654332                                          


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                                         ....+.+.++.|+|+|+.++ +. -+-+|.+|.+. +......        +-.+..+..+
T Consensus        88 -------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~~~~~--------~~pK~~~kg~  139 (447)
T KOG4497|consen   88 -------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQKGYLL--------PHPKTNVKGY  139 (447)
T ss_pred             -------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cceeEEe--------cccccCceeE
Confidence                               34556788999999996665 45 89999999998 4444432        2223456889


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec---CeE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL  350 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~---~~v  350 (409)
                      +|+|+| ++.+.+++......+.+..-+ .....+.+.             -..-..+.+.|+|||..||+-..   -.|
T Consensus       140 ~f~~dg-~f~ai~sRrDCkdyv~i~~c~-~W~ll~~f~-------------~dT~DltgieWsPdg~~laVwd~~Leykv  204 (447)
T KOG4497|consen  140 AFHPDG-QFCAILSRRDCKDYVQISSCK-AWILLKEFK-------------LDTIDLTGIEWSPDGNWLAVWDNVLEYKV  204 (447)
T ss_pred             EECCCC-ceeeeeecccHHHHHHHHhhH-HHHHHHhcC-------------CCcccccCceECCCCcEEEEecchhhhee
Confidence            999999 888877654322222222110 000011111             12346788999999987765431   223


Q ss_pred             EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..|...            .+                +..++|+|.+++|+.|+.|+.+
T Consensus       205 ~aYe~~------------lG----------------~k~v~wsP~~qflavGsyD~~l  234 (447)
T KOG4497|consen  205 YAYERG------------LG----------------LKFVEWSPCNQFLAVGSYDQML  234 (447)
T ss_pred             eeeeec------------cc----------------eeEEEeccccceEEeeccchhh
Confidence            322221            12                1479999999999999999865

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=2e-14  Score=122.18  Aligned_cols=266  Identities=13%  Similarity=0.116  Sum_probs=171.9

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .-..+.++.+|++|+.|+..|.|-.+|..++.+                           ..++.--             
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------------~~Ei~v~-------------  170 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------------HFEINVM-------------  170 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeeccccee---------------------------eeeeehh-------------
Confidence            345788999999999999999999999998874                           2222222             


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|.++.|.  .+.++|++ ...+.+.|||-..-++.++...               ..+....+-+---.++.++  ..
T Consensus       171 Etv~Dv~~L--Hneq~~AV-AQK~y~yvYD~~GtElHClk~~---------------~~v~rLeFLPyHfLL~~~~--~~  230 (545)
T KOG1272|consen  171 ETVRDVTFL--HNEQFFAV-AQKKYVYVYDNNGTELHCLKRH---------------IRVARLEFLPYHFLLVAAS--EA  230 (545)
T ss_pred             hhhhhhhhh--cchHHHHh-hhhceEEEecCCCcEEeehhhc---------------Cchhhhcccchhheeeecc--cC
Confidence            578888884  44444444 4557788998776655544321               1111111111112222222  25


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                      |.++.-|+.+   ++.+..+ ..-.+.+..|+-+|-.-.+-+| .+|+|.+|.........+        +..|.++|.+
T Consensus       231 G~L~Y~DVS~---GklVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~s  298 (545)
T KOG1272|consen  231 GFLKYQDVST---GKLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSS  298 (545)
T ss_pred             CceEEEeech---hhhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcce
Confidence            6677777755   4444443 4455677888999988888899 999999999984333333        5779999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEE
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  352 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~i  352 (409)
                      +++.++| +|++|.+.|..++|||+|+-...    ..+..              ..+...+++|..| +||.+-...|.|
T Consensus       299 iAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql----~t~~t--------------p~~a~~ls~Sqkg-lLA~~~G~~v~i  358 (545)
T KOG1272|consen  299 IAVDRGG-RYMATTGLDRKVKIWDLRNFYQL----HTYRT--------------PHPASNLSLSQKG-LLALSYGDHVQI  358 (545)
T ss_pred             EEECCCC-cEEeecccccceeEeeecccccc----ceeec--------------CCCcccccccccc-ceeeecCCeeee
Confidence            9999999 99999999999999999985421    11111              1356778888766 555554478899


Q ss_pred             EEccCCC--cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          353 WDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       353 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      |.=...+  ..-..+..|.-.             -.|..+.|.|-...|-.|-.
T Consensus       359 w~d~~~~s~~~~~pYm~H~~~-------------~~V~~l~FcP~EDvLGIGH~  399 (545)
T KOG1272|consen  359 WKDALKGSGHGETPYMNHRCG-------------GPVEDLRFCPYEDVLGIGHA  399 (545)
T ss_pred             ehhhhcCCCCCCcchhhhccC-------------cccccceeccHHHeeecccc
Confidence            9532211  222222223221             12358888887665554443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=2.5e-13  Score=117.64  Aligned_cols=143  Identities=18%  Similarity=0.237  Sum_probs=103.5

Q ss_pred             ccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCC-------------ceeeeeecC-------CCcCcCccCceEEEEE
Q 015290          218 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISD-------------QCFNIVDMK-------PSNMDDLTEVITSAEF  275 (409)
Q Consensus       218 ~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~-------------~~~~~~~~~-------~~~~~~~~~~v~~~~~  275 (409)
                      +..++|+.|-|.+. .++.+ .+|.+++||.....             ..+.+..-+       ...+.--.+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            36788999988644 44455 89999999764211             111110000       0011122457889999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD  354 (409)
Q Consensus       276 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd  354 (409)
                      +||| ++||+.+.||.+||||..+.++.    ..+.             ..-+.+.|++|||||+||++|++ .-|.||.
T Consensus       299 S~DG-~~LA~VSqDGfLRvF~fdt~eLl----g~mk-------------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  299 SPDG-KYLATVSQDGFLRIFDFDTQELL----GVMK-------------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             cCCC-ceEEEEecCceEEEeeccHHHHH----HHHH-------------hhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence            9999 99999999999999999886542    2221             11347999999999999999985 9999999


Q ss_pred             ccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC
Q 015290          355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (409)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  394 (409)
                      +.. ++.+..-.+|..++               ..|+|.|
T Consensus       361 f~e-rRVVARGqGHkSWV---------------s~VaFDp  384 (636)
T KOG2394|consen  361 FEE-RRVVARGQGHKSWV---------------SVVAFDP  384 (636)
T ss_pred             ecc-ceEEEeccccccce---------------eeEeecc
Confidence            974 89999999999998               5888886

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=1.7e-13  Score=118.72  Aligned_cols=163  Identities=10%  Similarity=0.204  Sum_probs=105.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|+++.|.| -+...|+.+-.+|.+.++|.....-..-..+.          ...++..+                   
T Consensus       220 tsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~----------~~k~~~~f-------------------  269 (636)
T KOG2394|consen  220 SSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ----------ALKDGDQF-------------------  269 (636)
T ss_pred             cceEEEEEEe-CCCceEEEEEecCceEEeeccccccCCCCccc----------ccCCCCee-------------------
Confidence            6899999986 45557778888899999987321100000000          00000000                   


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                       .|..|.-..  ...++..+ .--.+.|+..+|+|||++||+. .||.++|+|.. ....+.+       ++..-+...|
T Consensus       270 -~i~t~ksk~--~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLLC  337 (636)
T KOG2394|consen  270 -AILTSKSKK--TRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLLC  337 (636)
T ss_pred             -EEeeeeccc--cCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceEE
Confidence             111221111  11222222 2233488999999999999998 99999999998 4444443       3444567899


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                      ++|+||| +++++|+.|.-|.||.+...+.      +-.+           .+|..+|..++|.
T Consensus       338 vcWSPDG-KyIvtGGEDDLVtVwSf~erRV------VARG-----------qGHkSWVs~VaFD  383 (636)
T KOG2394|consen  338 VCWSPDG-KYIVTGGEDDLVTVWSFEERRV------VARG-----------QGHKSWVSVVAFD  383 (636)
T ss_pred             EEEcCCc-cEEEecCCcceEEEEEeccceE------EEec-----------cccccceeeEeec
Confidence            9999999 9999999999999999987643      1222           4567788888887

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=1.7e-14  Score=130.96  Aligned_cols=238  Identities=13%  Similarity=0.156  Sum_probs=160.5

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      --+|.+.|+.++.+....++|+++.|..|++|.+.++.                           ++..++||+      
T Consensus       228 ~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~---------------------------pvsvLrght------  274 (1113)
T KOG0644|consen  228 CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA---------------------------PVSVLRGHT------  274 (1113)
T ss_pred             CCCCccccchhccchhhhhhhhcccCceEEEEecCCCc---------------------------hHHHHhccc------
Confidence            34599999999999999999999999999999999887                           567889999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ++|++|+|  +|-.    +.+.||++++||.+-. ......   .+     ........+.+..+.....-..+
T Consensus       275 ------gavtaiaf--sP~~----sss~dgt~~~wd~r~~-~~~y~p---rp-----~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  275 ------GAVTAIAF--SPRA----SSSDDGTCRIWDARLE-PRIYVP---RP-----LKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ------cceeeecc--Cccc----cCCCCCceEecccccc-ccccCC---CC-----CCcccccceeeeecccccccccc
Confidence                  99999999  4443    7789999999998711 111100   00     00001111111111111122222


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ++  .++.-+.|.+..          +..+...+.-+..+.+ ..+.+++ .+-.+++|++. .+...+.       +.+
T Consensus       334 gs--~d~ea~n~e~~~----------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~-~g~l~H~-------l~g  393 (1113)
T KOG0644|consen  334 GS--RDGEARNHEFEQ----------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY-TGQLLHN-------LMG  393 (1113)
T ss_pred             cc--CCcccccchhhH----------hhhhccceEEEeccccccccceeeeeeeEeeeeecc-cchhhhh-------hcc
Confidence            22  244444444322          0122222222233323 2456667 88899999998 7776665       688


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |...++.+.++|-++....+++.||...|||+-.+...    +.+..            + ...+...+||+||+.++..
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi----k~y~~------------g-h~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI----KHYFI------------G-HGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc----eeeec------------c-cceeeccccCCCCceEecC
Confidence            99999999999998788889999999999999887542    22222            1 2467788999999999988


Q ss_pred             ec-CeEEEEEcc
Q 015290          346 DY-MNLKLWDIR  356 (409)
Q Consensus       346 ~~-~~v~iwd~~  356 (409)
                      .+ |.++|....
T Consensus       457 d~hgql~i~g~g  468 (1113)
T KOG0644|consen  457 DDHGQLYILGTG  468 (1113)
T ss_pred             CCCCceEEeccC
Confidence            87 999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=1.2e-12  Score=109.27  Aligned_cols=215  Identities=14%  Similarity=0.148  Sum_probs=146.1

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      .+|..++.. || .|++|-.+|.+.+|....+...                       -..+..+..+            
T Consensus       106 ~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h-----------------------ss~l~~la~g------------  148 (412)
T KOG3881|consen  106 KSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH-----------------------SSKLIKLATG------------  148 (412)
T ss_pred             ccccchhhc-CC-EEEEEecCCcEEEEeccCCccc-----------------------cccceeeecC------------
Confidence            344444433 33 5777888999999998865520                       0112223333            


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCC--CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                       ..+..+.-++ .+...+++|+..  +.+++||+.+.+.....+-....            .                  
T Consensus       149 -~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD------------~------------------  196 (412)
T KOG3881|consen  149 -PGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND------------R------------------  196 (412)
T ss_pred             -CceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCc------------c------------------
Confidence             3566666532 333456668888  88999999887433321100000            0                  


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                       -+-.+.+|+                     +.+.|-+.  ...|+++ .-+.+++||.+..+.++..+       .-..
T Consensus       197 -L~LrVPvW~---------------------tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-------d~~E  247 (412)
T KOG3881|consen  197 -LGLRVPVWI---------------------TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-------DFLE  247 (412)
T ss_pred             -ccceeeeee---------------------ccceecCCCCCceEEEEecceeEEEecCcccCcceeEe-------cccc
Confidence             011344443                     45566655  6788998 99999999999777777764       3345


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      .+++++...|.+ +++++|..-|.+..||++.+++..   ..             +.+..+.|+++..+|.+++||+++ 
T Consensus       248 ~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g---~~-------------~kg~tGsirsih~hp~~~~las~GL  310 (412)
T KOG3881|consen  248 NPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLG---CG-------------LKGITGSIRSIHCHPTHPVLASCGL  310 (412)
T ss_pred             CcceeeeecCCC-cEEEEecccchhheecccCceeec---cc-------------cCCccCCcceEEEcCCCceEEeecc
Confidence            789999999999 999999999999999999987532   11             233467899999999999999987 


Q ss_pred             cCeEEEEEccCCCcceE
Q 015290          347 YMNLKLWDIRMDSTPVA  363 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~  363 (409)
                      |..|||+|+++ .+++.
T Consensus       311 DRyvRIhD~kt-rkll~  326 (412)
T KOG3881|consen  311 DRYVRIHDIKT-RKLLH  326 (412)
T ss_pred             ceeEEEeeccc-chhhh
Confidence            79999999986 44443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=1.1e-12  Score=105.50  Aligned_cols=110  Identities=20%  Similarity=0.328  Sum_probs=82.0

Q ss_pred             cceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      ++|.+++|  +|+|+.|++.  ..++.|.+||++.....                                         
T Consensus        60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~~~i~-----------------------------------------   96 (194)
T PF08662_consen   60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKGKKIF-----------------------------------------   96 (194)
T ss_pred             CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcccEeE-----------------------------------------
Confidence            57999999  7999987665  45678999999622111                                         


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c---CCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                          .+   +...++.+.|+|+|++|+++ .   .|.+.+||.+ ..+.+..        ..| 
T Consensus        97 --------------------~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-~~~~i~~--------~~~-  143 (194)
T PF08662_consen   97 --------------------SF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-KKKKIST--------FEH-  143 (194)
T ss_pred             --------------------ee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC-CCEEeec--------ccc-
Confidence                                11   23456789999999999986 3   4679999999 5555543        123 


Q ss_pred             CceEEEEEeCCCCCEEEEEeC------CCeEEEEeCCCc
Q 015290          268 EVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQS  300 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~------dg~i~iwd~~~~  300 (409)
                      ..++.++|+|+| ++|+++..      |+.++||+....
T Consensus       144 ~~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  144 SDATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CcEEEEEEcCCC-CEEEEEEeccceeccccEEEEEecCe
Confidence            347899999999 98888763      788999998654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.53  E-value=7.2e-12  Score=110.87  Aligned_cols=280  Identities=13%  Similarity=0.098  Sum_probs=148.5

Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (409)
                      ..+.|+|||+++++++.||.|.++|+.+.+.                           +.+++..             ..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~~   79 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------GN   79 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------SE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------CC
Confidence            4478999999999999999999999998773                           4444433             35


Q ss_pred             eEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc-eeeccccccc
Q 015290          116 INRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTEN  193 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  193 (409)
                      ..++++  |+||++++++ ..++.+.++|..+.+..+.......+.      ............++... ++....  ..
T Consensus        80 ~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------~~~~~Rv~aIv~s~~~~~fVv~lk--d~  149 (369)
T PF02239_consen   80 PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------DGPESRVAAIVASPGRPEFVVNLK--DT  149 (369)
T ss_dssp             EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T------TTS---EEEEEE-SSSSEEEEEET--TT
T ss_pred             cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccc------cccCCCceeEEecCCCCEEEEEEc--cC
Confidence            778999  8999999877 468999999999887776554221110      00111122222222222 222222  13


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      +.+.+-|....... ....  ...........|+|++++++.+  .++.|-++|.. .+.....++...   ..|.....
T Consensus       150 ~~I~vVdy~d~~~~-~~~~--i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~g~---~p~~~~~~  222 (369)
T PF02239_consen  150 GEIWVVDYSDPKNL-KVTT--IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDTGK---KPHPGPGA  222 (369)
T ss_dssp             TEEEEEETTTSSCE-EEEE--EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-SS---SBEETTEE
T ss_pred             CeEEEEEecccccc-ceee--ecccccccccccCcccceeeecccccceeEEEeec-cceEEEEeeccc---cccccccc
Confidence            45555565443111 1111  2233456678999999988775  78899999998 565555544321   22333333


Q ss_pred             EEEEeCCC--------C-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          272 SAEFHPIY--------C-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       272 ~~~~~p~~--------~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      .+ .+|..        . ...++.-....+.+||..+.+.    ++.+..             ...+ .-+..+|+++++
T Consensus       223 ~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv----v~~I~~-------------~G~g-lFi~thP~s~~v  283 (369)
T PF02239_consen  223 NF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV----VKTIPT-------------QGGG-LFIKTHPDSRYV  283 (369)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE----EEEEE--------------SSSS---EE--TT-SEE
T ss_pred             cc-cCCCcceEEeeccccceecccccCCccccchhhcCeE----EEEEEC-------------CCCc-ceeecCCCCccE
Confidence            22 12221        0 1221222222445666666543    233332             1223 667889999999


Q ss_pred             EEe----ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          343 LSR----DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       343 ~sg----~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      .+.    .+ +.|.++|.++ .+.+..+.......              +..+.|++||+++..+..++
T Consensus       284 wvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------------~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  284 WVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------------VVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             EEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------------EEEEEE-TTSSEEEEEEE--
T ss_pred             EeeccCCCCCceEEEEECcC-cceeEEEeccCCCc--------------EeccEECCCCCEEEEEEecC
Confidence            987    35 9999999986 55555554333310              14899999999877665554

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=6e-12  Score=115.62  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=126.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..+.+.+....|+|||+.||..+.+   ..|.+|++.+++.                            ..+....    
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~----------------------------~~l~~~~----  242 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR----------------------------EQITNFE----  242 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE----------------------------EEccCCC----
Confidence            3567789999999999999877644   3688889887653                            1111111    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEE-EeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                              +.+....|  +|||+.|+. .+.++  .|.+||+.++....+                              
T Consensus       243 --------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------  282 (430)
T PRK00178        243 --------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------------------------------  282 (430)
T ss_pred             --------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------------------------------
Confidence                    33446889  799998874 44444  577778776654332                              


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeec
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~  258 (409)
                                                      ..+........|+|+|+.++..  .++  .|+++++. .++.....  
T Consensus       283 --------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt--  327 (430)
T PRK00178        283 --------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT--  327 (430)
T ss_pred             --------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee--
Confidence                                            1222334457899999987754  444  56667776 44433221  


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCC-C--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                          ..+  .......|+|+| +.++..+.+ +  .|.+||+.+++.     +.+..              ........|
T Consensus       328 ----~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~  381 (430)
T PRK00178        328 ----FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSV  381 (430)
T ss_pred             ----cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceE
Confidence                111  223457899999 777766543 3  578889887653     22222              011224689


Q ss_pred             ccCCCEEEEee-c---CeEEEEEccCCCcceEEEeccc
Q 015290          336 ANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       336 s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      +|||++++..+ +   ..|.++++.  +.....+..+.
T Consensus       382 spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~  417 (430)
T PRK00178        382 APNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTAQ  417 (430)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECC--CCceEECcCCC
Confidence            99999988654 2   446666764  55555555443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=1.3e-11  Score=100.51  Aligned_cols=239  Identities=13%  Similarity=0.148  Sum_probs=147.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc---
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW---  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  190 (409)
                      ....+++|  +.|...++.|..+| .+||+.+--+...........  ..+....-...++....         |..   
T Consensus         6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G--~~~veMLfR~N~laLVG---------Gg~~pk   71 (346)
T KOG2111|consen    6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG--FKIVEMLFRSNYLALVG---------GGSRPK   71 (346)
T ss_pred             CceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhhhccccCc--hhhhhHhhhhceEEEec---------CCCCCC
Confidence            45667999  68888888887776 899988652221111100000  00000000111111111         111   


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                      -.-+.+-+||=   ....++..+  .-..+|.++.+.++  .+++...+.|++|.....-+.+..++..     ......
T Consensus        72 y~pNkviIWDD---~k~~~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~-----~NPkGl  139 (346)
T KOG2111|consen   72 YPPNKVIIWDD---LKERCIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR-----SNPKGL  139 (346)
T ss_pred             CCCceEEEEec---ccCcEEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-----cCCCce
Confidence            12337899993   224454443  45678899988754  5777778899999998444555554322     111223


Q ss_pred             EEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          271 TSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      .+++=..+. .+||.-+ .-|.|.|-|+...+..               ...+..+|.+.|.+++.+-+|..|||++. |
T Consensus       140 C~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG  203 (346)
T KOG2111|consen  140 CSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKG  203 (346)
T ss_pred             EeecCCCCc-eEEEcCCCccceEEEEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence            333333333 4555433 5689999998764321               12334667899999999999999999986 4


Q ss_pred             -eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 -NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       -|||||..+ |..+..+......-             .|.+++||||+.+||++|+-|++
T Consensus       204 TLIRIFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  204 TLIRIFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             EEEEEEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeE
Confidence             589999986 88888887544431             12599999999999999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=6.8e-12  Score=114.89  Aligned_cols=206  Identities=15%  Similarity=0.161  Sum_probs=124.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecC-C--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRG-G--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.                         +.+..+.        
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-------------------------~~lt~~~--------  261 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-------------------------EKVTSFP--------  261 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------EEecCCC--------
Confidence            456688899999999999877543 3  578888877652                         1122222        


Q ss_pred             cccceeccceEEEEEEecCCCCEEEE-EeCCCe--EEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                             +......|  +|||+.|+. .+.++.  |.++|+.+++...+                               
T Consensus       262 -------g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l-------------------------------  301 (448)
T PRK04792        262 -------GINGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI-------------------------------  301 (448)
T ss_pred             -------CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-------------------------------
Confidence                   23346789  899998875 455664  66667766544322                               


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeecC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~  259 (409)
                                                     ..+.......+|+||++.++..  .++.  |.++|+. .++.....   
T Consensus       302 -------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt---  346 (448)
T PRK04792        302 -------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT---  346 (448)
T ss_pred             -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe---
Confidence                                           1223334567899999988764  4444  5556665 34333221   


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                         ..+  ......+|+|+| ++|+..+. ++  .|.++|+.+++.     ..+..              ........|+
T Consensus       347 ---~~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~--------------~~~d~~ps~s  401 (448)
T PRK04792        347 ---FEG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTS--------------TRLDESPSVA  401 (448)
T ss_pred             ---cCC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccC--------------CCCCCCceEC
Confidence               122  223457899999 77766554 44  455567776643     22222              0112245799


Q ss_pred             cCCCEEEEee-c---CeEEEEEccCCCcceEEEecccC
Q 015290          337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       337 ~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                      |||++|+... +   ..+++++..  +.....+..+..
T Consensus       402 pdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g  437 (448)
T PRK04792        402 PNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG  437 (448)
T ss_pred             CCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence            9999887653 2   347777764  676666665544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=1.4e-11  Score=113.09  Aligned_cols=183  Identities=15%  Similarity=0.135  Sum_probs=118.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+.+|  +|||++|+.+..+   ..|++||+.+++....                                      
T Consensus       190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--------------------------------------  229 (417)
T TIGR02800       190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV--------------------------------------  229 (417)
T ss_pred             CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            56888899  8999999887644   4788999877644322                                      


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                              ..+...+.+++|+|+++.|+. . .++  .|++||+. .+....        +..+
T Consensus       230 ------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~--------l~~~  276 (417)
T TIGR02800       230 ------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTR--------LTNG  276 (417)
T ss_pred             ------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEE--------CCCC
Confidence                                    122234456889999987765 3 443  58888887 443322        2333


Q ss_pred             cCceEEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ........|+|+| +.|+..+. ++  .|.++|+.+++.     ..+..             +......+.|+|+|++|+
T Consensus       277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEV-----RRLTF-------------RGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEeec-------------CCCCccCeEECCCCCEEE
Confidence            3445577899999 77765543 33  577778776542     11211             123566789999999998


Q ss_pred             Eeec-C---eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          344 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       344 sg~~-~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      .++. +   .|.+||+.. + ....+......                ...+|+|||++|+..+.++
T Consensus       338 ~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDG-G-GERVLTDTGLD----------------ESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEEccCCceEEEEEeCCC-C-CeEEccCCCCC----------------CCceECCCCCEEEEEEeCC
Confidence            7653 3   788889874 3 33333322211                2578999999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=9.3e-12  Score=114.26  Aligned_cols=205  Identities=15%  Similarity=0.168  Sum_probs=130.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..+...+.+.+|+|||++||.+..+   ..|.+||+.+++.                            ..+..+.    
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~----------------------------~~~~~~~----  233 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR----------------------------EKVASFP----  233 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------------------EEeecCC----
Confidence            3456678999999999999987654   4799999987652                            1122233    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEE-eCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                              +.+.+++|  +|||+.|+.. +.++  .|.+|++.++....+                              
T Consensus       234 --------~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l------------------------------  273 (417)
T TIGR02800       234 --------GMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL------------------------------  273 (417)
T ss_pred             --------CCccceEE--CCCCCEEEEEECCCCCccEEEEECCCCCEEEC------------------------------
Confidence                    45667889  7999877654 4443  577778776544322                              


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeec
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~  258 (409)
                                                      ..+........|+|+++.|+..  .++  .|+++|+. .+....    
T Consensus       274 --------------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~----  316 (417)
T TIGR02800       274 --------------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRR----  316 (417)
T ss_pred             --------------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEE----
Confidence                                            1122223456899999988764  344  57777776 333322    


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                          +..+......+.|+|+| ++++.++.++   .|.+||+.++..     ..+..              ........|
T Consensus       317 ----l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~--------------~~~~~~p~~  372 (417)
T TIGR02800       317 ----LTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTD--------------TGLDESPSF  372 (417)
T ss_pred             ----eecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccC--------------CCCCCCceE
Confidence                22234556788999999 8888877765   788999877542     22222              112345689


Q ss_pred             ccCCCEEEEee-c---CeEEEEEccCCCcceEEEecc
Q 015290          336 ANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       336 s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      +|||++|+..+ +   ..+++.+..  ++....+..+
T Consensus       373 spdg~~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  407 (417)
T TIGR02800       373 APNGRMILYATTRGGRGVLGLVSTD--GRFRARLPLG  407 (417)
T ss_pred             CCCCCEEEEEEeCCCcEEEEEEECC--CceeeECCCC
Confidence            99999888764 2   346666653  5555555433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=3e-12  Score=106.88  Aligned_cols=247  Identities=15%  Similarity=0.120  Sum_probs=162.7

Q ss_pred             CCCcEEEEEECCCCC--EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        31 h~~~v~~v~~~~~~~--~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ....|++++|..+++  .|..++.+..+..+.+......                     ++..-+......+       
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~---------------------s~~~~~~~~~l~~-------  105 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS---------------------SSLDDAKTVSLGT-------  105 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccc---------------------ccccccccccccc-------
Confidence            456788888887654  4444446666777766654421                     0000011122222       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ++|..++.   .|+ .|++|-.+|.+.+|....+.....                                    
T Consensus       106 -----~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss------------------------------------  140 (412)
T KOG3881|consen  106 -----KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSS------------------------------------  140 (412)
T ss_pred             -----ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence                 67888876   565 788888899999999875532100                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cC--CeEEEEEccCCCceeeeeecCCC--c
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DD--LRINLWNLEISDQCFNIVDMKPS--N  262 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d--~~i~lwd~~~~~~~~~~~~~~~~--~  262 (409)
                                          ++..  ......+..|.-++..+.++ +| ..  ..+.+||++..   .+++..+..  .
T Consensus       141 --------------------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD  195 (412)
T KOG3881|consen  141 --------------------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPND  195 (412)
T ss_pred             --------------------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCc
Confidence                                0000  11123455566666655554 46 66  78999999843   333333211  1


Q ss_pred             CcCc--cCceEEEEEeCC--CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290          263 MDDL--TEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (409)
Q Consensus       263 ~~~~--~~~v~~~~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  338 (409)
                      ..+.  .-+++++.|-+.  . ..|++++.-+.+++||.+.++-..   ..+..             -..+++++...|+
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV---~~fd~-------------~E~~is~~~l~p~  258 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV---AQFDF-------------LENPISSTGLTPS  258 (412)
T ss_pred             cccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce---eEecc-------------ccCcceeeeecCC
Confidence            1111  246788899887  5 899999999999999999765322   22221             1458999999999


Q ss_pred             CCEEEEeec-CeEEEEEccCCCcceEE-EecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          339 GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       339 g~~l~sg~~-~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+++++|.. +.+..+|++. ++.+.. +++..+.+               +++..+|.+++||+|+-|+.|
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyv  314 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYV  314 (412)
T ss_pred             CcEEEEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeE
Confidence            999999986 9999999996 666655 77777765               699999999999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=7.6e-11  Score=103.16  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             ccCceEEEEEeCCCCCEEEE--EeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ..++|+++.|+|++ +-|+.  |-.--.+.|||++..-       ++.. .            .++-+++-|+|.|++|+
T Consensus       269 k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-------v~df-~------------egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-------VFDF-P------------EGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             CCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-------eEeC-C------------CCCccceEECCCCCEEE
Confidence            46899999999999 65554  4456689999998742       2222 1            35678899999999988


Q ss_pred             Eee--c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          344 SRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       344 sg~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      .++  .  |.+.|||+.. .+++..+......                 -+.|+|||++++|++.-
T Consensus       328 lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEcCCCcEEEEEecc
Confidence            653  3  9999999986 7888888766653                 69999999999988753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.49  E-value=5.6e-12  Score=119.55  Aligned_cols=194  Identities=15%  Similarity=0.249  Sum_probs=127.3

Q ss_pred             eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc
Q 015290           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (409)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (409)
                      ...+..+..|+            ..|..++.. ++++.+|++||.||+|++|+...-.....                  
T Consensus      1038 G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------ 1086 (1431)
T KOG1240|consen 1038 GILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------ 1086 (1431)
T ss_pred             ceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc------------------
Confidence            44566667777            788888886 46668999999999999999864211100                  


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (409)
                                                         ...+..++ ......+.++...+.++.+|.+ .||.|.+.++...
T Consensus      1087 -----------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1087 -----------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred             -----------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence                                               01122222 2355678899999999999999 9999999999831


Q ss_pred             -CceeeeeecCCCcCcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          250 -DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       250 -~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                       .........+..........|..-+|...... .++.+..-+.|..||+++....    ...+.   .        .-.
T Consensus      1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----w~lk~---~--------~~h 1195 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----WRLKN---Q--------LRH 1195 (1431)
T ss_pred             ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----Hhhhc---C--------ccc
Confidence             11111111111112222233334444433323 7888888899999999885421    11111   0        013


Q ss_pred             cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEec
Q 015290          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +.|++++.+|.+++++.|+. |.+.+||++. +.++..+..
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEH 1235 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccC
Confidence            68999999999999999986 9999999996 677766653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=9.3e-10  Score=97.68  Aligned_cols=269  Identities=10%  Similarity=0.096  Sum_probs=154.9

Q ss_pred             CCcEEEEEECCCCCEEEEEec----CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ......++++|++++|.+...    +|.|..|++.....                       ..+.+.......      
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------   86 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------   86 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence            345677899999999988876    57899999876421                       111222222111      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCC-ceeeeeec-cCCCcccccccccccccCceeccCCCCCce
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                            .....++.  ++++++|+++. .++.|.++++.. +.+..... ...... ............-.+..++++.+
T Consensus        87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~~rq~~~h~H~v~~~pdg~~  157 (345)
T PF10282_consen   87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNPDRQEGPHPHQVVFSPDGRF  157 (345)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESSTTTTSSTCEEEEEE-TTSSE
T ss_pred             ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCcccccccccceeEEECCCCCE
Confidence                  34567888  79999999886 589999999986 44433211 000000 00000011122233445566665


Q ss_pred             eecccccccceeEEEecCCccc-ceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccC-CCce--eeeeec
Q 015290          185 GYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQC--FNIVDM  258 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~-~~~~--~~~~~~  258 (409)
                      ++..... ...|.+++++.... -.....+........+.++|+|++++++..  .++.|.++++.. .+..  +..+..
T Consensus       158 v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~  236 (345)
T PF10282_consen  158 VYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST  236 (345)
T ss_dssp             EEEEETT-TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEEecC-CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence            5554432 33788888865431 111222213445567899999999988765  789999999882 2221  222221


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCC--ccccccccccccccccccCCcccccccccceeeeEe
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                      .+....+ ......++++|+| ++|+++ ...+.|.+|++..  +.+  ..+..+..             .....+.+++
T Consensus       237 ~~~~~~~-~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l--~~~~~~~~-------------~G~~Pr~~~~  299 (345)
T PF10282_consen  237 LPEGFTG-ENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTL--TLVQTVPT-------------GGKFPRHFAF  299 (345)
T ss_dssp             CETTSCS-SSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTE--EEEEEEEE-------------SSSSEEEEEE
T ss_pred             ccccccc-cCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCce--EEEEEEeC-------------CCCCccEEEE
Confidence            1111111 2367899999999 665554 4577899999843  332  11111111             0234788999


Q ss_pred             ccCCCEEEEee-c-CeEEEEEcc
Q 015290          336 ANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       336 s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      +|+|++|+++. + +.|.+|++.
T Consensus       300 s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eCCCCEEEEEecCCCeEEEEEEe
Confidence            99999999886 4 899999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.48  E-value=7.9e-13  Score=104.63  Aligned_cols=170  Identities=14%  Similarity=0.218  Sum_probs=120.9

Q ss_pred             CCCcEEEEEECC-CCC--EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           31 DVDIVSAIEFDK-TGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        31 h~~~v~~v~~~~-~~~--~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+.+.|..+.- +++  +|+.|-.+|.|.+||+.++...         +.        .+..++.......|+      
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~---------~~--------~~~~~kv~~~~ash~------  205 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI---------IQ--------LPQSSKVESPNASHK------  205 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee---------ec--------cccccccccchhhcc------
Confidence            456777777544 343  4566779999999999987431         00        011222333445666      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ++|.++.|.  +....=++++.+..+..|.++.........                                 
T Consensus       206 ------qpvlsldya--s~~~rGisgga~dkl~~~Sl~~s~gslq~~---------------------------------  244 (323)
T KOG0322|consen  206 ------QPVLSLDYA--SSCDRGISGGADDKLVMYSLNHSTGSLQIR---------------------------------  244 (323)
T ss_pred             ------Ccceeeeec--hhhcCCcCCCccccceeeeeccccCccccc---------------------------------
Confidence                  899999994  443344677777888888886432111100                                 


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                              .+..-....|..+.+-||++.+|++ .|++|++|..+ +..++.+       +.-|
T Consensus       245 ------------------------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr-tl~pLAV-------LkyH  292 (323)
T KOG0322|consen  245 ------------------------KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR-TLNPLAV-------LKYH  292 (323)
T ss_pred             ------------------------ceEEecCCCccceEEccCCcEEeecccCCcEEEEEec-cCCchhh-------hhhh
Confidence                                    0001123346788999999999999 99999999999 7777777       6889


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .+.|++++|+|+. .++|+++.|+.|.+|++
T Consensus       293 sagvn~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence            9999999999997 89999999999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=7.1e-11  Score=108.59  Aligned_cols=182  Identities=15%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+....|  +|||+.|+..+.+   ..|.+|++.+++...+.                                     
T Consensus       199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-------------------------------------  239 (430)
T PRK00178        199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-------------------------------------  239 (430)
T ss_pred             CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------------------------
Confidence            67889999  8999999876544   36888888776543321                                     


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                               ...+.+...+|+|+|+.|+..  .++  .|++||+. ++....        +..+
T Consensus       240 -------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~  285 (430)
T PRK00178        240 -------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSR--------VTNH  285 (430)
T ss_pred             -------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEE--------cccC
Confidence                                     111223457899999988753  444  68888887 444332        2334


Q ss_pred             cCceEEEEEeCCCCCEEEEEe-CCC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ........|+|+| +.++..+ .+|  .|.++|+.+++.     ..+..           .  ........|+|||++|+
T Consensus       286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~-----~~lt~-----------~--~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRA-----ERVTF-----------V--GNYNARPRLSADGKTLV  346 (430)
T ss_pred             CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEeec-----------C--CCCccceEECCCCCEEE
Confidence            4455678999999 7666554 333  577778766542     11111           0  11234578999999998


Q ss_pred             Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ..+ .   ..|.+||+.+ ++ ...+... ...               ....|+|||+.|+..+.+
T Consensus       347 ~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~---------------~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLD---------------ESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EEEccCCceEEEEEECCC-CC-EEEccCC-CCC---------------CCceECCCCCEEEEEEec
Confidence            654 2   3688899875 43 3333221 111               257899999998876654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.4e-09  Score=90.71  Aligned_cols=278  Identities=12%  Similarity=0.153  Sum_probs=172.8

Q ss_pred             ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccC--CcCCCCccchhhhhhhcccccccC
Q 015290           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTS   87 (409)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   87 (409)
                      .|.+...-++........+....+-|+|+|++++|.++-.   +|.|--|.++.  ++..                    
T Consensus        20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--------------------   79 (346)
T COG2706          20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--------------------   79 (346)
T ss_pred             EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence            4777655456566666778889999999999999988764   47788888775  3321                    


Q ss_pred             CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCC-ceeeeeeccCCCccccccc
Q 015290           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSEN  165 (409)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  165 (409)
                           .+.....-.            .+-..++.  +++|++++++.. -|.|.++.++. |.+........        
T Consensus        80 -----~ln~~~~~g------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--------  132 (346)
T COG2706          80 -----FLNRQTLPG------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--------  132 (346)
T ss_pred             -----EeeccccCC------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeee--------
Confidence                 111111111            23477888  799999988854 47899998865 33322111000        


Q ss_pred             ccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEE
Q 015290          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINL  243 (409)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~l  243 (409)
                                                        ......  ..     ......+....+.|++++|++.  .-..|.+
T Consensus       133 ----------------------------------h~g~~p--~~-----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706         133 ----------------------------------HTGSGP--HE-----RQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             ----------------------------------cCCCCC--Cc-----cccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence                                              000000  00     1112236678899999999986  5668999


Q ss_pred             EEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCccc
Q 015290          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (409)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (409)
                      |++. .+.....-.   ..+ ......+.|.|+|++ ++..... .+++|-+|........   ...++.+..-|   ..
T Consensus       172 y~~~-dg~L~~~~~---~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP---~d  239 (346)
T COG2706         172 YDLD-DGKLTPADP---AEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLP---ED  239 (346)
T ss_pred             EEcc-cCccccccc---ccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCc---cc
Confidence            9998 554332211   112 234556899999999 7666554 5899999998874111   12222211111   11


Q ss_pred             ccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcceEEEec---ccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          323 FTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       323 ~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                      |.+ ..+...+.++|||++|.++.-  ..|-+|.+...+..+.....   +... +              +.+.|+|+|+
T Consensus       240 F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~-P--------------R~F~i~~~g~  303 (346)
T COG2706         240 FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF-P--------------RDFNINPSGR  303 (346)
T ss_pred             cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC-C--------------ccceeCCCCC
Confidence            221 346778899999999999863  89999988765444443332   2221 1              5899999999


Q ss_pred             eEEEcccCC
Q 015290          398 HFATGSYRR  406 (409)
Q Consensus       398 ~l~s~s~dg  406 (409)
                      +|+++..++
T Consensus       304 ~Liaa~q~s  312 (346)
T COG2706         304 FLIAANQKS  312 (346)
T ss_pred             EEEEEccCC
Confidence            999988775

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.3e-10  Score=104.09  Aligned_cols=114  Identities=16%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             eeEEEeCCCCCeEEEe--cCCeEEEEEccC--CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEE
Q 015290          221 INSISNNSDCETFVSA--DDLRINLWNLEI--SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVR  293 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~  293 (409)
                      ....+|+|||+.|+..  .+|...+|.+..  .+.....       +..+...+....|+||| +.|+..+.+   ..|.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~  354 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC  354 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence            3567999999988764  566555554431  1222222       23334556788999999 877766543   3689


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ec---CeEEEEEccCCCcc
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---MNLKLWDIRMDSTP  361 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~---~~v~iwd~~~~~~~  361 (409)
                      +||+.+++.     ..+..             ....+....|+|||++|+.. ..   ..|++||+.. ++.
T Consensus       355 v~dl~~g~~-----~~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~  407 (428)
T PRK01029        355 VYDLATGRD-----YQLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKT  407 (428)
T ss_pred             EEECCCCCe-----EEccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE
Confidence            999988753     22221             01245678999999988743 22   6788999874 443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=3e-09  Score=94.47  Aligned_cols=249  Identities=11%  Similarity=0.123  Sum_probs=141.5

Q ss_pred             cceEEEEEEecCCCCEEEEEeC----CCeEEEEEcCC--ceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~----d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      .....+++  ++++++|+++..    ++.|..|++..  +.+..+....           ...........++++.+++.
T Consensus        37 ~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-----------~~g~~p~~i~~~~~g~~l~v  103 (345)
T PF10282_consen   37 ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-----------SGGSSPCHIAVDPDGRFLYV  103 (345)
T ss_dssp             SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-----------ESSSCEEEEEECTTSSEEEE
T ss_pred             CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-----------cCCCCcEEEEEecCCCEEEE
Confidence            45667888  789999998865    57999998876  4444432211           01122223333444555444


Q ss_pred             ccccccceeEEEecCCc-ccceeeeeec---------cccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeee
Q 015290          188 LEWTENMATKIANVGNS-VHARCQKVYP---------HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI  255 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~---------~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~  255 (409)
                      +.. .++.+.++++... ........+.         ........++.++|+++++++.  ....|.+|++......+..
T Consensus       104 any-~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~  182 (345)
T PF10282_consen  104 ANY-GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP  182 (345)
T ss_dssp             EET-TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred             EEc-cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence            432 2667888888753 2222221110         1123456789999999988886  6678999999833321211


Q ss_pred             -eecCCCcCcCccCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCC--CccccccccccccccccccCCccccccccccee
Q 015290          256 -VDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       256 -~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                       ..+.   + ......+.+.|+|++ +++ +....++.|.++++.  .+..  ........   .+.   .+.+ .....
T Consensus       183 ~~~~~---~-~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~---~~~---~~~~-~~~~~  248 (345)
T PF10282_consen  183 VDSIK---V-PPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSL--TEIQTIST---LPE---GFTG-ENAPA  248 (345)
T ss_dssp             EEEEE---C-STTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEES---CET---TSCS-SSSEE
T ss_pred             eeccc---c-ccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCce--eEEEEeee---ccc---cccc-cCCce
Confidence             1111   2 233557899999999 655 455678899999988  3321  11111111   000   0000 12577


Q ss_pred             eeEeccCCCEEEEee-c-CeEEEEEccCC-Cc--ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          332 DIKFANDGQHLLSRD-Y-MNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       332 ~~~~s~~g~~l~sg~-~-~~v~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      .++++|||++|.++. . +.|.+|+++.. ++  .+..+...... +              +.++++|+|++|+++..+
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-P--------------r~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-P--------------RHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-E--------------EEEEE-TTSSEEEEEETT
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-c--------------cEEEEeCCCCEEEEEecC
Confidence            899999999999875 3 99999999432 22  22333322221 1              689999999999987654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.1e-10  Score=106.90  Aligned_cols=182  Identities=14%  Similarity=0.158  Sum_probs=110.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC-C--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND-K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+..|  +|||+.|+..+.+ +  .|.+||+.+++...+..                                    
T Consensus       218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------------------------  259 (448)
T PRK04792        218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------------------------  259 (448)
T ss_pred             CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------------------------------------
Confidence            57888999  8999998876543 2  57778887665432211                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                ..+.....+|+|||+.|+..  .++.  |+++|+. .+....        +..+
T Consensus       260 --------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~  304 (448)
T PRK04792        260 --------------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRH  304 (448)
T ss_pred             --------------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccC
Confidence                                      11122357899999988753  5664  7777876 443322        2334


Q ss_pred             cCceEEEEEeCCCCCEEEEEe-CCC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .......+|+|+| +.|+..+ .++  .|.++|+.+++.     ..+..           .  .......+|+|||++|+
T Consensus       305 ~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~-----~~Lt~-----------~--g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        305 RAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKV-----SRLTF-----------E--GEQNLGGSITPDGRSMI  365 (448)
T ss_pred             CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEEec-----------C--CCCCcCeeECCCCCEEE
Confidence            4456788999999 7666554 334  466667766542     11111           0  11234578999999988


Q ss_pred             Eee-c-C--eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          344 SRD-Y-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       344 sg~-~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ..+ . +  .|.++|+.. ++ ...+.... ..               ....|+|||++|+..+.+
T Consensus       366 ~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d---------------~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        366 MVNRTNGKFNIARQDLET-GA-MQVLTSTR-LD---------------ESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             EEEecCCceEEEEEECCC-CC-eEEccCCC-CC---------------CCceECCCCCEEEEEEec
Confidence            654 2 4  556677764 33 33333221 11               256899999988766544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=3.1e-12  Score=109.06  Aligned_cols=202  Identities=11%  Similarity=0.100  Sum_probs=143.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      -....+.+  +.+|.+|+.++..|.+..+|..++++...+..  ...+..            +.+-...++++.+.   .
T Consensus       130 FGPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--~Etv~D------------v~~LHneq~~AVAQ---K  190 (545)
T KOG1272|consen  130 FGPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--METVRD------------VTFLHNEQFFAVAQ---K  190 (545)
T ss_pred             cCCeeeee--cCCccEEEecCCccceeeeecccceeeeeeeh--hhhhhh------------hhhhcchHHHHhhh---h
Confidence            34567888  79999999999999999999999887654331  111112            22222223333332   4


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                      ..+.+||-.. .+-.|++     ....|..+.|-|..-+|+++ ..|.+..-|+. .++.+..       +....+.+..
T Consensus       191 ~y~yvYD~~G-tElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~-------~~t~~G~~~v  256 (545)
T KOG1272|consen  191 KYVYVYDNNG-TELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVAS-------IRTGAGRTDV  256 (545)
T ss_pred             ceEEEecCCC-cEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHH-------HHccCCccch
Confidence            4667777544 2223433     22567889999988778888 89999999999 7776655       3445567888


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEE
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  351 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~  351 (409)
                      ++-+|-+ ..+-+|...|+|.+|...+.+..    ..+-             .|.++|.++++.++|+|+||.+ |..++
T Consensus       257 m~qNP~N-aVih~GhsnGtVSlWSP~skePL----vKiL-------------cH~g~V~siAv~~~G~YMaTtG~Dr~~k  318 (545)
T KOG1272|consen  257 MKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL----VKIL-------------CHRGPVSSIAVDRGGRYMATTGLDRKVK  318 (545)
T ss_pred             hhcCCcc-ceEEEcCCCceEEecCCCCcchH----HHHH-------------hcCCCcceEEECCCCcEEeeccccccee
Confidence            8889988 89999999999999998776542    2222             2478999999999999999876 69999


Q ss_pred             EEEccCCCcceEEEec
Q 015290          352 LWDIRMDSTPVATFKI  367 (409)
Q Consensus       352 iwd~~~~~~~~~~~~~  367 (409)
                      |||+++ ...+.++..
T Consensus       319 IWDlR~-~~ql~t~~t  333 (545)
T KOG1272|consen  319 IWDLRN-FYQLHTYRT  333 (545)
T ss_pred             Eeeecc-ccccceeec
Confidence            999997 444444443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=5.5e-12  Score=123.73  Aligned_cols=199  Identities=19%  Similarity=0.326  Sum_probs=145.1

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ...+-..|.++.=+|...+.+||+.||.|++|....++.                           +..++.-.      
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---------------------------v~~~rt~g------ 2250 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---------------------------VVCFRTAG------ 2250 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------------EEEeeccC------
Confidence            333567899999999889999999999999999876653                           22222111      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                           +..|+.+.|  +..|..+..+..||.+.+|.+...-.   .                                  
T Consensus      2251 -----~s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~---~---------------------------------- 2286 (2439)
T KOG1064|consen 2251 -----NSRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPY---T---------------------------------- 2286 (2439)
T ss_pred             -----cchhhhhhh--cccCCceeeeccCCceeecccCCcce---e----------------------------------
Confidence                 058999999  68999999999999999998872211   0                                  


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe----cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                                              .. +.|......+.|-.  ..++++    .++.+.+||.-......-+       -
T Consensus      2287 ------------------------s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~ 2332 (2439)
T KOG1064|consen 2287 ------------------------SW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------H 2332 (2439)
T ss_pred             ------------------------cc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------e
Confidence                                    01 45666667777754  445552    5789999998733322222       3


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ..|.+.++++++.|.. ++|++|+.+|.|++||++..++.    +.+..                      +. ...+++
T Consensus      2333 ~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~----------------------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA----------------------LD-TREYFV 2384 (2439)
T ss_pred             eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh----------------------hh-hhheee
Confidence            6799999999999998 99999999999999999886541    22211                      33 456888


Q ss_pred             Eeec-CeEEEEEccCCCcceEEEe
Q 015290          344 SRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       344 sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      +|+. |.++||++.. -..+..+.
T Consensus      2385 ~~ss~g~ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred             ccCcccceEEEEccc-cchhhcCc
Confidence            9975 9999999985 45565554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.1e-09  Score=89.70  Aligned_cols=203  Identities=11%  Similarity=0.133  Sum_probs=133.8

Q ss_pred             cceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCC--ceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      +.++-|+|  +++++.|.++..   +|.|.-|.++.  |.+...-.                                  
T Consensus        40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~----------------------------------   83 (346)
T COG2706          40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR----------------------------------   83 (346)
T ss_pred             CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----------------------------------
Confidence            67889999  789989988844   46777777664  44333211                                  


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                   .            .....+...+++++++++++++  ..|.|.++-++..+.....+.     ...|
T Consensus        84 -------------~------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h  133 (346)
T COG2706          84 -------------Q------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKH  133 (346)
T ss_pred             -------------c------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeec
Confidence                         0            1122233789999999999998  789999999985555444322     1223


Q ss_pred             cCc----------eEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          267 TEV----------ITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       267 ~~~----------v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                      .+.          +....+.|++ ++|++... --.|.+|++..+++.......+..              ....+-+.|
T Consensus       134 ~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~F  198 (346)
T COG2706         134 TGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVF  198 (346)
T ss_pred             CCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC--------------CCCcceEEE
Confidence            332          7889999999 88888753 236899999988764332222222              356788999


Q ss_pred             ccCCCEEEEeec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          336 ANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       336 s~~g~~l~sg~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +|++++.....+  ++|.+|........+..++.+....    ..|....-  .-.+..+|||++|.++.
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~g~~~--~aaIhis~dGrFLYasN  262 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFTGTNW--AAAIHISPDGRFLYASN  262 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccCCCCc--eeEEEECCCCCEEEEec
Confidence            999999888875  9999999975334444444332221    11111111  14789999999987654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=1.4e-09  Score=96.40  Aligned_cols=200  Identities=14%  Similarity=0.148  Sum_probs=125.9

Q ss_pred             CEEE-EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290           45 DYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (409)
Q Consensus        45 ~~la-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (409)
                      ++++ +-..+|.|.|.|..+.+                           .+..+....            +.-..+.|  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~---------------------------~~~~i~~~~------------~~h~~~~~--   44 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNK---------------------------VVARIPTGG------------APHAGLKF--   44 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-S---------------------------EEEEEE-ST------------TEEEEEE---
T ss_pred             cEEEEEecCCCEEEEEECCCCe---------------------------EEEEEcCCC------------CceeEEEe--
Confidence            4454 45578999999988766                           345555433            23345667  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (409)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (409)
                      ++||+++++++.|+.|.++|+.+++......                                                 
T Consensus        45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-------------------------------------------------   75 (369)
T PF02239_consen   45 SPDGRYLYVANRDGTVSVIDLATGKVVATIK-------------------------------------------------   75 (369)
T ss_dssp             TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------------------------------------------
T ss_pred             cCCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------------------------------------------
Confidence            8999999999999999999999987655432                                                 


Q ss_pred             cccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCC
Q 015290          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (409)
Q Consensus       204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  281 (409)
                                 .  ......+++++||++++++  ..+.+.++|.+ +.+.++.+.............+.++..+|..+.
T Consensus        76 -----------~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~  141 (369)
T PF02239_consen   76 -----------V--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE  141 (369)
T ss_dssp             --------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred             -----------c--CCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCE
Confidence                       1  1234679999999999987  79999999998 677777654332222224456788888898823


Q ss_pred             EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCC
Q 015290          282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS  359 (409)
Q Consensus       282 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~  359 (409)
                      ++++.-..+.|.+.|....+..  ..+.+..              ........|+|+++|++.+. . +.|-++|..+ +
T Consensus       142 fVv~lkd~~~I~vVdy~d~~~~--~~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~  204 (369)
T PF02239_consen  142 FVVNLKDTGEIWVVDYSDPKNL--KVTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-G  204 (369)
T ss_dssp             EEEEETTTTEEEEEETTTSSCE--EEEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-T
T ss_pred             EEEEEccCCeEEEEEecccccc--ceeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-c
Confidence            4444445588888887664321  0112222              23567889999999988764 3 8999999875 5


Q ss_pred             cceEEE
Q 015290          360 TPVATF  365 (409)
Q Consensus       360 ~~~~~~  365 (409)
                      +.+..+
T Consensus       205 k~v~~i  210 (369)
T PF02239_consen  205 KLVALI  210 (369)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            544443

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.36  E-value=1.2e-10  Score=93.99  Aligned_cols=120  Identities=17%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             cccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          215 HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      +.|+.+....+|+... +.+.+| +|+.+..||++.++..+..      ...-|...|.++.-+|..+.++++|+.|..|
T Consensus       162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeecceEEEecCCCCCceEEEeccccce
Confidence            6788888989997653 577788 9999999999965554432      1356888999999998777999999999999


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC--EEEEeecCeEEEEEccC
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~sg~~~~v~iwd~~~  357 (409)
                      ++||.|+-..     .++..            .-.+.|+.+.++|.-.  .|+++-.+..+|-+...
T Consensus       236 ~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  236 RVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             eeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence            9999996332     11211            0136899999999643  34444346677777653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=8.4e-11  Score=96.83  Aligned_cols=293  Identities=11%  Similarity=0.144  Sum_probs=162.7

Q ss_pred             CCCcEEEEEECCCCC--EEEEEecCCeEEEEeccCCcCCCCccc---------hhhhhhhcccccccCCCceeeeeee-c
Q 015290           31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHI---------SRSELEKQMDFTSTSHPEYRYKTEF-Q   98 (409)
Q Consensus        31 h~~~v~~v~~~~~~~--~la~~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~   98 (409)
                      -..+|..+.|.+++.  .++..+.|.+|++|.+......+ .+.         .+..|+.+.-.-.....++.+.+.+ .
T Consensus        83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            467899999999664  56667789999999987654321 000         0000000000000001123333333 3


Q ss_pred             CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc----eeeeeeccCCCcccccccccccccCce
Q 015290           99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----KVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus        99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                      +|.            --|++|.+  +.|++.++++. |=.|.+|++.-.    .++-+...++..         ....+.
T Consensus       162 aHt------------yhiNSIS~--NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEe---------LteVIT  217 (433)
T KOG1354|consen  162 AHT------------YHINSISV--NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEE---------LTEVIT  217 (433)
T ss_pred             cce------------eEeeeeee--cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHH---------HHHHHh
Confidence            455            68999999  68887777654 667999988622    112111111100         001111


Q ss_pred             eccCCCCC-ceeecccccccceeEEEecCCcccc------------eeeeeeccccccceeEEEeCCCCCeEEEecCCeE
Q 015290          175 NEHNPPSF-AHGYHLEWTENMATKIANVGNSVHA------------RCQKVYPHAHDFNINSISNNSDCETFVSADDLRI  241 (409)
Q Consensus       175 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i  241 (409)
                      +.-++|.. .++.+.  ...|+|++-|+......            ..-+.++.+--..|..+.|+++|+++++-+--+|
T Consensus       218 saEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltv  295 (433)
T KOG1354|consen  218 SAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTV  295 (433)
T ss_pred             hhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecccee
Confidence            12222221 112222  23789999999742211            1122233444567889999999999999877899


Q ss_pred             EEEEccCCCceeeeeecCCCcCcC-----ccCc---eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccc
Q 015290          242 NLWNLEISDQCFNIVDMKPSNMDD-----LTEV---ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (409)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~-----~~~~---v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  313 (409)
                      ++||+.....++.++.+...-...     ..+.   -..++|+-++ .++++|+..+.+++++...|.....   .+...
T Consensus       296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~---tl~as  371 (433)
T KOG1354|consen  296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDF---TLEAS  371 (433)
T ss_pred             EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCcceee---ccccc
Confidence            999997666666664332110000     0111   2467899888 8999999999999999665532111   01100


Q ss_pred             ccccCCccc--------------------ccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290          314 AESHGSKSF--------------------FTEIIASISDIKFANDGQHLLSRDYMNLKLWD  354 (409)
Q Consensus       314 ~~~~~~~~~--------------------~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd  354 (409)
                      .....++..                    --+....+...+|+|..+.+|.+..+.++||.
T Consensus       372 r~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~  432 (433)
T KOG1354|consen  372 RKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ  432 (433)
T ss_pred             ccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence            000000000                    01123456677999999999988777777763

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.33  E-value=1.3e-09  Score=86.99  Aligned_cols=158  Identities=13%  Similarity=0.029  Sum_probs=101.5

Q ss_pred             eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      +.+++++++++++++. ....|..|.+...++.+..+..     ....+.-.+..|+... ..||++..||++.|||+|.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence            6789999999999987 8889999999844443322211     2222334578899888 8999999999999999998


Q ss_pred             ccccccccccccccccccCCcccccccccceeeeEeccCCC--EEEEeec-CeEEEEEccCCCcceEEEecccCcccccc
Q 015290          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (409)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  376 (409)
                      ......    ..        .+....|.+.+..+.|++-|.  +|..... +.+.+.|++. ++-.+.+.-....     
T Consensus       235 ~~tpm~----~~--------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~-----  296 (344)
T KOG4532|consen  235 MATPMA----EI--------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDV-----  296 (344)
T ss_pred             cccchh----hh--------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCccc-----
Confidence            543211    11        111234688999999998763  4444444 9999999986 5444443322221     


Q ss_pred             cccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          377 DLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                        +-+...+.++...|+.++.-+.+.++
T Consensus       297 --~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  297 --ERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             --cccccccccccccccCCCcccccccc
Confidence              11111222356777766655544443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.7e-09  Score=94.79  Aligned_cols=277  Identities=13%  Similarity=0.147  Sum_probs=153.9

Q ss_pred             CcEEEEEECCCCCEEEEEec-----------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCC
Q 015290           33 DIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (409)
                      ..|.-+.|||..+||+|-+.           ...++|||+.++...                           +.|..-.
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rsF~~~~  302 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RSFPVIK  302 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cceeccC
Confidence            35889999999999998652           147999999998742                           2222111


Q ss_pred             ccccccccceeccceEE-EEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC
Q 015290          102 PEFDYLKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (409)
Q Consensus       102 ~~~~~~~~~~~~~~v~~-l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (409)
                      .          ...++. ..|  |.|++++|--.. ..|.|++...-.+........             ..+....++|
T Consensus       303 ~----------~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki-------------~gIr~FswsP  356 (698)
T KOG2314|consen  303 S----------PYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI-------------SGIRDFSWSP  356 (698)
T ss_pred             C----------CccccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCC-------------ccccCcccCC
Confidence            0          012332 468  789999887666 568888865532221111100             1111222333


Q ss_pred             CCceeecccccccc---eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-------C---CeEEEEEc
Q 015290          181 SFAHGYHLEWTENM---ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-------D---LRINLWNL  246 (409)
Q Consensus       181 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-------d---~~i~lwd~  246 (409)
                      ...++++-.--.+.   .+.+-.+..   .+.+++- +-+.-.=..|.|..+|.+|+.- .       .   ..+.|+.+
T Consensus       357 ~~~llAYwtpe~~~~parvtL~evPs---~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  357 TSNLLAYWTPETNNIPARVTLMEVPS---KREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             CcceEEEEcccccCCcceEEEEecCc---cceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            33333322221111   122222211   1222211 1111111346677788888762 1       1   13556666


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---CCeEEEEeCCCccccccccccccccccccCCcccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (409)
                      +...-++..+        .....|...+|.|.| ..|++-+.   ..++.+|.+.+.......++.+..           
T Consensus       433 reKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-----------  492 (698)
T KOG2314|consen  433 REKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-----------  492 (698)
T ss_pred             eccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc-----------
Confidence            6333334332        234678999999999 66665442   357888888753222222333333           


Q ss_pred             cccccceeeeEeccCCCEEEEee---c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290          324 TEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (409)
Q Consensus       324 ~~~~~~i~~~~~s~~g~~l~sg~---~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  399 (409)
                          ...+.+.|+|.|++++.+.   . |.+.++|.....-.......|...                +.+.|.|.|+|+
T Consensus       493 ----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a----------------t~veWDPtGRYv  552 (698)
T KOG2314|consen  493 ----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA----------------TEVEWDPTGRYV  552 (698)
T ss_pred             ----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc----------------ccceECCCCCEE
Confidence                3567899999999998763   3 899999987311111122233333                589999999999


Q ss_pred             EEcccCC
Q 015290          400 ATGSYRR  406 (409)
Q Consensus       400 ~s~s~dg  406 (409)
                      ++++.-.
T Consensus       553 vT~ss~w  559 (698)
T KOG2314|consen  553 VTSSSSW  559 (698)
T ss_pred             EEeeehh
Confidence            9988643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.33  E-value=8.9e-11  Score=103.42  Aligned_cols=195  Identities=15%  Similarity=0.137  Sum_probs=137.0

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (409)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (409)
                      +...++|....||.+++|+...++....+.....                               ....++-..|.+...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-------------------------------~s~t~~~~~w~L~~~   51 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-------------------------------LSGTCTYTKWGLSAD   51 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchh-------------------------------ccCcceeEEEEEEec
Confidence            5567999999999999999998877654321110                               001112223332111


Q ss_pred             ccceeeeeeccccccceeEEE----eCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCC
Q 015290          205 VHARCQKVYPHAHDFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (409)
Q Consensus       205 ~~~~~~~~~~~~~~~~v~~l~----~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (409)
                      .  .|.         ...++.    -+.+...++-| ..|.|.+|++. .++....+     .-..|.+.|.++.++.+-
T Consensus        52 ~--s~~---------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~  114 (541)
T KOG4547|consen   52 Y--SPM---------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL  114 (541)
T ss_pred             c--chH---------HHHhHHHHhhccCCceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc
Confidence            1  111         111111    12344566678 99999999998 56555443     136799999999999887


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCC
Q 015290          280 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS  359 (409)
Q Consensus       280 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~  359 (409)
                       ..|.+++.|+.+..|+......    ++.+...             ...+.+++.+|||..+++++ ++|++||+.+ +
T Consensus       115 -~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~-------------~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-k  174 (541)
T KOG4547|consen  115 -GCIYSVGADLKVVYILEKEKVI----IRIWKEQ-------------KPLVSSLCISPDGKILLTAS-RQIKVLDIET-K  174 (541)
T ss_pred             -CceEecCCceeEEEEeccccee----eeeeccC-------------CCccceEEEcCCCCEEEecc-ceEEEEEccC-c
Confidence             8999999999999999988664    3555541             34688999999999999998 8999999986 9


Q ss_pred             cceEEEecccCcccccccccCCCCccceeeEEEcCC-----CCeEEEc
Q 015290          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GLHFATG  402 (409)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-----g~~l~s~  402 (409)
                      +.+..|.+|.+++               .+++|--+     |.++.++
T Consensus       175 evv~~ftgh~s~v---------------~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  175 EVVITFTGHGSPV---------------RTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             eEEEEecCCCcce---------------EEEEEEEeccccccceeeec
Confidence            9999999999987               46777665     5665543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=5.7e-11  Score=102.13  Aligned_cols=265  Identities=15%  Similarity=0.164  Sum_probs=165.8

Q ss_pred             eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (409)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (409)
                      ++...|.+|.            +.|..|.|  +..|..|++++.|..|.+||...+.....+...+...+....|.+.. 
T Consensus       133 ~l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-  197 (559)
T KOG1334|consen  133 RLQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-  197 (559)
T ss_pred             hhhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-
Confidence            4455677787            99999999  68999999999999999999987765544433222222111121111 


Q ss_pred             CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCC
Q 015290          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~  249 (409)
                              +...+..+   ..||.+++-.+.........+. +..|.++|.-++.-|+. ..|.++ .|+.+.-+|++. 
T Consensus       198 --------~d~ti~~~---s~dgqvr~s~i~~t~~~e~t~r-l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~-  264 (559)
T KOG1334|consen  198 --------GDRTIVTS---SRDGQVRVSEILETGYVENTKR-LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ-  264 (559)
T ss_pred             --------CCcCceec---cccCceeeeeeccccceeccee-cccccCccceeeecCCCCCcccccccccceeeeeecc-
Confidence                    11111111   2377777766644322222222 26799999999999975 445666 999999999984 


Q ss_pred             CceeeeeecCCCcCcCcc---CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc--cccccccccccccCCccccc
Q 015290          250 DQCFNIVDMKPSNMDDLT---EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--HSARILRDAAESHGSKSFFT  324 (409)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  324 (409)
                      +.....+..+    ..+.   -..++++.+|.....|++|+.|-.+++||.+.-....  ..+..+..|       ....
T Consensus       265 ~~pa~~~~cr----~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-------hl~~  333 (559)
T KOG1334|consen  265 DVPAEKFVCR----EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-------HLVE  333 (559)
T ss_pred             CCccceeeee----ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc-------cccc
Confidence            3332222111    1122   2578899999986799999999999999988633210  001111111       1111


Q ss_pred             ccccceeeeEeccCC-CEEEEeecCeEEEEEccCC-C----------cceE-EEecccCcccccccccCCCCccceeeEE
Q 015290          325 EIIASISDIKFANDG-QHLLSRDYMNLKLWDIRMD-S----------TPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (409)
Q Consensus       325 ~~~~~i~~~~~s~~g-~~l~sg~~~~v~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (409)
                      .....|++++++.++ .+|++-.|-.|+++.-... +          ..+. .+++|.+...             |-.+-
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVN  400 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVN  400 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceee
Confidence            223579999999765 6777778899999964431 2          2223 3777776532             12343


Q ss_pred             -EcCCCCeEEEcccCCCC
Q 015290          392 -VSGDGLHFATGSYRRDN  408 (409)
Q Consensus       392 -~spdg~~l~s~s~dg~i  408 (409)
                       |-|...|+++||+-|.|
T Consensus       401 FfGPrsEyVvSGSDCGhI  418 (559)
T KOG1334|consen  401 FFGPRSEYVVSGSDCGHI  418 (559)
T ss_pred             eccCccceEEecCccceE
Confidence             55888999999988765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.32  E-value=3.9e-10  Score=93.01  Aligned_cols=203  Identities=10%  Similarity=0.176  Sum_probs=137.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      -..+++++.+.++...|++|-..|++.-+.+...-.                       .....+....|.         
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~---------  114 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ---------  114 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh---------
Confidence            367899999999999999999999998887654322                       112345567777         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|..+-|  +...+.+++.+.|+.+.---.+.+...--..                   +.+. .....+.....+
T Consensus       115 ---~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-------------------~~~~-~t~~~~d~~~~f  169 (404)
T KOG1409|consen  115 ---ARVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-------------------FETP-ASALQFDALYAF  169 (404)
T ss_pred             ---cceeeEEe--cCCceeEEEeccccceEEEeeccCCcccceE-------------------eecc-CCCCceeeEEEE
Confidence               89999999  6777899999999877544343332211110                   0000 000011111111


Q ss_pred             --cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          191 --TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       191 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                        ...+.+..-.+... ....+..+ .+|.+.+.+++|.|....|.+| .|..+.+||+. .+.-...      ++.+|.
T Consensus       170 vGd~~gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~  240 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHN  240 (404)
T ss_pred             ecccccceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccch
Confidence              11223333332221 12344444 8999999999999999999999 99999999998 3332222      268899


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      ..|..+...+.- +.+.+++.||.|.+||+...
T Consensus       241 ~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  241 DKVQALSYAQHT-RQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhhhhh-eeeeeccCCCeEEEEeccce
Confidence            999999988887 89999999999999998763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.32  E-value=1.2e-09  Score=94.81  Aligned_cols=280  Identities=12%  Similarity=0.129  Sum_probs=158.4

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .-++..+.|||.|.+|++....| |.+|+......                           +..+ -|           
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~---------------------------l~~~-~~-----------   71 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK---------------------------LVRF-RH-----------   71 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchhh---------------------------eeee-ec-----------
Confidence            45788999999999999887654 89998775542                           1112 22           


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCC---------------CeEEEEEcCCceeeeeeccCCCcccc--cccccccccCce
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTND---------------KTIKLWKVRDQKVKKIKEMDHFPFVS--SENTLLAEKNFM  174 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  174 (409)
                        ..|..+.|  +|++++|.+-+..               +.+.+||+.++.+...+.....+...  -+.+...+....
T Consensus        72 --~~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A  147 (561)
T COG5354          72 --PDVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA  147 (561)
T ss_pred             --CCceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence              36888888  7899999885433               35899999999887766554443211  111111111111


Q ss_pred             eccCCC----------------------CCceeecccccccceeEEEecCCcccceeeeeeccccccc----------ee
Q 015290          175 NEHNPP----------------------SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN----------IN  222 (409)
Q Consensus       175 ~~~~~~----------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------v~  222 (409)
                      ....+.                      -..+..+... ....+..|-.+.......++++.-.....          =.
T Consensus       148 Rvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~  226 (561)
T COG5354         148 RVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV  226 (561)
T ss_pred             hhccCeEEEEecCCccccCchhhccccceeeEEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence            111100                      0000000000 01124555444332222222210111110          12


Q ss_pred             EEEeCCCCCeEEEe------------cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE--eC
Q 015290          223 SISNNSDCETFVSA------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SS  288 (409)
Q Consensus       223 ~l~~~~~~~~l~~~------------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~--s~  288 (409)
                      .+.|++.|++|+.-            ....++|++++  +..+.+       .....++|...+|.|.+ +.|++.  -.
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~  296 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYM  296 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeec--ccccce-------eccccccceeeeecccC-CceeEEeccc
Confidence            45667777766531            12345666665  222222       12456899999999998 655544  46


Q ss_pred             CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c---CeEEEEEccCCCcceEE
Q 015290          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVAT  364 (409)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~  364 (409)
                      +-.+.++|++.+-.     ..+.               ...=+.+.|+|.+++++.++ +   |.+-+||......++..
T Consensus       297 pa~~s~~~lr~Nl~-----~~~P---------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~  356 (561)
T COG5354         297 PASVSVFDLRGNLR-----FYFP---------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA  356 (561)
T ss_pred             ccceeecccccceE-----EecC---------------CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE
Confidence            77899999988521     1111               23456688999999988754 3   89999998632233445


Q ss_pred             EecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +.+....                 -+.|+|||+++.+..
T Consensus       357 ~~~~n~s-----------------~~~wspd~qF~~~~~  378 (561)
T COG5354         357 FNGLNTS-----------------YCDWSPDGQFYDTDT  378 (561)
T ss_pred             eecCCce-----------------EeeccCCceEEEecC
Confidence            5555442                 578999998876654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=7.3e-11  Score=106.24  Aligned_cols=257  Identities=12%  Similarity=0.140  Sum_probs=165.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ......|++|+....|+|+|+.||.+++..+.+....       ...++..     .......-+++.||.         
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d-------~~~~gla-----a~snLsmNQtLeGH~---------   71 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD-------LNKSGLA-----AASNLSMNQTLEGHN---------   71 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCc-------ccccccc-----cccccchhhhhccCc---------
Confidence            3467899999999999999999999999988765421       0000000     011122335688999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|.-+.|  +.+.+.|-++..+|.|.+|-+-.+.......                                    
T Consensus        72 ---~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi------------------------------------  110 (1189)
T KOG2041|consen   72 ---ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------------------------------------  110 (1189)
T ss_pred             ---ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh------------------------------------
Confidence               89999999  6788899999999999999988775432111                                    


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                             .....+.|.+++|+.+|..++.. .||.|.+=.++  +..+.--     .+++  ..
T Consensus       111 -----------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgK-----eLkg--~~  158 (1189)
T KOG2041|consen  111 -----------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGK-----ELKG--QL  158 (1189)
T ss_pred             -----------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecch-----hcch--he
Confidence                                   03455678899999999999999 99999887776  2222110     0221  12


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc-cccccccccccccCCcccccccccceeeeEec--------cCCC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFA--------NDGQ  340 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------~~g~  340 (409)
                      ...+.|++|. ..++.+-..|.+++||...+=... ..-.....       ...+......|-.+.|.        ||-.
T Consensus       159 l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------tg~~s~~~~kia~i~w~~g~~~~v~pdrP  230 (1189)
T KOG2041|consen  159 LAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNG-------TGIFSNFPTKIAEIEWNTGPYQPVPPDRP  230 (1189)
T ss_pred             ccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEee-------eeeecCCCccccceeeccCccccCCCCCC
Confidence            3578999998 877788889999999976531100 00000111       11111111224444443        4666


Q ss_pred             EEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       341 ~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      .||.+-+ |.+.|.--..+..++-.-.+.                 .+..+.|+++|..||.++.|.
T Consensus       231 ~lavcy~nGr~QiMR~eND~~Pvv~dtgm-----------------~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  231 RLAVCYANGRMQIMRSENDPEPVVVDTGM-----------------KIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             EEEEEEcCceehhhhhcCCCCCeEEeccc-----------------EeecceecCCCcEEEEccCcc
Confidence            7777755 777776554433443322221                 125899999999999998774

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=5e-10  Score=98.79  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=93.8

Q ss_pred             cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      ..|.+.|+++.++.+-..|.++ .|+.+..|+.. ....++.       +......+.+++++||| .++++++  +.|+
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik  167 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK  167 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence            5789999999999888889998 99999999998 6666666       45666778999999999 9998876  5799


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEeccC-----CCEEEEeec--CeEEEEEccC
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY--MNLKLWDIRM  357 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~sg~~--~~v~iwd~~~  357 (409)
                      +||+.+++.    +..             |.+|.++|+++.|.-+     |.+++++..  ..+.+|-+..
T Consensus       168 ~~~~~~kev----v~~-------------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  168 VLDIETKEV----VIT-------------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEccCceE----EEE-------------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999764    222             5667899999999887     888887753  7778887653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2e-09  Score=97.91  Aligned_cols=141  Identities=13%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             eEEEeCCCCCeEEEe--cCC----eEEEEEccCC--CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeE
Q 015290          222 NSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV  292 (409)
Q Consensus       222 ~~l~~~~~~~~l~~~--~d~----~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i  292 (409)
                      ...+|+|||+.|+..  .+|    .+.+|++...  +.....       ...........+|+||| +.|+..+ .+|..
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~~  305 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGRP  305 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCCc
Confidence            457899999988864  233    3344666521  222222       12222334678999999 7666655 46655


Q ss_pred             EEEe--CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c---CeEEEEEccCCCcceEEEe
Q 015290          293 RLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       293 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~  366 (409)
                      .+|.  +......   ...+..             +...+....|||||++|+..+ +   ..|.+||+.. ++. ..+.
T Consensus       306 ~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt  367 (428)
T PRK01029        306 RIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLT  367 (428)
T ss_pred             eEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEcc
Confidence            5554  3321100   111111             123567789999999888653 2   5799999974 443 3333


Q ss_pred             cccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      ......               ....|+|||+.|+..+
T Consensus       368 ~~~~~~---------------~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        368 TSPENK---------------ESPSWAIDSLHLVYSA  389 (428)
T ss_pred             CCCCCc---------------cceEECCCCCEEEEEE
Confidence            222111               3789999999887544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.27  E-value=2.7e-08  Score=86.41  Aligned_cols=252  Identities=10%  Similarity=0.094  Sum_probs=139.1

Q ss_pred             ECCCCCEEEEEec----------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc-cccccc
Q 015290           40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP-EFDYLK  108 (409)
Q Consensus        40 ~~~~~~~la~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~  108 (409)
                      ++|||+.|+++..          +..|.+||..+.+.                           +.++.--.. ++.   
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---------------------------~~~i~~p~~p~~~---  102 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---------------------------IADIELPEGPRFL---  102 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---------------------------EeEEccCCCchhh---
Confidence            9999998887765          67999999998773                           222221110 000   


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEe-C-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                         .......+++  ++||++|+.+. . +..|.+.|+.+++..........    ...+...+....          ..
T Consensus       103 ---~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~----~~vy~t~e~~~~----------~~  163 (352)
T TIGR02658       103 ---VGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC----YHIFPTANDTFF----------MH  163 (352)
T ss_pred             ---ccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC----cEEEEecCCccE----------EE
Confidence               0012335667  79999998775 3 78999999999988776553111    111111111000          00


Q ss_pred             cccccccceeEEEecCCccc--ceeeeeecccccccee-EEEeCC-CCCeEEEecCCeEEEEEccCC----Cceeeeeec
Q 015290          187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNIN-SISNNS-DCETFVSADDLRINLWNLEIS----DQCFNIVDM  258 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~v~-~l~~~~-~~~~l~~~~d~~i~lwd~~~~----~~~~~~~~~  258 (409)
                      +    .|+......++....  ......+ .....++. .-.+.+ +++++.....|+|.+.|+...    ...+..+..
T Consensus       164 ~----~Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~  238 (352)
T TIGR02658       164 C----RDGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE  238 (352)
T ss_pred             e----ecCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence            0    022211111111000  0011111 11011100 003445 888888884499999997521    122222111


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEe----------CCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ....-.-..+.+.-++++|++ +.++...          ..+.|.++|..+++.    +..+..              ..
T Consensus       239 ~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv----i~~i~v--------------G~  299 (352)
T TIGR02658       239 AEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKR----LRKIEL--------------GH  299 (352)
T ss_pred             cccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeE----EEEEeC--------------CC
Confidence            100001123445559999999 6555532          225799999988764    233333              24


Q ss_pred             ceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEE
Q 015290          329 SISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       329 ~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~  365 (409)
                      .+..++++|||+ +|++.+  ++.|.+.|..+ ++.+..+
T Consensus       300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i  338 (352)
T TIGR02658       300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV  338 (352)
T ss_pred             ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence            789999999999 777665  38999999986 7888877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1e-09  Score=96.29  Aligned_cols=133  Identities=12%  Similarity=0.181  Sum_probs=95.8

Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      ++++.++++   ..+...  ....++|.++.|+|+++.+++  | .-..+.|+|++  +..+..+         ..++-+
T Consensus       252 ~Lyll~t~g---~s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---------~egpRN  315 (566)
T KOG2315|consen  252 TLYLLATQG---ESVSVP--LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---------PEGPRN  315 (566)
T ss_pred             eEEEEEecC---ceEEEe--cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---------CCCCcc
Confidence            677777762   222221  345789999999999987776  5 77899999998  5555432         335567


Q ss_pred             EEEEeCCCCCEEEEEeC---CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--
Q 015290          272 SAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  346 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--  346 (409)
                      .+-|+|.| ++++.++.   .|.+-+||+.+.+.    +..+..               ..-+-+.|+|||++++|++  
T Consensus       316 ~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a---------------~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  316 TAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL----IAKFKA---------------ANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             ceEECCCC-CEEEEeecCCCCCceEEEeccchhh----cccccc---------------CCceEEEEcCCCcEEEEEecc
Confidence            89999999 98888775   47899999988654    233333               2456689999999999763  


Q ss_pred             -----cCeEEEEEccCCCcceEEE
Q 015290          347 -----YMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       347 -----~~~v~iwd~~~~~~~~~~~  365 (409)
                           |+.++||++.  |..+...
T Consensus       376 PRlrvdNg~Kiwhyt--G~~l~~~  397 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYT--GSLLHEK  397 (566)
T ss_pred             ccEEecCCeEEEEec--Cceeehh
Confidence                 3789999986  7666543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=3.7e-10  Score=99.22  Aligned_cols=162  Identities=9%  Similarity=0.139  Sum_probs=112.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +.++++..  ++...+|++|+.||.|..||.+.............-                                  
T Consensus       176 ~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v----------------------------------  219 (703)
T KOG2321|consen  176 GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV----------------------------------  219 (703)
T ss_pred             ccceeeee--cCccceEEecccCceEEEecchhhhhheeeeccccc----------------------------------
Confidence            78999999  567778999999999999999887654443321110                                  


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                                  ...+    .......|+++.|+.+|-.+++| .+|.+.|||++ ...++.+-      -.+...+|..
T Consensus       220 ------------~s~p----g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR-a~~pl~~k------dh~~e~pi~~  276 (703)
T KOG2321|consen  220 ------------NSHP----GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR-ASKPLLVK------DHGYELPIKK  276 (703)
T ss_pred             ------------CCCc----cccccCcceEEEecCCceeEEeeccCCcEEEEEcc-cCCceeec------ccCCccceee
Confidence                        0000    01223458999999999999999 99999999999 44444331      2333467889


Q ss_pred             EEEeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeE
Q 015290          273 AEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (409)
Q Consensus       273 ~~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v  350 (409)
                      +.|.+.+. ..+++. ....++|||-.+++..    ...+.              ...++.+++-|++-+++++.+ ..+
T Consensus       277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~----asiEp--------------t~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPM----ASIEP--------------TSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             ecccccCCCceEEec-chHHhhhcccccCCce----eeccc--------------cCCcCceeeecCCceEEEecCCCcc
Confidence            99977632 455544 4567999999888752    33333              456899999999999999875 544


Q ss_pred             EEE
Q 015290          351 KLW  353 (409)
Q Consensus       351 ~iw  353 (409)
                      ..|
T Consensus       338 ~~y  340 (703)
T KOG2321|consen  338 HTY  340 (703)
T ss_pred             eeE
Confidence            444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.24  E-value=2.3e-10  Score=96.28  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=69.3

Q ss_pred             cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      .+|-..++.++|+||+++++++ .|..|++-... ....+..+      +.||...|..++.-++  +.|+++|.|++|+
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence            6899999999999999999999 99999998877 34444443      6789999999999987  5799999999999


Q ss_pred             EEeCCCcccc
Q 015290          294 LVDMRQSALC  303 (409)
Q Consensus       294 iwd~~~~~~~  303 (409)
                      +||+++++..
T Consensus       219 ~Wd~~sgk~L  228 (390)
T KOG3914|consen  219 LWDITSGKLL  228 (390)
T ss_pred             EEecccCCcc
Confidence            9999998753

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=6.9e-10  Score=104.07  Aligned_cols=198  Identities=15%  Similarity=0.161  Sum_probs=140.8

Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      |....+.-+.+.++.+..++.+.+||......                           +......+.  .        -
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~---------------------------~~~i~~~er--~--------~  132 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSV---------------------------LSKIQSDER--C--------T  132 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCce---------------------------ehhcCCCce--E--------E
Confidence            33344555667888888899999999886653                           122222210  0        0


Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      -..++-+--+++.-++++|+.-+.|.+|+....+                                              
T Consensus       133 l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----------------------------------------------  166 (967)
T KOG0974|consen  133 LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----------------------------------------------  166 (967)
T ss_pred             EEeEEEEeccCcEEEEEeccccccEEEEeccccC----------------------------------------------
Confidence            0111112115666688888888999999987221                                              


Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                                   .+.  .+.+|.+.|..+.++-+|.++++. +|.++++|+++ +.+....      ..-+|...|..+
T Consensus       167 -------------~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~-s~~~~~~------~~fgHsaRvw~~  224 (967)
T KOG0974|consen  167 -------------KPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID-SREVLGC------TGFGHSARVWAC  224 (967)
T ss_pred             -------------Ccc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecc-cccccCc------ccccccceeEEE
Confidence                         111  127999999999999999999999 99999999999 4443321      156899999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  352 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~i  352 (409)
                      .|.|+   .+++++.|.+.++|+.....+     ..+..|.            ...++.++..++...++|++ |+.+++
T Consensus       225 ~~~~n---~i~t~gedctcrvW~~~~~~l-----~~y~~h~------------g~~iw~~~~~~~~~~~vT~g~Ds~lk~  284 (967)
T KOG0974|consen  225 CFLPN---RIITVGEDCTCRVWGVNGTQL-----EVYDEHS------------GKGIWKIAVPIGVIIKVTGGNDSTLKL  284 (967)
T ss_pred             Eeccc---eeEEeccceEEEEEeccccee-----hhhhhhh------------hcceeEEEEcCCceEEEeeccCcchhh
Confidence            99985   799999999999997665432     3344332            24689999999888888886 599999


Q ss_pred             EEccC
Q 015290          353 WDIRM  357 (409)
Q Consensus       353 wd~~~  357 (409)
                      ||+..
T Consensus       285 ~~l~~  289 (967)
T KOG0974|consen  285 WDLNG  289 (967)
T ss_pred             hhhhc
Confidence            99863

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=2.1e-10  Score=107.48  Aligned_cols=149  Identities=15%  Similarity=0.261  Sum_probs=121.3

Q ss_pred             EEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceE
Q 015290           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (409)
Q Consensus        38 v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (409)
                      +-++++.-++++|+.-+.|.+|+......                          + ..+.||+            +.|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~--------------------------p-~~l~GHe------------G~iF  179 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNK--------------------------P-IRLKGHE------------GSIF  179 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCC--------------------------c-ceecccC------------CceE
Confidence            34566777899999999999999883332                          1 1578999            9999


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeE
Q 015290          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (409)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  197 (409)
                      ++.|  +.||.+++++|.|+++|+|++.+.+...-.                                            
T Consensus       180 ~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~--------------------------------------------  213 (967)
T KOG0974|consen  180 SIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCT--------------------------------------------  213 (967)
T ss_pred             EEEE--ccCCcEEEEEecCcceeeeecccccccCcc--------------------------------------------
Confidence            9999  899999999999999999999987543210                                            


Q ss_pred             EEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc-CceEEEEE
Q 015290          198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEF  275 (409)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  275 (409)
                                      ..+|...|..+.|.|+  .++++ .|-+.++|+..  +..+..       +.+|. ..+..++.
T Consensus       214 ----------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~-------y~~h~g~~iw~~~~  266 (967)
T KOG0974|consen  214 ----------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEV-------YDEHSGKGIWKIAV  266 (967)
T ss_pred             ----------------cccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehh-------hhhhhhcceeEEEE
Confidence                            1589999999999998  78888 99999999776  444444       55564 56899999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          276 HPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       276 ~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      .++. ..+++++.|+.+++||+..
T Consensus       267 ~~~~-~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  267 PIGV-IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cCCc-eEEEeeccCcchhhhhhhc
Confidence            9987 8999999999999999865

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.22  E-value=1.5e-09  Score=87.70  Aligned_cols=125  Identities=13%  Similarity=0.030  Sum_probs=93.0

Q ss_pred             eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      ..++.|++.+..++++ .+|.+.+-+.. .....+.     ..++.|....+.+.|+...++++++|+.|+.+..||+|.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4578899999999999 99998854443 1222221     237889999999999988889999999999999999994


Q ss_pred             ccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      .+.     .+|..          ..-|...|.++.-+| ++.+|++|+. ..|++||.++-++++..-+
T Consensus       198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~  251 (339)
T KOG0280|consen  198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK  251 (339)
T ss_pred             Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence            332     33332          133567788888776 4789999984 9999999996577765544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=8.4e-08  Score=94.65  Aligned_cols=309  Identities=11%  Similarity=0.055  Sum_probs=177.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEE----eccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+...                         +.+..+         
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-------------------------E~VG~v---------  119 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-------------------------EIVGSV---------  119 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-------------------------EEEEEE---------
Confidence            35789999999999999999999999998    4333221                         122222         


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee----------------------eccCCCcccc--
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------------KEMDHFPFVS--  162 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------~~~~~~~~~~--  162 (409)
                            +..|.+++|  |||+..|+.+..++++.+..-. ......                      ..++.+....  
T Consensus       120 ------d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa  190 (928)
T PF04762_consen  120 ------DSGILAASW--SPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAA  190 (928)
T ss_pred             ------cCcEEEEEE--CCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhh
Confidence                  278999999  8999999999999988776421 111000                      0011000000  


Q ss_pred             ------cc-----cccccccCceeccCCCCCceeecccc--ccc--ceeEEEecCCcccceeeeeeccccccceeEEEeC
Q 015290          163 ------SE-----NTLLAEKNFMNEHNPPSFAHGYHLEW--TEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNN  227 (409)
Q Consensus       163 ------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  227 (409)
                            .+     .....+.......|.+++.+++....  ..+  ..+|+|+-+...    ..+. ..-.+--.+++|.
T Consensus       191 ~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L----~stS-E~v~gLe~~l~Wr  265 (928)
T PF04762_consen  191 RQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL----QSTS-EPVDGLEGALSWR  265 (928)
T ss_pred             hhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE----Eecc-ccCCCccCCccCC
Confidence                  00     00013345566678888888887776  333  589999987421    1111 2222334578999


Q ss_pred             CCCCeEEEe-c---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccc
Q 015290          228 SDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (409)
Q Consensus       228 ~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~  303 (409)
                      |.|+++|+. .   ...|.+|.-+  |-.-..+.++   +......|..+.|++++ .+||..-.|. |.+|-..+....
T Consensus       266 PsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWY  338 (928)
T PF04762_consen  266 PSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWY  338 (928)
T ss_pred             CCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEE
Confidence            999999986 3   3466777755  4333333333   23455678999999999 9999877655 999988775322


Q ss_pred             ccccccccccccccCCcccccccccceeeeEeccCC-CEEEEeec-CeEEEEEcc----CC-------CcceEEEecccC
Q 015290          304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIR----MD-------STPVATFKIHEH  370 (409)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~~-~~v~iwd~~----~~-------~~~~~~~~~~~~  370 (409)
                      .+..-.+..              ...+..+.|+|.. ..|...+. +.+..+++.    ..       ...+..+.|..-
T Consensus       339 LKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l  404 (928)
T PF04762_consen  339 LKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL  404 (928)
T ss_pred             EEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE
Confidence            211111111              1234447888854 23444332 444443322    10       011222222111


Q ss_pred             --------cccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          371 --------LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       371 --------~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                              .++--...++......|.+++|++++..+|+-..||+|
T Consensus       405 llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l  450 (928)
T PF04762_consen  405 LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL  450 (928)
T ss_pred             EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence                    11110111111122235799999999888888888865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=2.4e-08  Score=90.34  Aligned_cols=198  Identities=14%  Similarity=0.118  Sum_probs=116.4

Q ss_pred             CcEEEEEECCCCCE-EEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           33 DIVSAIEFDKTGDY-LAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        33 ~~v~~v~~~~~~~~-la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +.+....|+|||+. ++..+.+   ..|.++|+.+++.                         +.+.   ...       
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------------------------~~lt---~~~-------  232 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------------------------EKIA---SSQ-------  232 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------------------------EEEe---cCC-------
Confidence            46778999999985 6654443   4588888877653                         1122   122       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEE-eCC--CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILS-TND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                           +......|  +|||+.++.. +.+  ..|.++|+.++....+.                                
T Consensus       233 -----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT--------------------------------  273 (419)
T PRK04043        233 -----GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT--------------------------------  273 (419)
T ss_pred             -----CcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc--------------------------------
Confidence                 44556779  8999877654 333  45666676666443321                                


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeecCCC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                                                    .+........|+|||+.|+..  ..+  .|.+.|+. .+...+..     
T Consensus       274 ------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt-----  317 (419)
T PRK04043        274 ------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV-----  317 (419)
T ss_pred             ------------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc-----
Confidence                                          111112234799999887764  333  57777776 44433321     


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCC---------CeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                       ..+.    ....|+|+| +.++..+..         ..|.+.|+.++..     +.+..              ......
T Consensus       318 -~~g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~  372 (419)
T PRK04043        318 -FHGK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQF  372 (419)
T ss_pred             -cCCC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCC
Confidence             1111    124899999 777665543         2677788877653     22222              012335


Q ss_pred             eEeccCCCEEEEee-c---CeEEEEEccCCCcceEEEec
Q 015290          333 IKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       333 ~~~s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~  367 (409)
                      ..|+|||+.|+... .   ..+.+.++.  +.....+..
T Consensus       373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~  409 (419)
T PRK04043        373 PRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL  409 (419)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence            88999999887653 2   346666664  555555543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.17  E-value=1.4e-08  Score=87.67  Aligned_cols=145  Identities=13%  Similarity=0.147  Sum_probs=108.5

Q ss_pred             cccccceeEEEeCCCCCeEEEe-cCC-eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          215 HAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~~~l~~~-~d~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      -++...|.-..+..+++-++.| .|| .+-++|.+ .++...        +.+.-+.|.++..+|+| ++++.+.....|
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el  425 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL  425 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence            4677778888888888888999 887 89999998 554333        34455789999999999 999999999999


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----c-CeEEEEEccCCCcceEEEec
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~-~~v~iwd~~~~~~~~~~~~~  367 (409)
                      .+.|+.++..     +......            .+-|+..+|||+++++|-+-    - ..|++||+.. ++....-..
T Consensus       426 ~vididngnv-----~~idkS~------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT~  487 (668)
T COG4946         426 WVIDIDNGNV-----RLIDKSE------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTTP  487 (668)
T ss_pred             EEEEecCCCe-----eEecccc------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecCC
Confidence            9999999874     3333311            35799999999999999762    2 7899999974 454433322


Q ss_pred             ccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      ...-                ++-+|.|||++|..-|
T Consensus       488 ta~D----------------fsPaFD~d~ryLYfLs  507 (668)
T COG4946         488 TAYD----------------FSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccc----------------cCcccCCCCcEEEEEe
Confidence            2221                4789999999876543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.13  E-value=1.9e-07  Score=92.15  Aligned_cols=295  Identities=14%  Similarity=0.163  Sum_probs=166.6

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhh--cccccccCCCceeeeeeecCCCccc-----
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEK--QMDFTSTSHPEYRYKTEFQSHEPEF-----  104 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~~-----  104 (409)
                      ...|.+++||||++.||....++++.+...+=.-....+. ....++.  +-..-|..     --+.|+|-..+.     
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l-~~~~~~~~~~VsVGWGk-----KeTQF~Gs~gK~aa~~~  193 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPL-DSDDFGESKHVSVGWGK-----KETQFHGSAGKAAARQL  193 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeec-CccccCCCceeeeccCc-----ccCccCcchhhhhhhhc
Confidence            5689999999999999999989988876532110000000 0000000  00000000     001111111100     


Q ss_pred             -cc------cccceeccceEEEEEEecCCCCEEEEEeC------CCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290          105 -DY------LKSLEIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (409)
Q Consensus       105 -~~------~~~~~~~~~v~~l~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (409)
                       ++      ...+..+..-..|+|  ..||++||+.+.      -+.+|||+-+ |.+....+             +..+
T Consensus       194 ~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-------------~v~g  257 (928)
T PF04762_consen  194 RDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-------------PVDG  257 (928)
T ss_pred             cCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-------------cCCC
Confidence             00      011112256678999  799999998764      2578999865 44433321             3344


Q ss_pred             CceeccCCCCCceeeccccccc-ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290          172 NFMNEHNPPSFAHGYHLEWTEN-MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (409)
                      ..-...|.|++.++++.....+ ..|.+|.-+.-..++..-.+ ......|..++|++++..||.. .|. |.+|-....
T Consensus       258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            4556678888888888876333 37888877665444432222 3456678999999999999998 555 999988722


Q ss_pred             Ccee-eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC----Ccccc---c---------c--ccccc
Q 015290          250 DQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR----QSALC---D---------H--SARIL  310 (409)
Q Consensus       250 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~----~~~~~---~---------~--~~~~~  310 (409)
                      .-.+ +.+.     +. ....+..+.|+|..+..|.....+|.+..+++.    .+...   .         .  .+..+
T Consensus       336 HWYLKqei~-----~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf  409 (928)
T PF04762_consen  336 HWYLKQEIR-----FS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF  409 (928)
T ss_pred             EEEEEEEEE-----cc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence            2112 1211     11 122344599999887788888877776655432    11100   0         0  00111


Q ss_pred             cccccccCCccccc-ccccceeeeEeccCCCEEEEe-ecCeEEEEEccC
Q 015290          311 RDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM  357 (409)
Q Consensus       311 ~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~  357 (409)
                      .. ..-|+++..+. ....+|..++|++++..+|+- ++|.|.+|....
T Consensus       410 ~~-a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  410 RR-AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             cc-cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            11 22233332222 235789999999998766665 569999998653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=5.1e-09  Score=89.61  Aligned_cols=285  Identities=14%  Similarity=0.132  Sum_probs=179.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      -|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.                        ..+.+..+..|-        
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL--------   53 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL--------   53 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH--------
Confidence            388888887665 45799999999999999855311                        123556677777        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC-Cceeec
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYH  187 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  187 (409)
                          ..|.+++-  +.++..++|.+. |+.++++|+.+-.+....+...-+..            .....++. ..-+..
T Consensus        54 ----~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~------------a~wv~skGd~~s~IA  115 (558)
T KOG0882|consen   54 ----GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF------------AEWVTSKGDKISLIA  115 (558)
T ss_pred             ----HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCc------------eEEecCCCCeeeeEE
Confidence                78888888  789999999777 99999999987765544333222211            11111111 111122


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc-eee--eeecCCC--
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFN--IVDMKPS--  261 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~-~~~--~~~~~~~--  261 (409)
                      .+...++.+.++|-......  ...+-.-|..+|.++.+++.+..+++. ..|.|.-|.....-+ +-.  .+.++..  
T Consensus       116 Vs~~~sg~i~VvD~~~d~~q--~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd  193 (558)
T KOG0882|consen  116 VSLFKSGKIFVVDGFGDFCQ--DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD  193 (558)
T ss_pred             eecccCCCcEEECCcCCcCc--cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence            22234566777766543221  112225689999999999999999999 899999999872000 000  0111111  


Q ss_pred             --cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc---------------cccc
Q 015290          262 --NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---------------SFFT  324 (409)
Q Consensus       262 --~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~  324 (409)
                        .+..-.....++.|+|++ ..+.+-+.|..|++++.+++++....-......+..+...               ..+.
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele  272 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE  272 (558)
T ss_pred             hhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence              123345667899999999 9999999999999999999875321111110000011000               0122


Q ss_pred             ccc-cceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEeccc
Q 015290          325 EII-ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       325 ~~~-~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      .|. ..-+.+.|...|++|+.|+--.|++.++.+ +.+...+...+
T Consensus       273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e  317 (558)
T KOG0882|consen  273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDE  317 (558)
T ss_pred             hhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccch
Confidence            233 244668899999999999887789999986 66666654433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=9.4e-08  Score=86.56  Aligned_cols=141  Identities=9%  Similarity=0.072  Sum_probs=84.1

Q ss_pred             ccceeEEEeCCCCCeEEEe--c--CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCC--
Q 015290          218 DFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--  290 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg--  290 (409)
                      .+......|+|||+.++..  .  +..|.++|+. .+....        +..+........|+||| +.|+..+ ..+  
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~  301 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYP  301 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCc
Confidence            3445567899999888754  3  4567788876 444332        22222223456899999 6666555 333  


Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec----------CeEEEEEccCCCc
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDST  360 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~----------~~v~iwd~~~~~~  360 (409)
                      .|.+.|+.+++..    ++...               +. ....|+|||++|+....          ..|.+.|+.. +.
T Consensus       302 ~Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~  360 (419)
T PRK04043        302 NIFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY  360 (419)
T ss_pred             eEEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence            5777788766531    11111               01 12489999998885431          2678888864 33


Q ss_pred             ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                       ...+......                ....|+|||+.|+..+.++
T Consensus       361 -~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        361 -IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             -eEECCCCCCc----------------CCeEECCCCCEEEEEEccC
Confidence             3344332211                2589999999887765543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=1.1e-07  Score=82.25  Aligned_cols=139  Identities=21%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCC-eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      +.|.-..+  ..+++-++.|..|| .+-|+|..+++.+++                                        
T Consensus       360 ~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----------------------------------------  397 (668)
T COG4946         360 GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----------------------------------------  397 (668)
T ss_pred             CceEEEEE--ccCCcceEEeccCCceEEEEecCCceEEEe----------------------------------------
Confidence            67888888  57778899999999 899999999877665                                        


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                            ...-+.|.++..+|+|++++.+ ....|.+.|+. ++.....       -....+-|+
T Consensus       398 ----------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~i-------dkS~~~lIt  447 (668)
T COG4946         398 ----------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLI-------DKSEYGLIT  447 (668)
T ss_pred             ----------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEe-------cccccceeE
Confidence                                  3345678899999999999999 88899999998 5544332       233456799


Q ss_pred             EEEEeCCCCCEEEEEeCCC----eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          272 SAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+.|+|++ +++|.+--+|    .|+++|+.+++..    .....              .+.=.+.+|.|||++|.
T Consensus       448 df~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         448 DFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEE
Confidence            99999999 9999876554    6899999987642    11111              12334567888888765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.02  E-value=1.3e-07  Score=82.53  Aligned_cols=294  Identities=13%  Similarity=0.098  Sum_probs=164.9

Q ss_pred             CcEEEEEECCCCCEEEEEecCC---------------eEEEEeccCCcCCCCccchhhhhhhcccc--cccC---CCcee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGG---------------RVILFETVGGKNTPNQHISRSELEKQMDF--TSTS---HPEYR   92 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~   92 (409)
                      ..|..+.|+|.++||.+=+..+               .+.+||..++..       ...+.....+  -|..   .-.-+
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i-------v~sf~~~~q~~~~Wp~~k~s~~D~  144 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI-------VFSFNGISQPYLGWPVLKFSIDDK  144 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee-------EeeccccCCcccccceeeeeecch
Confidence            4688999999999999865443               389999988764       2222222111  1100   00000


Q ss_pred             eeeeecCCC---------ccccccccceeccceEEEEEEecCCCCEEEE-----EeCCCeEEEEEcCCceeeeeeccCCC
Q 015290           93 YKTEFQSHE---------PEFDYLKSLEIEEKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHF  158 (409)
Q Consensus        93 ~~~~~~~h~---------~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~  158 (409)
                      +...+-+|+         .+-.+...+. ...|....|+|..++..|+.     .+.++++++|.+..+.......+-.-
T Consensus       145 y~ARvv~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~  223 (561)
T COG5354         145 YVARVVGSSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV  223 (561)
T ss_pred             hhhhhccCeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee
Confidence            111111111         0000111222 15688888855334555554     36778999999875554433221100


Q ss_pred             cccccccccccccCceeccCCCCCceeeccc---c----c--ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC
Q 015290          159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLE---W----T--ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD  229 (409)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  229 (409)
                                   .-+..-++..+.++....   .    .  ....+.|++++.    ..++.. ....++|...+|.|.
T Consensus       224 -------------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e----~~i~V~-~~~~~pVhdf~W~p~  285 (561)
T COG5354         224 -------------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE----RSIPVE-KDLKDPVHDFTWEPL  285 (561)
T ss_pred             -------------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc----ccccee-ccccccceeeeeccc
Confidence                         001111111111111000   0    0  012566666652    222222 245789999999999


Q ss_pred             CCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCcccc
Q 015290          230 CETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALC  303 (409)
Q Consensus       230 ~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~  303 (409)
                      ++.+++  | .+..+.++|++  +.....       ++  ...-..+.|+|.+ ++++.++.|   |.+-+||......+
T Consensus       286 S~~F~vi~g~~pa~~s~~~lr--~Nl~~~-------~P--e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         286 SSRFAVISGYMPASVSVFDLR--GNLRFY-------FP--EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             CCceeEEecccccceeecccc--cceEEe-------cC--CcccccccccCcc-cEEEEecCCccccceEEeccCCceEE
Confidence            887765  6 78999999998  333332       11  2233578899999 888887765   67999998775432


Q ss_pred             ccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-------cCeEEEEEccCCCcceEEEecccCcccccc
Q 015290          304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (409)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  376 (409)
                         ...+..               ....-+.|+|||+++.+..       |..|+|||+.  +..+.      ..     
T Consensus       354 ---~~~~~~---------------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--g~~~f------el-----  402 (561)
T COG5354         354 ---AGAFNG---------------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--GAKVF------EL-----  402 (561)
T ss_pred             ---EEEeec---------------CCceEeeccCCceEEEecCCCcccccCcceEEEEec--Cchhh------hh-----
Confidence               112222               2445678999999988642       3689999996  44433      11     


Q ss_pred             cccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          377 DLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                                 +.+.|.|.|++..+.|.+.
T Consensus       403 -----------~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         403 -----------TNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -----------hhccccCCcccceeeccCC
Confidence                       3688888887776665543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.1e-07  Score=82.02  Aligned_cols=267  Identities=9%  Similarity=0.088  Sum_probs=155.9

Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      =+-+.|||-|.||+|--..| |.+|--.+-..                           ++. -.|.             
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~R-F~Hp-------------  250 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQR-FYHP-------------  250 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHh-ccCC-------------
Confidence            35689999999999988776 88997554321                           111 2343             


Q ss_pred             ceEEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          115 KINRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                      .|.-+.|  ||+.+||+|-+.           ...+.|||+.+|...+.+..-..          .....--..++.+..
T Consensus       251 ~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~----------~~~~WP~frWS~DdK  318 (698)
T KOG2314|consen  251 GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS----------PYLKWPIFRWSHDDK  318 (698)
T ss_pred             Cceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC----------CccccceEEeccCCc
Confidence            6888999  899999999643           15799999999987765442100          011111222444555


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--c----CCeEEEEEccCCCceeeeee
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D----DLRINLWNLEISDQCFNIVD  257 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~----d~~i~lwd~~~~~~~~~~~~  257 (409)
                      +++...   ...|.+++......... +   .-.-..|....|+|.++.||.=  .    -..+.|-.+. .++.+++. 
T Consensus       319 y~Arm~---~~sisIyEtpsf~lld~-K---slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP-s~~~iRt~-  389 (698)
T KOG2314|consen  319 YFARMT---GNSISIYETPSFMLLDK-K---SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIRTK-  389 (698)
T ss_pred             eeEEec---cceEEEEecCceeeecc-c---ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC-ccceeeec-
Confidence            555443   35677776543111000 0   1123457788999999888852  2    2245566665 44444431 


Q ss_pred             cCCCcCcCccCceEEEEEeCCCCCEEEEEe----------CCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                            .-+.-.=..+-|-.+| .+|+.--          .=..+-|+.++.....   +...+.              .
T Consensus       390 ------nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---ve~vel--------------k  445 (698)
T KOG2314|consen  390 ------NLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---VEVVEL--------------K  445 (698)
T ss_pred             ------cceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC---ceeeec--------------c
Confidence                  1111122345677777 6666421          1123556666654432   222333              4


Q ss_pred             cceeeeEeccCCCEEEE--eec--CeEEEEEccCCC---cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          328 ASISDIKFANDGQHLLS--RDY--MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~s--g~~--~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      ..|...+|-|.|.-+++  |.+  .++.+|.+.+..   +++..+.... .                ..+.|+|.|++++
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-~----------------N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-A----------------NTVFWSPKGRFVV  508 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-c----------------ceEEEcCCCcEEE
Confidence            57899999999987664  433  889999987312   2233333211 1                4899999999988


Q ss_pred             EcccC
Q 015290          401 TGSYR  405 (409)
Q Consensus       401 s~s~d  405 (409)
                      .+..-
T Consensus       509 va~l~  513 (698)
T KOG2314|consen  509 VAALV  513 (698)
T ss_pred             EEEec
Confidence            76543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.00  E-value=4.8e-07  Score=91.12  Aligned_cols=178  Identities=12%  Similarity=0.096  Sum_probs=96.9

Q ss_pred             eeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCC--CcCcC------ccCceEEEEEeCCCCCEEEEEeCCC
Q 015290          221 INSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDD------LTEVITSAEFHPIYCNLLAYSSSRG  290 (409)
Q Consensus       221 v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~--~~~~~------~~~~v~~~~~~p~~~~~l~s~s~dg  290 (409)
                      ...++++|+ +..+++. .++.|++||.. .+.. ..+....  ....+      .-.....++++|++..++++-+.++
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~  762 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS  762 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECC-CCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence            357899995 5555555 78999999987 3332 2211000  00011      1134578999999833666667789


Q ss_pred             eEEEEeCCCccccccccccccc-cccccCCccccc--------ccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCc
Q 015290          291 FVRLVDMRQSALCDHSARILRD-AAESHGSKSFFT--------EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  360 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~  360 (409)
                      .|++||+.++...     .... ....+.....+.        ..-.....++++++|+++++-.. +.|++||..+ +.
T Consensus       763 ~Irv~D~~tg~~~-----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~  836 (1057)
T PLN02919        763 SIRALDLKTGGSR-----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR  836 (1057)
T ss_pred             eEEEEECCCCcEE-----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence            9999999875421     1100 000000000000        01123468899999987666654 9999999874 43


Q ss_pred             ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      . ..+.+....... ..............++++++|+.+++.+.++.|
T Consensus       837 v-~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        837 V-TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             E-EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            3 333332211000 000000001122589999999988887777654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=4.8e-07  Score=91.11  Aligned_cols=239  Identities=12%  Similarity=0.126  Sum_probs=133.7

Q ss_pred             cEEEEEECCCCCEEEEEe-cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc-cccc----c
Q 015290           34 IVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP-EFDY----L  107 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~~~----~  107 (409)
                      .-..|++++++..|+++. .++.|+++|..++..                            .++.+-.. ..++    .
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V----------------------------~tlag~G~~g~~~~gg~~  676 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV----------------------------RTLAGNGTKGSDYQGGKK  676 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE----------------------------EEEeccCcccCCCCCChh
Confidence            357889998887666654 456899999876542                            11211000 0000    0


Q ss_pred             ccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                      .....-.....+++  ++ ++..+++.+.++.|++||..++........               +.....          
T Consensus       677 ~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~---------------G~~~~~----------  729 (1057)
T PLN02919        677 GTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD---------------GYERNL----------  729 (1057)
T ss_pred             hhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECCCCeEEEEecC---------------CccccC----------
Confidence            00000023467899  56 566667778889999999887654322110               000000          


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC----
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP----  260 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~----  260 (409)
                            ++             ....   ...-.....++++|+++.|+++  .++.|++||+. .+.........+    
T Consensus       730 ------~g-------------~~~~---~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~-tg~~~~~~gg~~~~~~  786 (1057)
T PLN02919        730 ------NG-------------SSGT---STSFAQPSGISLSPDLKELYIADSESSSIRALDLK-TGGSRLLAGGDPTFSD  786 (1057)
T ss_pred             ------CC-------------Cccc---cccccCccEEEEeCCCCEEEEEECCCCeEEEEECC-CCcEEEEEecccccCc
Confidence                  00             0000   0111345679999999866655  78999999987 332211110000    


Q ss_pred             --CcCcC--------ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC--Cccccccccc
Q 015290          261 --SNMDD--------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG--SKSFFTEIIA  328 (409)
Q Consensus       261 --~~~~~--------~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  328 (409)
                        ..+..        .-.....++++++| .++++-+.++.|++||..++...     .+.. .....  .-....+.-.
T Consensus       787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~-----tiaG-~G~~G~~dG~~~~a~l~  859 (1057)
T PLN02919        787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVT-----TLAG-TGKAGFKDGKALKAQLS  859 (1057)
T ss_pred             ccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEE-----EEec-cCCcCCCCCcccccccC
Confidence              00100        11234689999999 88888889999999999876531     1111 00000  0000111223


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEEccC
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRM  357 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~  357 (409)
                      ....++++++|+++++-+. +.|++||+.+
T Consensus       860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        860 EPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            5678999999987766654 9999999976

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.98  E-value=6e-06  Score=71.98  Aligned_cols=244  Identities=10%  Similarity=0.052  Sum_probs=127.4

Q ss_pred             cCCCCEEEEEeC----------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          124 APNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       124 s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +||++.|+.+..          +..|.+||..+.+..........+...      ..........++++.+++......+
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~------~~~~~~~~~ls~dgk~l~V~n~~p~  127 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL------VGTYPWMTSLTPDNKTLLFYQFSPS  127 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh------ccCccceEEECCCCCEEEEecCCCC
Confidence            799999887754          789999999999887766543222100      0111223344667777777777778


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCce-EE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~  272 (409)
                      ..+.+.|+.+......+..     .+...-.. .++..+++.+.||......+...++.. .-..+.  +..-..++ ..
T Consensus       128 ~~V~VvD~~~~kvv~ei~v-----p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~v--f~~~~~~v~~r  198 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDV-----PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEV--FHPEDEYLINH  198 (352)
T ss_pred             CEEEEEECCCCcEEEEEeC-----CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceE-Eeeeee--ecCCccccccC
Confidence            8899999876332222111     11111111 112222222333433333333222211 100000  00000000 00


Q ss_pred             EEEeC-CCCCEEEEEeCCCeEEEEeCCCccccccc-cccccccccccCCcccccccccceeeeEeccCCCEEEEee----
Q 015290          273 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----  346 (409)
Q Consensus       273 ~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----  346 (409)
                      -.|.+ +| +++..... |.|.+.|+......... ...+.. .+..   ..+  ..+.+.-++++|+++.+....    
T Consensus       199 P~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~---~~w--rP~g~q~ia~~~dg~~lyV~~~~~~  270 (352)
T TIGR02658       199 PAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKA---DGW--RPGGWQQVAYHRARDRIYLLADQRA  270 (352)
T ss_pred             CceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-cccc---ccc--CCCcceeEEEcCCCCEEEEEecCCc
Confidence            04456 66 66555444 99999997654321110 111111 0000   000  012344599999998877632    


Q ss_pred             -----c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcc-cCCC
Q 015290          347 -----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YRRD  407 (409)
Q Consensus       347 -----~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s-~dg~  407 (409)
                           +  +.|.++|..+ ++.+..+......                ..++++|||+ +|++.+ .++.
T Consensus       271 ~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       271 KWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             cccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCc
Confidence                 1  5899999986 7888877754433                5899999999 777555 3443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.97  E-value=1.1e-06  Score=71.59  Aligned_cols=237  Identities=16%  Similarity=0.197  Sum_probs=131.5

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      .++.+++|++||.- .|..|.|=...+.-..                         .+...+-....         ...=
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~s-------------------------i~~kcqVpkD~---------~PQW   46 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSS-------------------------IIGKCQVPKDP---------NPQW   46 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchh-------------------------eeEEEecCCCC---------Cchh
Confidence            35678899998876 4667777655443210                         11222222110         0345


Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccccee
Q 015290          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  196 (409)
                      +.++|  |||+..||.+...|+|+++|+....+-.+.......                                     
T Consensus        47 Rkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~-------------------------------------   87 (282)
T PF15492_consen   47 RKLAW--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFP-------------------------------------   87 (282)
T ss_pred             eEEEE--CCCCcEEEEEcCCCeEEEEecccceeEEcCcccccC-------------------------------------
Confidence            67999  899999999999999999999875543321100000                                     


Q ss_pred             EEEecCCcccceeeeeeccccccceeEEEeCC-------CCCeEEEecCCeEEEEEccC----CCceeeeeecCCCcCcC
Q 015290          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI----SDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~~l~~~~d~~i~lwd~~~----~~~~~~~~~~~~~~~~~  265 (409)
                                        ..-...|..|.|-+       .-++|+....|.++=|-+..    .-+....+..    ...
T Consensus        88 ------------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf----~~~  145 (282)
T PF15492_consen   88 ------------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF----SSH  145 (282)
T ss_pred             ------------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe----ccc
Confidence                              01112223333311       12344444677766665421    1112222211    122


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCC----C-------eEEEEeCCCcccccccccccccccc-cc--------CCcccc--
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSR----G-------FVRLVDMRQSALCDHSARILRDAAE-SH--------GSKSFF--  323 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~d----g-------~i~iwd~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~--  323 (409)
                      +...|.++.++|.. ++|+.|+..    +       -+..|.+-++.+.-+.+...+.+-. .+        .....+  
T Consensus       146 yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  146 YPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             CCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence            36789999999998 777776531    1       2667776665433221111111000 00        000011  


Q ss_pred             -cccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCc
Q 015290          324 -TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       324 -~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                       ......|..|..||||+.||+.. .|.|.+|++.. -+....++.++.+
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~eqP  273 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDEQP  273 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhcccchhhCC
Confidence             12356899999999999999997 49999999975 5666666655544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.94  E-value=1.3e-06  Score=73.33  Aligned_cols=238  Identities=16%  Similarity=0.211  Sum_probs=139.5

Q ss_pred             CcEEEEEECC-CCCEEEEEecCCe-EEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           33 DIVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        33 ~~v~~v~~~~-~~~~la~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .....++.+| .+..+|.+-.-|+ ..+||..+++..       ..+.         .   ..-+.|-||.         
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-------~~~~---------a---~~gRHFyGHg---------   56 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-------QRLW---------A---PPGRHFYGHG---------   56 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-------eEEc---------C---CCCCEEecCE---------
Confidence            3456888999 6677788877774 678999887741       0000         0   0113456665         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEe-----CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          111 EIEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                               .|  |+||++|++.-     ..|.|-|||... ...++-+                               
T Consensus        57 ---------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E-------------------------------   93 (305)
T PF07433_consen   57 ---------VF--SPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGE-------------------------------   93 (305)
T ss_pred             ---------EE--cCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeE-------------------------------
Confidence                     46  79999999863     347888888872 2322222                               


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecC--------Ce-----------EEEEEc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LR-----------INLWNL  246 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d--------~~-----------i~lwd~  246 (409)
                                                 | ..+.-....+.+.|||+.|++++.        |.           +.+-|.
T Consensus        94 ---------------------------~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~  145 (305)
T PF07433_consen   94 ---------------------------F-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA  145 (305)
T ss_pred             ---------------------------e-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence                                       1 233333455778888877777532        22           233333


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe-------EEEEeCCCccccccccccccccccccCC
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-------VRLVDMRQSALCDHSARILRDAAESHGS  319 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~  319 (409)
                      . ++..+....++   -.-|...+..+++.++| ..++..-..|.       |-+++....      +..+..      .
T Consensus       146 ~-sG~ll~q~~Lp---~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~------~~~~~~------p  208 (305)
T PF07433_consen  146 R-SGALLEQVELP---PDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA------LRLLPA------P  208 (305)
T ss_pred             C-CCceeeeeecC---ccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc------ceeccC------C
Confidence            3 44444432211   13467789999999998 66665544332       333332221      011111      0


Q ss_pred             cccccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          320 KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       320 ~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                      ..........+-+++++++|.++++.+-  +.+.+||..+ ++.+....-...                 ..++-.+++ 
T Consensus       209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-  269 (305)
T PF07433_consen  209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-  269 (305)
T ss_pred             hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-
Confidence            0001122467899999999999987763  9999999986 777766543332                 356666666 


Q ss_pred             eEEEcccC
Q 015290          398 HFATGSYR  405 (409)
Q Consensus       398 ~l~s~s~d  405 (409)
                      +++|.+..
T Consensus       270 f~~ssG~G  277 (305)
T PF07433_consen  270 FLVSSGQG  277 (305)
T ss_pred             eEEeCCCc
Confidence            66665543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=2.7e-09  Score=93.67  Aligned_cols=185  Identities=24%  Similarity=0.302  Sum_probs=119.8

Q ss_pred             eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (409)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (409)
                      +..+.||+            +.|..++-.  .+.+.+++++.|++|++|.++...-..                      
T Consensus       728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~----------------------  771 (1034)
T KOG4190|consen  728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEI----------------------  771 (1034)
T ss_pred             eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCcc----------------------
Confidence            45678888            788888763  566689999999999999987431110                      


Q ss_pred             eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCcee
Q 015290          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF  253 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~  253 (409)
                                                     .+..|..++ ..|..+|..+.|-.+-+++++ .||.|.+||.- -+..+
T Consensus       772 -------------------------------~tsaCQfTY-~aHkk~i~~igfL~~lr~i~S-cD~giHlWDPF-igr~L  817 (1034)
T KOG4190|consen  772 -------------------------------GTSACQFTY-QAHKKPIHDIGFLADLRSIAS-CDGGIHLWDPF-IGRLL  817 (1034)
T ss_pred             -------------------------------ccceeeeEh-hhccCcccceeeeeccceeee-ccCcceeeccc-ccchh
Confidence                                           002344455 789999999999888776665 46779999987 34443


Q ss_pred             e-eeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          254 N-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       254 ~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      . ..+.+   -.+..+.|.++.- -+.+-+++.++...+|+++|.|..+.. ...++.+.           .+..+-+.+
T Consensus       818 aq~~dap---k~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~-~E~kVcna-----------~~Pna~~R~  881 (1034)
T KOG4190|consen  818 AQMEDAP---KEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWT-CELKVCNA-----------PGPNALTRA  881 (1034)
T ss_pred             HhhhcCc---ccCCCceeEeccc-Ccchheeeeccchhhheeeecccccce-eeEEeccC-----------CCCchheeE
Confidence            3 22111   1111223333321 123123444478999999999986531 11122211           111456889


Q ss_pred             eEeccCCCEEEEe-ecCeEEEEEccCCCcceEEE
Q 015290          333 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       333 ~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~~~~  365 (409)
                      ++..+.|+++|++ +.|+|.+.|.++ |+.+..+
T Consensus       882 iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINsw  914 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGCIAILDARN-GKVINSW  914 (1034)
T ss_pred             EEeccCcchhhHHhcCCcEEEEecCC-CceeccC
Confidence            9999999999998 559999999986 7665543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=7.2e-06  Score=69.36  Aligned_cols=227  Identities=14%  Similarity=0.135  Sum_probs=136.7

Q ss_pred             EEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (409)
Q Consensus        37 ~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (409)
                      ++.|.+ ++.++++--..+.|..|+..++..                            ..+..              ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------~~~~~--------------~~   41 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------EVIDL--------------PG   41 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------EEEES--------------SS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------EEEec--------------CC
Confidence            568888 777777777889999999887652                            11111              23


Q ss_pred             eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      ...+.+. .++ ..|+.+...+ +.++|+.+++...+.....                                      
T Consensus        42 ~~G~~~~-~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~--------------------------------------   80 (246)
T PF08450_consen   42 PNGMAFD-RPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD--------------------------------------   80 (246)
T ss_dssp             EEEEEEE-CTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET--------------------------------------
T ss_pred             CceEEEE-ccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC--------------------------------------
Confidence            6677773 145 4666666655 4555988886655432100                                      


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC--------CeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                        -.......+.+++.|+|++.++. ..        |.|..++..  ++....        ...
T Consensus        81 ------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~  132 (246)
T PF08450_consen   81 ------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADG  132 (246)
T ss_dssp             ------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEE
T ss_pred             ------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecC
Confidence                              01134557889999999977764 22        345555544  332222        122


Q ss_pred             cCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      -...+.++|+|++ +.| ++-+..+.|..+++..........+.+..          +..-.+..-.+++..+|++.++.
T Consensus       133 ~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~  201 (246)
T PF08450_consen  133 LGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVAD  201 (246)
T ss_dssp             ESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEE
T ss_pred             cccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEE
Confidence            3456899999999 655 46677888999998643211111111211          00001247789999999877766


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc-CCCCeEEEc
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATG  402 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~s~  402 (409)
                      .. +.|.++|.+  ++.+..+.......               ++++|. ++.+.|...
T Consensus       202 ~~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  202 WGGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             ETTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEEE
T ss_pred             cCCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEEE
Confidence            54 999999976  88888887663332               699994 676665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=1.2e-08  Score=92.62  Aligned_cols=266  Identities=14%  Similarity=0.178  Sum_probs=158.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      -.+.+.++..+|.|+-+|.++.-| +.+.|++..-.                       ..+.+..+..           
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~tp-----------   67 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHITP-----------   67 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------CceeeeccCc-----------
Confidence            357889999999999999999877 55667665332                       1111221111           


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc--eeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                         -.|-.+.|.|.+.-.+-++......-.+|++...  +.+.+........+..+.+......++           +..
T Consensus        68 ---w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVl-----------atc  133 (1081)
T KOG0309|consen   68 ---WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVL-----------ATC  133 (1081)
T ss_pred             ---chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcce-----------eec
Confidence               2356677765554455555544444557877532  223333333333333333333333222           222


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  +..+..||+....  .++..+ ..-......++|+-. +..+++...+.|.+||++....++..       +++|.
T Consensus       134 sv--dt~vh~wd~rSp~--~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s-------~K~~v  201 (1081)
T KOG0309|consen  134 SV--DTYVHAWDMRSPH--RPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS-------LKGHV  201 (1081)
T ss_pred             cc--cccceeeeccCCC--cceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE-------ecccc
Confidence            22  6789999997532  222222 222344567889865 45555557888999999966666666       67788


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE---
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS---  344 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s---  344 (409)
                      ..|+.++|..--...+.+.+.|++|+.||.........  .....              ..+|+...+.|-|+-...   
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt--------------~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTT--------------NFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eeccc--------------cCcceeccccccCceeEeccc
Confidence            99999999865445788999999999999876432111  11111              346777777776542222   


Q ss_pred             eecCeEE---------EEEccCCCcceEEEecccCccc
Q 015290          345 RDYMNLK---------LWDIRMDSTPVATFKIHEHLRP  373 (409)
Q Consensus       345 g~~~~v~---------iwd~~~~~~~~~~~~~~~~~~~  373 (409)
                      .++..+.         .|+.....+++..|.||...+.
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~  303 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL  303 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence            1223333         3454444578999999998763

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.91  E-value=4.3e-08  Score=81.24  Aligned_cols=222  Identities=10%  Similarity=0.090  Sum_probs=147.6

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC-ceeeeeeccCCCccccccccccccc
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEK  171 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  171 (409)
                      ++..++||.            +.|++....  |...-+++++.|.++|+|--++ ++.-...                  
T Consensus        16 ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wpsI------------------   63 (404)
T KOG1409|consen   16 LLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWPSI------------------   63 (404)
T ss_pred             hhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCchh------------------
Confidence            456678888            677777663  5666799999999999996443 2221111                  


Q ss_pred             CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC
Q 015290          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (409)
                                                             .   ..-..+++++.+.++...|+.| .+|++.-+.+...-
T Consensus        64 ---------------------------------------~---~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf  101 (404)
T KOG1409|consen   64 ---------------------------------------Y---HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF  101 (404)
T ss_pred             ---------------------------------------h---hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence                                                   0   2234567899999999999999 99999888776221


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc--------------cc----------
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--------------HS----------  306 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------~~----------  306 (409)
                      .....    +.....|...+..+.|+-.. ..+++.+.|..+.---.+.+....              -.          
T Consensus       102 nkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq  176 (404)
T KOG1409|consen  102 NKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ  176 (404)
T ss_pred             hhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence            11111    12256788999999998776 788888888765433333321100              00          


Q ss_pred             cccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCcc
Q 015290          307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  385 (409)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (409)
                      +..+..-.........+.+|.+.+.+++|.|..+.|.+|. |..+.+||+--.......+.+|...+             
T Consensus       177 vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV-------------  243 (404)
T KOG1409|consen  177 ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV-------------  243 (404)
T ss_pred             eEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh-------------
Confidence            0111111123334556789999999999999999999996 59999999963233455666777765             


Q ss_pred             ceeeEEEcCCCCeEEEcccCCCC
Q 015290          386 DKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       386 ~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                        ..+..-+--+.|.+++.||.|
T Consensus       244 --~~l~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  244 --QALSYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             --hhhhhhhhheeeeeccCCCeE
Confidence              355556666778888888865

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=6.2e-09  Score=91.47  Aligned_cols=178  Identities=15%  Similarity=0.155  Sum_probs=120.6

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.++|.+++--.+.+-+++++.|.+|++|.+......      +              ....+.-+++.|.      
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------~--------------~tsaCQfTY~aHk------  784 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------I--------------GTSACQFTYQAHK------  784 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------c--------------ccceeeeEhhhcc------
Confidence            3458899998887777788999999999999998743210      0              0112455678888      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            .+|.++.|.  .+-++++  +.|+-|.+||.--+...........                             
T Consensus       785 ------k~i~~igfL--~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk-----------------------------  825 (1034)
T KOG4190|consen  785 ------KPIHDIGFL--ADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPK-----------------------------  825 (1034)
T ss_pred             ------Ccccceeee--eccceee--eccCcceeecccccchhHhhhcCcc-----------------------------
Confidence                  899999995  5655554  4578899999876654432111000                             


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                                                 .+..+.|.|+.- -+...++.|  ...+++++|.+ .......+.+.  ...+
T Consensus       826 ---------------------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVc--na~~  874 (1034)
T KOG4190|consen  826 ---------------------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDAR-SCEWTCELKVC--NAPG  874 (1034)
T ss_pred             ---------------------------cCCCceeEeccc-Ccchheeeeccchhhheeeecc-cccceeeEEec--cCCC
Confidence                                       122333444421 133444444  78899999998 55444433222  1345


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  302 (409)
                      ....+.+++..+.| +.++.+-..|+|.+.|.|+|+.
T Consensus       875 Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  875 PNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             CchheeEEEeccCc-chhhHHhcCCcEEEEecCCCce
Confidence            56778999999999 9999999999999999999975

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=7.3e-09  Score=59.48  Aligned_cols=39  Identities=23%  Similarity=0.592  Sum_probs=34.7

Q ss_pred             eeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290           14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (409)
Q Consensus        14 w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~   60 (409)
                      |++.+.+..        |.+.|++|+|+|++.+||+|+.|+.|++||
T Consensus         1 g~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            556666555        899999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=4.2e-07  Score=82.70  Aligned_cols=244  Identities=13%  Similarity=0.138  Sum_probs=150.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|...|.-+.|+...+.|-+...+|.|.+|-+-.+.-                           ..++......      
T Consensus        69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW---------------------------~EEMiNnRnK------  115 (1189)
T KOG2041|consen   69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW---------------------------CEEMINNRNK------  115 (1189)
T ss_pred             cCcceEEEEEeccccccccccCCCceEEEEeeecccH---------------------------HHHHhhCcCc------
Confidence            4999999999999999999999999999999876652                           1111111111      


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++|  +.+|+.++..-.||.|.+=.++++++--. +             ........+.++++...+..+.
T Consensus       116 ----SvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNRIwgK-e-------------Lkg~~l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen  116 ----SVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNRIWGK-E-------------LKGQLLAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             ----cEEEEEEE--cCCCcEEEEEEccCCEEEEeeccceecch-h-------------cchheccceeecccHHHHHhhh
Confidence                57999999  79999999999999988766654432110 0             0001112334444444433333


Q ss_pred             ccccceeEEEecCCcccc----eeeeee---ccccccceeEEEe--------CCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290          190 WTENMATKIANVGNSVHA----RCQKVY---PHAHDFNINSISN--------NSDCETFVSA-DDLRINLWNLEISDQCF  253 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~----~~~~~~---~~~~~~~v~~l~~--------~~~~~~l~~~-~d~~i~lwd~~~~~~~~  253 (409)
                      -  +|...++|.+.....    .|....   +......|..+.|        -|+...|+.+ .+|.+.+-.-.....+.
T Consensus       176 a--nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  176 A--NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             c--CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence            2  678888888754322    221111   1112223445555        3578899999 99999887665222222


Q ss_pred             eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---------eEEEEeCCCccccccccccccccccccCCccccc
Q 015290          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (409)
                       ++        ...-.+..+.|+++| ..|+.++.+.         .|.+|..-. .    ....             ++
T Consensus       254 -v~--------dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~----i~gt-------------lk  305 (1189)
T KOG2041|consen  254 -VV--------DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H----IVGT-------------LK  305 (1189)
T ss_pred             -EE--------ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h----heEE-------------Ee
Confidence             21        122568899999999 9999887653         333333211 1    0122             22


Q ss_pred             ccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       325 ~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                      -....|++++|-..|-.+|.+-|+.|++=+++
T Consensus       306 vpg~~It~lsWEg~gLriA~AvdsfiyfanIR  337 (1189)
T KOG2041|consen  306 VPGSCITGLSWEGTGLRIAIAVDSFIYFANIR  337 (1189)
T ss_pred             cCCceeeeeEEcCCceEEEEEecceEEEEeec
Confidence            22467888888887777777766777666655

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.84  E-value=7.8e-08  Score=76.72  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             ceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          220 NINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       220 ~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .|.+++-+|..+. +++| .||.+-+||.+....+...       +..|+..++.+-|+|..+..|++++.||.+..||.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-------l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-------LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-------HHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            4889999997655 4567 9999999999933222222       78899999999999998899999999999999998


Q ss_pred             CC
Q 015290          298 RQ  299 (409)
Q Consensus       298 ~~  299 (409)
                      .+
T Consensus       254 s~  255 (319)
T KOG4714|consen  254 ST  255 (319)
T ss_pred             CC
Confidence            75

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.84  E-value=6.6e-07  Score=71.89  Aligned_cols=168  Identities=14%  Similarity=0.067  Sum_probs=108.1

Q ss_pred             eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      +.++++  +++++.+++.+....|-.|.+........                                           
T Consensus       161 ~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~-------------------------------------------  195 (344)
T KOG4532|consen  161 QNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIE-------------------------------------------  195 (344)
T ss_pred             eeeeEE--cCCCceEEEecCCCcceEEEeCCccceee-------------------------------------------
Confidence            677788  78998998888888888888865432111                                           


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  274 (409)
                       ++              +.....+.-.+..|+.....+|++ +||++.|||++..+.+.....   .+-+.|.+.+..+.
T Consensus       196 -~~--------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---strp~hnGa~R~c~  257 (344)
T KOG4532|consen  196 -NI--------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS---STRPHHNGAFRVCR  257 (344)
T ss_pred             -ee--------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---ccCCCCCCceEEEE
Confidence             00              001222223577899999999999 999999999995554443321   12355899999999


Q ss_pred             EeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc-cceeeeEeccCCCEEEEeecCeEEE
Q 015290          275 FHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKL  352 (409)
Q Consensus       275 ~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~sg~~~~v~i  352 (409)
                      |++.|+ .+|...-.-+.+.+.|+|++.-+.. +.+.+.         .+..|. ..|..-.|+.++.-+.+.++-.+.=
T Consensus       258 Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d---------~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae  327 (344)
T KOG4532|consen  258 FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDD---------VERKHNTQHIFGTNFNNENESNDVKNELQGAE  327 (344)
T ss_pred             ecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCcc---------ccccccccccccccccCCCcccccccchhhhe
Confidence            998764 2455555567899999999764321 111111         011222 3477778888777666665545555


Q ss_pred             EEcc
Q 015290          353 WDIR  356 (409)
Q Consensus       353 wd~~  356 (409)
                      |++.
T Consensus       328 ~ni~  331 (344)
T KOG4532|consen  328 YNIL  331 (344)
T ss_pred             eecc
Confidence            6654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=6.9e-09  Score=96.10  Aligned_cols=199  Identities=15%  Similarity=0.259  Sum_probs=131.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |....+|++|+-+.++|++|+-.|.|+++++.++..                           .....+|.         
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---------------------------e~s~ncH~--------- 1143 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---------------------------EESVNCHQ--------- 1143 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccc---------------------------cccccccc---------
Confidence            678899999999999999999999999999998874                           24467777         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                         .+|+-+.=  +.+|..+++.+.-.  -..+|++..-                                         
T Consensus      1144 ---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~----------------------------------------- 1177 (1516)
T KOG1832|consen 1144 ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST----------------------------------------- 1177 (1516)
T ss_pred             ---cccccccc--cCCcceeeeeccccCchHHHhccccc-----------------------------------------
Confidence               78888875  78888777654322  4567877541                                         


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                        ..+...| .    .-.++.|+...+.-+.| ......+||++ +...+.++-..   ..+..
T Consensus      1178 ------------------~~~~Hsf-~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq-T~~~l~tylt~---~~~~~ 1230 (1516)
T KOG1832|consen 1178 ------------------GGPRHSF-D----EDKAVKFSNSLQFRALGTEADDALLYDVQ-TCSPLQTYLTD---TVTSS 1230 (1516)
T ss_pred             ------------------cCccccc-c----ccceeehhhhHHHHHhcccccceEEEecc-cCcHHHHhcCc---chhhh
Confidence                              1222222 1    22467887765555666 66678899999 44443331000   11112


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..-+.+.|+|+. .+++   .||  .+||+|..+-    ++.|..              -..-..-.|+|.|.-++.-+ 
T Consensus      1231 y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~--------------ft~~~~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQ--------------FTDYGGGGFHPSGNEVIINS- 1285 (1516)
T ss_pred             hhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhh--------------heecccccccCCCceEEeec-
Confidence            223678899997 6665   566  4899998643    344443              11223457999998887766 


Q ss_pred             CeEEEEEccCCCcceEEEec
Q 015290          348 MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~  367 (409)
                         .|||+++ -+.++....
T Consensus      1286 ---EIwD~RT-F~lLh~VP~ 1301 (1516)
T KOG1832|consen 1286 ---EIWDMRT-FKLLHSVPS 1301 (1516)
T ss_pred             ---hhhhhHH-HHHHhcCcc
Confidence               6899987 566655443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=1.4e-07  Score=79.84  Aligned_cols=116  Identities=18%  Similarity=0.243  Sum_probs=79.7

Q ss_pred             EEEeCCCCCeEEEe----cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290          223 SISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       223 ~l~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~  298 (409)
                      ++.+..+......+    +...+.+|... .+.+.        .+-+|-+.++.++|+||+ +.++++..|..|++-...
T Consensus       112 ai~~~~~~~sv~v~dkagD~~~~di~s~~-~~~~~--------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  112 AISFIREDTSVLVADKAGDVYSFDILSAD-SGRCE--------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYP  181 (390)
T ss_pred             eeeeeeccceEEEEeecCCceeeeeeccc-ccCcc--------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecC
Confidence            44444444444333    45556666655 22222        257899999999999999 999999999999987654


Q ss_pred             CccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ecCeEEEEEccCCCcceEEEe
Q 015290          299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~~~~~  366 (409)
                      ..-.    +            .+.+-||..-|..++.-++. .|++| +|++|++||+.+ ++.+.++.
T Consensus       182 a~f~----I------------esfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d  232 (390)
T KOG3914|consen  182 ATFV----I------------ESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS-GKLLDTCD  232 (390)
T ss_pred             cccc----h------------hhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc-CCcccccc
Confidence            4211    1            12234678899999998764 45665 579999999987 77776654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.78  E-value=3.3e-08  Score=98.22  Aligned_cols=163  Identities=17%  Similarity=0.199  Sum_probs=120.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|.++.-|  |...+.+||+.||.|++|....++...                                          
T Consensus      2209 ~~v~r~~sH--p~~~~Yltgs~dgsv~~~~w~~~~~v~------------------------------------------ 2244 (2439)
T KOG1064|consen 2209 ENVRRMTSH--PSDPYYLTGSQDGSVRMFEWGHGQQVV------------------------------------------ 2244 (2439)
T ss_pred             CceeeecCC--CCCceEEecCCCceEEEEeccCCCeEE------------------------------------------
Confidence            567777774  667789999999999999987664432                                          


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                          .|+.             .+. ..|+.+.|+.+|+.+..+ .||.+.+|... . +.+..       ...|......
T Consensus      2245 ----~~rt-------------~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p-k~~~s-------~qchnk~~~D 2297 (2439)
T KOG1064|consen 2245 ----CFRT-------------AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P-KPYTS-------WQCHNKALSD 2297 (2439)
T ss_pred             ----Eeec-------------cCc-chhhhhhhcccCCceeeeccCCceeecccC-C-cceec-------cccCCccccc
Confidence                2221             233 778899999999999999 99999999987 3 33322       5778888888


Q ss_pred             EEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          273 AEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      +.|-.   ..+++++   .++.+.+||..-...      ..-.|          ..|.+.++++++-|..++|++|+. |
T Consensus      2298 f~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------~s~v~----------~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2298 FRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------NSLVH----------TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             eeeee---hhhhccccCCCCCcccchhcccCcc------cceee----------eecCCCceEEEEcCcceEEEecCCcC
Confidence            88875   4566654   467899999654211      11110          346788999999999999999986 9


Q ss_pred             eEEEEEccCCCcceEEEec
Q 015290          349 NLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~  367 (409)
                      .|++||++. .+..+.++.
T Consensus      2359 ~v~l~D~rq-rql~h~~~~ 2376 (2439)
T KOG1064|consen 2359 EVCLFDIRQ-RQLRHTFQA 2376 (2439)
T ss_pred             cEEEeehHH-HHHHHHhhh
Confidence            999999985 666655543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.78  E-value=5e-06  Score=67.87  Aligned_cols=36  Identities=22%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  302 (409)
                      ....|..+..+||| +.||+...+|.|.+|++.+-++
T Consensus       228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence            35679999999999 9999999999999999987543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.73  E-value=7.2e-08  Score=55.24  Aligned_cols=38  Identities=29%  Similarity=0.799  Sum_probs=34.9

Q ss_pred             eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 015290           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (409)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd  143 (409)
                      +++..+.+|.            +.|++|+|  +|++.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence            4678899999            89999999  68899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=8.9e-06  Score=75.94  Aligned_cols=132  Identities=13%  Similarity=0.086  Sum_probs=87.0

Q ss_pred             cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      ...++.+++++.+-+.+|+| .+|.|..+.-+..+......    .-.....++|+.+.+..++ +.++....-..|.+|
T Consensus       124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y  198 (933)
T KOG2114|consen  124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLY  198 (933)
T ss_pred             CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce----eeeccCCCCceeeEEecCC-ceeEEEEecceeEEE
Confidence            46678899999999999999 99999988643211111110    1123456789999999998 553333344568999


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEe-cccC
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEH  370 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~-~~~~  370 (409)
                      .+.+..+.   .+..             ..|..+++|.++++....+++++...|.+||..- .++...+. ++..
T Consensus       199 ~l~gr~p~---~~~l-------------d~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  199 SLSGRTPS---LKVL-------------DNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEKK  257 (933)
T ss_pred             EecCCCcc---eeee-------------ccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCeE
Confidence            88743210   1222             2335688999998866546666668999999873 55556666 5554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.71  E-value=7.8e-06  Score=68.80  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=74.6

Q ss_pred             ccccceeEEEeCCCCCeEEEe-cCCe-------EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEE-EEE
Q 015290          216 AHDFNINSISNNSDCETFVSA-DDLR-------INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS  286 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~-~d~~-------i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~  286 (409)
                      -|+..|..|++.++|..++.. ..|.       +-+++.   +..+..+............++-+|++++++ .++ +|+
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts  235 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS  235 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence            467789999999999777665 4332       333433   333444444433344566889999999998 655 555


Q ss_pred             eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  354 (409)
Q Consensus       287 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd  354 (409)
                      -..+.+.+||..+++..    .....               ..+..++-.+++ ++++.+.|.+...+
T Consensus       236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence            57889999999998752    22222               356777777776 77766656544333

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=6.8e-08  Score=80.14  Aligned_cols=133  Identities=12%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC----CceeeeeecCCCcCcCccCceEEEEEeC-CCCCEEEEEeCCC
Q 015290          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG  290 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~s~dg  290 (409)
                      ..+.|.++.|...++.+..| .+|.|..+|++..    +.+...        --|.+.|+++..-. ++ ++|++.+.+|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--------lyh~Ssvtslq~Lq~s~-q~LmaS~M~g  321 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--------LYHDSSVTSLQILQFSQ-QKLMASDMTG  321 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--------EEcCcchhhhhhhcccc-ceEeeccCcC
Confidence            45678888999889999999 9999999999844    223322        23788899988776 55 8899999999


Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEeccc
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      .|++||.|.-+ +...+..+++|-..           ..-.-+-..+....+++++ |...|||.++. +.++.+++...
T Consensus       322 kikLyD~R~~K-~~~~V~qYeGHvN~-----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~  388 (425)
T KOG2695|consen  322 KIKLYDLRATK-CKKSVMQYEGHVNL-----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY  388 (425)
T ss_pred             ceeEeeehhhh-cccceeeeeccccc-----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence            99999998755 33334455553111           1112233455556666665 59999999985 88888887655


Q ss_pred             Cc
Q 015290          370 HL  371 (409)
Q Consensus       370 ~~  371 (409)
                      ..
T Consensus       389 s~  390 (425)
T KOG2695|consen  389 SA  390 (425)
T ss_pred             cc
Confidence            44

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.1e-06  Score=81.18  Aligned_cols=194  Identities=16%  Similarity=0.196  Sum_probs=128.8

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+...+.++|++++  +++||-|..+|.|.+++.+...                             .....|+     
T Consensus        34 ~~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s-----   77 (846)
T KOG2066|consen   34 KNFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS-----   77 (846)
T ss_pred             HHHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc-----
Confidence            334457889999998  7899999999999999987542                             1223343     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             ..        ..+|.++++|+.||+|.|--+.+.+.....                                 
T Consensus        78 -------~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~---------------------------------  109 (846)
T KOG2066|consen   78 -------SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQY---------------------------------  109 (846)
T ss_pred             -------cc--------ccCCceEEEecCCCcEEEeeccCCccceeE---------------------------------
Confidence                   11        368999999999999999877665443321                                 


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-----CCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                                   .-..++.+++++|+     .+.+++| ..| +.++.-+.-+....+.    
T Consensus       110 -----------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~----  155 (846)
T KOG2066|consen  110 -----------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV----  155 (846)
T ss_pred             -----------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee----
Confidence                                         23457889999997     5678887 666 7777655323322221    


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                        +..-.++|.++.|.  | +++|-++.+| |++||+..++..    ..... + .+.++.     ......+.|.++. 
T Consensus       156 --l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l----~~i~~-p-~~~~R~-----e~fpphl~W~~~~-  217 (846)
T KOG2066|consen  156 --LSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRL----TNIPP-P-SQSVRP-----ELFPPHLHWQDED-  217 (846)
T ss_pred             --eecCccceEEEEec--C-cEEEEecCCC-cEEEecccccee----eccCC-C-CCCCCc-----ccCCCceEecCCC-
Confidence              45567899999998  5 7898888888 899999886532    11111 0 011110     1223457888765 


Q ss_pred             EEEEeecCeEEEEEcc
Q 015290          341 HLLSRDYMNLKLWDIR  356 (409)
Q Consensus       341 ~l~sg~~~~v~iwd~~  356 (409)
                      .|+.|-..+|+|..++
T Consensus       218 ~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  218 RLVIGWGDSVKICSIK  233 (846)
T ss_pred             eEEEecCCeEEEEEEe
Confidence            4555544677777776

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.63  E-value=2.5e-07  Score=84.38  Aligned_cols=219  Identities=15%  Similarity=0.158  Sum_probs=137.1

Q ss_pred             CCccccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           25 PDEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        25 ~~~~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      .....+|...|+.+.|+|. ...+|+++.|-.+..||+.....                          ++..+..-.  
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------------------------p~ys~~~w~--  158 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------------------------PFYSTSSWR--  158 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------------------ceeeeeccc--
Confidence            3445568999999999994 46899999999999999886542                          233222222  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                                .....|+|.  .....+++.+..+.|.+||.+.+..                                  
T Consensus       159 ----------s~asqVkwn--yk~p~vlasshg~~i~vwd~r~gs~----------------------------------  192 (1081)
T KOG0309|consen  159 ----------SAASQVKWN--YKDPNVLASSHGNDIFVWDLRKGST----------------------------------  192 (1081)
T ss_pred             ----------ccCceeeec--ccCcchhhhccCCceEEEeccCCCc----------------------------------
Confidence                      467788994  4434455556667899999986522                                  


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                                  +..|             . ++|-..|+.++|+.- -..+.+. .|++|+.||.......-..      
T Consensus       193 ------------pl~s-------------~-K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~------  240 (1081)
T KOG0309|consen  193 ------------PLCS-------------L-KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR------  240 (1081)
T ss_pred             ------------ceEE-------------e-cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce------
Confidence                        1111             1 567778888888764 2345556 9999999998733221111      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                       ......+|.--.+.|-|+-+.+-- -.+..+.+++.++..      ..+.. ...+.+...|.||...|....|-..+.
T Consensus       241 -~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d------~e~n~-~~~~~pVh~F~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  241 -TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD------LEWNV-FDLNTPVHTFVGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             -eccccCcceeccccccCceeEeccccCCeeeeeccccchh------hhhcc-ccCCcceeeecCcchHHHHHhhhhccc
Confidence             122345677777778763232222 223355666655432      22333 334455667888888887766654322


Q ss_pred             ----------EEEEee-cCeEEEEEccC
Q 015290          341 ----------HLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       341 ----------~l~sg~-~~~v~iwd~~~  357 (409)
                                .|++-+ |..+++|-+..
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeeccH
Confidence                      467766 59999998753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.62  E-value=8.7e-06  Score=75.11  Aligned_cols=251  Identities=15%  Similarity=0.159  Sum_probs=153.9

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...-.++.|+|.| +||.|+. ..|.+-|..+.+                           .+..+.-|.          
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q---------------------------~iqsie~h~----------   55 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ---------------------------LIQSIELHQ----------   55 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhh---------------------------hhhccccCc----------
Confidence            3446789999987 7888875 478888877554                           466777888          


Q ss_pred             eccceEEEEEEecC--------C--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC
Q 015290          112 IEEKINRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       112 ~~~~v~~l~~~~s~--------~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                        ..|+.+.|.|.|        .  .-.|+++...|.|.+||...+..+..                             
T Consensus        56 --s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-----------------------------  104 (1062)
T KOG1912|consen   56 --SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-----------------------------  104 (1062)
T ss_pred             --cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-----------------------------
Confidence              899999998622        1  12456677789999999876543322                             


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC---CC-CeEEEe-cCCeEEEEEccCCCceeeee
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DC-ETFVSA-DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (409)
                                                      +..+.+++..+.|-+   +. ..|+.- ....+.+|+.. +++.+.. 
T Consensus       105 --------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-tG~k~Wk-  150 (1062)
T KOG1912|consen  105 --------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-TGEKFWK-  150 (1062)
T ss_pred             --------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-CCceeec-
Confidence                                            145666777777754   34 344444 78899999998 6665544 


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccc---ccccc---------CCccccc
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD---AAESH---------GSKSFFT  324 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~  324 (409)
                            .........++.++|-.++.|..-+..|.+.+-+.-..+......+.+..   |.+.+         ...+.-.
T Consensus       151 ------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~  224 (1062)
T KOG1912|consen  151 ------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP  224 (1062)
T ss_pred             ------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence                  23334556779999987677777778888877765543333222222222   11100         0000000


Q ss_pred             cc---ccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC--e
Q 015290          325 EI---IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--H  398 (409)
Q Consensus       325 ~~---~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~  398 (409)
                      ..   ......++|+|.-+.++-.. ...+.++|++- ..++.+..-..+...               -+.|-|+++  .
T Consensus       225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak---------------fv~vlP~~~rd~  288 (1062)
T KOG1912|consen  225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK---------------FVDVLPDPRRDA  288 (1062)
T ss_pred             cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc---------------eeEeccCCCcce
Confidence            00   01123467888765444443 48899999985 677766654443221               366666654  5


Q ss_pred             EEEcccCCCC
Q 015290          399 FATGSYRRDN  408 (409)
Q Consensus       399 l~s~s~dg~i  408 (409)
                      |.+.-.||.+
T Consensus       289 LfclH~nG~l  298 (1062)
T KOG1912|consen  289 LFCLHSNGRL  298 (1062)
T ss_pred             EEEEecCCeE
Confidence            7777777654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=1.1e-06  Score=72.10  Aligned_cols=245  Identities=15%  Similarity=0.186  Sum_probs=130.7

Q ss_pred             CCcEEEEEECCCC--CEEEEEecCCeEEEEeccCCcCCCCccc---------------hhhhhhhcccccccCCCceeee
Q 015290           32 VDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHI---------------SRSELEKQMDFTSTSHPEYRYK   94 (409)
Q Consensus        32 ~~~v~~v~~~~~~--~~la~~~~dg~i~iw~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~   94 (409)
                      ..+|..+.|..++  ..++..+.|.+|++|.+.......+...               ..+++..++..     -.++.+
T Consensus        85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls-----~hd~ii  159 (460)
T COG5170          85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLS-----EHDEII  159 (460)
T ss_pred             HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccc-----ccceEE
Confidence            5689999998754  3455666899999999876532211100               11111111110     011111


Q ss_pred             ee------ecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc
Q 015290           95 TE------FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (409)
Q Consensus        95 ~~------~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (409)
                      ..      -..|.            --|.++.|  +.|.+.++++ .|=.|.+|++.-.                     
T Consensus       160 aa~p~rvyaNaH~------------yhiNSiS~--NsD~et~lSa-DdLrINLWnl~i~---------------------  203 (460)
T COG5170         160 AAKPCRVYANAHP------------YHINSISF--NSDKETLLSA-DDLRINLWNLEII---------------------  203 (460)
T ss_pred             Eeccceeccccce------------eEeeeeee--cCchheeeec-cceeeeecccccc---------------------
Confidence            11      13344            67899999  5666555554 5677999987632                     


Q ss_pred             cccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEc
Q 015290          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNL  246 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~  246 (409)
                                              |+...+-|+....        ......-|++..|+|.. ..+..+ ..|.|++-|+
T Consensus       204 ------------------------D~sFnIVDiKP~n--------meeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         204 ------------------------DGSFNIVDIKPHN--------MEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             ------------------------CCceEEEeccCcc--------HHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence                                    2333333332100        01223457788899874 333344 8999999999


Q ss_pred             cCCCceeee---ee--cCC---CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC
Q 015290          247 EISDQCFNI---VD--MKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (409)
Q Consensus       247 ~~~~~~~~~---~~--~~~---~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  318 (409)
                      +...-+...   +.  +.+   .-+.+-...|..+.|+++| +++++-+. -++++||.+..+.+..   +...|.....
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pik---Ti~~h~~l~~  326 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPIK---TIPMHCDLMD  326 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccCCce---eechHHHHHH
Confidence            843222111   00  000   0122234568889999999 88886543 5799999998665433   2222111000


Q ss_pred             Cc-cccc-ccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290          319 SK-SFFT-EIIASISDIKFANDGQHLLSRDY-MNLKLWD  354 (409)
Q Consensus       319 ~~-~~~~-~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd  354 (409)
                      .. ..+. +-.-.-..+.||.|.+.+.+|+. +..-+|-
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            00 0000 00011234678877777777765 5555554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=1.3e-05  Score=74.12  Aligned_cols=85  Identities=15%  Similarity=0.284  Sum_probs=63.8

Q ss_pred             CCCcEEEEEECCCC------------CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec
Q 015290           31 DVDIVSAIEFDKTG------------DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ   98 (409)
Q Consensus        31 h~~~v~~v~~~~~~------------~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (409)
                      |...|+.+.|.|-.            -+||++...|.|.+||+..+..                           +..+.
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------------------~~~l~  106 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------------------INWLS  106 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------------------hhhhc
Confidence            78999999999831            2578888999999999987653                           33456


Q ss_pred             CCCccccccccceeccceEEEEEEecCC-C-CEEEEEeCCCeEEEEEcCCceeeeeec
Q 015290           99 SHEPEFDYLKSLEIEEKINRVRWCAAPN-G-SMFILSTNDKTIKLWKVRDQKVKKIKE  154 (409)
Q Consensus        99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~  154 (409)
                      .|.            .+|..++|.|..+ + ..|++-....++.+|+..+|+......
T Consensus       107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen  107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence            666            7899999988443 3 345555677899999999887665443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=4.7e-07  Score=75.30  Aligned_cols=148  Identities=18%  Similarity=0.228  Sum_probs=97.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+..|.++.|...+.++..|..+|.|..+|+.....                                |..   .+...+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--------------------------------G~~---~~a~rl  295 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--------------------------------GNG---WCAQRL  295 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--------------------------------CCC---cceEEE
Confidence            456788999998889999999999999999876532                                111   112233


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      -|+..|+++... ..++++|++++.+|+|++||++--+...                                       
T Consensus       296 yh~Ssvtslq~L-q~s~q~LmaS~M~gkikLyD~R~~K~~~---------------------------------------  335 (425)
T KOG2695|consen  296 YHDSSVTSLQIL-QFSQQKLMASDMTGKIKLYDLRATKCKK---------------------------------------  335 (425)
T ss_pred             EcCcchhhhhhh-ccccceEeeccCcCceeEeeehhhhccc---------------------------------------
Confidence            344789998875 3478899999999999999997554421                                       


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeE--EEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINS--ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                        .++.+ .+|-..-.-  +.+++....++++ +|...+||.++ .+..+.++..+   .....
T Consensus       336 ------------------~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~-~ghLl~tipf~---~s~~e  392 (425)
T KOG2695|consen  336 ------------------SVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD-SGHLLCTIPFP---YSASE  392 (425)
T ss_pred             ------------------ceeee-ecccccccccccccccccceEEEccCeeEEEEEecc-cCceeeccCCC---Ccccc
Confidence                              12222 344322222  2345556667777 99999999999 78877775333   22222


Q ss_pred             CceEEEEEe
Q 015290          268 EVITSAEFH  276 (409)
Q Consensus       268 ~~v~~~~~~  276 (409)
                      ..+.+++|.
T Consensus       393 ~d~~sv~~~  401 (425)
T KOG2695|consen  393 VDIPSVAFD  401 (425)
T ss_pred             ccccceehh
Confidence            334555554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=0.00014  Score=70.90  Aligned_cols=241  Identities=15%  Similarity=0.128  Sum_probs=135.6

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      +.|.++.|..+...++.+..+|.|.+-|.++...                             .+-|..           
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v-----------  108 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV-----------  108 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence            6899999999999999999999999998876652                             122221           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceeeccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEWT  191 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  191 (409)
                      +..|.+++|  |||.+.++..+..+++.+..- +-..........        -....+..+...|-. ..++-...+. 
T Consensus       109 d~GI~aasw--S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~--------d~~~~sk~v~VGwGrkeTqfrgs~gr-  176 (1265)
T KOG1920|consen  109 DNGISAASW--SPDEELLALITGRQTLLFMTK-DFEPIAEKPLDA--------DDERKSKFVNVGWGRKETQFRGSEGR-  176 (1265)
T ss_pred             cCceEEEee--cCCCcEEEEEeCCcEEEEEec-cccchhcccccc--------ccccccccceecccccceeeecchhh-
Confidence            178999999  899999999999888866432 111111111000        011112222222211 1111111110 


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-----ecC-CeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-----ADD-LRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-----~~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                          ....+.....  +....  ....+.=+++.|--||+++++     ..+ ..|++||.+  +..-.+       -..
T Consensus       177 ----~~~~~~~~~e--k~~~~--~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~-------se~  239 (1265)
T KOG1920|consen  177 ----QAARQKIEKE--KALEQ--IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNST-------SEP  239 (1265)
T ss_pred             ----hccccccccc--ccccc--hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcc-------cCc
Confidence                0000000000  00000  001122356899999999997     234 799999977  332221       111


Q ss_pred             ccCceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          266 LTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      -.+.-.+++|-|.| .++++-.   .|+.|.+|.-..-. .....-.+..             ....+..++|+.++..|
T Consensus       240 ~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~-------------de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  240 VEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPL-------------DEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             ccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcc-ccccccCCcc-------------cccchheeeecCCCCce
Confidence            22333589999999 8888753   45678899754321 1100001111             12348999999999999


Q ss_pred             EEe---ec-CeEEEEEccC
Q 015290          343 LSR---DY-MNLKLWDIRM  357 (409)
Q Consensus       343 ~sg---~~-~~v~iwd~~~  357 (409)
                      |+-   .. ..|++|-+..
T Consensus       305 Av~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eeeecccccceEEEEEecC
Confidence            973   23 4599998753

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.47  E-value=8.7e-07  Score=70.89  Aligned_cols=76  Identities=17%  Similarity=0.267  Sum_probs=64.7

Q ss_pred             CCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+.|++++-+| ...++++|+.||.+-+||......                          +...++.|+         
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------------p~S~l~ahk---------  223 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------------PVSLLKAHK---------  223 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------------hHHHHHHhh---------
Confidence            45699999999 456778888999999999987653                          456688898         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD  146 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~  146 (409)
                         .+|+.+.|+| .++..|++++.||.+..||..+
T Consensus       224 ---~~i~eV~FHp-k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  224 ---AEIWEVHFHP-KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ---hhhhheeccC-CCchheeEecCCCcEEEEcCCC
Confidence               8999999997 7788999999999999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.46  E-value=1.7e-05  Score=71.45  Aligned_cols=110  Identities=17%  Similarity=0.224  Sum_probs=76.8

Q ss_pred             cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      -.....+.+.+++|+.+.++.| .||+|.+||.. .+... .        ....-.++.++|+|+| .++++|+..|.+.
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~-~--------~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ  324 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTL-L--------AKAEFIPTLIAWHPDG-AIFVVGSEQGELQ  324 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcC-CCeee-e--------eeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence            4577889999999999999999 99999999987 33222 1        2234557899999999 9999999999999


Q ss_pred             EEeCCCccccccccccccccccccCCccc-----ccccccceeeeEeccCCCE
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSF-----FTEIIASISDIKFANDGQH  341 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~~  341 (409)
                      +||+.-+...   .+.+..   +..+..+     .-.+...+..+.|.+....
T Consensus       325 ~FD~ALspi~---~qLlsE---d~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~  371 (545)
T PF11768_consen  325 CFDMALSPIK---MQLLSE---DATPKSTLQLSKYFRVSSSLVHIQWAPAPQL  371 (545)
T ss_pred             EEEeecCccc---eeeccc---cCCCccEEeeehhccCcchhheeEeccCCCc
Confidence            9998765432   122211   2222221     1134556778888865433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.45  E-value=9.9e-05  Score=66.85  Aligned_cols=131  Identities=15%  Similarity=0.048  Sum_probs=77.5

Q ss_pred             CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccc
Q 015290          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (409)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  308 (409)
                      +..++.+ .+|.+..||.. +++.+....     ..    .......  .+ ..++.++.+|.+..+|..+++..     
T Consensus       241 ~~~vy~~~~~g~l~a~d~~-tG~~~W~~~-----~~----~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~-----  302 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLR-SGRVLWKRD-----AS----SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSEL-----  302 (377)
T ss_pred             CCEEEEEEcCCEEEEEECC-CCcEEEeec-----cC----CccCceE--eC-CEEEEECCCCeEEEEECCCCcEE-----
Confidence            4466666 89999999998 665544321     11    1112222  34 56777888999999999888642     


Q ss_pred             cccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (409)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (409)
                       ++. ...       .  .........  .+..|++++ +|.|+++|..+ ++.+..++.+...+.              
T Consensus       303 -W~~-~~~-------~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~--------------  354 (377)
T TIGR03300       303 -WKN-DEL-------K--YRQLTAPAV--VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIA--------------  354 (377)
T ss_pred             -Ecc-ccc-------c--CCccccCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccc--------------
Confidence             221 000       0  001112222  355777776 49999999986 888888876554321              


Q ss_pred             eeEEEcCCCCeEEEcccCCCC
Q 015290          388 FECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       388 ~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ...++. ++ .|+.++.||.|
T Consensus       355 ~sp~~~-~~-~l~v~~~dG~l  373 (377)
T TIGR03300       355 SPPVVV-GD-GLLVQTRDGDL  373 (377)
T ss_pred             cCCEEE-CC-EEEEEeCCceE
Confidence            122222 33 47788888865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2.1e-05  Score=67.17  Aligned_cols=79  Identities=8%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             ccCCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..|...|..++|+|..+ ++..++.+..|+|.|+++..                           .+..+..|.      
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---------------------------~vssy~a~~------  236 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---------------------------VVSSYIAYN------  236 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccce---------------------------eeeheeccC------
Confidence            34788999999999776 78889999999999998765                           244455554      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  148 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  148 (409)
                             .+++++|.- .+.++++.|...|.|.+||++..+
T Consensus       237 -------~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  237 -------QIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             -------Cceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence                   899999952 445678888999999999998543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=4.7e-07  Score=84.41  Aligned_cols=161  Identities=14%  Similarity=0.219  Sum_probs=111.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..-+|++|  +.+.+.|+.|+..|.|+++++.+|.....                                         
T Consensus      1102 ~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s----------------------------------------- 1138 (1516)
T KOG1832|consen 1102 ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES----------------------------------------- 1138 (1516)
T ss_pred             cceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc-----------------------------------------
Confidence            78999999  78889999999999999999998865432                                         


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC-eEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                          .++|+..|+.+.-+.+|..+++.  ... -..+|++.......+.+           ..-
T Consensus      1139 --------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------~ed 1187 (1516)
T KOG1832|consen 1139 --------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF-----------DED 1187 (1516)
T ss_pred             --------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc-----------ccc
Confidence                                16899999999999999888765  333 56899998555544442           223


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeE
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v  350 (409)
                      .++.|+... +.-+.|.......+||+.++..+..   .+.. .         .+....-+...|+|+..+++--+    
T Consensus      1188 ~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~---------~~~~y~~n~a~FsP~D~LIlndG---- 1249 (1516)
T KOG1832|consen 1188 KAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-T---------VTSSYSNNLAHFSPCDTLILNDG---- 1249 (1516)
T ss_pred             ceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-c---------hhhhhhccccccCCCcceEeeCc----
Confidence            578888765 4444455556689999999765432   1222 0         00122347789999988776433    


Q ss_pred             EEEEccCCCcceEEEec
Q 015290          351 KLWDIRMDSTPVATFKI  367 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~  367 (409)
                      .+||++. .+.++.|..
T Consensus      1250 vLWDvR~-~~aIh~FD~ 1265 (1516)
T KOG1832|consen 1250 VLWDVRI-PEAIHRFDQ 1265 (1516)
T ss_pred             eeeeecc-HHHHhhhhh
Confidence            6899986 455555543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.43  E-value=0.00016  Score=65.48  Aligned_cols=228  Identities=13%  Similarity=0.073  Sum_probs=119.2

Q ss_pred             CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce-EEEEE
Q 015290           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI-NRVRW  121 (409)
Q Consensus        43 ~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v-~~l~~  121 (409)
                      .+..+++++.+|.|.-+|..+++.                           +-...-..             .+ ..+. 
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~---------------------------~W~~~~~~-------------~~~~~p~-  102 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKR---------------------------LWRVDLDE-------------RLSGGVG-  102 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcE---------------------------eeeecCCC-------------CcccceE-
Confidence            356788888899999999888774                           11111111             11 1122 


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEec
Q 015290          122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  201 (409)
Q Consensus       122 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  201 (409)
                         .++..++.++.++.+..+|..+++..........  +.            .......+.++. +.  .++.+..+|.
T Consensus       103 ---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~------------~~p~v~~~~v~v-~~--~~g~l~a~d~  162 (377)
T TIGR03300       103 ---ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE--VL------------SPPLVANGLVVV-RT--NDGRLTALDA  162 (377)
T ss_pred             ---EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce--ee------------cCCEEECCEEEE-EC--CCCeEEEEEc
Confidence               3566888888999999999999988766442211  00            000000111111 11  2667888887


Q ss_pred             CCcccceeeeeeccccccce-----eEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc--Cc---e
Q 015290          202 GNSVHARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I  270 (409)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~---v  270 (409)
                      ++...   +..+ ......+     .+....  +..++.+ .++.+..+|.+ ++..+.......  ..+..  ..   +
T Consensus       163 ~tG~~---~W~~-~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~-tG~~~W~~~~~~--~~g~~~~~~~~~~  233 (377)
T TIGR03300       163 ATGER---LWTY-SRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQ-TGQPLWEQRVAL--PKGRTELERLVDV  233 (377)
T ss_pred             CCCce---eeEE-ccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEcc-CCCEeeeecccc--CCCCCchhhhhcc
Confidence            65332   2111 1110000     011111  2466677 88999999987 555443321110  00000  00   0


Q ss_pred             -EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          271 -TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       271 -~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                       .+..+.  + ..++.++.+|.+..||..+++.      .|.. ..            .....+..  ++..++.++ ++
T Consensus       234 ~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~------~W~~-~~------------~~~~~p~~--~~~~vyv~~~~G  289 (377)
T TIGR03300       234 DGDPVVD--G-GQVYAVSYQGRVAALDLRSGRV------LWKR-DA------------SSYQGPAV--DDNRLYVTDADG  289 (377)
T ss_pred             CCccEEE--C-CEEEEEEcCCEEEEEECCCCcE------EEee-cc------------CCccCceE--eCCEEEEECCCC
Confidence             111122  3 5677788899999999998864      2322 00            01111222  345666555 59


Q ss_pred             eEEEEEccCCCcceEEE
Q 015290          349 NLKLWDIRMDSTPVATF  365 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~  365 (409)
                      .|..+|..+ ++.+-..
T Consensus       290 ~l~~~d~~t-G~~~W~~  305 (377)
T TIGR03300       290 VVVALDRRS-GSELWKN  305 (377)
T ss_pred             eEEEEECCC-CcEEEcc
Confidence            999999975 6655443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.36  E-value=0.00035  Score=59.09  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             eeEEEeC-CCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcC-ccCceEEEEEeCCCCCEEEEEeCC--------C
Q 015290          221 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G  290 (409)
Q Consensus       221 v~~l~~~-~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d--------g  290 (409)
                      ...+++. +++ .++.+..+.+.++|.. .++........   ... .....+.++++|+| ++.++....        |
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCC-EEEEEEcCceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence            5667777 554 5555533445556887 55444333221   011 34567899999999 877765533        5


Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCC
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS  359 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~  359 (409)
                      .|..++.. ++..    .....              -...+.++|+|+++.|.... . +.|..+++...+
T Consensus       116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~  167 (246)
T PF08450_consen  116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG  167 (246)
T ss_dssp             EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccc
Confidence            57777766 3321    11111              23568899999999887664 4 899999986433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.33  E-value=4.3e-07  Score=81.64  Aligned_cols=210  Identities=15%  Similarity=0.208  Sum_probs=128.6

Q ss_pred             CCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        32 ~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      ...+.|++++-  +..++++|..+|.|.+-.+......                         -.....+|.        
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~a--------  102 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYA--------  102 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------cceeccccc--------
Confidence            45677888765  4458899999999999887654320                         011223444        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEE----eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILS----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                          ...++++|.+ -|...||.|    -.|-.+.|||+.++-........                             
T Consensus       103 ----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~-----------------------------  148 (783)
T KOG1008|consen  103 ----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL-----------------------------  148 (783)
T ss_pred             ----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccccc-----------------------------
Confidence                6889999963 566677766    23557889998766321111100                             


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                 |..+-.....+++|-.+.+.+++| ....+.++|++........+        
T Consensus       149 ---------------------------fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--------  193 (783)
T KOG1008|consen  149 ---------------------------FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--------  193 (783)
T ss_pred             ---------------------------cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--------
Confidence                                       001112223477888888999999 88899999998322222111        


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEe-CCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL  342 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l  342 (409)
                       .+..+..+..+|-.+.++++-. ||.|.+|| .++-+   ........ .+.+.        ...+..++|.|... .+
T Consensus       194 -nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---npl~~i~~-~~N~~--------~~~l~~~aycPtrtgll  259 (783)
T KOG1008|consen  194 -NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---NPLQIILR-NENKK--------PKQLFALAYCPTRTGLL  259 (783)
T ss_pred             -hhhhcccceecCCCCCceeccc-cCceeeccchhhhc---cHHHHHhh-CCCCc--------ccceeeEEeccCCcchh
Confidence             2335667888884438888765 99999999 44322   11222211 11111        12588999999643 44


Q ss_pred             EEee-c-CeEEEEEccC
Q 015290          343 LSRD-Y-MNLKLWDIRM  357 (409)
Q Consensus       343 ~sg~-~-~~v~iwd~~~  357 (409)
                      ++.. + ++|++||+..
T Consensus       260 a~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  260 AVLSRDSITIRLYDICV  276 (783)
T ss_pred             hhhccCcceEEEecccc
Confidence            5544 5 9999999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.27  E-value=0.0014  Score=55.14  Aligned_cols=196  Identities=12%  Similarity=0.023  Sum_probs=101.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (409)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (409)
                      +++..+++++.++.+..||..+++...........  .... ....+.+          ++..    .++.+..+|..+.
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~--~~~~-~~~~~~v----------~v~~----~~~~l~~~d~~tG   96 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI--SGAP-VVDGGRV----------YVGT----SDGSLYALDAKTG   96 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG--GSGE-EEETTEE----------EEEE----TTSEEEEEETTTS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc--ccee-eeccccc----------cccc----ceeeeEecccCCc
Confidence            35668888899999999999999887776542111  0000 0011111          1111    2557777776654


Q ss_pred             ccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc---cCceEEEEEeCCCC
Q 015290          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYC  280 (409)
Q Consensus       205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~  280 (409)
                      .........................+..++.+ .++.|..+|.+ +++.+............+   ...+..-....++ 
T Consensus        97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (238)
T PF13360_consen   97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-  174 (238)
T ss_dssp             CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-
T ss_pred             ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECC-
Confidence            33222111000000011122222237778888 89999999998 777765543321111100   0111222222333 


Q ss_pred             CEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCC
Q 015290          281 NLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  358 (409)
Q Consensus       281 ~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~  358 (409)
                       .++.++.++. +.+ |+.+++.      .+.. .            ...+.. ....++..|+.++ ++.|..||+++ 
T Consensus       175 -~v~~~~~~g~~~~~-d~~tg~~------~w~~-~------------~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t-  231 (238)
T PF13360_consen  175 -RVYVSSGDGRVVAV-DLATGEK------LWSK-P------------ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT-  231 (238)
T ss_dssp             -EEEEECCTSSEEEE-ETTTTEE------EEEE-C------------SS-ECE-CEECCCTEEEEEETTTEEEEEETTT-
T ss_pred             -EEEEEcCCCeEEEE-ECCCCCE------EEEe-c------------CCCccC-CceeeCCEEEEEeCCCEEEEEECCC-
Confidence             5555566664 555 9999863      2422 0            011222 1345677777776 59999999987 


Q ss_pred             Ccce
Q 015290          359 STPV  362 (409)
Q Consensus       359 ~~~~  362 (409)
                      ++.+
T Consensus       232 G~~~  235 (238)
T PF13360_consen  232 GKVV  235 (238)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            6543

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=6.5e-05  Score=65.18  Aligned_cols=230  Identities=8%  Similarity=-0.032  Sum_probs=127.6

Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                      .-|.+.|+.+.-   ...+++++++.||.++.|.-..-....+...          +....+.+.+...+-. .++....
T Consensus         6 ymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfVKh----------FraHL~~I~sl~~S~d-g~L~~Sv   71 (558)
T KOG0882|consen    6 YMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFVKH----------FRAHLGVILSLAVSYD-GWLFRSV   71 (558)
T ss_pred             hcccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeehhh----------hHHHHHHHHhhhcccc-ceeEeec
Confidence            344467777665   5567999999999999997654221111110          0111111111111111 1222221


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--CeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ...|..++++|+++......++..  -..+.+..+ .++..  ..++.+  .++.+.++|-.........+      -.-
T Consensus        72 ~d~Dhs~KvfDvEn~DminmiKL~--~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kkl  142 (558)
T KOG0882|consen   72 EDPDHSVKVFDVENFDMINMIKLV--DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKL  142 (558)
T ss_pred             cCcccceeEEEeeccchhhhcccc--cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------ccc
Confidence            223678889888764433333321  112222221 22221  134444  79999999988333222211      355


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |..+|..+.+.|-+ ..+++....|.|.-|.....-......-.+.. .... ..-.+..-.....++.|+|+|..+++-
T Consensus       143 H~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~-K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl  219 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL-KHET-DLYGFPKAKTEPTSFEFSPDGAQISTL  219 (558)
T ss_pred             ccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccc-cccc-hhhcccccccCccceEEccccCccccc
Confidence            88999999999999 99999999999999987631000000000111 0000 000111224567899999999999987


Q ss_pred             e-cCeEEEEEccCCCcceEEEe
Q 015290          346 D-YMNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~  366 (409)
                      + |..|++++.++ ++.++.+.
T Consensus       220 ~~DrkVR~F~~Kt-GklvqeiD  240 (558)
T KOG0882|consen  220 NPDRKVRGFVFKT-GKLVQEID  240 (558)
T ss_pred             CcccEEEEEEecc-chhhhhhh
Confidence            5 59999999986 66665553

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=8.8e-05  Score=63.45  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             cceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeee
Q 015290          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKK  151 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~  151 (409)
                      ..|.+++|  ||..+ ++..++.+++|+|.|+.+.....
T Consensus       194 ~~Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~~~vs  230 (463)
T KOG1645|consen  194 SFIRDLAF--SPFNEGLLGLASLGNKIKIMDLETSCVVS  230 (463)
T ss_pred             hhhhhhcc--CccccceeeeeccCceEEEEecccceeee
Confidence            78999999  55555 78889999999999998875543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.13  E-value=0.0018  Score=53.87  Aligned_cols=219  Identities=13%  Similarity=0.213  Sum_probs=108.2

Q ss_pred             CcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee--ecCCCcccccccc
Q 015290           33 DIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS  109 (409)
Q Consensus        33 ~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~  109 (409)
                      +.++.++|+|+. .++|+....+.|..++.++ +.                           ++.  +.+.         
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~v---------------------------lr~i~l~g~---------   64 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KV---------------------------LRRIPLDGF---------   64 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---------------------------EEEEE-SS----------
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CE---------------------------EEEEeCCCC---------
Confidence            459999999975 4667777778887777643 31                           222  3332         


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +..-.|++  -.++.++++.-.++.+.++++..........                                   
T Consensus        65 ----~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~-----------------------------------  103 (248)
T PF06977_consen   65 ----GDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRA-----------------------------------  103 (248)
T ss_dssp             ----SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EE-----------------------------------
T ss_pred             ----CCceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchh-----------------------------------
Confidence                35678888  3566666666678999988884321100000                                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC--CCceeeeeecCC-CcCcC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDD  265 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~--~~~~~~~~~~~~-~~~~~  265 (409)
                           .+.-+.+.          +...+...+-.++|+|.++.|+.+ ...-..+|.+..  ....+....... .....
T Consensus       104 -----~~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen  104 -----DVQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             -----EEEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             -----hceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence                 00000000          002345567899999998888888 766667777762  122222111100 00112


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ....+.+++++|...++++....+..|..+|. .|+..    ..+.. ..+   ...+...-...-.++|.++|++.++.
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~----~~~~L-~~g---~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVV----SSLSL-DRG---FHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EE----EEEE--STT---GGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEE----EEEEe-CCc---ccCcccccCCccEEEECCCCCEEEEc
Confidence            33457899999987577777778888999994 44421    22221 000   00000011356789999999766665


Q ss_pred             ecCeEEEE
Q 015290          346 DYMNLKLW  353 (409)
Q Consensus       346 ~~~~v~iw  353 (409)
                      --+..+++
T Consensus       240 EpNlfy~f  247 (248)
T PF06977_consen  240 EPNLFYRF  247 (248)
T ss_dssp             TTTEEEEE
T ss_pred             CCceEEEe
Confidence            43555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.12  E-value=8.7e-05  Score=68.09  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=103.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |...|.=-+++..+++++.|+.-|.+.+|+..+++..                          .....+-.         
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~~---------   76 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGAT---------   76 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCcc---------
Confidence            4555665667778999999999999999998877641                          11112222         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.+..+..  +++..++|.|+..|.|.++.++.........                   +                
T Consensus        77 ---~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~-------------------~----------------  116 (726)
T KOG3621|consen   77 ---GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDY-------------------V----------------  116 (726)
T ss_pred             ---ceEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCccee-------------------e----------------
Confidence               34444455  6777788888888999998877632211100                   0                


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                          .-.-..|...|++++|++++..+++| ..|.|.+-.+.. ..   .+..+...+..-.+.
T Consensus       117 --------------------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s-~~---~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen  117 --------------------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS-RQ---AFLSKSQEILSEDSE  172 (726)
T ss_pred             --------------------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech-hh---hhccccceeeccCcc
Confidence                                00014588999999999999999999 999999888873 11   111111223334566


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      |..+.+...  .+|++....  ..++++..+
T Consensus       173 IVQlD~~q~--~LLVStl~r--~~Lc~tE~e  199 (726)
T KOG3621|consen  173 IVQLDYLQS--YLLVSTLTR--CILCQTEAE  199 (726)
T ss_pred             eEEeecccc--eehHhhhhh--hheeecchh
Confidence            767766532  344443332  235555543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.11  E-value=9.8e-07  Score=79.44  Aligned_cols=156  Identities=17%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             cccccceeEEEeCC-CCCeEEEe-c----CCeEEEEEccCCC--ceeeeeecCCCcCcC-ccCceEEEEEeCCCCCEEEE
Q 015290          215 HAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISD--QCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAY  285 (409)
Q Consensus       215 ~~~~~~v~~l~~~~-~~~~l~~~-~----d~~i~lwd~~~~~--~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s  285 (409)
                      .++..+.++++|++ |.+.||+| .    |..+.|||+. ++  .+.....     +.+ ......+++|..+. +++.+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~-s~ltvPke~~~-----fs~~~l~gqns~cwlrd~-klvla  171 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN-SLLTVPKESPL-----FSSSTLDGQNSVCWLRDT-KLVLA  171 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecc-cccCCCccccc-----cccccccCccccccccCc-chhhc
Confidence            56777889999987 45778876 3    6689999998 43  1222111     222 23445689999887 89999


Q ss_pred             EeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeecCeEEEEE-ccCCCcceE
Q 015290          286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWD-IRMDSTPVA  363 (409)
Q Consensus       286 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~~~v~iwd-~~~~~~~~~  363 (409)
                      |.....++++|+|.....   ...+.               ...+..+..+| .+.|+++-.++.|.+|| .+.-..++.
T Consensus       172 Gm~sr~~~ifdlRqs~~~---~~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~  233 (783)
T KOG1008|consen  172 GMTSRSVHIFDLRQSLDS---VSSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQ  233 (783)
T ss_pred             ccccchhhhhhhhhhhhh---hhhhh---------------hhhcccceecCCCCCceeccccCceeeccchhhhccHHH
Confidence            999999999999853210   01111               13567788888 77899998899999999 443344554


Q ss_pred             EEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcccCC
Q 015290          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYRR  406 (409)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~dg  406 (409)
                      .+...+...+.           .++.++|+|... .|++.+.|.
T Consensus       234 ~i~~~~N~~~~-----------~l~~~aycPtrtglla~l~RdS  266 (783)
T KOG1008|consen  234 IILRNENKKPK-----------QLFALAYCPTRTGLLAVLSRDS  266 (783)
T ss_pred             HHhhCCCCccc-----------ceeeEEeccCCcchhhhhccCc
Confidence            44444433221           125899999643 455555543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.11  E-value=0.00034  Score=49.26  Aligned_cols=65  Identities=18%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             EEEEEECC---CC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           35 VSAIEFDK---TG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        35 v~~v~~~~---~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |++|++..   || ..|++|+.|..|++|+-+.                             .+.++..+          
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~----------   42 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET----------   42 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence            56666655   33 5789999999999998542                             34444444          


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~  144 (409)
                         +.|+++.-.   .+..|+.+..+|+|-+|+-
T Consensus        43 ---~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   43 ---DKVTSLCSL---GGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             ---cceEEEEEc---CCCEEEEEecCCEEEEEeC
Confidence               478888873   3468999999999999965

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.10  E-value=0.0001  Score=69.56  Aligned_cols=117  Identities=18%  Similarity=0.252  Sum_probs=77.4

Q ss_pred             cccccceeEEEeCCCCCeEEEe-c---------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          215 HAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~~~l~~~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                      .+|.+.|..+..  .|+.|+++ .         |.-|++||+++. ..+..       +.-+.++ .-+.|.|.-+..++
T Consensus       214 ~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P-------I~~~~~P-~flrf~Psl~t~~~  282 (1118)
T KOG1275|consen  214 DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP-------IQFPYGP-QFLRFHPSLTTRLA  282 (1118)
T ss_pred             eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh-hccCC-------cccccCc-hhhhhcccccceEE
Confidence            688888876665  47778774 2         445899999933 33322       1222222 56788888767899


Q ss_pred             EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEc
Q 015290          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI  355 (409)
Q Consensus       285 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~  355 (409)
                      .++..|...+-|..+-.........+..             -...+.++++|++|+.||.|.. |.|.+|--
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p-------------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNP-------------NGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEcc-------------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            9999999999884332111000111111             1345999999999999999975 99999974

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.09  E-value=6.9e-05  Score=70.70  Aligned_cols=150  Identities=14%  Similarity=0.158  Sum_probs=101.1

Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      |+-|..  +++++.+|...|+|.+-|..+.+                           .+.++..|+            +
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~---------------------------~iht~~aHs------------~  218 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFE---------------------------TIHTFDAHS------------G  218 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCc---------------------------eeeeeeccc------------c
Confidence            555554  47899999999999999988665                           578899999            8


Q ss_pred             ceEEEEEEecCCCCEEEEEeC---------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          115 KINRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                      .|.++..    .|+.|++|+.         |..|+|||++..+.                                    
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra------------------------------------  258 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA------------------------------------  258 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhc------------------------------------
Confidence            8888775    6789999875         34456666654332                                    


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCce-eeeeecCCCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSN  262 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~~~~~  262 (409)
                                           -.+++..    -+ ..-+.|+|. ...++++ ..|...+-|......+ ..+.-     
T Consensus       259 ---------------------l~PI~~~----~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~-----  307 (1118)
T KOG1275|consen  259 ---------------------LSPIQFP----YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM-----  307 (1118)
T ss_pred             ---------------------cCCcccc----cC-chhhhhcccccceEEEEecccceeeccccccCCCccceeE-----
Confidence                                 2222211    11 133567776 3456666 8899988883311111 11110     


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .......+..+++++++ +.++.|..+|.|.+|--
T Consensus       308 v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  308 VNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence            12234558999999999 99999999999999973

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.09  E-value=0.00049  Score=67.30  Aligned_cols=192  Identities=14%  Similarity=0.196  Sum_probs=102.9

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceee---eeeecCCCccc----
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY---KTEFQSHEPEF----  104 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~----  104 (409)
                      .+.|.+++||||++.++..+.++++.+-...=.-.      ..+.+ .....--+.+++.-.   -+.|+|...+-    
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i------~E~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~  181 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPI------AEKPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQ  181 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccch------hcccc-ccccccccccceecccccceeeecchhhhcccc
Confidence            57899999999999999998888777654321000      00000 000000000010000   01122211000    


Q ss_pred             -----cccccceeccceEEEEEEecCCCCEEEEE----eCC-CeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290          105 -----DYLKSLEIEEKINRVRWCAAPNGSMFILS----TND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus       105 -----~~~~~~~~~~~v~~l~~~~s~~~~~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                           ..+...+....=++|.|  .-||+++++.    ..+ +.|++||-+ +.+.....             +..+.--
T Consensus       182 ~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-------------~~~~l~~  245 (1265)
T KOG1920|consen  182 KIEKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE-------------PVEGLQH  245 (1265)
T ss_pred             cccccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC-------------ccccccc
Confidence                 00111112234457999  6899999883    233 899999976 43322211             1122222


Q ss_pred             eccCCCCCceeecccc-cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE---e-cCCeEEEEEcc
Q 015290          175 NEHNPPSFAHGYHLEW-TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS---A-DDLRINLWNLE  247 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~---~-~d~~i~lwd~~  247 (409)
                      ...|-|.+..+++... ..++.|.++.-+.-..+.-...+ ......+..++|+.++..|++   . ....|++|-+.
T Consensus       246 ~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  246 SLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence            3344555555555443 44557888887664444333222 233344899999999999987   4 55669999887

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.09  E-value=0.0052  Score=55.94  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=31.8

Q ss_pred             cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecc
Q 015290          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      +++..++.||+|++||.-.+ |.+.+...+. .+.+..+...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~  257 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD  257 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence            57999999999999998876 9999988765 5556565544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.09  E-value=1.4e-05  Score=71.87  Aligned_cols=80  Identities=18%  Similarity=0.339  Sum_probs=64.3

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      +..+.....|.+++++|+.+.|+.|+.||.|.+||...+..                             .+....    
T Consensus       253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----------------------------~~~ka~----  299 (545)
T PF11768_consen  253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----------------------------LLAKAE----  299 (545)
T ss_pred             EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----------------------------eeeeec----
Confidence            44445778999999999999999999999999999876532                             122222    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  148 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  148 (409)
                              -.++.++|  +|+|..+++|+..|.+.+||+.-..
T Consensus       300 --------~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  300 --------FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             --------ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence                    35788999  5899999999999999999987543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.00021  Score=66.66  Aligned_cols=113  Identities=18%  Similarity=0.200  Sum_probs=79.3

Q ss_pred             CCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC----CCCEEEEEeCCCeEEEEeCCCcc
Q 015290          227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSSSRGFVRLVDMRQSA  301 (409)
Q Consensus       227 ~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~s~dg~i~iwd~~~~~  301 (409)
                      .-+|++++++ .||+|.|-.+. +.+....++        ...++.+++++|+    ..+.+++|+.-| +.++.-+--.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~-~~~~~~~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLF-TDDEITQYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             ccCCceEEEecCCCcEEEeecc-CCccceeEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            5679999999 99999999888 444444332        2357899999998    226899999888 7777532110


Q ss_pred             ccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEec
Q 015290          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~  367 (409)
                         ..... .           +....++|.++.|.  |.++|-++|-.|++||..+ ++.+..++.
T Consensus       150 ---nk~~v-~-----------l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~  197 (846)
T KOG2066|consen  150 ---NKDSV-V-----------LSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPP  197 (846)
T ss_pred             ---Cccce-e-----------eecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCC
Confidence               00011 1           12225799999998  7799999998899999986 666655553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.02  E-value=0.0095  Score=53.34  Aligned_cols=248  Identities=13%  Similarity=0.193  Sum_probs=119.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccc-ccc-cc-cc--ccCceeccCCCCCceeecc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-SEN-TL-LA--EKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~-~~-~~--~~~~~~~~~~~~~~~~~~~  188 (409)
                      ..+....|  +|+|+.++... ++.|.+++..++...++.... ...+. .+. +. ..  -+......+++++..++..
T Consensus        43 ~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   43 PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            57888999  79999988876 467999998777555443322 11111 111 00 00  1112233345555444433


Q ss_pred             cccc--------------------------------cc--eeEEEecCCcccceeeee-eccccccceeEEEeCCCCCeE
Q 015290          189 EWTE--------------------------------NM--ATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETF  233 (409)
Q Consensus       189 ~~~~--------------------------------~~--~i~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l  233 (409)
                      .+..                                +-  .+.++++.+......... -.......+..+.|.++++.+
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            2210                                01  345566654332211100 002335567889999998844


Q ss_pred             EEe---c---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe-CCCCCEEEEEeCCCeEEE--EeCCCccccc
Q 015290          234 VSA---D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRL--VDMRQSALCD  304 (409)
Q Consensus       234 ~~~---~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~s~dg~i~i--wd~~~~~~~~  304 (409)
                      +..   .   ...+.+.|.. .+.........   ..+--..-....|. +++..++.....+|.-+|  ++...+..  
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~-tg~~~~~~~e~---~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~--  272 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDAS-TGETRVVLEET---SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP--  272 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEEC-TTTCEEEEEEE---SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE--
T ss_pred             EEEEcccCCCEEEEEEEECC-CCceeEEEEec---CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce--
Confidence            432   1   2245666776 33332222111   11111222345554 666455556667775444  45555432  


Q ss_pred             cccccccccccccCCccccccccccee-eeEeccCCCEEE-Eee--c-CeEEEEEccCC-CcceEEEecccCcccccccc
Q 015290          305 HSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLL-SRD--Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDL  378 (409)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~-sg~--~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~  378 (409)
                         +.+..             ..-.|. -+.++++++.|. ++.  + ..-.||-+... +..+..+.......      
T Consensus       273 ---~~lT~-------------G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~------  330 (353)
T PF00930_consen  273 ---RQLTS-------------GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH------  330 (353)
T ss_dssp             ---EESS--------------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT------
T ss_pred             ---ecccc-------------CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc------
Confidence               22211             023453 477888887654 443  2 45555555443 44455554333321      


Q ss_pred             cCCCCccceeeEEEcCCCCeEEEc
Q 015290          379 YNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       379 ~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                               ..+.|||||++++-.
T Consensus       331 ---------~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  331 ---------YSASFSPDGKYYVDT  345 (353)
T ss_dssp             ---------EEEEE-TTSSEEEEE
T ss_pred             ---------eEEEECCCCCEEEEE
Confidence                     279999999988743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.0001  Score=66.64  Aligned_cols=144  Identities=18%  Similarity=0.188  Sum_probs=89.3

Q ss_pred             cccceeEEEeCCCCCeEEEe--c--C-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290          217 HDFNINSISNNSDCETFVSA--D--D-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~--~--d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  291 (409)
                      ....+..-+|+|+++.++..  .  . ..+.++++. .+.......     +.++   -...+|+|||.+++++...||.
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~~~i~~-----~~g~---~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKRPVILN-----FNGN---NGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEecc-CCccceeec-----cCCc---cCCccCCCCCCEEEEEECCCCC
Confidence            34456667899999877653  2  2 358999998 444333321     2333   3467899999555666667775


Q ss_pred             --EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--Ce--EEEEEccCCCcceEEE
Q 015290          292 --VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN--LKLWDIRMDSTPVATF  365 (409)
Q Consensus       292 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~--v~iwd~~~~~~~~~~~  365 (409)
                        |.++|+.++..    .+ +.. .            .+.-..-.|+|||++|+-.+|  |.  |.++|..  +.....+
T Consensus       262 ~~iy~~dl~~~~~----~~-Lt~-~------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~~ri  321 (425)
T COG0823         262 PDIYLMDLDGKNL----PR-LTN-G------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQVTRL  321 (425)
T ss_pred             ccEEEEcCCCCcc----ee-ccc-C------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCC--CCceeEe
Confidence              55567766542    12 221 0            122336789999999997765  54  5555654  5554555


Q ss_pred             ecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      ......-               ..-.|||||++|+..+.
T Consensus       322 T~~~~~~---------------~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         322 TFSGGGN---------------SNPVWSPDGDKIVFESS  345 (425)
T ss_pred             eccCCCC---------------cCccCCCCCCEEEEEec
Confidence            5444332               26789999999987764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.0078  Score=54.14  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhh-------hcccc-----cccC-----CCceeeeee
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE-------KQMDF-----TSTS-----HPEYRYKTE   96 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~-----~~~~~~~~~   96 (409)
                      .|++|.|.++..-||+|...|.|.||.....+... .......+.       +....     +.++     ...+.+...
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58999999998889999999999999987654311 000001111       11000     0111     112344444


Q ss_pred             ecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee
Q 015290           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  152 (409)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  152 (409)
                      +....            ++|++++.  | |=.+++.|..+|.+.|.|++.......
T Consensus        82 ~~~~~------------g~vtal~~--S-~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   82 LDAKQ------------GPVTALKN--S-DIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             E---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeccC------------CcEeEEec--C-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence            44444            89999998  4 444999999999999999988766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.00079  Score=61.06  Aligned_cols=113  Identities=19%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             EEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CCe--EEEE
Q 015290          223 SISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGF--VRLV  295 (409)
Q Consensus       223 ~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~--i~iw  295 (409)
                      .=.|+|||+.++..  ..|.  |.+++.+  +.....+       ......-..-.|+|+| ++++..+. +|.  |.+.
T Consensus       286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~~ri-------T~~~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~  355 (425)
T COG0823         286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQVTRL-------TFSGGGNSNPVWSPDG-DKIVFESSSGGQWDIDKN  355 (425)
T ss_pred             CccCCCCCCEEEEEeCCCCCcceEEECCC--CCceeEe-------eccCCCCcCccCCCCC-CEEEEEeccCCceeeEEe
Confidence            44799999999875  5555  4445555  3322321       1122222277899999 77776654 344  5555


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcceE
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVA  363 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~~  363 (409)
                      |+.++..    .+.+..              ........|.|+|+.+...+.  +.=.++.+...++...
T Consensus       356 ~~~~~~~----~~~lt~--------------~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         356 DLASGGK----IRILTS--------------TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             ccCCCCc----EEEccc--------------cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence            6555431    123322              234456788889988775432  3334444433344443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0013  Score=62.20  Aligned_cols=135  Identities=12%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             eeEEEeCCCCCeEEE-e-cCC----eEEEEEccCC-----CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC
Q 015290          221 INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  289 (409)
Q Consensus       221 v~~l~~~~~~~~l~~-~-~d~----~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d  289 (409)
                      |..+....+..+|++ | +++    .+++|+++..     ..++....+-+...+....++.+++.+.+- +.+|.|-.+
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~n  146 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTN  146 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecC
Confidence            333433333456665 4 444    6899999743     123322222222234446778999999987 999999999


Q ss_pred             CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE-EEEeecCeEEEEEccCCCcc--eEEEe
Q 015290          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTP--VATFK  366 (409)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~sg~~~~v~iwd~~~~~~~--~~~~~  366 (409)
                      |.|..+.-.--+..  ..+.--.           ..-..+|+.+++..+++. +.+++-..|.+|.+.  ++.  ...+.
T Consensus       147 G~V~~~~GDi~RDr--gsr~~~~-----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~--gr~p~~~~ld  211 (933)
T KOG2114|consen  147 GLVICYKGDILRDR--GSRQDYS-----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS--GRTPSLKVLD  211 (933)
T ss_pred             cEEEEEcCcchhcc--ccceeee-----------ccCCCCceeeEEecCCceeEEEEecceeEEEEec--CCCcceeeec
Confidence            99988852211100  0011100           011468999999999987 445555899999997  343  33354


Q ss_pred             cccCc
Q 015290          367 IHEHL  371 (409)
Q Consensus       367 ~~~~~  371 (409)
                      .|+..
T Consensus       212 ~~G~~  216 (933)
T KOG2114|consen  212 NNGIS  216 (933)
T ss_pred             cCCcc
Confidence            44443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.93  E-value=0.012  Score=51.62  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=67.0

Q ss_pred             cccceeEEEeCCCCCeEEE-e----cCCe-EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEE-Ee--
Q 015290          217 HDFNINSISNNSDCETFVS-A----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SS--  287 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~-~----~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s--  287 (409)
                      ....+..+.|+|....+++ +    .+.. -+||-++..+.....+..     ......+..=-|.|+| ..+.. +.  
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-----~~~~e~~gHEfw~~DG-~~i~y~~~~~  259 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-----RMEGESVGHEFWVPDG-STIWYDSYTP  259 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-----CCCCcccccccccCCC-CEEEEEeecC
Confidence            4455678899997655443 3    3332 366766655554444211     1112445566789999 54443 22  


Q ss_pred             --CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE-eec--C--------------
Q 015290          288 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M--------------  348 (409)
Q Consensus       288 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s-g~~--~--------------  348 (409)
                        .+..|.-+|..+++..    .....               .+...+--++||++++. |+|  .              
T Consensus       260 ~~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p  320 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP  320 (386)
T ss_dssp             TT--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred             CCCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence              2445677777775421    11111               13345566788888764 333  1              


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      -|+++++.. ++ ...+..|...-..+........    -...|+|||++++..|
T Consensus       321 ~i~~~~~~~-~~-~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~S  369 (386)
T PF14583_consen  321 WIYLFDVEA-GR-FRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRS  369 (386)
T ss_dssp             EEEEEETTT-TE-EEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE
T ss_pred             EEEEecccc-Cc-eeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEEC
Confidence            456677763 33 2333334321100000000001    2689999999877554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.91  E-value=0.0094  Score=49.73  Aligned_cols=165  Identities=12%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee-----eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      +..-.+++..++.++++. .++.+.++++......+     ..+.+..  ...+...+-.++|+|.+ +.|+.+-...-.
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~--~~~~N~G~EGla~D~~~-~~L~v~kE~~P~  141 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGF--PNKGNKGFEGLAYDPKT-NRLFVAKERKPK  141 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE-----S---SS--EEEEEETTT-TEEEEEEESSSE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccc--ccCCCcceEEEEEcCCC-CEEEEEeCCCCh
Confidence            345678888888777777 79999999985322221     1121111  12355678999999998 666666665556


Q ss_pred             EEEeCCC--ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEEecc
Q 015290          293 RLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       293 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      .+|.++.  ............. ..       .......+.+++++|....|..-+ . ..|..+|..  |+++..+.-.
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~  211 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDL-DD-------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLD  211 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHH-H--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-S
T ss_pred             hhEEEccccCccceeecccccc-cc-------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeC
Confidence            6666543  1100000000000 00       011124578899999765444444 3 899999954  8877766543


Q ss_pred             cCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      .+.....      ..+-..-.++|.++|++.++.
T Consensus       212 ~g~~gl~------~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  212 RGFHGLS------KDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             TTGGG-S------S---SEEEEEE-TT--EEEEE
T ss_pred             CcccCcc------cccCCccEEEECCCCCEEEEc
Confidence            3210000      000111389999999765543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.89  E-value=0.0084  Score=53.82  Aligned_cols=48  Identities=15%  Similarity=0.072  Sum_probs=38.9

Q ss_pred             ccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCc
Q 015290          323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       323 ~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      +.+....+.+++.+|++++.|+.+. |.|.|+|+.. +..+..++|..+.
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA  351 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA  351 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence            4455667899999999988888765 9999999986 7888888876664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.84  E-value=0.014  Score=53.18  Aligned_cols=107  Identities=11%  Similarity=-0.031  Sum_probs=61.5

Q ss_pred             CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccc
Q 015290          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (409)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  308 (409)
                      +..++.+ .+|.+..+|.. +++.+....     +.    ....+..  .+ ..++.++.+|.+..+|..+++.      
T Consensus       256 ~~~vy~~~~~g~l~ald~~-tG~~~W~~~-----~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~------  316 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLR-SGQIVWKRE-----YG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVE------  316 (394)
T ss_pred             CCEEEEEEcCCeEEEEECC-CCCEEEeec-----CC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcE------
Confidence            4455555 88999999998 555443311     11    1112222  24 5677778899999999988864      


Q ss_pred             cccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecc
Q 015290          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      .|......          .....+....  +.+|+.++ +|.|.+.|..+ ++.+...+..
T Consensus       317 ~W~~~~~~----------~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~  364 (394)
T PRK11138        317 LWSQSDLL----------HRLLTAPVLY--NGYLVVGDSEGYLHWINRED-GRFVAQQKVD  364 (394)
T ss_pred             EEcccccC----------CCcccCCEEE--CCEEEEEeCCCEEEEEECCC-CCEEEEEEcC
Confidence            23220000          0011112221  34556665 59999999986 8877766543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.82  E-value=0.00087  Score=64.55  Aligned_cols=104  Identities=18%  Similarity=0.105  Sum_probs=72.3

Q ss_pred             CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccc
Q 015290          231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (409)
Q Consensus       231 ~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  309 (409)
                      ...+.| .+..+..||.+..+..+-.-..+   .-.......|++-+.+|  +||.|+.+|.||+||- .++..      
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k---~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A------  610 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSK---QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA------  610 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeecccc---ccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh------
Confidence            356677 99999999999654322110011   11234557888888887  8999999999999994 22211      


Q ss_pred             ccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                                .+.+.+-..+|..+..+.||+||++.++..|.|++..
T Consensus       611 ----------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  611 ----------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ----------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence                      1112333579999999999999999888888888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.81  E-value=0.0021  Score=59.85  Aligned_cols=103  Identities=8%  Similarity=0.060  Sum_probs=64.0

Q ss_pred             cceeEEEecCCccc--ceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceee-eeecCC---CcCc
Q 015290          193 NMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN-IVDMKP---SNMD  264 (409)
Q Consensus       193 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~-~~~~~~---~~~~  264 (409)
                      ++.|.+.|..+...  ...+..+  .-......++++|||++++++  .+.++.+.|+......+. .++.+.   .+..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            45677888765110  1122221  234556789999999999876  799999999984332110 000000   0011


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                       -.......+|+++| +.+.+...|..|..||+..
T Consensus       373 -vGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 -LGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -cCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence             12234577899998 8888888999999999876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.0069  Score=54.23  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~   65 (409)
                      ...+....|||+|+++|... ++.|.+++..++.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence            35788999999999999885 6789999887664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.75  E-value=0.0025  Score=58.07  Aligned_cols=137  Identities=12%  Similarity=0.017  Sum_probs=78.9

Q ss_pred             ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      .....+..+.++|+|++++.+.||.-.|+... .....            ..+.-..+.|.+.+  .+|+-...+.|.++
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNK------------AFGSGLSFVWSSRN--RYAVLESSSTIKIY   94 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEE------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred             CCCcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccc------------ccCceeEEEEecCc--cEEEEECCCeEEEE
Confidence            34445789999999999999988888888844 22111            11334578899854  56766668889997


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccccc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  375 (409)
                      .--..+.    .+.+..              ...+..+-.   |.+|+..+++.|.+||+.+ ++.+..+....  +   
T Consensus        95 kn~~~~~----~k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v---  147 (443)
T PF04053_consen   95 KNFKNEV----VKSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V---  147 (443)
T ss_dssp             ETTEE-T----T-------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E------
T ss_pred             EcCcccc----ceEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C---
Confidence            3222111    112222              112222222   8888888778999999986 88888887543  2   


Q ss_pred             ccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       376 ~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                                  ..+.|+++|.++|-.+.+.
T Consensus       148 ------------k~V~Ws~~g~~val~t~~~  166 (443)
T PF04053_consen  148 ------------KYVIWSDDGELVALVTKDS  166 (443)
T ss_dssp             ------------EEEEE-TTSSEEEEE-S-S
T ss_pred             ------------cEEEEECCCCEEEEEeCCe
Confidence                        4899999999999887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.71  E-value=0.0087  Score=55.90  Aligned_cols=65  Identities=14%  Similarity=0.154  Sum_probs=44.3

Q ss_pred             cceeeeEeccCCCEEEEeec--CeEEEEEccCCCc-----------ceEEEecccCcccccccccCCCCccceeeEEEcC
Q 015290          328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  394 (409)
                      .....+.++|||+++++++.  .+|.|.|+.+...           .+.......++                ...+|++
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg  384 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG  384 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence            45788999999999998763  9999999975221           12333332232                4789999


Q ss_pred             CCCeEEEcccCCCC
Q 015290          395 DGLHFATGSYRRDN  408 (409)
Q Consensus       395 dg~~l~s~s~dg~i  408 (409)
                      +|....|.--|..|
T Consensus       385 ~G~aytslf~dsqv  398 (635)
T PRK02888        385 RGNAYTTLFLDSQI  398 (635)
T ss_pred             CCCEEEeEeeccee
Confidence            98876666555543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.70  E-value=0.014  Score=51.57  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=69.3

Q ss_pred             ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      ...++|++++--  +..|+.+.++.|.+|++.........-      .......+.++...  + ++++.|.....+.++
T Consensus        86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL  154 (321)
T ss_dssp             EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred             eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence            346778888766  445777777899999999333133321      11122356666655  4 688888887778877


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      ..+.....   ...+..   +.        ...+++++.|-++++.++.++. |.+.++...
T Consensus       155 ~~~~~~~~---l~~va~---d~--------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEENNK---LILVAR---DY--------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTTE----EEEEEE---ES--------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccCCE---EEEEEe---cC--------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            54431100   122221   00        1246888899877777777775 999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.69  E-value=0.014  Score=53.37  Aligned_cols=58  Identities=9%  Similarity=0.093  Sum_probs=37.3

Q ss_pred             CCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       230 ~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      |..|+...++.|.+||+. ++..++.++         -..|..+.|+++| .+++..+.+ .+.+++...
T Consensus       117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWE-TGKLIRRID---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             SSSEEEEETTEEEEE-TT-T--EEEEES---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-H
T ss_pred             CcEEEEECCCCEEEEEhh-HcceeeEEe---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecc
Confidence            777776666689999999 777777642         1248899999999 888888765 577777544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00042  Score=63.82  Aligned_cols=122  Identities=11%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      +...|.--+++..+++++.| .-|.+++|+-. .+.....      +..+..+.+.....+++. .++|.|+..|.|.++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKL------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVF  103 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcc------cccCccceEEEEEecchh-HhhhhhcCCceEEee
Confidence            44445555567789999999 99999999987 4444332      133345667777888887 899999999999999


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccC
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  357 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~  357 (409)
                      -+....... ....-..          -..|...|++++|++++..+.+|++ |.|.+-.++.
T Consensus       104 ql~~~~p~~-~~~~t~~----------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  104 QLNKELPRD-LDYVTPC----------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhccCCCc-ceeeccc----------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            887633211 1111111          1126779999999999999999987 9998877764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.0049  Score=50.91  Aligned_cols=86  Identities=10%  Similarity=0.024  Sum_probs=52.4

Q ss_pred             cccceeEEEeCCCCCeEEEe-cCCe----EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290          217 HDFNINSISNNSDCETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d~~----i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  291 (409)
                      +.-.|..++..+||..++.+ ..|.    --+--....++.+..++++++.......+|-+++.+.+..-..++.-..+.
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence            44567788888888766654 3221    111112224555666555544444455678888888665244555556677


Q ss_pred             EEEEeCCCccc
Q 015290          292 VRLVDMRQSAL  302 (409)
Q Consensus       292 i~iwd~~~~~~  302 (409)
                      ..+||..++..
T Consensus       304 ~vi~da~tG~v  314 (366)
T COG3490         304 AVIWDAATGAV  314 (366)
T ss_pred             EEEEEcCCCcE
Confidence            88999999874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.0016  Score=61.44  Aligned_cols=72  Identities=18%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      -.+++++|+|..-.||.|-.-|.+.+|...+.+.                           .+....|.           
T Consensus        60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---------------------------htv~~th~-----------  101 (1416)
T KOG3617|consen   60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---------------------------HTVVETHP-----------  101 (1416)
T ss_pred             eehhhhccChHHHHHhhccccceeEEEecCCcee---------------------------eeeccCCC-----------
Confidence            3467899999988899999999999999887652                           23345566           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~  145 (409)
                       .+|..+.|  |++|..++++..-|.+.+|...
T Consensus       102 -a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  102 -APIQGLDW--SHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -CCceeEEe--cCCCCeEEEcCCCceeEEEEee
Confidence             89999999  8999999999999999999876

>smart00320 WD40 WD40 repeats

Probab=97.49  E-value=0.00025  Score=39.58  Aligned_cols=30  Identities=27%  Similarity=0.586  Sum_probs=28.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~   60 (409)
                      |...|.++.|++++.++++++.|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            778999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.46  E-value=0.00045  Score=38.47  Aligned_cols=37  Identities=27%  Similarity=0.626  Sum_probs=31.0

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd  143 (409)
                      +...+..|.            ..|.++.|  .+++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~------------~~i~~~~~--~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHT------------GPVTSVAF--SPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecC------------CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence            345566777            79999999  57778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00092  Score=60.91  Aligned_cols=74  Identities=23%  Similarity=0.221  Sum_probs=60.0

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE-EEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ..+.-+.|+|.-..+|.+ .+|.+.+..+.  -+.+.+       ++-+...++ +++|.||| +.||.|-.||+|++.|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwt-------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWT-------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec--cceeEe-------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence            456778999999999999 99999999887  333444       333444455 99999999 9999999999999999


Q ss_pred             CCCccc
Q 015290          297 MRQSAL  302 (409)
Q Consensus       297 ~~~~~~  302 (409)
                      ..++..
T Consensus        91 ve~~~~   96 (665)
T KOG4640|consen   91 VEKGGR   96 (665)
T ss_pred             ccCCCc
Confidence            998754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.42  E-value=0.052  Score=49.53  Aligned_cols=30  Identities=10%  Similarity=0.174  Sum_probs=23.9

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEM  155 (409)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  155 (409)
                      ++..++.++.++.+..+|..+++.......
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            345777888899999999999988776553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0013  Score=59.88  Aligned_cols=80  Identities=18%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...|.-+.|+|.-.++|++..+|.|.+..+.-.+                            +.++.-|.          
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR----------------------------lwtip~p~----------   61 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR----------------------------LWTIPIPG----------   61 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccce----------------------------eEeccCCC----------
Confidence            4578899999999999999999999888876332                            33444344          


Q ss_pred             eccceE-EEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeee
Q 015290          112 IEEKIN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK  153 (409)
Q Consensus       112 ~~~~v~-~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  153 (409)
                        ..++ +++|  .|||+.|+.|-.||+|++.|+..+......
T Consensus        62 --~~v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   62 --ENVTASLCW--RPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             --Cccceeeee--cCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence              4555 9999  799999999999999999999988765543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.33  E-value=0.059  Score=52.45  Aligned_cols=71  Identities=11%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      ......|++-+.+| ++|+| .+|.|++||-- ... .++      .+++...+|..|..+.|| +++++.+ +..|.++
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~-AKT------~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi  644 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR-AKT------ALPGLGDPIIGIDVTADG-KWILATC-KTYLLLI  644 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chh-hhh------cCCCCCCCeeEEEecCCC-cEEEEee-cceEEEE
Confidence            34456788888877 67777 99999999954 322 222      267888999999999999 7776554 5567788


Q ss_pred             eCC
Q 015290          296 DMR  298 (409)
Q Consensus       296 d~~  298 (409)
                      +..
T Consensus       645 ~t~  647 (794)
T PF08553_consen  645 DTL  647 (794)
T ss_pred             EEe
Confidence            753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.32  E-value=0.094  Score=45.51  Aligned_cols=129  Identities=11%  Similarity=0.098  Sum_probs=74.7

Q ss_pred             eeEEEeCCCCCeEEEe-c---------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CC
Q 015290          221 INSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR  289 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~d  289 (409)
                      .+.+...|+|.+.++. .         ...-.+|.+.-.+...+.       ...+-..-+.++||||+ +.|+.+. ..
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT~~  184 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADTPA  184 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeCCC
Confidence            4556677777666554 3         011134444422333333       34444556789999999 6666554 45


Q ss_pred             CeEEEEeCCC--ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290          290 GFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       290 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~  365 (409)
                      +.|.-|++..  +..... ....           .+....+..-.++...+|.+-+++. . +.|.+|+.+  ++++..+
T Consensus       185 ~~i~r~~~d~~~g~~~~~-~~~~-----------~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~i  250 (307)
T COG3386         185 NRIHRYDLDPATGPIGGR-RGFV-----------DFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGEI  250 (307)
T ss_pred             CeEEEEecCcccCccCCc-ceEE-----------EccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEEE
Confidence            7888887763  111100 0000           0111234566778888898876553 3 499999986  8899888


Q ss_pred             ecccCc
Q 015290          366 KIHEHL  371 (409)
Q Consensus       366 ~~~~~~  371 (409)
                      ......
T Consensus       251 ~lP~~~  256 (307)
T COG3386         251 KLPVKR  256 (307)
T ss_pred             ECCCCC
Confidence            877544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.30  E-value=0.0013  Score=38.68  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccC
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG   63 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~   63 (409)
                      -...|.+++|+|...+||.|..+|.|.||.+..
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            356799999999999999999999999999843

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.22  E-value=0.097  Score=43.83  Aligned_cols=141  Identities=11%  Similarity=-0.006  Sum_probs=72.4

Q ss_pred             CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeecc
Q 015290          136 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH  215 (409)
Q Consensus       136 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  215 (409)
                      +++|..||..+++..........  .         ...... .......++.+  ..++.+..+|..+..   .+..+ .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~--~---------~~~~~~-~~~~~~~v~~~--~~~~~l~~~d~~tG~---~~W~~-~   63 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG--I---------GGPVAT-AVPDGGRVYVA--SGDGNLYALDAKTGK---VLWRF-D   63 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS--C---------SSEEET-EEEETTEEEEE--ETTSEEEEEETTTSE---EEEEE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCCC--C---------CCccce-EEEeCCEEEEE--cCCCEEEEEECCCCC---EEEEe-e
Confidence            68899999988888777654210  0         000000 00011111221  136788888876633   22222 1


Q ss_pred             ccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee-ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      . ...+..... ..+..++.+ .++.+..+|.. +++.+... ....   .... ..........+ ..++.+..++.|.
T Consensus        64 ~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~---~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~  135 (238)
T PF13360_consen   64 L-PGPISGAPV-VDGGRVYVGTSDGSLYALDAK-TGKVLWSIYLTSS---PPAG-VRSSSSPAVDG-DRLYVGTSSGKLV  135 (238)
T ss_dssp             C-SSCGGSGEE-EETTEEEEEETTSEEEEEETT-TSCEEEEEEE-SS---CTCS-TB--SEEEEET-TEEEEEETCSEEE
T ss_pred             c-cccccceee-ecccccccccceeeeEecccC-Ccceeeeeccccc---cccc-cccccCceEec-CEEEEEeccCcEE
Confidence            1 111111111 134455655 78899999987 66665542 1110   1111 11222222225 7788888899999


Q ss_pred             EEeCCCccc
Q 015290          294 LVDMRQSAL  302 (409)
Q Consensus       294 iwd~~~~~~  302 (409)
                      .+|.++|+.
T Consensus       136 ~~d~~tG~~  144 (238)
T PF13360_consen  136 ALDPKTGKL  144 (238)
T ss_dssp             EEETTTTEE
T ss_pred             EEecCCCcE
Confidence            999999875

...

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.15  Score=46.14  Aligned_cols=143  Identities=11%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             ceeEEEeCCCCCeEEEe-c---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          220 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      ....++++|+++.+..+ .   ++++.+.|.. +........      .+. .+ ..++++|+|...+++-..++.|.+.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~~~------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi  187 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTATIP------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVI  187 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEEEe------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence            44678999999888876 4   5788888877 455444431      111 22 7899999993355555578999999


Q ss_pred             eCCCccccc-cccccccccccccCCcccccccccceeeeEeccCCCEEEEeec----CeEEEEEccCCCcceEE-Eeccc
Q 015290          296 DMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIHE  369 (409)
Q Consensus       296 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~----~~v~iwd~~~~~~~~~~-~~~~~  369 (409)
                      |........ ........              ......+.++|+|.++....+    +.+...|..+ +..... +....
T Consensus       188 ~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~  252 (381)
T COG3391         188 DTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGS  252 (381)
T ss_pred             eCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEecccccc
Confidence            977654310 00000111              234567899999997776543    4888888875 444333 22222


Q ss_pred             -CcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          370 -HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       370 -~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                       .+                ..+..+|+|+++.+.
T Consensus       253 ~~~----------------~~v~~~p~g~~~yv~  270 (381)
T COG3391         253 GAP----------------RGVAVDPAGKAAYVA  270 (381)
T ss_pred             CCC----------------CceeECCCCCEEEEE
Confidence             12                378899999877665

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.18  E-value=0.11  Score=45.99  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=46.8

Q ss_pred             ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290          220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~  298 (409)
                      .+.++...  +++++.| ....+.++..+.....+..+.     -......++++.|-+++ ..++.+..+|.+.++...
T Consensus       131 ~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va-----~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  131 YITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVA-----RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEE-----EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred             EEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEE-----ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence            45555554  5688888 777788776653233333321     11234568999999887 799999999999999876


Q ss_pred             C
Q 015290          299 Q  299 (409)
Q Consensus       299 ~  299 (409)
                      .
T Consensus       203 ~  203 (321)
T PF03178_consen  203 P  203 (321)
T ss_dssp             S
T ss_pred             C
Confidence            3

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.17  E-value=0.17  Score=45.67  Aligned_cols=83  Identities=16%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..++|++++.|.-| ++|.|..+|.+.|.|+.+....                         +-..+..|.      ...
T Consensus        85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI-------------------------~~~~i~~~~------~~~  132 (395)
T PF08596_consen   85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVI-------------------------YNENIRESF------LSK  132 (395)
T ss_dssp             -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEE-------------------------EEEEGGG--------T-S
T ss_pred             cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEE-------------------------eeccccccc------ccc
Confidence            36899999998555 9999999999999999766531                         111122110      000


Q ss_pred             eeccceEEEEEEe---cCCC---CEEEEEeCCCeEEEEEcC
Q 015290          111 EIEEKINRVRWCA---APNG---SMFILSTNDKTIKLWKVR  145 (409)
Q Consensus       111 ~~~~~v~~l~~~~---s~~~---~~l~s~~~d~~i~iwd~~  145 (409)
                      .....|+++.|..   ..|+   -.+++|...|.+.+|.+.
T Consensus       133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence            1115788888853   1222   357788888999999774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.16  E-value=0.044  Score=38.79  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=38.6

Q ss_pred             ccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe---CCCCCEEEEEeCCCeEE
Q 015290          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~s~s~dg~i~  293 (409)
                      ...|.++.-... ..++.+ .+|+|-+|+-.  ....+.   +      .+..+.++.+.   -+|..-|++|-.+|.|-
T Consensus        42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            345667766655 568888 99999999865  222221   1      12234555543   34445788888888763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.0023  Score=60.51  Aligned_cols=114  Identities=10%  Similarity=-0.021  Sum_probs=81.9

Q ss_pred             ccCceeccCCCCCceeecccc--cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290          170 EKNFMNEHNPPSFAHGYHLEW--TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~  246 (409)
                      .+......|+|.-.+++.+++  ...|.+.|+--..    .+.+..  .-.-.+++++|+|..-.|+.| .-|.+.+|..
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadtG----EPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTG----EPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEecCC----CCCccc--ccceehhhhccChHHHHHhhccccceeEEEec
Confidence            333444567777777777776  3456787774332    222111  112335679999998888999 9999999998


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~  298 (409)
                      . ..+ ..++      ...|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus        89 ~-~~e-~htv------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   89 N-TTE-THTV------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             C-Cce-eeee------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            8 333 3332      46699999999999999 999999999999999765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.039  Score=49.84  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             EEe-cCCeEEEEEccCCCc-eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290          234 VSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (409)
Q Consensus       234 ~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  311 (409)
                      +.| .+..|.-||.+..+. .+.....+.  +. ......|.+-..+|  +++.||.+|.|++||. .+...        
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kq--y~-~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A--------  463 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQ--YS-TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA--------  463 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccc--cc-cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh--------
Confidence            457 899999999985554 222211110  11 12345677767666  8999999999999996 32211        


Q ss_pred             ccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                              .+.+.+-..+|..+..+.||++|++.++..+.+-++.
T Consensus       464 --------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  464 --------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             --------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence                    1112333568999999999999998888777777754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.79  E-value=0.41  Score=43.78  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=24.1

Q ss_pred             cceeEEEeCCCCCeEEEecCCeEEEEEcc
Q 015290          219 FNINSISNNSDCETFVSADDLRINLWNLE  247 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~~d~~i~lwd~~  247 (409)
                      +.+.++.|+.+.+.++...||.+++||+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            78899999987655555599999999997

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.70  E-value=0.26  Score=45.53  Aligned_cols=70  Identities=11%  Similarity=-0.040  Sum_probs=43.2

Q ss_pred             EEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       223 ~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      .+.|||....|+.= ....-.+++++.....++. +     + ...+.|.|.+|.+||.+++++.+..=.-++||-..
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            46799998877764 3333346677644433332 1     2 34578999999999944444444444567888554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.67  E-value=0.32  Score=40.96  Aligned_cols=208  Identities=12%  Similarity=0.134  Sum_probs=118.0

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|.++.|  +|+.+.|++......-.+|=-.+|+........                                     
T Consensus        86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~-------------------------------------  126 (316)
T COG3204          86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-------------------------------------  126 (316)
T ss_pred             ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccc-------------------------------------
Confidence            56999999  788888888877776666655666665553321                                     


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeee--cCCCcCcCccCce
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDDLTEVI  270 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~v  270 (409)
                                            + -...-.+++..++++.++- .++.+.++.+......+....  ++...........
T Consensus       127 ----------------------g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf  183 (316)
T COG3204         127 ----------------------G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF  183 (316)
T ss_pred             ----------------------c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence                                  1 1122457777778777777 889998888774333322211  1111222225667


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-C
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M  348 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~  348 (409)
                      ..++|+|.. ..|..+-...-+.||.+....      ..+..|. .........-.-..+.++.|++....|.+-+ + +
T Consensus       184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~-~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr  255 (316)
T COG3204         184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHA-SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR  255 (316)
T ss_pred             eeeecCCCC-ceEEEEEccCCcEEEEEecCC------ccccccc-ccCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence            899999998 777777666667777665322      1111110 0000000000124678889987655555444 3 7


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  399 (409)
                      .+.-.|..  +.++..+.-+.+......+      +-..-.++..++|..-
T Consensus       256 ~l~Evd~~--G~~~~~lsL~~g~~gL~~d------ipqaEGiamDd~g~lY  298 (316)
T COG3204         256 RLLEVDLS--GEVIELLSLTKGNHGLSSD------IPQAEGIAMDDDGNLY  298 (316)
T ss_pred             eEEEEecC--CCeeeeEEeccCCCCCccc------CCCcceeEECCCCCEE
Confidence            77777765  6666665544433211111      1111367888877643

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.67  E-value=0.46  Score=45.54  Aligned_cols=75  Identities=13%  Similarity=0.078  Sum_probs=43.4

Q ss_pred             ccceeEEEeCCCCCeEEEecCCeEEEEEccC--CCceeeeeecCCCcC-cCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290          218 DFNINSISNNSDCETFVSADDLRINLWNLEI--SDQCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~--~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i  294 (409)
                      ...|..+.|+|||..++...++.|.+=-+..  .+. ...-  .+..+ ......+.++.|.+++ .++ .+..++.-.+
T Consensus       447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~--~~~~l~~~l~~~~~~l~W~~~~-~L~-V~~~~~~~~v  521 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALT--NPREVGPGLGDTAVSLDWRTGD-SLV-VGRSDPEHPV  521 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeec--ccEEeecccCCccccceEecCC-EEE-EEecCCCCce
Confidence            4569999999999999887457777632221  232 2210  00111 2233446889999998 654 5554444445


Q ss_pred             EeC
Q 015290          295 VDM  297 (409)
Q Consensus       295 wd~  297 (409)
                      |.+
T Consensus       522 ~~v  524 (591)
T PRK13616        522 WYV  524 (591)
T ss_pred             EEE
Confidence            543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.5  Score=42.82  Aligned_cols=206  Identities=10%  Similarity=0.065  Sum_probs=124.7

Q ss_pred             EEEEECCCCCE-EEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           36 SAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        36 ~~v~~~~~~~~-la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      ..+++++++.. .++...++.|.+.|..+....                          .....+              .
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------------------~~~~vG--------------~  116 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------------------GSIPVG--------------L  116 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------------------eEeeec--------------c
Confidence            46678887774 444445688999996655420                          001111              2


Q ss_pred             ceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      ....+++  +++++.+..+..   ++++.+.|..++.......                                     
T Consensus       117 ~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------------------------------------  157 (381)
T COG3391         117 GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------------------------------------  157 (381)
T ss_pred             CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------------------------------------
Confidence            3556788  788888877644   6788888877765543311                                     


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                             .+. .+ ..++++|+|+.++..  .++.|.+.|.. ......  ........ -...
T Consensus       158 -----------------------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~--~~~~~~~~-~~~~  208 (381)
T COG3391         158 -----------------------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR--GSVGSLVG-VGTG  208 (381)
T ss_pred             -----------------------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec--cccccccc-cCCC
Confidence                                   111 22 778999999977776  69999999977 333221  00000011 1233


Q ss_pred             eEEEEEeCCCCCEEEEEe-CC--CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          270 ITSAEFHPIYCNLLAYSS-SR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...+.++|+| ..+.... .+  +.+...|..++.....   ....   .         -. ....+..+|+|+++.+..
T Consensus       209 P~~i~v~~~g-~~~yV~~~~~~~~~v~~id~~~~~v~~~---~~~~---~---------~~-~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         209 PAGIAVDPDG-NRVYVANDGSGSNNVLKIDTATGNVTAT---DLPV---G---------SG-APRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             CceEEECCCC-CEEEEEeccCCCceEEEEeCCCceEEEe---cccc---c---------cC-CCCceeECCCCCEEEEEe
Confidence            4688999999 6444433 33  5888889888653210   0011   0         01 345689999999988874


Q ss_pred             -c-CeEEEEEccCCCcceEEEec
Q 015290          347 -Y-MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       347 -~-~~v~iwd~~~~~~~~~~~~~  367 (409)
                       . +.+.+-|..+ ......+..
T Consensus       272 ~~~~~V~vid~~~-~~v~~~~~~  293 (381)
T COG3391         272 SQGGTVSVIDGAT-DRVVKTGPT  293 (381)
T ss_pred             cCCCeEEEEeCCC-Cceeeeecc
Confidence             4 8999999875 444444443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.57  E-value=0.0018  Score=61.59  Aligned_cols=122  Identities=10%  Similarity=0.064  Sum_probs=65.7

Q ss_pred             CCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE-----------EeCCCCCEEEEEeCCCeEEE
Q 015290          227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-----------FHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       227 ~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~~l~s~s~dg~i~i  294 (409)
                      -++.-++..+ .++.|++..+.....  ..       +.+|..++..++           .+||| +.|+.++.||.++.
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR--SL-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGF  261 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH--HH-------HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccce
Confidence            3455667778 888888877652222  22       344654444433           68999 99999999999998


Q ss_pred             EeCCC-ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcce
Q 015290          295 VDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV  362 (409)
Q Consensus       295 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~  362 (409)
                      |.+.- ++........|+.|...|..-..+..|...+-.+-   .-.++++++|  ..+++|.... -+|+
T Consensus       262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~---~w~~~Itttd~nre~k~w~~a~-w~Cl  328 (1283)
T KOG1916|consen  262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG---KWVLRITTTDVNREEKFWAEAP-WQCL  328 (1283)
T ss_pred             eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc---eeEEEEecccCCcceeEeeccc-hhhh
Confidence            87642 32222233445554322211111111111111110   0135667776  7799998753 4444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.55  E-value=0.012  Score=34.64  Aligned_cols=30  Identities=17%  Similarity=0.577  Sum_probs=27.6

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~  145 (409)
                      ..|..++|  +|...+||.+..+|.|.+++++
T Consensus        12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence            68999999  6889999999999999999994

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.39  Score=40.16  Aligned_cols=160  Identities=13%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             eeEEEeCCCC-CeEEEe-cCCe-EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-----CCeE
Q 015290          221 INSISNNSDC-ETFVSA-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFV  292 (409)
Q Consensus       221 v~~l~~~~~~-~~l~~~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----dg~i  292 (409)
                      -..++++|.. .-++.+ .-|+ ..++|.......+.....+..-+.+|      =.|+||| .+|+..-.     .|.|
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG-~~LYATEndfd~~rGVi  142 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDG-RLLYATENDFDPNRGVI  142 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCC-cEEEeecCCCCCCCceE
Confidence            3467888874 445556 5554 57889883333333322221222333      4689999 88776543     3789


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE--------EccCCCcc-eE
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW--------DIRMDSTP-VA  363 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw--------d~~~~~~~-~~  363 (409)
                      -|||.+.+-.   .+..+             ..|.-....+.|.+||+.|+.+. |.|..-        ++.+ .++ +.
T Consensus       143 GvYd~r~~fq---rvgE~-------------~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNlds-MePSlv  204 (366)
T COG3490         143 GVYDAREGFQ---RVGEF-------------STHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLDS-MEPSLV  204 (366)
T ss_pred             EEEecccccc---eeccc-------------ccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchhh-cCccEE
Confidence            9999986421   12222             33344567789999999998764 333322        2221 122 12


Q ss_pred             EEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      .+..-.+..-+...+-......+++.++..+||+.++.+-.-
T Consensus       205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence            222111111111112222344456789999999887766443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.015  Score=56.76  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ecCeEEEEEccCCC
Q 015290          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  359 (409)
Q Consensus       281 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~  359 (409)
                      -.++.|+..|.+-..|++.+ ++.   -....+.            .++|++++|+.+|..++.| ++|.|.+||... +
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne~v------------~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQNERV------------QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc-cch---hhcCCcc------------CCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence            57888888899988888764 210   0111100            4689999999999999999 469999999986 7


Q ss_pred             cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ++++.+..+..+..            +|..+.+..++..+.++...|.
T Consensus       163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc
Confidence            88888887776542            2245666667777777766663

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.43  E-value=0.28  Score=41.49  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=84.7

Q ss_pred             ceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe-
Q 015290          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd-  296 (409)
                      .+.+.+++++++.++..  .++.-.||-....+.....       ..  ...+....|++++ .+.+....+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------LT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------cc--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence            67889999999877764  3555555554422332222       12  2367788999998 7777766666666663 


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----cCeEEEEEccCCCcc-eEEEecccCc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL  371 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~~~v~iwd~~~~~~~-~~~~~~~~~~  371 (409)
                      ...+......+.....              ...|..+.+||||..+|...    ++.|.+--+..+..- ...+......
T Consensus        95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~  160 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV  160 (253)
T ss_pred             cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence            3333221100111111              12799999999998877543    377777765432111 1111100000


Q ss_pred             ccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ..        .....+.+++|.+++.+++.+...
T Consensus       161 ~~--------~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  161 AP--------PLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             cc--------cccCcceeeeecCCCEEEEEeCCC
Confidence            00        001123699999999887765544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.27  E-value=0.66  Score=44.49  Aligned_cols=126  Identities=10%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             eeEEEeCCCCCeEEEe-cC-CeEEEEEccCCCceeeeeecCCCcCc-CccCceEEEEEeCCCCCEEEEEeCCCeEEE---
Q 015290          221 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---  294 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i---  294 (409)
                      ...-.|+|+|+.+++. .. ..+++.+.. ....+..+.+...... .....|.++.|+||| ..++... ++.|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~-~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDP-ATGQLARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccC-CCceEEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence            5667899998888876 33 233343332 1222222222211111 234579999999999 7666654 466666   


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcc
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP  361 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~  361 (409)
                      -....+.........+.            .+-...+.++.|.+++.+++...++...+|-+..++..
T Consensus       476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence            33333321100000011            11123457899999998664433333445555443443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.14  E-value=0.95  Score=40.70  Aligned_cols=119  Identities=12%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe--CCCCCEEEEEeCCCeEEEE-eCCCcccccccccccccc
Q 015290          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLV-DMRQSALCDHSARILRDA  313 (409)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~~  313 (409)
                      ...++.+||+. .++.++++++..     .......+.|.  |+...=|+.+.....|..| ....++...  .++.+..
T Consensus       220 yG~~l~vWD~~-~r~~~Q~idLg~-----~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a--~kVi~ip  291 (461)
T PF05694_consen  220 YGHSLHVWDWS-TRKLLQTIDLGE-----EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA--EKVIDIP  291 (461)
T ss_dssp             S--EEEEEETT-TTEEEEEEES-T-----TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE--EEEEEE-
T ss_pred             ccCeEEEEECC-CCcEeeEEecCC-----CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee--eEEEECC
Confidence            45689999999 788888876442     22335567775  3331223333334444444 323332111  1111110


Q ss_pred             c------cccCCcccccccccceeeeEeccCCCEEEEee--cCeEEEEEccCCCcceE
Q 015290          314 A------ESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA  363 (409)
Q Consensus       314 ~------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--~~~v~iwd~~~~~~~~~  363 (409)
                      .      .-|.....|..-..-|+.+.+|.|.++|...+  .|.|+.||+....++..
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence            0      00011111222235689999999999999886  39999999975444433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.044  Score=53.77  Aligned_cols=104  Identities=14%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc
Q 015290          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (409)
Q Consensus       229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  307 (409)
                      .+..++.| ..|.+...|+..+-.....       -..-.++|++++|+.+| ..++.|-.+|.|.+||+..++.    +
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~-------ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQ-------NERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhc-------CCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence            35567778 8888888888722111111       22335789999999999 9999999999999999998765    3


Q ss_pred             ccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      +.+..|. .|         ...+..+.+..++..+.+++. |.  +|.+.
T Consensus       166 ~~i~e~~-ap---------~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  166 KVITEHG-AP---------VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeeeecC-Cc---------cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            4444321 00         123444555555566666654 54  66554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.90  E-value=0.34  Score=46.14  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe--CCCCCEEEEEeCCCeEEEEeC
Q 015290          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      +.-+.-+.-++..++. ....+.|||.+ .+.....     ..+ ...+.|.++.|.  |++ +.+++.+..+.|.+|--
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~lE~~-----~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTR-SGVLEYE-----ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcC-CcEEEEe-----eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence            3444445545544445 66789999998 4442221     112 346788999986  777 88888888889998853


Q ss_pred             C-----CccccccccccccccccccCCcccccccc-cceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290          298 R-----QSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       298 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~  357 (409)
                      .     +.......++.+..           ..|+ .+|.+..|.++|.++ .|+.+.+.|+|-..
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i-----------~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~~  157 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDI-----------SSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKWL  157 (631)
T ss_pred             cchhhhcCCcccceeEEEEe-----------ecCCCCCccceeEecCCeEE-EEeCCEEEEECCCc
Confidence            2     11111111222211           1222 478999999998555 44458899998643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.88  E-value=1  Score=38.75  Aligned_cols=125  Identities=11%  Similarity=0.064  Sum_probs=69.2

Q ss_pred             ceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeee--cCCC----cCcCccCceEEEE--EeCCCCCEEEEEeCCCe
Q 015290          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD--MKPS----NMDDLTEVITSAE--FHPIYCNLLAYSSSRGF  291 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~--~~~~----~~~~~~~~v~~~~--~~p~~~~~l~s~s~dg~  291 (409)
                      .|..+...|+-+.|++-.|+.+.++++..-......-.  ....    ........+...+  -...+...|+. .....
T Consensus        37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE-EECCE
Confidence            38889998887777766779999999873221110000  0000    0011122333333  11333134444 44558


Q ss_pred             EEEEeCCCccccc-cccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcce
Q 015290          292 VRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV  362 (409)
Q Consensus       292 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~  362 (409)
                      |.+|......... ...+.+..              ...+..++|.  ++.|+.|..+...+.|+.+ +...
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~  170 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISL--------------PDPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPS  170 (275)
T ss_pred             EEEEEEECCcccccceeEEEEc--------------CCCcEEEEEe--CCEEEEEeCCceEEEecCC-CCce
Confidence            9998877642221 22233333              3568888888  5678888777788899874 4443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.87  E-value=1  Score=38.72  Aligned_cols=221  Identities=8%  Similarity=0.033  Sum_probs=106.6

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc-CCCccc-cccccc-ccccCcee-ccCCCCCceeeccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFV-SSENTL-LAEKNFMN-EHNPPSFAHGYHLE  189 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~  189 (409)
                      ..|..+...  ++-+.|++-+ |+.+.++++..-........ ...... ...... ......+. .........+..+.
T Consensus        36 ~~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~  112 (275)
T PF00780_consen   36 SSITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV  112 (275)
T ss_pred             ceEEEEEEe--cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE
Confidence            358888885  4444555444 49999999875433321100 000000 000000 00111111 11112222222222


Q ss_pred             ccccceeEEEecCCcc-cc-eeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCc-----
Q 015290          190 WTENMATKIANVGNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----  262 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~-~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~-----  262 (409)
                         ...+.+|...... .. ...+.+  .-...+.+++|.  ++.++.|......+.|+. ++......+.....     
T Consensus       113 ---kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~  184 (275)
T PF00780_consen  113 ---KKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKS  184 (275)
T ss_pred             ---CCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhh
Confidence               3367777766532 22 333433  234677888888  667888844558889988 55544443222111     


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      ......++..+... ++ .+|++-  +..-.+.|. .|+......-.|..                ...++++.  ..||
T Consensus       185 ~~~~~~~~~~~~~~-~~-e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~----------------~p~~~~~~--~pyl  241 (275)
T PF00780_consen  185 RNSSSKPLGIFQLS-DN-EFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS----------------APQSVAYS--SPYL  241 (275)
T ss_pred             cccCCCceEEEEeC-Cc-eEEEEe--cceEEEEcC-CCCcCcccEEEcCC----------------chhEEEEE--CCEE
Confidence            00111233333333 34 555543  333333443 33221111112222                45556664  4588


Q ss_pred             EEeecCeEEEEEccCCCcceEEEeccc
Q 015290          343 LSRDYMNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       343 ~sg~~~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      ++..++.|.||++.+ +++++.+....
T Consensus       242 i~~~~~~iEV~~~~~-~~lvQ~i~~~~  267 (275)
T PF00780_consen  242 IAFSSNSIEVRSLET-GELVQTIPLPN  267 (275)
T ss_pred             EEECCCEEEEEECcC-CcEEEEEECCC
Confidence            888778899999986 88888887443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.82  E-value=0.33  Score=39.38  Aligned_cols=47  Identities=13%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             EEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeC
Q 015290          223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  277 (409)
Q Consensus       223 ~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  277 (409)
                      .+++..+|...++. ..++|...|.. +++.+..+.+       ....+++++|--
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~-tGK~L~eikl-------Pt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPT-TGKILLEIKL-------PTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCC-CCcEEEEEEc-------CCCceEEEEecC
Confidence            45567788888888 99999999998 7777766432       256789999963

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.80  E-value=1  Score=38.17  Aligned_cols=70  Identities=11%  Similarity=0.057  Sum_probs=42.3

Q ss_pred             ceeEEEeCCCCCeEEEe----cCCeEEEEEccCCCce-eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC
Q 015290          220 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~----~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg  290 (409)
                      .|..+.++|||..++..    .++.|.+--+.....- -..+.............+.++.|.+++ .+++.+...+
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~  187 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAG  187 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCCC
Confidence            89999999999988864    3677777655422211 111100101122334678999999998 7666655433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.64  E-value=0.39  Score=45.74  Aligned_cols=89  Identities=17%  Similarity=0.367  Sum_probs=58.7

Q ss_pred             cccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (409)
Q Consensus        10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (409)
                      ....|.....+...        -...+-+.-+.-++.-++-+....+.|||...+..                       
T Consensus        15 ~~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l-----------------------   63 (631)
T PF12234_consen   15 NKIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL-----------------------   63 (631)
T ss_pred             CeEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE-----------------------
Confidence            44567776655432        22344445555555555544556899999987653                       


Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~  144 (409)
                        +.-..+..+             +.|.++.|...|+|+.+++.+..+.|.++--
T Consensus        64 --E~~~~f~~~-------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   64 --EYEESFSED-------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             --EEeeeecCC-------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence              122223222             6899999998899999999999999999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.63  E-value=1.5  Score=40.27  Aligned_cols=114  Identities=12%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             eeEEEeCCCCCeEEEe--cCC----eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----
Q 015290          221 INSISNNSDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----  289 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----  289 (409)
                      +....++|++++++.+  ..|    .++++|+. +++.+.-.      +..-  ....+.|.+++ +.|+....+     
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~-tg~~l~d~------i~~~--~~~~~~W~~d~-~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE-TGKFLPDG------IENP--KFSSVSWSDDG-KGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT-TTEEEEEE------EEEE--ESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECC-CCcCcCCc------cccc--ccceEEEeCCC-CEEEEEEeCccccc
Confidence            3467899999999975  333    59999998 55544321      1111  12349999998 666555432     


Q ss_pred             ------CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----c-CeEEEEEccC
Q 015290          290 ------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRM  357 (409)
Q Consensus       290 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~-~~v~iwd~~~  357 (409)
                            ..|..|.+.+.....  ..+++. ...          ......+..++|+++|+...    + ..+.+.|+..
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~d--~lvfe~-~~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSED--ELVFEE-PDE----------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG---EEEEC--TTC----------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             ccCCCCcEEEEEECCCChHhC--eeEEee-cCC----------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                  236777776643211  123333 100          11256788999999987532    2 4688888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.53  E-value=2  Score=39.60  Aligned_cols=59  Identities=14%  Similarity=0.063  Sum_probs=37.4

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (409)
                      ...+.|+|.|++++|++- ..|.|++++.. .+.......++.............|+++|+
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCC
Confidence            456889999999877777 47999999865 332222222221101112567889999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.38  E-value=1.4  Score=39.72  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=53.6

Q ss_pred             cceeEEEeCCCCCeEEEe-c-----------C-CeEEEEEcc-CCCce--eeeeecCCCcCcCccCceEEEEEeCCCCCE
Q 015290          219 FNINSISNNSDCETFVSA-D-----------D-LRINLWNLE-ISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~-----------d-~~i~lwd~~-~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  282 (409)
                      .....|+|.++|+.+++- .           . +.|.+++-. ..+..  ..+       +...-.....+++.+++  +
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--l   84 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--V   84 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC--E
Confidence            345789999999887763 1           1 266666543 11221  122       22222345789999886  3


Q ss_pred             EEEEeCCCeEEEEeCCCccccc-cccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          283 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       283 l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      ++ ++.....++.|........ ....++..  ...  .  ...+......++|.|||.+.++
T Consensus        85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~--~~~--~--~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        85 YV-ATPPDILFLRDKDGDDKADGEREVLLSG--FGG--Q--INNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EE-eCCCeEEEEeCCCCCCCCCCccEEEEEc--cCC--C--CCcccccccCceECCCCCEEEe
Confidence            33 3444433344543321111 00011111  000  0  0001245778999999986654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.37  E-value=1.7  Score=37.74  Aligned_cols=117  Identities=13%  Similarity=0.096  Sum_probs=60.6

Q ss_pred             cccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      -...|..|.|.|++...+.+..|.|++=+..........   .......-.-.+..++|.+++ ...++|+.. .+ +..
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l-~~S  258 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL-LVS  258 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEE
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE-EEe
Confidence            456789999999988777668888888772211221111   100111223347899999987 777766654 33 334


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw  353 (409)
                      ...++       .|+.....       ..-...+..+.|.++.+-++.|.+|.|--|
T Consensus       259 ~DgGk-------tW~~~~~~-------~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  259 TDGGK-------TWQKDRVG-------ENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             SSTTS-------S-EE-GGG-------TTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCCCc-------cceECccc-------cCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            44443       22220000       000246788999888888888888877554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.22  E-value=0.1  Score=41.96  Aligned_cols=61  Identities=13%  Similarity=0.104  Sum_probs=33.6

Q ss_pred             CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc-CceEEEEEeCCCCCEEEEE--eCCCeEEEEeCC
Q 015290          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYS--SSRGFVRLVDMR  298 (409)
Q Consensus       229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~--s~dg~i~iwd~~  298 (409)
                      ++.+..++ .||.|+.|++. ..+.+..       ...|. ..+..+..+..+ ..++.+  |.|..++.|++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~-p~k~~g~-------~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIK-PNKVLGY-------VGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccceeEEeccCCceeeeccc-cCceeee-------eccccCCCcceeEEecCC-ceEEeeccccchhhhhcchh
Confidence            34566777 99999999998 5554443       23344 233333333333 444444  455555555544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.21  E-value=0.94  Score=44.40  Aligned_cols=95  Identities=18%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC--cc---ccccccccccccccccCCcccc-cccccceeeeEeccCC--
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SA---LCDHSARILRDAAESHGSKSFF-TEIIASISDIKFANDG--  339 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~--~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g--  339 (409)
                      ..|..+.++|+| .+++..|..|. .|-.+..  +.   ..... ....+ ..-+.....| ..+...|..+.|+|.+  
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~-~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRGV-VVLELPRRWGKNGEFEDGK-KEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCcE-EEEEeccccCccccccCCC-cceeE-EEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            468899999999 88888887764 4444422  10   00000 00111 0000011112 2335689999999974  


Q ss_pred             -CEEEE-eecCeEEEEEccCCCcceEEEe
Q 015290          340 -QHLLS-RDYMNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       340 -~~l~s-g~~~~v~iwd~~~~~~~~~~~~  366 (409)
                       ..|+. .+|+++|+||+.....+..++.
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence             55555 4679999999976455555554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.21  E-value=0.089  Score=42.32  Aligned_cols=64  Identities=13%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce-EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc
Q 015290          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (409)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~  301 (409)
                      +..+++| .+|.|.+|.....+.....+       ......| ..+.--.++ .+..+++.||.|+.|++.-++
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k  135 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNK  135 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCc
Confidence            5678888 99999999887334333221       1111222 222222333 588899999999999987654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.17  E-value=2  Score=37.52  Aligned_cols=61  Identities=15%  Similarity=0.133  Sum_probs=39.4

Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEEec
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      .|-++|+.+++.    +..+..              ..++.++..+.+.+ +|.+.+  ++.|.+||..+ ++.+..+..
T Consensus       270 eVWv~D~~t~kr----v~Ri~l--------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKR----VARIPL--------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEE----EEEEEE--------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred             EEEEEECCCCeE----EEEEeC--------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhc
Confidence            477778877653    234443              34688999999886 554433  48999999997 888888875


Q ss_pred             ccC
Q 015290          368 HEH  370 (409)
Q Consensus       368 ~~~  370 (409)
                      -..
T Consensus       331 lG~  333 (342)
T PF06433_consen  331 LGE  333 (342)
T ss_dssp             -SS
T ss_pred             cCC
Confidence            444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.10  E-value=0.51  Score=38.94  Aligned_cols=100  Identities=20%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  352 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~i  352 (409)
                      ...++...+++.|+..+.+.--|..+++.....  ++.                ..+.+-+.- -|.+++.|.. |.+++
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYf   77 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--ILG----------------VRIECSAIV-VGDFVVLGCYSGGLYF   77 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeeh--hhC----------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence            344554478889999999999999998753221  111                123222222 4678888986 99999


Q ss_pred             EEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+.++ |.....+..-+...               ......+++..+..|++|++.
T Consensus        78 l~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~  117 (354)
T KOG4649|consen   78 LCVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNF  117 (354)
T ss_pred             EEecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcE
Confidence            99987 76666665544432               356778899999999999863

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.07  E-value=0.13  Score=29.34  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=24.0

Q ss_pred             ceeeeEeccCC---CEEEEeec-CeEEEEEccC
Q 015290          329 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM  357 (409)
Q Consensus       329 ~i~~~~~s~~g---~~l~sg~~-~~v~iwd~~~  357 (409)
                      .+.++.|||+.   .+|+...+ +.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58899999854   48887777 9999999984

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.92  E-value=0.21  Score=41.12  Aligned_cols=79  Identities=9%  Similarity=0.072  Sum_probs=52.3

Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  354 (409)
Q Consensus       275 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd  354 (409)
                      +..++ ++|++...+|.+++||+.+++.......+...=...+ ...  ......|..+.++.+|.-|++-++|..+.|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-ccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            44556 8899999999999999999765332211111100000 000  0234678999999999988888888899999


Q ss_pred             ccC
Q 015290          355 IRM  357 (409)
Q Consensus       355 ~~~  357 (409)
                      .+.
T Consensus        94 ~~L   96 (219)
T PF07569_consen   94 PDL   96 (219)
T ss_pred             ccc
Confidence            874

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.90  E-value=0.13  Score=29.28  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=26.7

Q ss_pred             CceEEEEEeCCCC--CEEEEEeCCCeEEEEeCCC
Q 015290          268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       268 ~~v~~~~~~p~~~--~~l~s~s~dg~i~iwd~~~  299 (409)
                      +.+.++.|+|...  .+|+.+-.-|.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998763  5888888889999999995

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=0.67  Score=46.36  Aligned_cols=153  Identities=11%  Similarity=0.006  Sum_probs=89.9

Q ss_pred             cceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCcee--eeeecCCC-cCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          219 FNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCF--NIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~--~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      .++..+...+|+...++  . .+-.|..||++.-....  ....++.. ..........++.|+|.-+...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34555666677655544  3 55578889987211111  00000000 0111234456788998876677778889988


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCc
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      ++.-+......   ...+..              ....++++|+|.|+.++.|.. |++.-|...  .+....+......
T Consensus       181 ~V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~  241 (1405)
T KOG3630|consen  181 RVKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE  241 (1405)
T ss_pred             hhhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC
Confidence            88766542211   111222              357899999999999999976 999888865  3444444332221


Q ss_pred             ccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                              +   .+.|.+++|-..-.+|++
T Consensus       242 --------e---~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  242 --------E---NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             --------C---CcceeEEEEecceeEEEE
Confidence                    1   234478999877766664

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.69  E-value=0.9  Score=41.52  Aligned_cols=68  Identities=12%  Similarity=0.163  Sum_probs=49.2

Q ss_pred             ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290          220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~  298 (409)
                      ...|.+-..+| ++++| .+|.|++||-- .......       +++...+|..+..+.+| ++++.. .+..+.+.++.
T Consensus       432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA-------lPgLG~~I~hVdvtadG-Kwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  432 NFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA-------LPGLGDAIKHVDVTADG-KWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             ccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc-------ccccCCceeeEEeeccC-cEEEEe-cccEEEEEEEe
Confidence            45667666666 67777 99999999974 3333322       78889999999999999 766644 35667777654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.66  E-value=0.8  Score=42.52  Aligned_cols=146  Identities=10%  Similarity=-0.006  Sum_probs=77.9

Q ss_pred             cceeEEEeCCCCCeEEEe---cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC---CEEEEEeCCCeE
Q 015290          219 FNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFV  292 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~i  292 (409)
                      .++..++|....+.+++.   .+|.+++=|-.               ..+.-..|..+.|.|-+.   ..|++......|
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV   84 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV   84 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence            357788997433344454   35555544332               122234688999998641   244555677889


Q ss_pred             EEEeCCCcccc-ccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccC
Q 015290          293 RLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       293 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                      .+|.+...... .+......++-..+     |   .---..+.|+|....|+.-.. ..=.+++++.+...++.--...+
T Consensus        85 tVWqL~~s~~e~~K~l~sQtcEi~e~-----~---pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G  156 (671)
T PF15390_consen   85 TVWQLCPSTTERNKLLMSQTCEIREP-----F---PVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSG  156 (671)
T ss_pred             EEEEeccCccccccceeeeeeeccCC-----c---ccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCc
Confidence            99987632110 00000000100000     0   011246789999888886554 33345666543433332222333


Q ss_pred             cccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      .+               .+.+|.+||++|+.+
T Consensus       157 ~I---------------hCACWT~DG~RLVVA  173 (671)
T PF15390_consen  157 LI---------------HCACWTKDGQRLVVA  173 (671)
T ss_pred             eE---------------EEEEecCcCCEEEEE
Confidence            33               599999999988754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=0.37  Score=48.02  Aligned_cols=61  Identities=5%  Similarity=0.028  Sum_probs=42.6

Q ss_pred             ccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                      ....++++|+|.|+.++.| ..|++.-|...  .+....+..++  ... ...|.+|+|-... .+++
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp--~~e-~yrvl~v~Wl~t~-eflv  259 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPP--VEE-NYRVLSVTWLSTQ-EFLV  259 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCC--cCC-CcceeEEEEecce-eEEE
Confidence            3457899999999999999 99999888766  33333332222  111 5789999998765 4444

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.50  E-value=3.9  Score=37.65  Aligned_cols=242  Identities=14%  Similarity=0.159  Sum_probs=117.9

Q ss_pred             cEEEEEECCCCCEEEEE-ecCC----eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           34 IVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+..+.++|||+++|.+ +..|    .++++|+.+++..                          ...+..         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--------------------------~d~i~~---------  169 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--------------------------PDGIEN---------  169 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--------------------------EEEEEE---------
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--------------------------CCcccc---------
Confidence            44578999999999866 3334    5999999987631                          111111         


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCC-----------eEEEEEcCCceee--eeeccCCCcccccccccccccC-ce
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDK-----------TIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKN-FM  174 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~-----------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~  174 (409)
                           ..-..+.|  .++++.|+....+.           .|+.|++.+....  .++...            .... .+
T Consensus       170 -----~~~~~~~W--~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~------------~~~~~~~  230 (414)
T PF02897_consen  170 -----PKFSSVSW--SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP------------DEPFWFV  230 (414)
T ss_dssp             -----EESEEEEE--CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T------------TCTTSEE
T ss_pred             -----cccceEEE--eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec------------CCCcEEE
Confidence                 11223899  68888776654332           3677777665432  222211            1111 23


Q ss_pred             eccCCCCCceeecccc-ccc-ceeEEEecCCc--ccceeeeeeccccccceeEEEeCCCCCeEEEe----cCCeEEEEEc
Q 015290          175 NEHNPPSFAHGYHLEW-TEN-MATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNL  246 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~----~d~~i~lwd~  246 (409)
                      .+..+.++.++..... ... ..+.+.++...  ......... ....+....+... .+.+++..    ..+.|.-.++
T Consensus       231 ~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l  308 (414)
T PF02897_consen  231 SVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDL  308 (414)
T ss_dssp             EEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEET
T ss_pred             EEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecc
Confidence            3444455555443322 223 56777777653  111222211 2233333334333 34344432    3567777777


Q ss_pred             cCCCc--eeeeeecCCCcCcCccC--ceEEEEEeCCCCCEEEEEeCCC--eEEEEeCC-CccccccccccccccccccCC
Q 015290          247 EISDQ--CFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRG--FVRLVDMR-QSALCDHSARILRDAAESHGS  319 (409)
Q Consensus       247 ~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~  319 (409)
                      .....  ....       +..+..  .+..+....+  .+++....++  .|+++|+. .....  .+....        
T Consensus       309 ~~~~~~~~~~~-------l~~~~~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~--~~~~p~--------  369 (414)
T PF02897_consen  309 ADPSPAEWWTV-------LIPEDEDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESR--EIPLPE--------  369 (414)
T ss_dssp             TSTSGGGEEEE-------EE--SSSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEE--EEESSS--------
T ss_pred             cccccccceeE-------EcCCCCceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEe--eecCCc--------
Confidence            73332  1112       333444  3555554433  4555555554  58889988 43221  011111        


Q ss_pred             cccccccccceeeeEeccCCCEEE-E-ee--c-CeEEEEEccC
Q 015290          320 KSFFTEIIASISDIKFANDGQHLL-S-RD--Y-MNLKLWDIRM  357 (409)
Q Consensus       320 ~~~~~~~~~~i~~~~~s~~g~~l~-s-g~--~-~~v~iwd~~~  357 (409)
                             .+.|..+...+++..+. + .+  . .+++.||+.+
T Consensus       370 -------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  370 -------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             -------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             -------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence                   23455565556665433 2 23  2 8899999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.44  E-value=3.6  Score=37.11  Aligned_cols=18  Identities=22%  Similarity=0.252  Sum_probs=14.0

Q ss_pred             CcEEEEEECCCCCEEEEE
Q 015290           33 DIVSAIEFDKTGDYLAVG   50 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~   50 (409)
                      .....|+|.++|+++++-
T Consensus        14 ~~P~~ia~d~~G~l~V~e   31 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAE   31 (367)
T ss_pred             CCCceeeECCCCCEEEEe
Confidence            345789999999977664

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.25  E-value=3  Score=35.38  Aligned_cols=176  Identities=13%  Similarity=0.143  Sum_probs=102.5

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee--ecCCCcccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS  109 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~  109 (409)
                      ...|+++.|+|+.+.|++..+...-.|+=...++.                           +++  +.+-         
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl---------------------------irtiPL~g~---------  128 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL---------------------------IRTIPLTGF---------  128 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCce---------------------------EEEeccccc---------
Confidence            34599999999988888777666666665444442                           222  2221         


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ...-.|.|  -.++++.++--.++.+.++.+..+........                                  
T Consensus       129 ----~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~----------------------------------  168 (316)
T COG3204         129 ----SDPETIEY--IGGNQFVIVDERDRALYLFTVDADTTVISAKV----------------------------------  168 (316)
T ss_pred             ----CChhHeEE--ecCCEEEEEehhcceEEEEEEcCCccEEeccc----------------------------------
Confidence                23446777  36777777778888888887765532221110                                  


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCC--cCcCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMDDL  266 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~--~~~~~  266 (409)
                          -.+.            +... .......-.++|.|..+.|..+ .-.-+.||.+......+..-.....  ...-.
T Consensus       169 ----~~i~------------L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         169 ----QKIP------------LGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             ----eEEe------------cccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence                0000            1111 1114556789999999999998 7777777777622222221000000  00001


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      -..+.++.|++....+|+-+..++.+.-.|....
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            2346788898766467777777787777776653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=4.1  Score=36.84  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~   65 (409)
                      ..++|.++.||+|.+.||+--.+.+|.+++....+
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            56799999999999999999999999999985443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.16  E-value=5.2  Score=37.76  Aligned_cols=28  Identities=11%  Similarity=-0.092  Sum_probs=23.6

Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290          128 SMFILSTNDKTIKLWKVRDQKVKKIKEM  155 (409)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~  155 (409)
                      ..++.++.++.|.-+|.++++.......
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            5788888899999999999988877654

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.00  E-value=4.3  Score=36.25  Aligned_cols=116  Identities=14%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             eeEEEeCCCCCeEEE-e-----cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC----
Q 015290          221 INSISNNSDCETFVS-A-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----  290 (409)
Q Consensus       221 v~~l~~~~~~~~l~~-~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg----  290 (409)
                      +..=-|.|||..+.. +     .+..|.-+|.. ++.......         ......+--+++| ++++-=+.|.    
T Consensus       240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~~~~~~~~---------~p~~~H~~ss~Dg-~L~vGDG~d~p~~v  308 (386)
T PF14583_consen  240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TGERRRLME---------MPWCSHFMSSPDG-KLFVGDGGDAPVDV  308 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T--EEEEEE---------E-SEEEEEE-TTS-SEEEEEE-------
T ss_pred             cccccccCCCCEEEEEeecCCCCceEEEeeCCC-CCCceEEEe---------CCceeeeEEcCCC-CEEEecCCCCCccc
Confidence            344457899987764 2     23355666766 333222211         1123455667888 7776533332    


Q ss_pred             ------------eEEEEeCCCccccccccccccccccccCCccccccccc-ceeeeEeccCCCEEEEeec--CeEEEEEc
Q 015290          291 ------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY--MNLKLWDI  355 (409)
Q Consensus       291 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~sg~~--~~v~iwd~  355 (409)
                                  .|.++++..+..     ..+..|..+..   .+.++.. .--...|+|||++|+-.++  |...||=+
T Consensus       309 ~~~~~~~~~~~p~i~~~~~~~~~~-----~~l~~h~~sw~---v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  309 ADAGGYKIENDPWIYLFDVEAGRF-----RKLARHDTSWK---VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ------------EEEEEETTTTEE-----EEEEE----------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             cccccceecCCcEEEEeccccCce-----eeeeeccCcce---eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                        456677765542     12222211110   0111111 1245799999999987765  66666543

>PHA02713 hypothetical protein; Provisional

Probab=93.88  E-value=4.6  Score=38.81  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=17.6

Q ss_pred             CCCCEEEEEeCCC-----eEEEEEcCCceeee
Q 015290          125 PNGSMFILSTNDK-----TIKLWKVRDQKVKK  151 (409)
Q Consensus       125 ~~~~~l~s~~~d~-----~i~iwd~~~~~~~~  151 (409)
                      -+|+..+.||.++     ++..||..++....
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            3666777777653     47778877766544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.84  E-value=7.8  Score=38.69  Aligned_cols=32  Identities=19%  Similarity=0.195  Sum_probs=23.6

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~   64 (409)
                      ..|....|-.|..+|.++..||.+..|-++..
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDIN  615 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence            34555566667789999999999987766543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.53  E-value=3.5  Score=33.71  Aligned_cols=94  Identities=10%  Similarity=0.022  Sum_probs=55.1

Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEe--CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~  346 (409)
                      -+.++|+.+...+.++-+.+-+|.-||  ..++..... ..++......|     +.  ....-.++...+|.+.++. +
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~-----~e--~~~PDGm~ID~eG~L~Va~~n  231 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQP-----FE--SLEPDGMTIDTEGNLYVATFN  231 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCC-----cC--CCCCCcceEccCCcEEEEEec
Confidence            357889988734444556677787787  555543211 12222200000     00  0112334556678766665 4


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcc
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLR  372 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~  372 (409)
                      .++|...|..+ |+.+..++-....+
T Consensus       232 g~~V~~~dp~t-GK~L~eiklPt~qi  256 (310)
T KOG4499|consen  232 GGTVQKVDPTT-GKILLEIKLPTPQI  256 (310)
T ss_pred             CcEEEEECCCC-CcEEEEEEcCCCce
Confidence            49999999987 99999988776655

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.53  E-value=2.5  Score=38.09  Aligned_cols=143  Identities=8%  Similarity=-0.030  Sum_probs=85.5

Q ss_pred             eEEEeCCCCCeEEEecCCeEEEEEccCCCcee-eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          222 NSISNNSDCETFVSADDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       222 ~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      +.+-|....+.+++...|.+.-|.....+.-+ -.+      -....++|.++.|++|. +.+|.--.+++|.+++....
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSf------dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d   98 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISF------DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD   98 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCcee------eecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence            34545544444444455666667665222211 111      12245689999999999 99999999999999987443


Q ss_pred             cccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccC
Q 015290          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  380 (409)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (409)
                      +...........             -...|....|+.. .-+|--.+..+.+|......+.+...+.+.-.+        
T Consensus        99 ~~~l~~~~~ck~-------------k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nv--------  156 (657)
T KOG2377|consen   99 NSQLEYTQECKT-------------KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNV--------  156 (657)
T ss_pred             chhhHHHHHhcc-------------CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCc--------
Confidence            321100011111             1346888999876 566666666677777654345555555555544        


Q ss_pred             CCCccceeeEEEcCCCCeEE
Q 015290          381 NDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       381 ~~~~~~v~~~~~spdg~~l~  400 (409)
                             ....|.++-+.+.
T Consensus       157 -------nWy~yc~et~v~L  169 (657)
T KOG2377|consen  157 -------NWYMYCPETAVIL  169 (657)
T ss_pred             -------cEEEEccccceEe
Confidence                   3678888876533

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.82  E-value=11  Score=37.33  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=54.4

Q ss_pred             cccceeEEEeCCCCCeEEEecCCeEEEEEccCC-C---------c--eeeeeecCCCcC-cCccCceEEEEEeCCC--CC
Q 015290          217 HDFNINSISNNSDCETFVSADDLRINLWNLEIS-D---------Q--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CN  281 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~  281 (409)
                      -...|..+.++|+|..++......|.|-.+... +         .  ..+++.+...-+ ..+...|..+.|+|.+  ..
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            345788999999999998773344444444311 0         1  112222222212 2345678999999984  26


Q ss_pred             EEEEEeCCCeEEEEeCCCcc
Q 015290          282 LLAYSSSRGFVRLVDMRQSA  301 (409)
Q Consensus       282 ~l~s~s~dg~i~iwd~~~~~  301 (409)
                      .|+.-..|+++|+||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888899999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.79  E-value=2.5  Score=38.41  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE-EEEeCC--------------
Q 015290          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPI--------------  278 (409)
Q Consensus       215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~--------------  278 (409)
                      ......+.++..+|++++.++. .-|+|.|+|+. .+..+++       +++..+.-.. +.....              
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrm-------WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRM-------WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhh-------hccCccceEEEEEeecccccccccccccCCC
Confidence            4555668899999999988888 88999999998 6666665       3443322100 000000              


Q ss_pred             ---CCCEEEEEeCCCeEEEEeCCCcc
Q 015290          279 ---YCNLLAYSSSRGFVRLVDMRQSA  301 (409)
Q Consensus       279 ---~~~~l~s~s~dg~i~iwd~~~~~  301 (409)
                         .-.+++.+-..|.|-||.++.+.
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCCCC
Confidence               00144556778999999998864

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.72  E-value=9.9  Score=36.63  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             eEEEEEEecCCCCEEEEEeCC------CeEEEEEcCCceeee
Q 015290          116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKK  151 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~  151 (409)
                      -.+++.   .++...++|+.|      .++..||...++...
T Consensus       325 ~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  325 RVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             cccEEE---ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            445555   466788888888      356667777665443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.40  E-value=7  Score=34.14  Aligned_cols=83  Identities=16%  Similarity=0.040  Sum_probs=50.9

Q ss_pred             ccccceeEEEeCCCCCeEEEe--cCCeEEEEEccC-CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC-e
Q 015290          216 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-F  291 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-~  291 (409)
                      .+-..-+.|+||||++.|+.+  ..+.|.-|++.. ........  ....+....+..-.++...+| ++.+++-.+| .
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~--~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~  236 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR--GFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGR  236 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc--eEEEccCCCCCCCceEEeCCC-CEEEecccCCce
Confidence            334445789999999999888  457787777751 11111000  000022344566678888888 7775554444 8


Q ss_pred             EEEEeCCCccc
Q 015290          292 VRLVDMRQSAL  302 (409)
Q Consensus       292 i~iwd~~~~~~  302 (409)
                      |.+|+.. +++
T Consensus       237 v~~~~pd-G~l  246 (307)
T COG3386         237 VVRFNPD-GKL  246 (307)
T ss_pred             EEEECCC-CcE
Confidence            9999988 543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.36  E-value=2.8  Score=37.19  Aligned_cols=56  Identities=20%  Similarity=0.199  Sum_probs=35.3

Q ss_pred             ceeEEEeCCCCCeEEEecCCeEEEEEccCCCce-eeeeecCCCcCcCccCceEEEEEeCC
Q 015290          220 NINSISNNSDCETFVSADDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPI  278 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (409)
                      ..+.|+|.|+|+.+++-..|.|++++..  +.. .....+. ............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~--g~~~~~v~~~~-~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD--GSLKTPVADLP-EVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT--TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC--CcCcceecccc-cccccccCCcccceeccc
Confidence            3578999999877665599999999943  332 2222221 112334557899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=92.25  E-value=7.5  Score=34.11  Aligned_cols=241  Identities=11%  Similarity=0.059  Sum_probs=118.1

Q ss_pred             EEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          119 VRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       119 l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      +..  +|+++.+++++          ..-.|.+||..+-.......+...+....+      ...-....+.++.+++..
T Consensus        41 ~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~------~~~~~~~ls~dgk~~~V~  112 (342)
T PF06433_consen   41 VAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV------PYKNMFALSADGKFLYVQ  112 (342)
T ss_dssp             EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--------GGGEEE-TTSSEEEEE
T ss_pred             eeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec------ccccceEEccCCcEEEEE
Confidence            445  78999888753          344699999998876665544332111100      001111224455666666


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEE-ecCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~-~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.+...|.+-|++...   .+..+  .-.+   |.-.-|.+ +.+.+ |.||.+.-..+...++...... +  -+..-
T Consensus       113 N~TPa~SVtVVDl~~~k---vv~ei--~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~  181 (342)
T PF06433_consen  113 NFTPATSVTVVDLAAKK---VVGEI--DTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPD  181 (342)
T ss_dssp             EESSSEEEEEEETTTTE---EEEEE--EGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTT
T ss_pred             ccCCCCeEEEEECCCCc---eeeee--cCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-c--ccCCC
Confidence            66666778888876532   22221  0111   11122221 23444 4888888888875555442210 0  12222


Q ss_pred             cCc-eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          267 TEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       267 ~~~-v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ..+ +..-++...+ ..++--+.+|.|+--|+.......  ...+..-.... ....+.  .+.-.-+++++..+.|...
T Consensus       182 ~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e-~~~~Wr--PGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  182 DDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAE-KADGWR--PGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             TS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHH-HHTTEE--E-SSS-EEEETTTTEEEEE
T ss_pred             CcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccc-cccCcC--CcceeeeeeccccCeEEEE
Confidence            222 2234455555 556667889999888887654211  11111100000 000000  1234457777765544431


Q ss_pred             -------e--c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEE
Q 015290          346 -------D--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT  401 (409)
Q Consensus       346 -------~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s  401 (409)
                             +  +  ..|-++|+.+ ++.+..+......                .+++.+.|.+ +|.+
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYA  306 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEE
T ss_pred             ecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEE
Confidence                   1  1  2577788876 7888887743332                3788888766 5543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.01  E-value=5.1  Score=36.81  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=65.8

Q ss_pred             eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccc
Q 015290          232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  310 (409)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  310 (409)
                      .-+.| .+..|.-.|.+..+..+.+...+.  +. ......+..-...|  ++|.+|..|-|++||.-..+-     +. 
T Consensus       529 qtlvGlS~~svFrIDPR~~gNKi~v~esKd--Y~-tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-----Kt-  597 (776)
T COG5167         529 QTLVGLSDYSVFRIDPRARGNKIKVVESKD--YK-TKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-----KT-  597 (776)
T ss_pred             ceEEeecccceEEecccccCCceeeeeehh--cc-ccccccccccccCc--eEEEecCCCceeeehhhcchh-----hh-
Confidence            34456 788887788876665555433222  11 11223344444444  899999999999999543221     11 


Q ss_pred             cccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                                 .+.+-...|..+..+.+|+++++.+...+-+-|++
T Consensus       598 -----------alP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         598 -----------ALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             -----------cCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                       11222457889999999999988887888888875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.92  E-value=0.034  Score=49.78  Aligned_cols=143  Identities=10%  Similarity=0.044  Sum_probs=93.6

Q ss_pred             ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290          220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~  298 (409)
                      ......|-|.+..++.+ .+..+..||-.  ++....        ....+....++|+.+++..++.+-..+.+.+||+.
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le--------~n~tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILE--------LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhh--cceecc--------cCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            33456678887778887 88889999976  433322        11234456788988886667777788999999998


Q ss_pred             CccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCccccccc
Q 015290          299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (409)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  377 (409)
                      +...     ..++..          .  ...-.-+.|++.+..++.|.. +.+.||+..+ .+.......|...+     
T Consensus       106 ~eyt-----qqLE~g----------g--~~s~sll~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRg-----  162 (615)
T KOG2247|consen  106 SEYT-----QQLESG----------G--TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRG-----  162 (615)
T ss_pred             hhhH-----HHHhcc----------C--cchHHHHhhccCCccccccccccceEEEeccc-hhhhhhhcccccce-----
Confidence            7532     222220          0  112222789998888998875 9999999876 44444443355543     


Q ss_pred             ccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          378 LYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       378 ~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                                ++.+|.+.+. .+.++.|.
T Consensus       163 ----------tq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  163 ----------TQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             ----------eEEEecccce-eeecCcHH
Confidence                      5899998875 44555554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.39  E-value=9.9  Score=33.76  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=21.7

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFE   60 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~   60 (409)
                      .-++|+|.|||++|++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            3579999999987664 5699999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=91.38  E-value=5.1  Score=38.49  Aligned_cols=23  Identities=0%  Similarity=-0.025  Sum_probs=17.6

Q ss_pred             CCCCEEEEEeCCC--eEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSRG--FVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~dg--~i~iwd~~~~~  301 (409)
                      ++ ++.+.|+.++  .+-.||..+++
T Consensus       512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DN-TIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CC-EEEEEeeecceeehhhcCccccc
Confidence            45 8889999888  67778877754

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.10  E-value=7.2  Score=31.64  Aligned_cols=118  Identities=12%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             CeEEEe-cCCeEEEEEccCC-CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---C---eEEEE-eCCCcc
Q 015290          231 ETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---G---FVRLV-DMRQSA  301 (409)
Q Consensus       231 ~~l~~~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g---~i~iw-d~~~~~  301 (409)
                      +.|+.+ ....|.+|++... .+.+..       +.. -+.|..+.++..| +++++--.+   .   .+|+| +.+..+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~-------F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCT-------FST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEE-------Ecc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            556555 7888999999822 223333       222 2678999999999 999986432   2   56665 333321


Q ss_pred             ccccccc-cccccccccCCccccc--------ccccceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290          302 LCDHSAR-ILRDAAESHGSKSFFT--------EIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       302 ~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~  357 (409)
                      ......+ .+.+|.-.+.......        .-..++.+++-.|-.--|+.|+++.+.||.+..
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~  164 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY  164 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence            1111111 1112111111111110        123467778888866567777779999998863

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.59  E-value=0.36  Score=46.87  Aligned_cols=81  Identities=16%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             cEEEEEECC---CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           34 IVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        34 ~v~~v~~~~---~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+.-|.|.|   +.-++..+..+++|++........                            ..+++|.....-..-+
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------------------~l~rsHs~~~~d~a~~  233 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------------------SLFRSHSQRVTDMAFF  233 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH----------------------------HHHHhcCCCcccHHHH
Confidence            334455555   667777888889999887765431                            2245565210000000


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~  145 (409)
                      +  ..+.-|+=. ||||+.|+.++.||.++.|.+.
T Consensus       234 ~--~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  234 A--EGVLKLASL-SPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             h--hchhhheee-CCCCcEEEEeecCCccceeeee
Confidence            0  112222212 7899999999999999999764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.45  E-value=1.8  Score=24.31  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=25.0

Q ss_pred             cCCCEEEEee-c-CeEEEEEccCCCcceEEEecccCc
Q 015290          337 NDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       337 ~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      |++++|.++. . +.|.++|..+ ++.+..+.....+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P   36 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP   36 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence            5788777764 3 9999999975 7777777765444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.41  E-value=9.5  Score=31.86  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (409)
Q Consensus        44 ~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (409)
                      ..+++.|+..+.+.--|.+++...                         .-+.+.               .+|.+-+.  
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~-------------------------We~ilg---------------~RiE~sa~--   60 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI-------------------------WEAILG---------------VRIECSAI--   60 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE-------------------------eehhhC---------------ceeeeeeE--
Confidence            467788888888888888877641                         001111               34444444  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceee
Q 015290          124 APNGSMFILSTNDKTIKLWKVRDQKVK  150 (409)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~  150 (409)
                       --|+.++.|...|.+++.+.++|...
T Consensus        61 -vvgdfVV~GCy~g~lYfl~~~tGs~~   86 (354)
T KOG4649|consen   61 -VVGDFVVLGCYSGGLYFLCVKTGSQI   86 (354)
T ss_pred             -EECCEEEEEEccCcEEEEEecchhhe
Confidence             24668999999999999999988543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.15  E-value=13  Score=33.78  Aligned_cols=35  Identities=9%  Similarity=-0.106  Sum_probs=21.1

Q ss_pred             ccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCce
Q 015290          218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC  252 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~  252 (409)
                      ..-|+.+.+|.|.++|..+  ..|.|+.||+.....+
T Consensus       311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            3567899999999999876  8999999999854433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.13  E-value=16  Score=33.93  Aligned_cols=33  Identities=9%  Similarity=0.183  Sum_probs=25.3

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~   64 (409)
                      -+.-+.|+|.|||++|++--..|.|++++-.++
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            356789999999987776654699999875543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=90.06  E-value=13  Score=33.01  Aligned_cols=119  Identities=9%  Similarity=0.004  Sum_probs=67.2

Q ss_pred             ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      .-...++++.+.++++.++.+..|.+.+=... .+.....+..+   ...-...+.++.+.|++ ..+++ +.+|.+. .
T Consensus       212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~~~-G~~G~v~-~  284 (334)
T PRK13684        212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIWAG-GGNGTLL-V  284 (334)
T ss_pred             CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEEEE-cCCCeEE-E
Confidence            34456788999999988888876776532222 33332221100   01112357889999987 65554 4566543 3


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  355 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~  355 (409)
                      ....++       .|.. ...+      ..-......+.|..+++.+++|..|.|--|+-
T Consensus       285 S~d~G~-------tW~~-~~~~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        285 SKDGGK-------TWEK-DPVG------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             eCCCCC-------CCeE-CCcC------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            333332       2221 0000      00013577788888888888888898887764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.92  E-value=21  Score=35.03  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=68.0

Q ss_pred             eeEEEeC--CCCCeEEEe-cCCeEEEEEccC-------C---Cce-eeeeecCCCcCcCccCceEEEEEe--CCCCCEEE
Q 015290          221 INSISNN--SDCETFVSA-DDLRINLWNLEI-------S---DQC-FNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLA  284 (409)
Q Consensus       221 v~~l~~~--~~~~~l~~~-~d~~i~lwd~~~-------~---~~~-~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~  284 (409)
                      |+.|...  -..+.|+.+ +||.|.+|.++.       .   ... .....+++.-...-...+++++++  ... +++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEE
Confidence            4444443  245677778 999999997731       0   000 000111221112234568899998  666 8888


Q ss_pred             EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-----C-EEEEeec-CeEEEEEc
Q 015290          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRDY-MNLKLWDI  355 (409)
Q Consensus       285 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-----~-~l~sg~~-~~v~iwd~  355 (409)
                      .++....|.||-......     +.... .+        ..|...|-+++|-++.     . +|++++- |.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~-----r~~~~-~s--------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDE-----RFYHV-PS--------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEecccc-----ccccc-cc--------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888886544211     10000 00        0134578888887653     2 5555553 88888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.80  E-value=2  Score=35.45  Aligned_cols=72  Identities=14%  Similarity=0.125  Sum_probs=46.9

Q ss_pred             eCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc-------CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          226 NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       226 ~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      +..++++|++- .+|.+++||+...+..+..+.+.+. +.       .....|..+.++.+| .-+++-+ +|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence            34567788777 9999999999943322222111110 11       355678999999988 7666655 467888887


Q ss_pred             CCc
Q 015290          298 RQS  300 (409)
Q Consensus       298 ~~~  300 (409)
                      .-+
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=7.3  Score=35.99  Aligned_cols=86  Identities=10%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC----ccccccccccccccccccCCccccccc-ccceeeeEeccCC----
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ----SALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDG----  339 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g----  339 (409)
                      .|..+..++.| ..++-.+.+|.+.++=.+.    +...+.. .+..+.. .+.....|... .-.+..++|+|+.    
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-~~v~CRt-~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGK-STVNCRT-TPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCC-ceEEEEe-ecccceeeccCCceeeeeccccCCccCCc
Confidence            46778889999 7777778888655432111    1000000 0111100 01111122211 2256788999975    


Q ss_pred             CEEEEeecCeEEEEEccC
Q 015290          340 QHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       340 ~~l~sg~~~~v~iwd~~~  357 (409)
                      .+++-.+|+.+|+||+..
T Consensus       182 hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             eEEEEecCcEEEEEecCC
Confidence            345556789999999975

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.56  E-value=13  Score=32.30  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=74.5

Q ss_pred             ccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290          216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i  294 (409)
                      .-.+.+..+..+++|++++++ ......-||-...  .....      -..-...|.++.|.|++ .+.+.+ ..|.|+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~------~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~  211 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPH------NRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQF  211 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEE------E--SSS-EEEEEE-TTS--EEEEE-TTTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEE------ccCccceehhceecCCC-CEEEEe-CCcEEEE
Confidence            444668888889999999999 4444556776511  11111      12234689999999998 665644 8888887


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccc
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK  374 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~  374 (409)
                      =+.....      ..|.. ...+..     .-.-.+..++|.++++..|+|+.|.+. ...+ .++.-+..+........
T Consensus       212 s~~~~~~------~~w~~-~~~~~~-----~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~D-gGktW~~~~~~~~~~~n  277 (302)
T PF14870_consen  212 SDDPDDG------ETWSE-PIIPIK-----TNGYGILDLAYRPPNEIWAVGGSGTLL-VSTD-GGKTWQKDRVGENVPSN  277 (302)
T ss_dssp             EE-TTEE------EEE----B-TTS-----S--S-EEEEEESSSS-EEEEESTT-EE-EESS-TTSS-EE-GGGTTSSS-
T ss_pred             ccCCCCc------ccccc-ccCCcc-----cCceeeEEEEecCCCCEEEEeCCccEE-EeCC-CCccceECccccCCCCc
Confidence            7622211      22222 001100     002358899999999998888777444 3333 35555555432221110


Q ss_pred             cccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          375 LCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +            ..+.|.++.+-++.|.
T Consensus       278 ~------------~~i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  278 L------------YRIVFVNPDKGFVLGQ  294 (302)
T ss_dssp             --------------EEEEEETTEEEEE-S
T ss_pred             e------------EEEEEcCCCceEEECC
Confidence            1            4788876665555543

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.72  E-value=28  Score=34.96  Aligned_cols=80  Identities=6%  Similarity=-0.079  Sum_probs=46.5

Q ss_pred             cceeeeEeccCCCEEEEe-ecCeEEEEEccCCCcceEEE-e--cccCccccc-ccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF-K--IHEHLRPKL-CDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      ..|.+++...-+.+++.. .||+|.++|..+ -+.+... .  .....+... ..-++-.++..+..++|||.+..++.-
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            567777777777777766 579999999865 4433333 1  011111111 111111122123469999999999988


Q ss_pred             ccCCCC
Q 015290          403 SYRRDN  408 (409)
Q Consensus       403 s~dg~i  408 (409)
                      ..||.+
T Consensus       339 ~~~~~~  344 (753)
T PF11635_consen  339 DEDGKT  344 (753)
T ss_pred             ecCCCc
Confidence            888763

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.71  E-value=17  Score=32.27  Aligned_cols=170  Identities=11%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             cceeEEEeCCC-CCeEEEecCCe------EEEEEccCCC---ceeee---eecCCC---cCcCccCceEEEEEeCCCCCE
Q 015290          219 FNINSISNNSD-CETFVSADDLR------INLWNLEISD---QCFNI---VDMKPS---NMDDLTEVITSAEFHPIYCNL  282 (409)
Q Consensus       219 ~~v~~l~~~~~-~~~l~~~~d~~------i~lwd~~~~~---~~~~~---~~~~~~---~~~~~~~~v~~~~~~p~~~~~  282 (409)
                      +.+..+.+.++ +.+++.+++|.      +..+++....   ..+..   ..++..   .+..-..-..+|++.++| .+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence            45678888854 55555556666      6555555211   11111   111100   011111134578887777 88


Q ss_pred             EEEEeCC------CeEEEEeCCCccccccccccccccc-cccCCc-ccccccccceeeeEeccCCCEEEEee------cC
Q 015290          283 LAYSSSR------GFVRLVDMRQSALCDHSARILRDAA-ESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------YM  348 (409)
Q Consensus       283 l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~sg~------~~  348 (409)
                      +++.-.+      ..|..++.. ++..    ..+.... ..+... ..-......+.+++++|||+.|.++.      |+
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence            8877666      788888876 4431    1111100 000000 00111245789999999999555432      21


Q ss_pred             --e-------EEEEEcc--CCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          349 --N-------LKLWDIR--MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       349 --~-------v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                        .       ++|+...  +.+.+...+......+..      ......+..+.+-+++++|+
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEE
Confidence              1       5555544  223334443322221100      00223346889999998765

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.43  E-value=20  Score=32.77  Aligned_cols=148  Identities=9%  Similarity=0.050  Sum_probs=78.8

Q ss_pred             eeEEEeCCCCCeEEEecCCeEE-EEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          221 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      ...+..++++.+++.+..|.+. -||-.  ......+      -......++++.+.+++ .+++++ .+|.+. +....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~-~S~d~  309 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLLT-RGGGLY-VSKGT  309 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEEe-CCceEE-EecCC
Confidence            4456677888888888555443 34433  1111111      12234568899999998 777665 555543 33333


Q ss_pred             ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccccccccc
Q 015290          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (409)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (409)
                      ++...  ...+..-..        ..-...+..+.|.+++..+++|..|.+....-  .++.-...........   +  
T Consensus       310 G~~~~--~~~f~~~~~--------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~---~--  372 (398)
T PLN00033        310 GLTEE--DFDFEEADI--------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA---N--  372 (398)
T ss_pred             CCccc--ccceeeccc--------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc---c--
Confidence            32100  001111000        00013588899999999999998887776642  2555444332111100   0  


Q ss_pred             CCCCccceeeEEEcCCCCeEEEcc
Q 015290          380 NNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       380 ~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                          .   +.+.|.++++.+++|.
T Consensus       373 ----l---y~v~f~~~~~g~~~G~  389 (398)
T PLN00033        373 ----L---YSVKFFDDKKGFVLGN  389 (398)
T ss_pred             ----e---eEEEEcCCCceEEEeC
Confidence                1   4889888777666654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.98  E-value=4  Score=32.20  Aligned_cols=31  Identities=29%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             ceEEEEEeCCC-----CCEEEEEeCCCeEEEEeCCC
Q 015290          269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       269 ~v~~~~~~p~~-----~~~l~s~s~dg~i~iwd~~~  299 (409)
                      .+.+++|||.|     ..+|++...++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999965     25899999999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.80  E-value=22  Score=32.51  Aligned_cols=113  Identities=11%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             cccceeEEEeCCCCCeEEEecCCeEEEEEccCCCc-----eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  291 (409)
                      ....+..+.+.+++..++++.+|.+..= .. .+.     .+...     ........+.++.|.+++ ..+++ +..|.
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~  349 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLTRGGGLYVS-KG-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-EAWAA-GGSGI  349 (398)
T ss_pred             CccceeeeeEcCCCCEEEEeCCceEEEe-cC-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-cEEEE-ECCCc
Confidence            3456788999999998888866765432 22 232     11211     011122458899999887 65555 46676


Q ss_pred             EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (409)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw  353 (409)
                      +.... ..++       .|.. ....      ..-...+..+.|.++++.+++|.+|.|.-|
T Consensus       350 v~~s~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        350 LLRST-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             EEEeC-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            55543 3332       2222 0000      001246789999988999999988877654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.75  E-value=33  Score=34.62  Aligned_cols=102  Identities=9%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             eEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290          232 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (409)
Q Consensus       232 ~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  311 (409)
                      .+++|-+..|++|++. .++.++.       -..+...+..+...-.| ..++.|..-+.+.+.-.+..+-.   .....
T Consensus       841 kllA~In~~vrLye~t-~~~eLr~-------e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~eg~---f~evA  908 (1096)
T KOG1897|consen  841 KLLAGINQSVRLYEWT-TERELRI-------ECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDEGN---FEEVA  908 (1096)
T ss_pred             eEEEecCcEEEEEEcc-ccceehh-------hhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccCCc---eEEee
Confidence            4666666789999998 4544443       34566788888888888 88999988777776554443210   01111


Q ss_pred             ccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                      .           .-+..+++++.+-.+..|+.+-..|.+++-...
T Consensus       909 r-----------D~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  909 R-----------DYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             h-----------hhCccceeeEEEecCceEEeecccccEEEEEec
Confidence            1           112357888888877666655555777766544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.47  E-value=31  Score=33.93  Aligned_cols=76  Identities=9%  Similarity=0.105  Sum_probs=51.2

Q ss_pred             cccceeEEEeC--CCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCC--CC---EEEEEeC
Q 015290          217 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS  288 (409)
Q Consensus       217 ~~~~v~~l~~~--~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~s~s~  288 (409)
                      -...++.++++  ...+++|++ ....|.||-..........  .+   -..+...|-+|+|-++.  +.   .+++++-
T Consensus       162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~--~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI  236 (717)
T PF08728_consen  162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH--VP---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDI  236 (717)
T ss_pred             cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc--cc---ccccccCCCeeEeecCCCCCccceEEEEEec
Confidence            34467899998  778888888 7888888776632111111  00   12255678899997654  12   7888899


Q ss_pred             CCeEEEEeC
Q 015290          289 RGFVRLVDM  297 (409)
Q Consensus       289 dg~i~iwd~  297 (409)
                      .|.+.+|++
T Consensus       237 ~G~v~~~~I  245 (717)
T PF08728_consen  237 SGEVWTFKI  245 (717)
T ss_pred             cCcEEEEEE
Confidence            999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.39  E-value=20  Score=34.94  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=43.8

Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  274 (409)
                      .|+++++..    +.+....-.| ..+-.+.|+.+...++...+|++.+|++-  +..+....+.   .......|..+.
T Consensus        65 ~I~If~~sG----~lL~~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~svg---~e~~~~~I~ec~  134 (829)
T KOG2280|consen   65 YIRIFNISG----QLLGRILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSVG---FESQMSDIVECR  134 (829)
T ss_pred             eEEEEeccc----cchHHHHhcC-CCeeeecccCCceEEEEeccceEEEeecc--hhhhcccccc---cccccCceeEEE
Confidence            577777654    4333332233 37788999988776666699999999987  3333321111   122233455555


Q ss_pred             EeCCC
Q 015290          275 FHPIY  279 (409)
Q Consensus       275 ~~p~~  279 (409)
                      +..+|
T Consensus       135 ~f~~G  139 (829)
T KOG2280|consen  135 FFHNG  139 (829)
T ss_pred             EecCc
Confidence            55566

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.06  E-value=17  Score=30.68  Aligned_cols=200  Identities=7%  Similarity=0.041  Sum_probs=100.0

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      .-...+.|  ..+|.++-+.+.-|  .|+.+|+.+++......+...-.  .......+..+....+             
T Consensus        45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~~d~l~qLTW-------------  107 (264)
T PF05096_consen   45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--GEGITILGDKLYQLTW-------------  107 (264)
T ss_dssp             -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEES-------------
T ss_pred             ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--ceeEEEECCEEEEEEe-------------
Confidence            34567788  35777777877766  78999999998766544332110  0000001111111111             


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                      .++...+||.++   .+.+..+  ...+.=..++  .+++.|+.+ ....+.++|.. +-+....+.+..  -...-..+
T Consensus       108 k~~~~f~yd~~t---l~~~~~~--~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~--~g~pv~~L  177 (264)
T PF05096_consen  108 KEGTGFVYDPNT---LKKIGTF--PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTD--NGRPVSNL  177 (264)
T ss_dssp             SSSEEEEEETTT---TEEEEEE--E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EE--TTEE---E
T ss_pred             cCCeEEEEcccc---ceEEEEE--ecCCcceEEE--cCCCEEEEECCccceEEECCc-ccceEEEEEEEE--CCEECCCc
Confidence            255677777765   3344443  1123335666  467778887 78899999987 444444443321  11122456


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc--CCcccccccccceeeeEeccCCC-EEEEee
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQ-HLLSRD  346 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~  346 (409)
                      +.+.|- +| .+.|-.=....|...|..+|+..    ..+....-.+  ...........-.+.+|+.|..+ +++||-
T Consensus       178 NELE~i-~G-~IyANVW~td~I~~Idp~tG~V~----~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  178 NELEYI-NG-KIYANVWQTDRIVRIDPETGKVV----GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEE-TT-EEEEEETTSSEEEEEETTT-BEE----EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEE----EEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            777776 45 56665556667778888887642    1111100000  00000001135689999998765 555663

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.05  E-value=28  Score=32.97  Aligned_cols=29  Identities=10%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      .+.+|+.++ ++.|+.+|.++ ++.+-.++.
T Consensus       405 ~g~~v~~g~~dG~l~ald~~t-G~~lW~~~~  434 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATT-GKELWKFRT  434 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCC-CceeeEEEC
Confidence            356777776 59999999987 888777664

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=87.02  E-value=29  Score=33.18  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=23.2

Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEeccc
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      .+.+++.++ +|.++.+|.++ ++.+-.++...
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~T-Ge~lw~~~~g~  502 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKT-GEELWKFKTGS  502 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCC-CCEeEEEeCCC
Confidence            345666676 59999999997 88887776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.63  E-value=22  Score=31.47  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=42.0

Q ss_pred             eeEEEeCCCCCeEEEe-cC------CeEEEEEccCCCceeeeeecCCC--------cCcCccCceEEEEEeCCCCCEEEE
Q 015290          221 INSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLAY  285 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~s  285 (409)
                      .-+|++.+++.++++. .+      ..|..++..  +.....+.++..        .-......+.+++++|+| +.|++
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~  163 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFA  163 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEE
Confidence            3467777788888887 77      778777765  555555433321        112245678999999999 75555


Q ss_pred             Ee
Q 015290          286 SS  287 (409)
Q Consensus       286 ~s  287 (409)
                      +.
T Consensus       164 ~~  165 (326)
T PF13449_consen  164 AM  165 (326)
T ss_pred             EE
Confidence            43

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.28  E-value=3.1  Score=23.03  Aligned_cols=29  Identities=10%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEec-C--CeEEEE
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDR-G--GRVILF   59 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~-d--g~i~iw   59 (409)
                      ....-....|+|||++|+-++. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3456788999999998887664 3  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.94  E-value=0.17  Score=45.54  Aligned_cols=98  Identities=10%  Similarity=0.109  Sum_probs=62.0

Q ss_pred             ceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      ....++|..++..++. + ..+.+.+||+. +....+. +.    -..|...  -+.|++.+ ..++.+...|.+.|++.
T Consensus        76 ~aldm~wDkegdvlavlAek~~piylwd~n-~eytqqL-E~----gg~~s~s--ll~wsKg~-~el~ig~~~gn~viynh  146 (615)
T KOG2247|consen   76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVN-SEYTQQL-ES----GGTSSKS--LLAWSKGT-PELVIGNNAGNIVIYNH  146 (615)
T ss_pred             hHhhhhhccccchhhhhhhcCCCeeechhh-hhhHHHH-hc----cCcchHH--HHhhccCC-ccccccccccceEEEec
Confidence            3456778777776665 5 88999999998 3322211 00    1112222  27889988 78888888899999998


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ...+..    -...             .|...++++++.+.+..+.
T Consensus       147 gtsR~i----iv~G-------------kh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  147 GTSRRI----IVMG-------------KHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             cchhhh----hhhc-------------ccccceeEEEecccceeee
Confidence            765421    1111             1456788888888765444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.46  E-value=38  Score=33.10  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      +.+..+..||+.++|+--.+ |.|.+-+.+. .+.+..+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence            46888999999999998765 9888888775 55555555

>PHA03098 kelch-like protein; Provisional

Probab=85.40  E-value=36  Score=32.67  Aligned_cols=23  Identities=4%  Similarity=-0.080  Sum_probs=14.6

Q ss_pred             CCCCEEEEEeCC--------CeEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSR--------GFVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~d--------g~i~iwd~~~~~  301 (409)
                      ++ .+++.|+.+        ..+.+||..+++
T Consensus       437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CC-EEEEECCccCCCCCcccceEEEecCCCCc
Confidence            44 667777643        237888887754

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.16  E-value=39  Score=35.10  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=28.0

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~   64 (409)
                      ......++|+|...++|.|...|.|++|-...-
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccce
Confidence            346678899999999999999999999986643

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.75  E-value=21  Score=37.08  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             cccceeEEEeCCCCCeEEEecCCeEEEEEccC---CC---ceeeeeecC----------CCcCc-CccCceEEEEEeCCC
Q 015290          217 HDFNINSISNNSDCETFVSADDLRINLWNLEI---SD---QCFNIVDMK----------PSNMD-DLTEVITSAEFHPIY  279 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~---~~---~~~~~~~~~----------~~~~~-~~~~~v~~~~~~p~~  279 (409)
                      ....|+|+....+|+.+++|.||  .+|.+..   .+   +..+.++..          ...+. .+.++|..+..+..-
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            35568899988899999999666  4454421   11   000111100          01223 567899999999887


Q ss_pred             CCEEEEEeCCCeEEEEeCCC
Q 015290          280 CNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       280 ~~~l~s~s~dg~i~iwd~~~  299 (409)
                       .++.+-+..|+|.+||+..
T Consensus       255 -~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 -NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -ceeeeeccCceEEEEEccC
Confidence             8999999999999999987

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=83.07  E-value=47  Score=32.18  Aligned_cols=68  Identities=13%  Similarity=0.095  Sum_probs=35.1

Q ss_pred             EEeCCCCCeEEEe-cC------CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe-----
Q 015290          224 ISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-----  291 (409)
Q Consensus       224 l~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-----  291 (409)
                      +++. ++...++| .|      .++..||.. ..+-...-     .+....... +++. -+| .+.+.|+.||.     
T Consensus       328 ~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~W~~~a-----~M~~~R~~~-~v~~-l~g-~iYavGG~dg~~~l~s  397 (571)
T KOG4441|consen  328 VAVL-NGKLYVVGGYDSGSDRLSSVERYDPR-TNQWTPVA-----PMNTKRSDF-GVAV-LDG-KLYAVGGFDGEKSLNS  397 (571)
T ss_pred             EEEE-CCEEEEEccccCCCcccceEEEecCC-CCceeccC-----CccCccccc-eeEE-ECC-EEEEEecccccccccc
Confidence            3443 34566666 65      356778877 33332221     122122211 1121 235 78888988864     


Q ss_pred             EEEEeCCCcc
Q 015290          292 VRLVDMRQSA  301 (409)
Q Consensus       292 i~iwd~~~~~  301 (409)
                      +-.||..+.+
T Consensus       398 vE~YDp~~~~  407 (571)
T KOG4441|consen  398 VECYDPVTNK  407 (571)
T ss_pred             EEEecCCCCc
Confidence            6677877654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.60  E-value=16  Score=33.74  Aligned_cols=49  Identities=10%  Similarity=0.104  Sum_probs=33.8

Q ss_pred             CCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       339 g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      .-|+|.|+. |.|++||.- +.+....+++-...+               ..+..+.+|+++++.+
T Consensus       573 sGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aI---------------k~idvta~Gk~ilaTC  622 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAI---------------KHIDVTANGKHILATC  622 (776)
T ss_pred             CceEEEecCCCceeeehhh-cchhhhcCcccccce---------------eeeEeecCCcEEEEee
Confidence            458999987 999999964 334444555555554               3678888888766544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.09  E-value=5.7  Score=21.89  Aligned_cols=29  Identities=14%  Similarity=0.125  Sum_probs=18.3

Q ss_pred             ccCceEEEEEeCCCCCEEEEEe-CC--CeEEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAYSS-SR--GFVRLV  295 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s-~d--g~i~iw  295 (409)
                      ....-....|+||| +.|+..+ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDG-k~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDG-KYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTS-SEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCC-CEEEEEecCCCCCCcCEE
Confidence            34456789999999 6666554 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=81.02  E-value=34  Score=29.12  Aligned_cols=144  Identities=9%  Similarity=0.008  Sum_probs=81.0

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .....++-.|||..-+++ ..+.|--.|.. +++....       -.+.......+...||| ..-++-+.. .|.-.|-
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~-tGev~~y-------pLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dp  131 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPA-TGEVETY-------PLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDP  131 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCC-CCceEEE-------ecCCCCCCceEEECCCC-CeeEecCcc-eeEEecC
Confidence            344678888898877887 77777777777 4544332       22334455678888998 444432222 4555666


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccccccc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  377 (409)
                      ++.+.     +.|....         .--...+....|.+.|++-.++..|.---.|..  ...+.++....+.-+    
T Consensus       132 kt~ev-----t~f~lp~---------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--~~~i~vfpaPqG~gp----  191 (353)
T COG4257         132 KTLEV-----TRFPLPL---------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--RNVISVFPAPQGGGP----  191 (353)
T ss_pred             cccce-----EEeeccc---------ccCCCcccceeeCCCccEEEeeccccceecCcc--cCceeeeccCCCCCC----
Confidence            55432     3332200         001356788999999998888743211111221  234444444333221    


Q ss_pred             ccCCCCccceeeEEEcCCCCeEEEc
Q 015290          378 LYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       378 ~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                                ..++-.|||..-.+.
T Consensus       192 ----------yGi~atpdGsvwyas  206 (353)
T COG4257         192 ----------YGICATPDGSVWYAS  206 (353)
T ss_pred             ----------cceEECCCCcEEEEe
Confidence                      478888888765553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.81  E-value=11  Score=36.35  Aligned_cols=74  Identities=11%  Similarity=0.040  Sum_probs=40.4

Q ss_pred             CCCCeEEEe-cCCeEEEEEccC---CCceeeeeecCCC----cCc-----------CccCceEEEEEeC----CCCCEEE
Q 015290          228 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPS----NMD-----------DLTEVITSAEFHP----IYCNLLA  284 (409)
Q Consensus       228 ~~~~~l~~~-~d~~i~lwd~~~---~~~~~~~~~~~~~----~~~-----------~~~~~v~~~~~~p----~~~~~l~  284 (409)
                      ++...++.+ .||.+.......   .+...........    .+.           .......++++++    +. .+++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence            456677777 888888777663   2222222111110    000           0123455666666    44 8999


Q ss_pred             EEeCCCeEEEEeCCCccc
Q 015290          285 YSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       285 s~s~dg~i~iwd~~~~~~  302 (409)
                      +.+.|+.+|+||+.+++.
T Consensus       235 tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEETTSEEEEEETTTTCE
T ss_pred             EEeCCCeEEEEECCCCeE
Confidence            999999999999999874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.24  E-value=22  Score=26.49  Aligned_cols=80  Identities=15%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      .-.|.....-|++++..|.|.|++.......                              ..+  .-..+.-|.++..|
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~------------------------------~~~--~~~~i~~LNin~~i   50 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQR------------------------------TGR--QDSDISFLNINQEI   50 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccc------------------------------ccc--ccCceeEEECCCce
Confidence            3457666778999999999999997654320                              000  01124445555788


Q ss_pred             EEEEEEe---cCCCCEEEEEeCCCeEEEEEcCCcee
Q 015290          117 NRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKV  149 (409)
Q Consensus       117 ~~l~~~~---s~~~~~l~s~~~d~~i~iwd~~~~~~  149 (409)
                      ++|+--+   +.+...|+.|+. ..+..||+.+..-
T Consensus        51 talaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d   85 (136)
T PF14781_consen   51 TALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD   85 (136)
T ss_pred             EEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch
Confidence            8886543   233456666665 5688999987643

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=80.05  E-value=39  Score=29.27  Aligned_cols=28  Identities=11%  Similarity=0.264  Sum_probs=23.6

Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEecc
Q 015290           35 VSAIEFDKTGDYLAVGDRGGRVILFETV   62 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~dg~i~iw~~~   62 (409)
                      -+-|+|+|.+.+-++....+...+||..
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGN   52 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCC
Confidence            4689999998777777778899999987

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		3e-92

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  335 bits (859), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 176/393 (44%), Positives = 249/393 (63%), Gaps = 40/393 (10%)
Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWK        I E D  P    E   L E++    +  P+      +   
Sbjct: 112 LSTNDKTIKLWK--------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQ 251
             M          V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
            FNIVD+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371
           +  E   ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+L
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329
Query: 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           R KLC LY ND IFDKFEC  +G      TGSY
Sbjct: 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.41
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.41
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.32
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.32
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.31
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.97
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.76
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.69
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.61
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.6
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.52
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.52
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.29
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.18
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.17
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.11
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.09
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.08
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.06
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.94
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.89
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.65
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.48
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.47
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.46
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.44
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.35
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.31
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.28
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.22
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.14
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.06
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.99
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.88
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.87
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.73
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.46
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.45
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.4
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.1
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.76
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.36
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.32
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.46
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.2
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	89.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.51
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.01
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.39
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.08
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.11
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.84
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.9
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.69

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-43  Score=308.10  Aligned_cols=280  Identities=17%  Similarity=0.232  Sum_probs=232.7

Q ss_pred             ccCCCcEEEEEECCC----CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~----~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .+|.+.|++++|+|+    +++||+|+.|++|+||++.+...                         .....+.+|.   
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~---   80 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ---   80 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS---
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC---
Confidence            359999999999984    67999999999999999976542                         2345688999   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                               ..|.+++|  ++++.++++++.|++|++||+.+++........             ......+.+++++.+
T Consensus        81 ---------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~-------------~~~~~~~~~spdg~~  136 (321)
T 3ow8_A           81 ---------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-------------PVDAWTLAFSPDSQY  136 (321)
T ss_dssp             ---------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-------------TTCCCCEEECTTSSE
T ss_pred             ---------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC-------------CccEEEEEECCCCCE
Confidence                     89999999  789999999999999999999988766554322             122334555677777


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      ++.+..  ++.+++|+++..   +....+ ..|...|.+++|+|++++|++| .|+.|++||++ .++.+..       +
T Consensus       137 l~~g~~--dg~v~i~~~~~~---~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~-------~  202 (321)
T 3ow8_A          137 LATGTH--VGKVNIFGVESG---KKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHT-------L  202 (321)
T ss_dssp             EEEECT--TSEEEEEETTTC---SEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------E
T ss_pred             EEEEcC--CCcEEEEEcCCC---ceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEE-------E
Confidence            777765  899999999864   333333 5788889999999999999999 99999999998 6776666       6


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+|...|.+++|+|++ ++|++|+.|+.|++||++.++.    ...             +.+|...|.+++|+|++++|+
T Consensus       203 ~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~----~~~-------------~~~h~~~v~~~~~sp~~~~l~  264 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGT-------------LSGHASWVLNVAFCPDDTHFV  264 (321)
T ss_dssp             CCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCE----EEE-------------ECCCSSCEEEEEECTTSSEEE
T ss_pred             cccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcce----eEE-------------EcCCCCceEEEEECCCCCEEE
Confidence            7899999999999999 9999999999999999987653    122             344578899999999999999


Q ss_pred             Eeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       344 sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +++. +.|++||+.+ ++++..+.+|...+               ++++|+|+|++|++++.||+|
T Consensus       265 s~s~D~~v~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          265 SSSSDKSVKVWDVGT-RTCVHTFFDHQDQV---------------WGVKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             EEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCCE
T ss_pred             EEeCCCcEEEEeCCC-CEEEEEEcCCCCcE---------------EEEEECCCCCEEEEEeCCCeE
Confidence            9974 9999999986 88999999998876               699999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-42  Score=307.38  Aligned_cols=279  Identities=17%  Similarity=0.247  Sum_probs=225.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||.|+|||..++.                           .+..+..|.       
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---------------------------~~~~~~~~~-------   97 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---------------------------KVHAIPLRS-------   97 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---------------------------EEEEEECSS-------
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------cceEeecCC-------
Confidence            3599999999999999999999999999999998766                           356678888       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee----eeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                           ..|.+++|  +|++++|++++.|+.|++|++.++..    ...... ...            .+..+.+.+++. 
T Consensus        98 -----~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~-h~~------------~v~~~~~~~~~~-  156 (340)
T 1got_B           98 -----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTG------------YLSCCRFLDDNQ-  156 (340)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC-CSS------------CEEEEEEEETTE-
T ss_pred             -----ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC-CCc------------cEEEEEECCCCc-
Confidence                 89999999  79999999999999999999976532    111111 111            122222222223 


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      +++++.  |+.|++||+++   ++++..+ .+|...|.+++|+|+++++++| .|+.|++||++ .+.....       +
T Consensus       157 l~s~s~--d~~i~~wd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~-~~~~~~~-------~  222 (340)
T 1got_B          157 IVTSSG--DTTCALWDIET---GQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------F  222 (340)
T ss_dssp             EEEEET--TSCEEEEETTT---TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEE-------E
T ss_pred             EEEEEC--CCcEEEEECCC---CcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCeeEEE-------E
Confidence            333333  89999999976   4556665 7899999999999999999999 99999999998 6666665       6


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+|...|++++|+|++ ++|++|+.||.|++||+++++..    ..+..           ..+...|.+++|+|+|++|+
T Consensus       223 ~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~----~~~~~-----------~~~~~~v~~~~~s~~g~~l~  286 (340)
T 1got_B          223 TGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEE
T ss_pred             cCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEE----EEEcc-----------CCcccceEEEEECCCCCEEE
Confidence            7899999999999999 99999999999999999886531    22211           11234799999999999999


Q ss_pred             Eeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       344 sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +|++ +.|++||+.+ ++.+..+.+|...+               .+++|+|||.+|++|+.||+|
T Consensus       287 ~g~~d~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          287 AGYDDFNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCE
T ss_pred             EECCCCeEEEEEccc-CcEeeEeecCCCcE---------------EEEEEcCCCCEEEEEcCCccE
Confidence            9975 9999999986 78889999999876               699999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5e-43  Score=318.98  Aligned_cols=279  Identities=16%  Similarity=0.264  Sum_probs=237.3

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.++|++++|+|++.+||+|+.||+|+|||+.+++.                           ...+.+|.      
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------------~~~l~~h~------  150 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHT------  150 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCS------
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEeccC------
Confidence            346999999999999999999999999999999998763                           56789999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|.+++|  +|++++|++|+.|++|++||+.+++.......+             ...+..+.+++++.++++
T Consensus       151 ------~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-------------~~~V~~v~~~p~~~~l~s  209 (410)
T 1vyh_C          151 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRTMHGH-------------DHNVSSVSIMPNGDHIVS  209 (410)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEECCCCC-------------SSCEEEEEECSSSSEEEE
T ss_pred             ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-------------CCCEEEEEEeCCCCEEEE
Confidence                  89999999  789999999999999999999887765543322             123444555666677777


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  |+.|++||+.+   +.++..+ .+|...|.+++++|+++++++| .|+.|++||+. .+.....       +.+|
T Consensus       210 ~s~--D~~i~~wd~~~---~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~-~~~~~~~-------~~~h  275 (410)
T 1vyh_C          210 ASR--DKTIKMWEVQT---GYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAE-------LREH  275 (410)
T ss_dssp             EET--TSEEEEEETTT---CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCC
T ss_pred             EeC--CCeEEEEECCC---CcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC-CCceeeE-------ecCC
Confidence            665  99999999976   4566666 7899999999999999999999 99999999998 5666655       5789


Q ss_pred             cCceEEEEEeCC--------------------CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          267 TEVITSAEFHPI--------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       267 ~~~v~~~~~~p~--------------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      ...|.+++|+|+                    + .+|++|+.|+.|++||++++..    +..+             .+|
T Consensus       276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~----~~~~-------------~~h  337 (410)
T 1vyh_C          276 RHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMC----LMTL-------------VGH  337 (410)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEE----EEEE-------------ECC
T ss_pred             CceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCce----EEEE-------------ECC
Confidence            999999999996                    4 6899999999999999998753    2222             345


Q ss_pred             ccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ...|.+++|+|+|++|++|++ +.|++||+.. ++++..+.+|...+               ++++|+|++.+|++|+.|
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETT
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcE---------------EEEEEcCCCCEEEEEeCC
Confidence            788999999999999999975 9999999986 88999999998876               699999999999999999


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      |+|
T Consensus       402 ~~i  404 (410)
T 1vyh_C          402 QTV  404 (410)
T ss_dssp             SEE
T ss_pred             CcE
Confidence            986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=318.63  Aligned_cols=359  Identities=48%  Similarity=0.852  Sum_probs=266.5

Q ss_pred             hccccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccC
Q 015290            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (409)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (409)
                      ...+..|++.|.|++  ...+++|.+.|++++|+|+|++||+|+.||.|+||++.+++..                ....
T Consensus         6 ~~~~~~w~~~q~~~~--~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~----------------~~~~   67 (447)
T 3dw8_B            6 GGNDIQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI----------------QSHS   67 (447)
T ss_dssp             --CCCCCEEEECCSC--SSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCC
T ss_pred             CCcceeEEEEEeccc--ccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC----------------Cccc
Confidence            346678999999988  4556778999999999999999999999999999999876521                0011


Q ss_pred             CCceeeeeeecCCCccccccccceeccceEEEEEEecCCC--CEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccc
Q 015290           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (409)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (409)
                      ..++++...+.+|..+|+++..+.+++.|.+++|  +|++  .+|++++.|++|++||+.++....... ....      
T Consensus        68 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~------  138 (447)
T 3dw8_B           68 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY-NLKE------  138 (447)
T ss_dssp             CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC-SCC-------
T ss_pred             ccceeEecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCccee-cccC------
Confidence            2356678889999999999999999999999999  5776  799999999999999998765432110 0000      


Q ss_pred             ccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEE
Q 015290          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN  245 (409)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd  245 (409)
                         ..+......... ...++...      ..-|.    ....+.+.+..+|...|.+++|+|++++|++|.|+.|++||
T Consensus       139 ---~~g~~~~~~~~~-~~~~~~~~------~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd  204 (447)
T 3dw8_B          139 ---EDGRYRDPTTVT-TLRVPVFR------PMDLM----VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWH  204 (447)
T ss_dssp             ----------CCCCC-SCCCCEEE------EEEEE----EEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEE
T ss_pred             ---ccccccCccccc-ceEecccc------chhee----eeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEE
Confidence               000000000000 00000000      00010    11234445557899999999999999999999999999999


Q ss_pred             ccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      ++..+..+..+..++..+.+|...|++++|+|+++++|++|+.||.|++||+++++.+......+..| ..+.....+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  283 (447)
T 3dw8_B          205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSE  283 (447)
T ss_dssp             TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC------CCHHHH
T ss_pred             CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC-CCccccccccc
Confidence            98556666666666666788999999999999976899999999999999999877543334555552 33344455667


Q ss_pred             cccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      |...|.+++|+|+|++|++++++.|++||++..++++..+.+|...+..++..++.++++.++.++|+|++++|++|+.|
T Consensus       284 ~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d  363 (447)
T 3dw8_B          284 IISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN  363 (447)
T ss_dssp             HTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST
T ss_pred             cCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC
Confidence            77899999999999999999779999999986578899999998877666677777888777789999999999999999


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      |.|
T Consensus       364 g~v  366 (447)
T 3dw8_B          364 NFF  366 (447)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            976

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-41  Score=297.38  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=226.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|+|++++||+|+.||.|+|||+.++.                           .+..+.+|.        
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~--------   55 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE--------   55 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC--------
Confidence            389999999999999999999999999999998765                           466788888        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          .+|.+++|  ++++++|++++.|++|++||+.+++.......+             ...+..+.+++++.++++++
T Consensus        56 ----~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~l~sgs  116 (304)
T 2ynn_A           56 ----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-------------PDYIRSIAVHPTKPYVLSGS  116 (304)
T ss_dssp             ----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECSSSSEEEEEE
T ss_pred             ----CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC-------------CCcEEEEEEcCCCCEEEEEC
Confidence                89999999  689999999999999999999988776554322             22344555666777777776


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      .  |+.|++||++...  .+...+ .+|...|.+++|+| ++..|++| .|++|++||++ .......+      ..+|.
T Consensus       117 ~--D~~v~lWd~~~~~--~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~-~~~~~~~~------~~~~~  184 (304)
T 2ynn_A          117 D--DLTVKLWNWENNW--ALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG-QSTPNFTL------TTGQE  184 (304)
T ss_dssp             T--TSCEEEEEGGGTT--EEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT-CSSCSEEE------ECCCT
T ss_pred             C--CCeEEEEECCCCc--chhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC-CCCcccee------ccCCc
Confidence            5  9999999997532  233444 88999999999999 57899999 99999999998 33333222      34566


Q ss_pred             CceEEEEEeC--CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          268 EVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       268 ~~v~~~~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ..+..+.|+|  ++ .+|++|+.|+.|++||+++++.    +..+             .+|...|.+++|+|++++|++|
T Consensus       185 ~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~----~~~~-------------~~h~~~v~~~~~~p~~~~l~s~  246 (304)
T 2ynn_A          185 RGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATL-------------EGHMSNVSFAVFHPTLPIIISG  246 (304)
T ss_dssp             TCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEE----EEEE-------------ECCSSCEEEEEECSSSSEEEEE
T ss_pred             CcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCcc----ceee-------------CCCCCCEEEEEECCCCCEEEEE
Confidence            7899999987  55 7999999999999999988653    2333             4457889999999999999999


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC--eEEEcccCCC
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFATGSYRRD  407 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~s~s~dg~  407 (409)
                      +. +.|++||+.+ ++++..+..|...+               ++++|+|++.  +|++|+.||.
T Consensus       247 s~Dg~i~iWd~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~asg~~~g~  295 (304)
T 2ynn_A          247 SEDGTLKIWNSST-YKVEKTLNVGLERS---------------WCIATHPTGRKNYIASGFDNGF  295 (304)
T ss_dssp             ETTSCEEEEETTT-CCEEEEECCSSSSE---------------EEEEECTTCGGGCEEEEETTEE
T ss_pred             cCCCeEEEEECCC-CceeeeccCCCccE---------------EEEEECCCCCceEEEEecCCce
Confidence            84 9999999986 88899998887765               6999999875  6899998875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-41  Score=301.17  Aligned_cols=286  Identities=17%  Similarity=0.263  Sum_probs=229.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||+|+|||..++.                           ....+..|.       
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~---------------------------~~~~~~~~~-------  106 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN---------------------------KEHAVTMPC-------  106 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECSS-------
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------cceEEecCC-------
Confidence            4599999999999999999999999999999988765                           345566777       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  +|++.+|++++.|+.+++|++..........       ...........+..+.++++...++++
T Consensus       107 -----~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~t~  172 (354)
T 2pbi_B          107 -----TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAA-------KKKSVAMHTNYLSACSFTNSDMQILTA  172 (354)
T ss_dssp             -----SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGG-------GCEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             -----CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccc-------cceeeeccCCcEEEEEEeCCCCEEEEE
Confidence                 78999999  7999999999999999999986432110000       000001122334455566666667766


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCC--CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      +.  |+.|++||+++   ++++..+ .+|...|.+++++|  ++++|++| .|+.|++||++ .+.++..       +.+
T Consensus       173 s~--D~~v~lwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~-------~~~  238 (354)
T 2pbi_B          173 SG--DGTCALWDVES---GQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQA-------FET  238 (354)
T ss_dssp             ET--TSEEEEEETTT---CCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEE-------ECC
T ss_pred             eC--CCcEEEEeCCC---CeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------ecC
Confidence            65  99999999976   4566666 78999999999987  46899999 99999999999 6666666       678


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |...|++++|+|++ .+|++|+.|++|++||++.++.    ...+..           ..+...+.+++|+|+|++|++|
T Consensus       239 h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~----~~~~~~-----------~~~~~~~~~~~~s~~g~~l~~g  302 (354)
T 2pbi_B          239 HESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADRE----VAIYSK-----------ESIIFGASSVDFSLSGRLLFAG  302 (354)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECC-----------TTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEcC-----------CCcccceeEEEEeCCCCEEEEE
Confidence            99999999999999 9999999999999999988653    122222           0113468899999999999999


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +. +.|++||+.+ ++.+..+.+|...+               ++++|+|||++|++|+.||+|
T Consensus       303 ~~d~~i~vwd~~~-~~~~~~l~~h~~~v---------------~~l~~spdg~~l~sgs~D~~v  350 (354)
T 2pbi_B          303 YNDYTINVWDVLK-GSRVSILFGHENRV---------------STLRVSPDGTAFCSGSWDHTL  350 (354)
T ss_dssp             ETTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSEE
T ss_pred             ECCCcEEEEECCC-CceEEEEECCCCcE---------------EEEEECCCCCEEEEEcCCCCE
Confidence            75 9999999986 78888999998876               699999999999999999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-40  Score=291.20  Aligned_cols=288  Identities=14%  Similarity=0.147  Sum_probs=227.0

Q ss_pred             cCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +|.+.|++++|+|++ ++|++|+.|++|++|++.+....                      ...++..+.+|.       
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~-------   65 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS-------   65 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS-------
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc-------
Confidence            499999999999965 89999999999999998754320                      123467789999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  ++++++|++++.|++|++||+.+++.......+             ...+..+.+++...+++++
T Consensus        66 -----~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~l~s~  125 (319)
T 3frx_A           66 -----HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVGH-------------KSDVMSVDIDKKASMIISG  125 (319)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-------------SSCEEEEEECTTSCEEEEE
T ss_pred             -----ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC-------------CCcEEEEEEcCCCCEEEEE
Confidence                 89999999  799999999999999999999998776554322             2234445556667777777


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC------CCeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      +.  |+.|++||++.    +++..+ .+|...|.+++++|.      +..++++ .|+.|++||++ .......      
T Consensus       126 s~--D~~i~vwd~~~----~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~------  191 (319)
T 3frx_A          126 SR--DKTIKVWTIKG----QCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEAD------  191 (319)
T ss_dssp             ET--TSCEEEEETTS----CEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEE------
T ss_pred             eC--CCeEEEEECCC----CeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhhee------
Confidence            66  99999999964    455555 789999999999985      4478998 99999999998 5555544      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                       +.+|...|.+++|+|++ ++|++++.||.|++||+++++.    +..+..              ...+.+++|+|++.+
T Consensus       192 -~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~sp~~~~  251 (319)
T 3frx_A          192 -FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA----MYTLSA--------------QDEVFSLAFSPNRYW  251 (319)
T ss_dssp             -ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEEC--------------CSCEEEEEECSSSSE
T ss_pred             -ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecC--------------CCcEEEEEEcCCCCE
Confidence             67899999999999999 9999999999999999998753    233333              357999999999999


Q ss_pred             EEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          342 LLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       342 l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |++++++.+++|++.. ...+..+..+.....       ......+.+++|+|||++|++|+.||+|
T Consensus       252 la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~i  310 (319)
T 3frx_A          252 LAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNVI  310 (319)
T ss_dssp             EEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCceE
Confidence            9999888899999975 555555543322110       0001123689999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5e-41  Score=302.86  Aligned_cols=297  Identities=18%  Similarity=0.260  Sum_probs=224.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||+|+|||..+++                           ....+.+|.       
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~-------  108 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHC-------  108 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCC-------
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCC-------
Confidence            3599999999999999999999999999999998766                           356788898       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC-Cceeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  187 (409)
                           ..|.+++|  +|++++|++++.|+.|++|++......... ...     ...+....+.+..+.+.+. ...+++
T Consensus       109 -----~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~-~~~-----~~~~~gh~~~v~~~~~~~~~~~~l~s  175 (380)
T 3iz6_a          109 -----PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGN-MPV-----SRVLTGHKGYASSCQYVPDQETRLIT  175 (380)
T ss_dssp             -----TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCS-STT-----CCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred             -----CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCC-ccc-----eeeccCCCcceEEEEEecCCCCEEEE
Confidence                 88999999  799999999999999999999754211000 000     0000111122333333433 334555


Q ss_pred             ccccccceeEEEecCCcccceeee-eeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      ++.  |+.|++||+.+........ .+..+|...|.+++|++ +++++++| .|+.|++||++.....+..       +.
T Consensus       176 ~s~--D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-------~~  246 (380)
T 3iz6_a          176 GSG--DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-------YH  246 (380)
T ss_dssp             ECT--TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-------EC
T ss_pred             ECC--CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-------EC
Confidence            554  9999999998743322211 11257889999999987 78899999 9999999999855555555       67


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|...|++++|+|++ ++|++|+.||+|++||+++++.    ...+..+...      ...+...+.+++|+|+|++|++
T Consensus       247 ~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          247 GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDR------NDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             CCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEE----EEEECCCCSS------SCCSSCSCSEEEECSSSSEEEE
T ss_pred             CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcE----EEEecccccc------cccccCceEEEEECCCCCEEEE
Confidence            899999999999999 9999999999999999998764    2333321100      1112346899999999999999


Q ss_pred             eec-CeEEEEEccCCCcceEEE----ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RDY-MNLKLWDIRMDSTPVATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+. +.|++||+.. ++.+..+    .+|...+               .+++|+|||++|++|+.||+|
T Consensus       316 g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          316 GYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRI---------------SCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             ECTTSCEEEEETTT-CCEEEEECCSCSSCCCCC---------------CEEEECSSSSEEEEECTTSCE
T ss_pred             EECCCCEEEEECCC-CceEEEEecccCCCCCce---------------EEEEECCCCCEEEEeeCCCCE
Confidence            975 9999999975 6776666    4666665               699999999999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7e-41  Score=299.00  Aligned_cols=287  Identities=16%  Similarity=0.243  Sum_probs=213.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEec------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (409)
                      ..|...|++++|+|||++||+|+.      |+.|++|+..++..                       .........+|. 
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------------~~~~~~~~~~~~-   94 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------------NESLCTAGVQTE-   94 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------------------------CGGGCSEEEECS-
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-----------------------ceeEecccCCCC-
Confidence            459999999999999999999997      77899998876542                       111223344566 


Q ss_pred             cccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                                 ..|.+++|  +|++ .+++++.|++|++||+.+++........         .......+..+.+++++
T Consensus        95 -----------~~V~~~~~--s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~---------~~~h~~~V~~v~~spdg  151 (357)
T 4g56_B           95 -----------AGVTDVAW--VSEK-GILVASDSGAVELWEILEKESLLVNKFA---------KYEHDDIVKTLSVFSDG  151 (357)
T ss_dssp             -----------SCEEEEEE--ETTT-EEEEEETTSCEEEC--------CCCCEE---------ECCCSSCEEEEEECSSS
T ss_pred             -----------CCEEEEEE--cCCC-CEEEEECCCEEEEeeccccceeEEEeec---------cCCCCCCEEEEEECCCC
Confidence                       78999999  6777 5667889999999999887654332210         00112334455566777


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      .++++++.  ++.|++||+++   .+++..+ .+|...|++++|+|++. .++++ .|+.|++||++ .++....+    
T Consensus       152 ~~l~sgs~--dg~v~iwd~~~---~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~-~~~~~~~~----  220 (357)
T 4g56_B          152 TQAVSGGK--DFSVKVWDLSQ---KAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRI----  220 (357)
T ss_dssp             SEEEEEET--TSCEEEEETTT---TEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT-SSSCBCBC----
T ss_pred             CEEEEEeC--CCeEEEEECCC---CcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECC-CCceeeee----
Confidence            77777765  89999999976   4566666 78999999999999875 67788 99999999998 44444331    


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-  339 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-  339 (409)
                       ....|...+.+++|+|++..+|++|+.|+.|++||+++++.    ...+             .+|...|++++|+|++ 
T Consensus       221 -~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~-------------~~~~~~v~~l~~sp~~~  282 (357)
T 4g56_B          221 -DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTS-------------AVHSQNITGLAYSYHSS  282 (357)
T ss_dssp             -CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEE-------------CCCSSCEEEEEECSSSS
T ss_pred             -eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEE-------------eccceeEEEEEEcCCCC
Confidence             24567788999999998758999999999999999988653    2333             3456789999999997 


Q ss_pred             CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcccCCCC
Q 015290          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s~dg~i  408 (409)
                      ++||+|+ |++|+|||+++ ++++.. .+|...+               ++++|+| |+++|++|+.||+|
T Consensus       283 ~~lasgs~D~~i~iwd~~~-~~~~~~-~~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          283 PFLASISEDCTVAVLDADF-SEVFRD-LSHRDFV---------------TGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             CCEEEEETTSCEEEECTTS-CEEEEE-CCCSSCE---------------EEEEECSSSTTEEEEEETTSCE
T ss_pred             CEEEEEeCCCEEEEEECCC-CcEeEE-CCCCCCE---------------EEEEEeCCCCCEEEEEcCCCeE
Confidence            6888887 49999999986 666554 4687765               6999999 89999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=294.91  Aligned_cols=300  Identities=16%  Similarity=0.156  Sum_probs=223.3

Q ss_pred             CCC-cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~-~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      |.+ .|.+++|+|+|++||+|+.|++|+|||+.++...                        .......+|.        
T Consensus        14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~--------   61 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ--------   61 (345)
T ss_dssp             STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS--------
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC--------
Confidence            766 9999999999999999999999999999876420                        0112346888        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++|  +|++++|++++.|++|++|++..+.......+.           .....+..+.+++++.++++++
T Consensus        62 ----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-----------~h~~~v~~v~~sp~~~~l~s~s  124 (345)
T 3fm0_A           62 ----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLE-----------GHENEVKSVAWAPSGNLLATCS  124 (345)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-----------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-----------CCCCCceEEEEeCCCCEEEEEE
Confidence                89999999  799999999999999999999876543322211           1123345556677777888777


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  |+.|++||+.......++..+ .+|...|.+++|+|++++|++| .|+.|++||.+ .+.....     ..+.+|..
T Consensus       125 ~--D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~-----~~~~~h~~  195 (345)
T 3fm0_A          125 R--DKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCC-----ATLEGHES  195 (345)
T ss_dssp             T--TSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEE-----EEECCCSS
T ss_pred             C--CCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEE-----EEecCCCC
Confidence            6  999999999876666666666 8899999999999999999999 99999999998 4432211     11678999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc--CCccccc-ccccceeeeEeccCCCEEEEe
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFT-EIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      .|++++|+|++ ++|++++.|++|++||.......    .........+  .....+. .|...|.+++|+|++.+|+++
T Consensus       196 ~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  270 (345)
T 3fm0_A          196 TVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNE----QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA  270 (345)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCT----TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred             ceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCC----ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence            99999999999 99999999999999997543211    0000000000  0001122 267889999999999999998


Q ss_pred             e-cCeEEEEEccCCC---cceEE-----EecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290          346 D-YMNLKLWDIRMDS---TPVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i  408 (409)
                      + |+.|++|+.....   .+...     ..+|...+               .+++|+|++ .+||+|+.||+|
T Consensus       271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v  328 (345)
T 3fm0_A          271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEV  328 (345)
T ss_dssp             ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCE
T ss_pred             eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcE
Confidence            7 5999999986421   11111     23455544               699999998 499999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-39  Score=288.83  Aligned_cols=294  Identities=14%  Similarity=0.116  Sum_probs=219.2

Q ss_pred             cCCCcEEEEEE-----CC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        30 ~h~~~v~~v~~-----~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      +|.+.|++++|     ++ ++++||+|+.|++|+|||+...+..                    .........+.+|.  
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~--   76 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN--   76 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS--
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC--
Confidence            39999999999     77 9999999999999999999765421                    00113456788999  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                                ..|.+++|  +|++.++++++.|++|++||+.+++.......+             ...+..+.+++++.
T Consensus        77 ----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-------------~~~v~~v~~sp~~~  131 (343)
T 2xzm_R           77 ----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-------------QSEVYSVAFSPDNR  131 (343)
T ss_dssp             ----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEEEECC-------------CSCEEEEEECSSTT
T ss_pred             ----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-------------CCcEEEEEECCCCC
Confidence                      89999999  789999999999999999999988765544322             23345556667777


Q ss_pred             eeecccccccceeEEEecCCcccceeeeee--ccccccceeEEEeCCCC----------CeEEEe-cCCeEEEEEccCCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISD  250 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~----------~~l~~~-~d~~i~lwd~~~~~  250 (409)
                      .+++++.  |+.|++||+...    +....  ..+|...|.+++|+|++          .+++++ .|+.|++||..  .
T Consensus       132 ~l~s~~~--d~~i~~wd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~  203 (343)
T 2xzm_R          132 QILSAGA--EREIKLWNILGE----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--F  203 (343)
T ss_dssp             EEEEEET--TSCEEEEESSSC----EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--T
T ss_pred             EEEEEcC--CCEEEEEeccCC----ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--C
Confidence            7777765  999999999742    22111  13788899999999987          689999 99999999954  4


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      .....       +.+|...|.+++|+|++ ++|++|+.||.|++||++.....   ...+..              ...|
T Consensus       204 ~~~~~-------~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~--------------~~~v  258 (343)
T 2xzm_R          204 QIRYT-------FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA--------------GSTI  258 (343)
T ss_dssp             EEEEE-------EECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC--------------SSCE
T ss_pred             ceeEE-------EcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC--------------CCcE
Confidence            44444       57899999999999999 99999999999999999543221   111211              3469


Q ss_pred             eeeEeccCCCEEEEeecCeEEEEEccCCCcceE--EEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          331 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+++|+|+++++++++++.|++||+.+ ++...  .+..+..  ......  ......|.+++|+|+|++|++|+.||+|
T Consensus       259 ~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~--~~~~~~--~~~~~~v~~~~~sp~g~~l~sg~~Dg~v  333 (343)
T 2xzm_R          259 NQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPI--TKAEGQ--KGKNPQCTSLAWNALGKKLFAGFTDGVI  333 (343)
T ss_dssp             EEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSG--GGBTTB--CCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcc--hhhhhh--cCCCCceEEEEECCCCCeEEEecCCceE
Confidence            999999999999988888999999975 44332  3331110  000000  0001123699999999999999999976

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.3e-40  Score=291.63  Aligned_cols=294  Identities=13%  Similarity=0.162  Sum_probs=213.8

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      +..|...|.+++|+|||++|++++ |+++++||.......                           .....+... ...
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~---------------------------~~~~~~~~~-~~~   76 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK---------------------------DPCAAPNEG-FCS   76 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES---------------------------SGGGTTCGG-GCS
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec---------------------------cccccCCcc-eee
Confidence            345778899999999999999887 778888874321100                           000000000 001


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      ....++..|.+++|  ++++ .|++++.||+|+|||+.+++.........         ....+.+..+.+++++.++++
T Consensus        77 ~~~~~~~~v~~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~---------~~H~~~V~~v~~spdg~~l~s  144 (344)
T 4gqb_B           77 AGVQTEAGVADLTW--VGER-GILVASDSGAVELWELDENETLIVSKFCK---------YEHDDIVSTVSVLSSGTQAVS  144 (344)
T ss_dssp             EEEEESSCEEEEEE--ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEE---------ECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeccCCCEEEEEE--eCCC-eEEEEECCCEEEEEeccCCCceeEeeccc---------cCCCCCEEEEEECCCCCEEEE
Confidence            11223378999999  5775 78999999999999999886544332110         011233445556777788887


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ++.  |+.|++||+++   ++++..+ .+|...|.+++|+|++. .|+++ .|++|++||++ .++....+.     ...
T Consensus       145 gs~--d~~i~iwd~~~---~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~-----~~~  212 (344)
T 4gqb_B          145 GSK--DICIKVWDLAQ---QVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQIG-----CSA  212 (344)
T ss_dssp             EET--TSCEEEEETTT---TEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEECC--------
T ss_pred             EeC--CCeEEEEECCC---CcEEEEE-cCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeeee-----cce
Confidence            776  99999999976   5667766 89999999999999985 67888 99999999999 555555421     344


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS  344 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s  344 (409)
                      +...+.+++|+|++.++|++|+.||.|++||+++++.    +..+             .+|...|++++|+|++ ++|++
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~-------------~~h~~~v~~v~fsp~g~~~las  275 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSS-------------AVHSQCVTGLVFSPHSVPFLAS  275 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEE-------------ECCSSCEEEEEECSSSSCCEEE
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEE-------------cCCCCCEEEEEEccCCCeEEEE
Confidence            5667999999997658999999999999999998753    2333             4457899999999998 58899


Q ss_pred             ee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcccCCCC
Q 015290          345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYRRDN  408 (409)
Q Consensus       345 g~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~dg~i  408 (409)
                      |+ |++|+|||+++ ++ +..+.+|...+               ++++|+|+++ +|++||.||+|
T Consensus       276 gs~D~~i~vwd~~~-~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          276 LSEDCSLAVLDSSL-SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             EETTSCEEEECTTC-CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCE
T ss_pred             EeCCCeEEEEECCC-Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeE
Confidence            87 59999999985 54 45678888876               6999999987 56799999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.4e-39  Score=281.06  Aligned_cols=281  Identities=17%  Similarity=0.299  Sum_probs=225.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|+|++++||+|+.||.|++|+..+++                           ....+.+|.        
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~--------   65 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK--------   65 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS--------
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC--------
Confidence            389999999999999999999999999999998765                           456788898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++|  +|++++|++++.|+.|++||+.+++.......+             ...+..+.+++...++++++
T Consensus        66 ----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~  126 (312)
T 4ery_A           66 ----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------SNYVFCCNFNPQSNLIVSGS  126 (312)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECSSSSEEEEEE
T ss_pred             ----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC-------------CCCEEEEEEcCCCCEEEEEe
Confidence                89999999  799999999999999999999988766554322             22334445566667777776


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  ++.|++||+++   .+++..+ ..|...|.+++|+|++++|+++ .|+.|++||++ .++.+..+      ...+..
T Consensus       127 ~--d~~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~~  193 (312)
T 4ery_A          127 F--DESVRIWDVKT---GKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDNP  193 (312)
T ss_dssp             T--TSCEEEEETTT---CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSCC
T ss_pred             C--CCcEEEEECCC---CEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCCC
Confidence            5  89999999976   3455555 7899999999999999999999 99999999998 55555543      345667


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-  347 (409)
                      .+..++|+|++ ++|++++.|+.|++||+++++.    ...+..|...          ...+......+++++|++|+. 
T Consensus       194 ~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~d  258 (312)
T 4ery_A          194 PVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKC----LKTYTGHKNE----------KYCIFANFSVTGGKWIVSGSED  258 (312)
T ss_dssp             CEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEEECSSCCS----------SSCCCEEEECSSSCEEEECCTT
T ss_pred             ceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEEecCCc----------eEEEEEEEEeCCCcEEEEECCC
Confidence            89999999999 9999999999999999998764    2333332110          112222333467889999975 


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc--cCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s--~dg~i  408 (409)
                      +.|++||+.+ ++.+..+.+|...+               .+++|+|++.+|++++  .|++|
T Consensus       259 g~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i  305 (312)
T 4ery_A          259 NLVYIWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTI  305 (312)
T ss_dssp             SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCE
T ss_pred             CEEEEEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccE
Confidence            9999999986 88899999998876               6999999999999987  57765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-39  Score=292.41  Aligned_cols=307  Identities=15%  Similarity=0.241  Sum_probs=223.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc----
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF----  104 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----  104 (409)
                      ++|.+.|.+++|+|||++||+|+ ++.++||++.+++.                           +..+.+|....    
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---------------------------~~~l~~~~~~~~~~~  112 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---------------------------VARLSDDSAANKDPE  112 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---------------------------EEEECC---------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---------------------------EEEecCccccccccc
Confidence            35999999999999999999987 68999999987763                           22333332100    


Q ss_pred             --cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          105 --DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       105 --~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                        ...........|.+++|  +|++++|++++.|++|++||+.+++.......+             ...+..+.+++++
T Consensus       113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~~p~~  177 (393)
T 1erj_A          113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-------------EQDIYSLDYFPSG  177 (393)
T ss_dssp             --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTS
T ss_pred             cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-------------CCCEEEEEEcCCC
Confidence              00000011145999999  799999999999999999999988776554322             1234445556666


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      ..+++++.  |+.+++||+.+   +++...+  .+...+.+++|+| ++++|++| .|+.|++||++ .+..+..+....
T Consensus       178 ~~l~s~s~--d~~v~iwd~~~---~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~  249 (393)
T 1erj_A          178 DKLVSGSG--DRTVRIWDLRT---GQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSEN  249 (393)
T ss_dssp             SEEEEEET--TSEEEEEETTT---TEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC---
T ss_pred             CEEEEecC--CCcEEEEECCC---CeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccc
Confidence            77776665  89999999976   3444443  3567799999999 89999999 99999999998 666655543332


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      ....+|...|++++|+|++ ++|++|+.|+.|++||+++.....    .... .........+.+|...|.+++|+|+++
T Consensus       250 ~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~----~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~  323 (393)
T 1erj_A          250 ESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDE  323 (393)
T ss_dssp             ---CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             cCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcc----cccC-CCCCcceEEEecccCcEEEEEECCCCC
Confidence            3346799999999999999 999999999999999998754210    0000 001111223567888999999999999


Q ss_pred             EEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC------CCCeEEEcccCCCC
Q 015290          341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYRRDN  408 (409)
Q Consensus       341 ~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------dg~~l~s~s~dg~i  408 (409)
                      +|++|+. +.|++||+.+ ++++..+.+|...+               .+++|++      ++.+||+|+.||+|
T Consensus       324 ~l~sgs~D~~v~iwd~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i  382 (393)
T 1erj_A          324 YILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKA  382 (393)
T ss_dssp             EEEEEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EEEEEeCCCeEEEEECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcE
Confidence            9999985 9999999986 88899999998876               5888875      78999999999976

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.4e-38  Score=279.38  Aligned_cols=292  Identities=15%  Similarity=0.127  Sum_probs=222.6

Q ss_pred             ccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+..                      ...+...+.+|.      
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~------   86 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS------   86 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS------
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC------
Confidence            359999999999997 689999999999999999876531                      223566789999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.+++|  +|++++|++++.|+.|++|+..............             .........+....+++
T Consensus        87 ------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s  145 (340)
T 4aow_A           87 ------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-------------KDVLSVAFSSDNRQIVS  145 (340)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------SCEEEEEECTTSSCEEE
T ss_pred             ------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC-------------CceeEEEEeecCcccee
Confidence                  89999999  7999999999999999999998876655433221             12223333444555665


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      ++.  |+.+++||.....   .......+|...+..++|++++  ..++++ .|+.|++||++ .......       +.
T Consensus       146 ~s~--d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~~  212 (340)
T 4aow_A          146 GSR--DKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------HI  212 (340)
T ss_dssp             EET--TSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------EC
T ss_pred             ecC--CCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------ec
Confidence            554  8999999986532   2222236889999999998864  567778 99999999999 6666655       67


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|...|++++|+|++ ++|++|+.||.|++||+++.+.    +..+..              ...+.+++|+|++.++++
T Consensus       213 ~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~~~~~~~~~~  273 (340)
T 4aow_A          213 GHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDG--------------GDIINALCFSPNRYWLCA  273 (340)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEEC--------------SSCEEEEEECSSSSEEEE
T ss_pred             CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecC--------------CceEEeeecCCCCceeec
Confidence            899999999999999 9999999999999999998653    233333              357999999999988888


Q ss_pred             eecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.|+.|++||++. +..+..+..+.....      .......|++++|+|||++|++|+.||+|
T Consensus       274 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          274 ATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLV  330 (340)
T ss_dssp             EETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            7889999999985 666666543221110      00011123799999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.4e-38  Score=300.93  Aligned_cols=297  Identities=15%  Similarity=0.208  Sum_probs=216.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-------CCCc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-------SHEP  102 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~  102 (409)
                      +|.+.|++++|+|||++||+|+.|++|+|||+.+++.                           ...+.       +|. 
T Consensus       188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~---------------------------~~~~~~~~~~~~~h~-  239 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK---------------------------TGVFEDDSLKNVAHS-  239 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEECBCTTSSSCSSS-
T ss_pred             cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE---------------------------eeeeccccccccccC-
Confidence            4999999999999999999999999999999887652                           23332       677 


Q ss_pred             cccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc--cccc----------------
Q 015290          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSSE----------------  164 (409)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~----------------  164 (409)
                                 +.|.+++|  +|++++|++++.|++|++||+.+++............  ...+                
T Consensus       240 -----------~~V~~v~~--spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          240 -----------GSVFGLTW--SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             -----------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             -----------CCEEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence                       89999999  7999999999999999999999887655443211000  0000                


Q ss_pred             ------------cccccccCceeccCCCCCceeecccccccceeEEEecCCcccceee----------------------
Q 015290          165 ------------NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQ----------------------  210 (409)
Q Consensus       165 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------------  210 (409)
                                  ........+..+.+++++.++++++.  |+.|++||+.+.......                      
T Consensus       307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~--D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~  384 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA--EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV  384 (611)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE
T ss_pred             EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEE
Confidence                        00011223344555667777776665  778888887642110000                      


Q ss_pred             ------e--------------------------------------------ee------ccccccceeEEEeCCCCCeEE
Q 015290          211 ------K--------------------------------------------VY------PHAHDFNINSISNNSDCETFV  234 (409)
Q Consensus       211 ------~--------------------------------------------~~------~~~~~~~v~~l~~~~~~~~l~  234 (409)
                            +                                            .+      ...|...+.+++|+|++++|+
T Consensus       385 s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~la  464 (611)
T 1nr0_A          385 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA  464 (611)
T ss_dssp             ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEE
T ss_pred             EcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEE
Confidence                  0                                            00      001345578999999999999


Q ss_pred             Ee-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC-ccccccccccccc
Q 015290          235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRD  312 (409)
Q Consensus       235 ~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~  312 (409)
                      +| .|++|++||+. .+......      ..+|...|++++|+|+| ++|++++.|++|++||+.+ ++..    ..   
T Consensus       465 sgs~D~~v~lwd~~-~~~~~~~~------~~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~~----~~---  529 (611)
T 1nr0_A          465 VGGQDSKVHVYKLS-GASVSEVK------TIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELA----HT---  529 (611)
T ss_dssp             EEETTSEEEEEEEE-TTEEEEEE------EEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEES----CC---
T ss_pred             EeCCCCeEEEEEcc-CCceeeee------ccCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCcee----ee---
Confidence            99 99999999998 43322111      24688999999999999 9999999999999999876 3321    10   


Q ss_pred             cccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcce-EEEecc-cCcccccccccCCCCccceee
Q 015290          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV-ATFKIH-EHLRPKLCDLYNNDSIFDKFE  389 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~v~~  389 (409)
                              ..+.+|...|.+++|+|||++||+|+ |++|++||+....+.+ ..+.+| ...+               .+
T Consensus       530 --------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v---------------~~  586 (611)
T 1nr0_A          530 --------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV---------------NS  586 (611)
T ss_dssp             --------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCE---------------EE
T ss_pred             --------eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCe---------------eE
Confidence                    01233678999999999999999998 5999999998633344 566677 5554               69


Q ss_pred             EEEcCCCCeEEEcccCCCC
Q 015290          390 CSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       390 ~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|+||++ |++++.|++|
T Consensus       587 v~fs~d~~-l~s~~~D~~i  604 (611)
T 1nr0_A          587 VIWLNETT-IVSAGQDSNI  604 (611)
T ss_dssp             EEEEETTE-EEEEETTSCE
T ss_pred             EEEcCCCE-EEEecCCCCE
Confidence            99999998 9999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.7e-38  Score=274.37  Aligned_cols=249  Identities=15%  Similarity=0.213  Sum_probs=193.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|+|++||+|+.|++|+|||+.+...                         +.+..+.+|.       
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------------~~~~~l~gH~-------   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE-------   53 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------------CCCEEECCCS-------
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------------EEEEEEcccc-------
Confidence            45999999999999999999999999999999975421                         2457789999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|.+++|.|..++++|++++.|++|++||+.+++....                                    
T Consensus        54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------   92 (297)
T 2pm7_B           54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------   92 (297)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred             -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence                 899999994222488999999999999999987642211                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCce-eeeeecCCCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMD  264 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~  264 (409)
                                            ..+ .+|...|.+++|+|+  +.+|+++ .|+.|++||++..... ...       +.
T Consensus        93 ----------------------~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~-------~~  142 (297)
T 2pm7_B           93 ----------------------AVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII-------ID  142 (297)
T ss_dssp             ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE-------EE
T ss_pred             ----------------------EEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee-------ee
Confidence                                  111 578899999999997  8899999 9999999999833222 222       57


Q ss_pred             CccCceEEEEEeCCC------------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          265 DLTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      +|...|.+++|+|++            .++|++|+.|+.|++||+++++.......             .+.+|...|.+
T Consensus       143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~-------------~l~~H~~~V~~  209 (297)
T 2pm7_B          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------------TLEGHSDWVRD  209 (297)
T ss_dssp             CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-------------EECCCSSCEEE
T ss_pred             cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-------------EecCCCCceEE
Confidence            899999999999972            16999999999999999987542100011             24567889999


Q ss_pred             eEeccCC---CEEEEee-cCeEEEEEccCCCcc-e-EEE--ecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          333 IKFANDG---QHLLSRD-YMNLKLWDIRMDSTP-V-ATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       333 ~~~s~~g---~~l~sg~-~~~v~iwd~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      ++|+|++   ++||+++ |++|+|||++..... . ..+  ..|...+               .+++|+|+|++||+++.
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG  274 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEET
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE---------------EEEEECCCCCEEEEEcC
Confidence            9999995   8999997 599999999752211 1 222  2333332               69999999999999999


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      ||+|
T Consensus       275 D~~v  278 (297)
T 2pm7_B          275 DNKV  278 (297)
T ss_dssp             TSCE
T ss_pred             CCcE
Confidence            9976

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-37  Score=273.96  Aligned_cols=287  Identities=14%  Similarity=0.146  Sum_probs=210.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cC-CCcccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYL  107 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~  107 (409)
                      +|.+.|++++|+|+  +||+|+.|+.|+|||+..+..                         +....+ .+ |.      
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~------   58 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK------   58 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC------
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc------
Confidence            38999999999987  999999999999999986532                         133344 34 87      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce-------eeeeeccCCCcccccccccccccCceeccCCC
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (409)
                            +.|.+++|  +|++++|++++.|++|++||+....       ......             .....+..+.+++
T Consensus        59 ------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-------------~h~~~V~~v~~sp  117 (330)
T 2hes_X           59 ------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-------------GHENEVKGVAWSN  117 (330)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----------------CEEEEEECT
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-------------CCCCcEEEEEECC
Confidence                  89999999  7899999999999999999986431       111111             1223455566677


Q ss_pred             CCceeecccccccceeEEEecCC-cccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC--ceeeee
Q 015290          181 SFAHGYHLEWTENMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIV  256 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~  256 (409)
                      ++.++++++.  |+.|++||+.. ....+++..+ .+|...|.+++|+|++++|++| .|++|++||.. .+  .++.. 
T Consensus       118 ~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~-~~~~~~~~~-  192 (330)
T 2hes_X          118 DGYYLATCSR--DKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY-DDDWECVAV-  192 (330)
T ss_dssp             TSCEEEEEET--TSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE-TTEEEEEEE-
T ss_pred             CCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC-CCCeeEEEE-
Confidence            7888888776  99999999953 3334556665 8899999999999999999999 99999999987 33  34444 


Q ss_pred             ecCCCcCcCccCceEEEEEeCC--CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccc-ccccceeee
Q 015290          257 DMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDI  333 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~  333 (409)
                            +.+|...|.+++|+|+  + .+|++|+.|++|++||++.+.....  ..+..       ...+. .|...|.++
T Consensus       193 ------~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~~-------~~~~~~~h~~~v~~v  256 (330)
T 2hes_X          193 ------LNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQ--QEWVC-------EAILPDVHKRQVYNV  256 (330)
T ss_dssp             ------ECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSC--EEEEE-------EEECCSCCSSCEEEE
T ss_pred             ------ccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcccc--ceeEE-------eeecccccccceEEE
Confidence                  6889999999999998  5 7899999999999999876421100  00000       01122 267899999


Q ss_pred             EeccCCCEEEEee-cCeEEEEEccCCCc--ceEEE-ecccC-cccccccccCCCCccceeeEEEcC--CCCeEEEcccCC
Q 015290          334 KFANDGQHLLSRD-YMNLKLWDIRMDST--PVATF-KIHEH-LRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYRR  406 (409)
Q Consensus       334 ~~s~~g~~l~sg~-~~~v~iwd~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~s~s~dg  406 (409)
                      +|++++ +|++++ |+.|++||... ++  .+... .+|.. .+               .+++|+|  ++++||+|+.||
T Consensus       257 ~~s~~~-~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v---------------~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          257 AWGFNG-LIASVGADGVLAVYEEVD-GEWKVFAKRALCHGVYEI---------------NVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EECTTS-CEEEEETTSCEEEEEEET-TEEEEEEEESCTTTTSCE---------------EEEEEC-----CCEEEEETTS
T ss_pred             EEcCCC-EEEEEeCCCEEEEEEcCC-CceEEEeccccccccceE---------------EEEEEecCCCceEEEEecCCC
Confidence            999766 677776 59999999874 42  23222 34544 33               6899999  789999999999


Q ss_pred             CC
Q 015290          407 DN  408 (409)
Q Consensus       407 ~i  408 (409)
                      +|
T Consensus       320 ~v  321 (330)
T 2hes_X          320 IV  321 (330)
T ss_dssp             EE
T ss_pred             cE
Confidence            76

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.5e-37  Score=301.97  Aligned_cols=300  Identities=16%  Similarity=0.183  Sum_probs=228.1

Q ss_pred             ccCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .+|.+.|++|+|+|++ ++|++|+.||+|+||++......                      .......+.+|.      
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~------  430 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS------  430 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS------
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC------
Confidence            3599999999999864 79999999999999999765421                      112345688999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.+++|  +|++++|++++.|++|++||+.++........+             ...+..+.+++++..+++
T Consensus       431 ------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~~l~s  489 (694)
T 3dm0_A          431 ------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH-------------TKDVLSVAFSLDNRQIVS  489 (694)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-------------SSCEEEEEECTTSSCEEE
T ss_pred             ------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC-------------CCCEEEEEEeCCCCEEEE
Confidence                  89999999  799999999999999999999988766554322             223445555666677777


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      ++.  |+.|++||............ ..+|...|.+++|+|++  ..++++ .|++|++||++ .......       +.
T Consensus       490 ~s~--D~~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~~  558 (694)
T 3dm0_A          490 ASR--DRTIKLWNTLGECKYTISEG-GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------LA  558 (694)
T ss_dssp             EET--TSCEEEECTTSCEEEEECSS-TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------EC
T ss_pred             EeC--CCEEEEEECCCCcceeeccC-CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------Ec
Confidence            665  99999999865322222111 25788999999999986  578898 99999999998 5666555       67


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+..              ...+.+++|+|++.+|++
T Consensus       559 ~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~sp~~~~l~~  619 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKK----LYSLEA--------------NSVIHALCFSPNRYWLCA  619 (694)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEE----EECCBC--------------SSCEEEEEECSSSSEEEE
T ss_pred             CCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce----EEEecC--------------CCcEEEEEEcCCCcEEEE
Confidence            899999999999999 9999999999999999998763    122222              357999999999999999


Q ss_pred             eecCeEEEEEccCCCcceEEEecccCccccccc----ccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD----LYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++++.|++||+++ ++.+..+..+.........    .........+++++|+|||++|++|+.||+|
T Consensus       620 ~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i  686 (694)
T 3dm0_A          620 ATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI  686 (694)
T ss_dssp             EETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence            9888899999986 7777777654322100000    0011122234789999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.2e-38  Score=299.43  Aligned_cols=299  Identities=11%  Similarity=0.123  Sum_probs=222.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +.+.+.+++|+|||++||+++ ++.|+||++.++..                           ...+.+|.         
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~---------------------------~~~~~~h~---------   59 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------------TEIYTEHS---------   59 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------------CEEECCCS---------
T ss_pred             ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc---------------------------CeEecCCC---------
Confidence            567889999999999999997 56999999986653                           46788999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|++++|  +|+|++|++++.|++|+|||+.+++......+           ....+.+..+.+++++..++.++.
T Consensus        60 ---~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-----------~~~~~~v~~v~fs~dg~~l~~~~~  123 (611)
T 1nr0_A           60 ---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-----------PVFSGPVKDISWDSESKRIAAVGE  123 (611)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-----------ECSSSCEEEEEECTTSCEEEEEEC
T ss_pred             ---CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEee-----------cccCCceEEEEECCCCCEEEEEEC
Confidence               89999999  89999999999999999999975433221111           011234555666777777776654


Q ss_pred             cc--cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ..  .+.+++||..     ++...+ .+|...|.+++|+|++. .|++| .|++|++||.. ..+....       +.+|
T Consensus       124 ~~~~~~~v~~wd~~-----~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~-------l~~H  189 (611)
T 1nr0_A          124 GRERFGHVFLFDTG-----TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FGEH  189 (611)
T ss_dssp             CSSCSEEEEETTTC-----CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------ECCC
T ss_pred             CCCceeEEEEeeCC-----CCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeee-------eccc
Confidence            32  3578888853     334444 78999999999999987 58898 99999999988 5666655       6889


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|++++|+|++ ++|++++.|++|++||+.+++..    ..+..      ......+|...|.+++|+|+|++|++++
T Consensus       190 ~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~----~~~~~------~~~~~~~h~~~V~~v~~spdg~~l~s~s  258 (611)
T 1nr0_A          190 TKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASAS  258 (611)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             cCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEe----eeecc------ccccccccCCCEEEEEECCCCCEEEEEe
Confidence            9999999999999 99999999999999999887531    22211      0001125788999999999999999997


Q ss_pred             -cCeEEEEEccCCCcceEEEecccCcccc---------------------cccc-------cCCCCccceeeEEEcCCCC
Q 015290          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPK---------------------LCDL-------YNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       347 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~---------------------~~~~-------~~~~~~~~v~~~~~spdg~  397 (409)
                       |++|++||+.+ ++++..+..+......                     +.+.       ........|++++|+|||+
T Consensus       259 ~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          259 ADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence             59999999986 6666665432110000                     0000       0001112357999999999


Q ss_pred             eEEEcccCCCC
Q 015290          398 HFATGSYRRDN  408 (409)
Q Consensus       398 ~l~s~s~dg~i  408 (409)
                      +|++++.||+|
T Consensus       338 ~l~s~s~D~~v  348 (611)
T 1nr0_A          338 TLFSADAEGHI  348 (611)
T ss_dssp             EEEEEETTSCE
T ss_pred             EEEEEeCCCcE
Confidence            99999999976

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.1e-37  Score=295.04  Aligned_cols=272  Identities=21%  Similarity=0.294  Sum_probs=223.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|.+++|+|++++|++++.||.|++||..+..                            +..+.+|.       
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------------~~~~~~~~-------  344 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------------LQTLTGHS-------  344 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------------EEEECCCS-------
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------------eEEEeCCC-------
Confidence            3589999999999999999999999999999976543                            45678888       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  +|++++|++++.|+.|++|+.... .......+             ...+..+.+++++.+++.+
T Consensus       345 -----~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~~~~-~~~~~~~~-------------~~~v~~~~~s~dg~~l~~~  403 (577)
T 2ymu_A          345 -----SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGH-------------SSSVRGVAFSPDGQTIASA  403 (577)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTCC-EEEEEECC-------------SSCEEEEEECTTSSCEEEE
T ss_pred             -----CCEEEEEE--CCCCCEEEEEeCCCEEEEEcCCCC-EEEEecCC-------------CCCeEEEEECCCCCEEEEE
Confidence                 89999999  799999999999999999996543 33322211             1223344455666777766


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.|++|+...    +.+..+ .+|...|.+++|+|++++|+++ .|+.|++||..  ++.+..       +.+|.
T Consensus       404 ~~--d~~v~~~~~~~----~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~-------~~~~~  467 (577)
T 2ymu_A          404 SD--DKTVKLWNRNG----QLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQT-------LTGHS  467 (577)
T ss_dssp             ET--TSEEEEECTTC----CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEE-------EECCS
T ss_pred             eC--CCEEEEEeCCC----CEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEE-------EcCCC
Confidence            54  88999999643    455555 7899999999999999999999 99999999976  555554       57899


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|++++|+|++ ++|++++.|+.|++||... +.    .+.+             .+|...|++++|+|+|++|+++++
T Consensus       468 ~~v~~~~~spd~-~~las~~~d~~i~iw~~~~-~~----~~~~-------------~~h~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          468 SSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QL----LQTL-------------TGHSSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             SCEEEEEECTTS-CEEEEEETTSEEEEEETTS-CE----EEEE-------------ECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCEEEEEEcCCC-CEEEEEeCCCEEEEEcCCC-CE----EEEE-------------eCCCCCEEEEEEcCCCCEEEEEEC
Confidence            999999999999 9999999999999999643 22    2333             345789999999999999999975


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +.|+|||..  ++++..+.+|...+               ++++|+|||++|+|++.|++|
T Consensus       529 dg~v~lwd~~--~~~~~~~~~h~~~v---------------~~~~fs~dg~~l~s~~~D~~i  573 (577)
T 2ymu_A          529 DKTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDGQTIASASSDKTV  573 (577)
T ss_dssp             TSEEEEECTT--SCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCE
T ss_pred             cCEEEEEeCC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEE
Confidence             999999964  78999999999876               699999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-37  Score=273.84  Aligned_cols=283  Identities=11%  Similarity=0.102  Sum_probs=229.8

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.+.|++++|+|++++||+|+.||.|++||+.+++                           .+..+.+|.      
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------   74 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------   74 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC------
Confidence            34599999999999999999999999999999998776                           467788998      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.+++|  +|++++|++++.|+.|++||+.+++......  ..            ..+..+.+++++.+++.
T Consensus        75 ------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~------------~~v~~~~~~~~~~~l~~  132 (369)
T 3zwl_B           75 ------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SP------------VPVKRVEFSPCGNYFLA  132 (369)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CS------------SCEEEEEECTTSSEEEE
T ss_pred             ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cC------------CCeEEEEEccCCCEEEE
Confidence                  89999999  7899999999999999999999887766544  11            22334445555566655


Q ss_pred             ccc---cccceeEEEecCCcccce--------eeeeecccccc--ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290          188 LEW---TENMATKIANVGNSVHAR--------CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  253 (409)
Q Consensus       188 ~~~---~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~--~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~  253 (409)
                      +..   ..++.+++|++.......        ....+ ..|..  .+.+++|+|++++|+++ .||.|++||++......
T Consensus       133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  211 (369)
T 3zwl_B          133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV  211 (369)
T ss_dssp             EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE
T ss_pred             ecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            543   123899999997643221        22222 34555  89999999999999999 99999999999435666


Q ss_pred             eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  333 (409)
                      ..       +..|...|.+++|+|++ .+|++++.|+.|++||+++++.    ...+..              ...+..+
T Consensus       212 ~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~--------------~~~~~~~  265 (369)
T 3zwl_B          212 DS-------IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQV----LKKYET--------------DCPLNTA  265 (369)
T ss_dssp             EE-------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEEC--------------SSCEEEE
T ss_pred             EE-------EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCce----eeeecC--------------CCCceeE
Confidence            55       57788999999999999 9999999999999999998754    223322              4679999


Q ss_pred             EeccCCCEEEEeec-C--------------eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCe
Q 015290          334 KFANDGQHLLSRDY-M--------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  398 (409)
Q Consensus       334 ~~s~~g~~l~sg~~-~--------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  398 (409)
                      +|+|+++++++++. +              .+++||+.+ ++.+..+.+|...+               .+++|+|++++
T Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~  329 (369)
T 3zwl_B          266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------NTVAISPQGTS  329 (369)
T ss_dssp             EECSSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSE
T ss_pred             EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcE---------------EEEEECCCCCE
Confidence            99999999999864 5              899999986 88899999998876               69999999999


Q ss_pred             EEEcccCCCC
Q 015290          399 FATGSYRRDN  408 (409)
Q Consensus       399 l~s~s~dg~i  408 (409)
                      |++++.||.|
T Consensus       330 l~s~~~dg~v  339 (369)
T 3zwl_B          330 YASGGEDGFI  339 (369)
T ss_dssp             EEEEETTSEE
T ss_pred             EEEEcCCCeE
Confidence            9999999976

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.2e-38  Score=276.48  Aligned_cols=250  Identities=14%  Similarity=0.180  Sum_probs=192.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|+|++||+|+.|++|+|||+.++..                         ..+..+.+|.       
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~-------   57 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE-------   57 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence            35999999999999999999999999999999986532                         2456789999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|.+++|.|..++++|++++.|++|++||+.++.....                                    
T Consensus        58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------   96 (316)
T 3bg1_A           58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------------------------------   96 (316)
T ss_dssp             -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE------------------------------------
T ss_pred             -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE------------------------------------
Confidence                 899999994212588999999999999999987542211                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                                            ..+ .+|...|.+++|+|+  +.+|++| .|+.|++||++..... ...    ..+.+
T Consensus        97 ----------------------~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-~~~----~~~~~  148 (316)
T 3bg1_A           97 ----------------------HEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-EVK----KINNA  148 (316)
T ss_dssp             ----------------------EEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-EEC----CBTTS
T ss_pred             ----------------------EEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-cee----eeecc
Confidence                                  111 678999999999998  7899999 9999999999833221 110    12578


Q ss_pred             ccCceEEEEEeCCC----------------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          266 LTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       266 ~~~~v~~~~~~p~~----------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      |...+.+++|+|+.                .++|++|+.|+.|++||++..... ....             .+.+|...
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~-------------~l~~h~~~  214 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQ-------------KLEAHSDW  214 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEE-------------CCBCCSSC
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceee-------------ecccCCCc
Confidence            88999999999972                168999999999999998753210 0011             24556789


Q ss_pred             eeeeEeccCC----CEEEEee-cCeEEEEEccCC--C-cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          330 ISDIKFANDG----QHLLSRD-YMNLKLWDIRMD--S-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       330 i~~~~~s~~g----~~l~sg~-~~~v~iwd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      |.+++|+|++    ++|++|+ |++|+|||+...  + .....+..|...+               ++++|+|+|++||+
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las  279 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAV  279 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEE
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEE
Confidence            9999999987    7899997 599999998741  1 1233455565554               69999999999999


Q ss_pred             cccCCCC
Q 015290          402 GSYRRDN  408 (409)
Q Consensus       402 ~s~dg~i  408 (409)
                      ++.||+|
T Consensus       280 ~~~D~~v  286 (316)
T 3bg1_A          280 SGGDNKV  286 (316)
T ss_dssp             EESSSCE
T ss_pred             EcCCCeE
Confidence            9999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-37  Score=283.42  Aligned_cols=295  Identities=12%  Similarity=0.056  Sum_probs=206.0

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .|...|+||+|+| ++++||+|+.||.|+|||+.+++..                         ....+.+|.       
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~-------  164 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG-------  164 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence            4788999999999 5679999999999999999876531                         344567898       


Q ss_pred             cceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          109 SLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                           +.|++|+|  +| ++.+|++++.|++|++||+.++........+..           ...+....+++++.+++.
T Consensus       165 -----~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~  226 (435)
T 4e54_B          165 -----GSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI-----------NIWFCSLDVSASSRMVVT  226 (435)
T ss_dssp             -----CCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC-----------SCCCCCEEEETTTTEEEE
T ss_pred             -----CCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC-----------CccEEEEEECCCCCEEEE
Confidence                 89999999  55 788999999999999999987765544332211           111223334455666776


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      +..  ++.|++||++.    +.+..+ .+|...|.+++|+|+++ ++++| .|+.|++||++ .......+    ....+
T Consensus       227 g~~--dg~i~~wd~~~----~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~-~~~~~~~~----~~~~~  294 (435)
T 4e54_B          227 GDN--VGNVILLNMDG----KELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASF----LYSLP  294 (435)
T ss_dssp             ECS--SSBEEEEESSS----CBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT-TCCSSSCC----SBCCB
T ss_pred             EeC--CCcEeeeccCc----ceeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecc-cccccceE----EEeee
Confidence            665  89999999865    344444 78999999999999986 56778 99999999998 33322211    12467


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC-Ccccc---cccccceeeeEeccCCCE
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG-SKSFF---TEIIASISDIKFANDGQH  341 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~i~~~~~s~~g~~  341 (409)
                      |...|++++|+|++ .+|++++.||.|++||++++...    ..+..|..... ....+   -.....+..+.+++++.+
T Consensus       295 h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  369 (435)
T 4e54_B          295 HRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF  369 (435)
T ss_dssp             CSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred             ccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence            89999999999999 99999999999999999987532    22222111000 00000   001122333344444444


Q ss_pred             EEEe-ec-CeEEEEEccCCCcceEEEe-cccCcccccccccCCCCccceeeE-EEcCCCCeEEEcccCCCC
Q 015290          342 LLSR-DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       342 l~sg-~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~spdg~~l~s~s~dg~i  408 (409)
                      ++++ .+ +.|++||..+ ++.+..+. +|...+               .++ +|+|||++||+|+ |++|
T Consensus       370 ~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i  423 (435)
T 4e54_B          370 KSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHI  423 (435)
T ss_dssp             CCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEE
T ss_pred             EEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcE
Confidence            3333 23 6899999986 77777765 455544               355 7999999999987 5554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-36  Score=272.37  Aligned_cols=250  Identities=13%  Similarity=0.133  Sum_probs=201.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.++|++++|+|++++||+|+.||.|++||+.+++                         ++.+..+.+|.         
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~---------   52 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN---------   52 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence            78999999999999999999999999999998764                         12466788898         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|.+++|  +|++++|++++.|+.|++||+.+++........           .....+..+.+++++.+++.+..
T Consensus        53 ---~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~  116 (372)
T 1k8k_C           53 ---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-----------RINRAARCVRWAPNEKKFAVGSG  116 (372)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-----------CCSSCEEEEEECTTSSEEEEEET
T ss_pred             ---CcccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee-----------cCCCceeEEEECCCCCEEEEEeC
Confidence               89999999  689999999999999999999888754443211           11223444455566667776664


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC-----------------CCce
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQC  252 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~-----------------~~~~  252 (409)
                        ++.+++|+++..........+...|...|.+++|+|++++|+++ .|+.|++||++.                 .+..
T Consensus       117 --d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
T 1k8k_C          117 --SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  194 (372)
T ss_dssp             --TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             --CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence              89999999987654444555547789999999999999999999 999999999641                 2344


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      +..       +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.    ...+.             .|...+.+
T Consensus       195 ~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~-------------~~~~~v~~  249 (372)
T 1k8k_C          195 MFE-------SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLA-------------SETLPLLA  249 (372)
T ss_dssp             EEE-------CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEE-------------CSSCCEEE
T ss_pred             eEe-------cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----eEEEc-------------cCCCCeEE
Confidence            444       56889999999999999 9999999999999999987653    23333             34568999


Q ss_pred             eEeccCCCEEEEeecCeEEEEEccC
Q 015290          333 IKFANDGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       333 ~~~s~~g~~l~sg~~~~v~iwd~~~  357 (409)
                      ++|+|++++|++|.++.|++|++..
T Consensus       250 ~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          250 VTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EEEecCCCEEEEEeCCeEEEEEccC
Confidence            9999999999999779999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.2e-36  Score=285.35  Aligned_cols=272  Identities=20%  Similarity=0.297  Sum_probs=225.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|...|.+++|+|++++|++++.|+.|++|+....                            .+..+.+|.       
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~h~-------  303 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------  303 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------------EEEEECCCS-------
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----------------------------EEEEEecCC-------
Confidence            348899999999999999999999999999996543                            356788998       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  +|+++.|++++.|++|++||...........              ....+..+.+++++..++.+
T Consensus       304 -----~~v~~~~~--~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~--------------~~~~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          304 -----SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQHLQTLTG--------------HSSSVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEECC--------------CSSCEEEEEECTTSSEEEEE
T ss_pred             -----CCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCeeEEEeC--------------CCCCEEEEEECCCCCEEEEE
Confidence                 89999999  7999999999999999999987765543321              11233344556667777766


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.+++|+...    +.+..+ .+|...|.+++|+|++++|+++ .|+.|++||..  ++.+..       +.+|.
T Consensus       363 ~~--dg~v~~~~~~~----~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~-------~~~~~  426 (577)
T 2ymu_A          363 SD--DKTVKLWNRNG----QLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHS  426 (577)
T ss_dssp             ET--TSEEEEEETTC----CEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEE-------EECCS
T ss_pred             eC--CCEEEEEcCCC----CEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------ecCCC
Confidence            64  88999999643    455555 7899999999999999999999 99999999965  555555       57899


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|++++|+|++ ++|++++.|+.|++||.....     ...             +.+|...|.+++|+|++++|+++++
T Consensus       427 ~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~~-----~~~-------------~~~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          427 SSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQL-----LQT-------------LTGHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSEEEEEETTSCE-----EEE-------------EECCSSCEEEEEECTTSCEEEEEET
T ss_pred             CCeEEEEECCCC-CEEEEEcCCCEEEEEECCCCE-----EEE-------------EcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999999999999 999999999999999975422     122             2345778999999999999999975


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +.|++||..  ++++..+.+|...+               ++++|+|||++||+++.||+|
T Consensus       488 d~~i~iw~~~--~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          488 DKTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             TSEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSEE
T ss_pred             CCEEEEEcCC--CCEEEEEeCCCCCE---------------EEEEEcCCCCEEEEEECcCEE
Confidence             999999964  78999999998876               699999999999999999976

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-37  Score=280.71  Aligned_cols=317  Identities=12%  Similarity=0.126  Sum_probs=224.3

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +|.+.|++++|+| ++++||+|+.||+|+|||+.+.+..                     ..++....+ +|.       
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~-------  111 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS-------  111 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS-------
T ss_pred             CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC-------
Confidence            4889999999999 9999999999999999998762210                     000111112 366       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcC---CceeeeeeccCCCcccccccccc--cccCceecc--CCCC
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLL--AEKNFMNEH--NPPS  181 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~  181 (409)
                           ..|.+++|  +|++++|++++.|++|++||+.   .++.......+   .+..+.+.+  .......+.  .+++
T Consensus       112 -----~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          112 -----STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             -----CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccCcccccCceEEEEEEcCC
Confidence                 89999999  6899999999999999999995   44433322211   122222222  222233322  4556


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccc--cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~  258 (409)
                      ..+++.+..  ++.|++||+.+   .+++..+ .+  |...|++++|+|++++|++| .||.|++||++ .+..+..+  
T Consensus       182 ~~~l~~~~~--d~~i~iwd~~~---~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~--  252 (437)
T 3gre_A          182 KSLLVALTN--LSRVIIFDIRT---LERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSW--  252 (437)
T ss_dssp             CEEEEEEET--TSEEEEEETTT---CCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT-TTEEEEEE--
T ss_pred             CCEEEEEeC--CCeEEEEeCCC---CeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC-CccEEEEE--
Confidence            677777765  89999999977   4455555 44  88999999999999999999 99999999999 66666653  


Q ss_pred             CCCcCcCccCceEEEEEeC----CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc-----------ccc
Q 015290          259 KPSNMDDLTEVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SFF  323 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  323 (409)
                          ...|...|.+++|+|    ++ .+|++|+.||.|++||+++++.    ...+..|...+...           ..+
T Consensus       253 ----~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~  323 (437)
T 3gre_A          253 ----SFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHC----QYAFINSDEQPSMEHFLPIEKGLEELNF  323 (437)
T ss_dssp             ----BCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEE----EEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred             ----ecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcE----EEEEEcCCCCCccceeccccccccccee
Confidence                125777899996664    56 7999999999999999998763    23333321111100           013


Q ss_pred             cc--cccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCccccccc-----------------------
Q 015290          324 TE--IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------------------  377 (409)
Q Consensus       324 ~~--~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------------  377 (409)
                      .+  |...|.+++|+ ++++|++|+ |+.|++||+.+ ++....+.+|.........                       
T Consensus       324 ~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (437)
T 3gre_A          324 CGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD  401 (437)
T ss_dssp             CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred             cccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence            33  88899999999 788999997 59999999986 7888888775321110000                       


Q ss_pred             --ccCCCCccceeeEEEcCC--CCeEEEcccCCCC
Q 015290          378 --LYNNDSIFDKFECSVSGD--GLHFATGSYRRDN  408 (409)
Q Consensus       378 --~~~~~~~~~v~~~~~spd--g~~l~s~s~dg~i  408 (409)
                        ..+.+.   |.+++|+++  +.+|++|+.||.|
T Consensus       402 ~~~~h~~~---I~~i~~~~~~~~~~l~s~~~dG~I  433 (437)
T 3gre_A          402 DSLYHHDI---INSISTCEVDETPLLVACDNSGLI  433 (437)
T ss_dssp             -----CCC---EEEEEEEESSSSEEEEEEETTSCE
T ss_pred             cccccccc---eeeEeeeccCCceEEEEEcCCceE
Confidence              012222   479999998  8899999999987

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=264.15  Aligned_cols=242  Identities=14%  Similarity=0.177  Sum_probs=204.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|.+++|++++.++++|+.|+.|++||+.+++                           .+..+..|.       
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~---------------------------~~~~~~~~~-------  122 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK---------------------------QIKSIDAGP-------  122 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCT-------
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence            4599999999999999999999999999999998776                           356677777       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..+.+++|  +|++++|++++.|+.|++|++.+++.......             ....+..+.+++++.+++.+
T Consensus       123 -----~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          123 -----VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-------------RGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             -----TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-------------SSSCEEEEEECTTSSEEEEE
T ss_pred             -----ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-------------CCceEEEEEECCCCCEEEEE
Confidence                 78999999  79999999999999999999998866544332             12234455667777888877


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  |+.|++||+.+   ++++..+ .+|...|.+++|+|++++|++| .|+.|++||++ .......       +.+|.
T Consensus       183 ~~--dg~i~iwd~~~---~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~-~~~~~~~-------~~~h~  248 (321)
T 3ow8_A          183 AI--DGIINIFDIAT---GKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ-HANLAGT-------LSGHA  248 (321)
T ss_dssp             ET--TSCEEEEETTT---TEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred             cC--CCeEEEEECCC---CcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC-CcceeEE-------EcCCC
Confidence            76  89999999976   4556665 7899999999999999999999 99999999998 5665555       67899


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|.+++|+|++ .+|++++.|+.|++||+++++.    +..+             .+|...|.+++|+|+|++|+++++
T Consensus       249 ~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~----~~~~-------------~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          249 SWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTC----VHTF-------------FDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEE-------------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEE----EEEE-------------cCCCCcEEEEEECCCCCEEEEEeC
Confidence            999999999999 9999999999999999988653    2233             345678999999999999999875


Q ss_pred             -CeEEEEEcc
Q 015290          348 -MNLKLWDIR  356 (409)
Q Consensus       348 -~~v~iwd~~  356 (409)
                       +.|++||..
T Consensus       311 d~~i~vwd~p  320 (321)
T 3ow8_A          311 DQEIHIYDCP  320 (321)
T ss_dssp             TCCEEEEECC
T ss_pred             CCeEEEEeCC
Confidence             999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-36  Score=273.38  Aligned_cols=243  Identities=17%  Similarity=0.280  Sum_probs=201.7

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.+.|++++|+|++++||+|+.||+|+|||+.+.+                           ++..+.+|.      
T Consensus       146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~---------------------------~~~~~~~h~------  192 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---------------------------CIRTMHGHD------  192 (410)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---------------------------EEECCCCCS------
T ss_pred             EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------------------eeEEEcCCC------
Confidence            34599999999999999999999999999999998765                           567788999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.+++|  +|++.+|++++.|++|++||+.++........+             ...+.....++++.++++
T Consensus       193 ------~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          193 ------HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-------------REWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             ------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECTTSSEEEE
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-------------CccEEEEEECCCCCEEEE
Confidence                  89999999  789999999999999999999988766554322             122333445566677777


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--------------------CCeEEEe-cCCeEEEEEc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--------------------CETFVSA-DDLRINLWNL  246 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~~~-~d~~i~lwd~  246 (409)
                      ++.  |+.|++||+.+   ..+...+ .+|...|.+++|+|+                    +.+|++| .|+.|++||+
T Consensus       252 ~s~--D~~v~vwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          252 CSN--DQTVRVWVVAT---KECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             EET--TSCEEEEETTT---CCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EcC--CCeEEEEECCC---CceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            765  89999999976   3455555 789999999999996                    6789999 9999999999


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      + .+.++..       +.+|...|++++|+|++ ++|++|+.||.|++||+++++.    ...+             .+|
T Consensus       326 ~-~~~~~~~-------~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~----~~~~-------------~~h  379 (410)
T 1vyh_C          326 S-TGMCLMT-------LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC----MKTL-------------NAH  379 (410)
T ss_dssp             T-TTEEEEE-------EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCC----CEEE-------------ECC
T ss_pred             C-CCceEEE-------EECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCce----EEEE-------------cCC
Confidence            9 6777666       57899999999999999 9999999999999999987653    2333             345


Q ss_pred             ccceeeeEeccCCCEEEEee-cCeEEEEEcc
Q 015290          327 IASISDIKFANDGQHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~  356 (409)
                      ...|++++|+|++.+|++|+ |+.|++|+++
T Consensus       380 ~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            77899999999999999998 5999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=264.80  Aligned_cols=247  Identities=15%  Similarity=0.100  Sum_probs=188.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|...|.+++|+|++ .|++|+.||+|+|||+.+++..                       ......+.+|.        
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~--------  127 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD--------  127 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS--------
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC--------
Confidence            356789999999985 6889999999999999987641                       11223456888        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC-ceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  188 (409)
                          +.|++++|  +|++++|++++.|++|++||+.+++.......+.             ..+..+.+++.. .+++++
T Consensus       128 ----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~-------------~~V~~~~~~~~~~~~l~s~  188 (344)
T 4gqb_B          128 ----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA-------------AQVTCVAASPHKDSVFLSC  188 (344)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-------------SCEEEEEECSSCTTEEEEE
T ss_pred             ----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC-------------CceEEEEecCCCCCceeee
Confidence                89999999  7999999999999999999999988776654322             222333333333 345555


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      +.  |+.|++||+++......+.  ...+...+.+++|+|+ +++|++| .|+.|++||++ .++.+..       +.+|
T Consensus       189 s~--D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-~~~~~~~-------~~~h  256 (344)
T 4gqb_B          189 SE--DNRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK-STSCVLS-------SAVH  256 (344)
T ss_dssp             ET--TSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESC-C--CCEE-------EECC
T ss_pred             cc--ccccccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccCCcEEEEECC-CCcEEEE-------EcCC
Confidence            44  8999999998744332222  1345667899999995 5678888 99999999999 6666665       6889


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEe
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg  345 (409)
                      ...|++++|+|++.++|++|+.|++|++||+++++.     ..+             .+|...|++++|+|+++ +|+++
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~-------------~~H~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRS-------------QAHRDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEE-------------CCCSSCEEEEEECSSSTTEEEEE
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEE-------------cCCCCCEEEEEEeCCCCeEEEEE
Confidence            999999999999856899999999999999988653     112             34678999999999986 56677


Q ss_pred             e-cCeEEEEEccC
Q 015290          346 D-YMNLKLWDIRM  357 (409)
Q Consensus       346 ~-~~~v~iwd~~~  357 (409)
                      + |++|++|++.+
T Consensus       319 s~D~~v~~w~v~~  331 (344)
T 4gqb_B          319 GWDHQVVHHVVPT  331 (344)
T ss_dssp             ETTSCEEEEECCC
T ss_pred             cCCCeEEEEECCC
Confidence            7 69999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-35  Score=261.01  Aligned_cols=280  Identities=16%  Similarity=0.228  Sum_probs=218.5

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee--cCCCcccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFD  105 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~  105 (409)
                      ...|.+.|++++|+|++++|++++ ||.|++|++.++...                        ..+..+  .+|.    
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~------------------------~~~~~~~~~~~~----   97 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------------SPVSQLDCLNRD----   97 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------------SCSEEEECSCTT----
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce------------------------eeeecccccCCC----
Confidence            345899999999999999999999 999999999876531                        112222  2566    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              ..|.+++|  +|++++|++++.|+.|++||+.+++........           .....+....+++++..+
T Consensus        98 --------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l  156 (337)
T 1gxr_A           98 --------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-----------SSAPACYALAISPDSKVC  156 (337)
T ss_dssp             --------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-----------CSSSCEEEEEECTTSSEE
T ss_pred             --------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-----------cCCCceEEEEECCCCCEE
Confidence                    89999999  789999999999999999999887633222111           112223344455566666


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      +.+..  ++.+++||+++   .+.+..+ ..|...+.+++|+|++++|+++ .|+.|++||++ .+..+..+        
T Consensus       157 ~~~~~--dg~v~~~d~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~--------  221 (337)
T 1gxr_A          157 FSCCS--DGNIAVWDLHN---QTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH--------  221 (337)
T ss_dssp             EEEET--TSCEEEEETTT---TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------
T ss_pred             EEEeC--CCcEEEEeCCC---Cceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECC-CCceEeee--------
Confidence            66654  88999999976   3455555 7799999999999999999999 99999999998 56555542        


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      .+...+.+++|+|++ ++|++++.++.|++||+++++.     ..+             ..|...+.+++|+|++++|++
T Consensus       222 ~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-----~~~-------------~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          222 DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQL-------------HLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEE-------------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-----EEE-------------cCCccceeEEEECCCCCEEEE
Confidence            356789999999999 9999999999999999988653     122             234678999999999999999


Q ss_pred             eec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++. +.|++||+.. ++.+... .|...+               .+++|+|++++|++++.||.|
T Consensus       283 ~~~dg~i~~~~~~~-~~~~~~~-~~~~~v---------------~~~~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          283 TGKDNLLNAWRTPY-GASIFQS-KESSSV---------------LSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             EETTSEEEEEETTT-CCEEEEE-ECSSCE---------------EEEEECTTSCEEEEEETTSCE
T ss_pred             ecCCCcEEEEECCC-CeEEEEe-cCCCcE---------------EEEEECCCCCEEEEecCCCeE
Confidence            975 9999999986 6655443 344443               699999999999999999976

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-35  Score=268.02  Aligned_cols=290  Identities=13%  Similarity=0.086  Sum_probs=215.0

Q ss_pred             cCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .|.+.|++++|+|++ ++||+|+.||.|+|||+.+++..                         ....+.+|.       
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~-------  118 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG-------  118 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT-------
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC-------
Confidence            489999999999999 99999999999999999877631                         222234688       


Q ss_pred             cceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          109 SLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                           ..|.+++|  +| ++.+|++++.|+.|++||+.+...........           ....+..+.++++..+++.
T Consensus       119 -----~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~  180 (383)
T 3ei3_B          119 -----DAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS-----------WDYWYCCVDVSVSRQMLAT  180 (383)
T ss_dssp             -----CBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC-----------SSCCEEEEEEETTTTEEEE
T ss_pred             -----CceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC-----------CCCCeEEEEECCCCCEEEE
Confidence                 89999999  67 77899999999999999998755443322111           1122344445566667776


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCC---CceeeeeecCCCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSN  262 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~---~~~~~~~~~~~~~  262 (409)
                      +..  ++.|++||+.    .+++..+ .+|...|.+++|+|+++ +++++ .|+.|++||++..   ...+..       
T Consensus       181 ~~~--d~~i~i~d~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------  246 (383)
T 3ei3_B          181 GDS--TGRLLLLGLD----GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------  246 (383)
T ss_dssp             EET--TSEEEEEETT----SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-------
T ss_pred             ECC--CCCEEEEECC----CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-------
Confidence            665  8999999984    3555655 78999999999999998 88998 9999999999832   334433       


Q ss_pred             CcCccCceEEEEEeC-CCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc----CCcccccccccceeeeEecc
Q 015290          263 MDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEIIASISDIKFAN  337 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~s~  337 (409)
                       .+|...|++++|+| ++ .+|++++.|+.|++||+++++..    ..+..|....    ......-.....+..++|+|
T Consensus       247 -~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~  320 (383)
T 3ei3_B          247 -MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP  320 (383)
T ss_dssp             -EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred             -ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecC
Confidence             25889999999999 98 99999999999999999987642    2232211100    00000000123455677888


Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEeccc--CcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +|++  +|+ |+.|++||+.+ ++++..+.++.  ..+               ..++|+|+|++|++|+ ||.|
T Consensus       321 dg~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i  375 (383)
T 3ei3_B          321 DDQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNI  375 (383)
T ss_dssp             CTTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEE
T ss_pred             Cccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcE
Confidence            8877  555 59999999986 88888888743  332               3669999999999997 8765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-35  Score=259.51  Aligned_cols=244  Identities=16%  Similarity=0.170  Sum_probs=196.4

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                      ...++.+|.            +.|.+++|  +|++++|++++.|++|++||+.++........+.             ..
T Consensus         5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~-------------~~   57 (304)
T 2ynn_A            5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-------------TP   57 (304)
T ss_dssp             CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------SC
T ss_pred             eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC-------------Cc
Confidence            456788898            89999999  7999999999999999999999887665543221             22


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                      +..+.+.+++.++++++.  |+.|++||+++   ++++..+ .+|...|.+++|+|++++|++| .|++|++||++....
T Consensus        58 v~~~~~~~~~~~l~s~s~--d~~i~vwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~  131 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSD--DFRIRVFNYNT---GEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (304)
T ss_dssp             EEEEEEEGGGTEEEEEET--TSEEEEEETTT---CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             EEEEEEeCCCCEEEEECC--CCEEEEEECCC---CcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence            233344455566666665  89999999976   4556665 7899999999999999999999 999999999983334


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                      ....       +.+|...|.+++|+|.++.+|++|+.|+.|++||++.+...    ..+.            .+|...+.
T Consensus       132 ~~~~-------~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~~------------~~~~~~v~  188 (304)
T 2ynn_A          132 LEQT-------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVN  188 (304)
T ss_dssp             EEEE-------ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCEE
T ss_pred             hhhh-------hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----ceec------------cCCcCcEE
Confidence            4444       67899999999999953389999999999999999875431    1111            12345788


Q ss_pred             eeEecc--CCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          332 DIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       332 ~~~~s~--~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+.|+|  ++++|++|+. +.|++||+++ ++++..+.+|...+               .+++|+|++++|++|+.||+|
T Consensus       189 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          189 YVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             EEEECCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCE
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeE
Confidence            888876  7789999975 9999999986 88999999998876               689999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=268.57  Aligned_cols=286  Identities=17%  Similarity=0.176  Sum_probs=219.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|++++|+|++++||+|+.||.|++||. ++.                           .+..+.+|.         
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~---------------------------~~~~~~~~~---------  149 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA---------------------------LLNVLNFHR---------  149 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC---------------------------EEEEECCCC---------
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC---------------------------eeeeccCCC---------
Confidence            6789999999999999999999999999993 332                           456778888         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc--cccccccccccCceeccCCCCCceeecc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                         ..|.+++|  +|++++|++++.|+.|++||+.+++............  +...........+..+.+.++.. ++.+
T Consensus       150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  223 (425)
T 1r5m_A          150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP  223 (425)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEE
T ss_pred             ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE
Confidence               89999999  7899999999999999999999887766554332211  00000000011122222233333 3333


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.+++|++...   +.+..+ ..|...|.+++|+|++++|+++ .|+.|++||++ .+.....       +..|.
T Consensus       224 ~~--~g~i~~~d~~~~---~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------~~~~~  289 (425)
T 1r5m_A          224 GP--KGAIFVYQITEK---TPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-NGNSQNC-------FYGHS  289 (425)
T ss_dssp             CG--GGCEEEEETTCS---SCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-SBSCSEE-------ECCCS
T ss_pred             cC--CCeEEEEEcCCC---ceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCccceE-------ecCCC
Confidence            32  889999999863   444444 6899999999999999999999 99999999998 5555555       56788


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|.+++|+|++  ++++++.|+.|++||+++++.    ...+.             .|...+.+++|+|++++|++++.
T Consensus       290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~----~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL----LALSI-------------VDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE----EEEEE-------------CTTCCEEEEEECTTSSEEEEEET
T ss_pred             ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE----eEecc-------------cCCccEEEEEEcCCCCEEEEEEC
Confidence            999999999987  899999999999999988653    22222             34578999999999999999975


Q ss_pred             -CeEEEEEccCCCc--------------------ceEEEecccC--cccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          348 -MNLKLWDIRMDST--------------------PVATFKIHEH--LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       348 -~~v~iwd~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                       +.|++||++. ++                    ++..+.+|..  .+               .+++|+|++++|++++.
T Consensus       351 dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          351 DGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI---------------FDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             TSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCE---------------EEEEECTTSSEEEEEES
T ss_pred             CCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCce---------------EEEEccCCCceEEEEec
Confidence             9999999986 55                    6777777754  43               69999999999999999


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      ||.|
T Consensus       415 dg~i  418 (425)
T 1r5m_A          415 LQEG  418 (425)
T ss_dssp             SSCC
T ss_pred             CceE
Confidence            9987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-36  Score=273.35  Aligned_cols=317  Identities=11%  Similarity=0.071  Sum_probs=223.5

Q ss_pred             ccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCc
Q 015290           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (409)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (409)
                      -..|.+...-.. .......|...|++++|+|++++||+|+.||.|++|++.+...                       .
T Consensus        47 v~iw~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~  102 (416)
T 2pm9_A           47 LELWSLLAADSE-KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------A  102 (416)
T ss_dssp             CEEEESSSGGGC-SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------C
T ss_pred             EEEEEccCCCCC-cEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------c
Confidence            345665432111 2344556899999999999999999999999999999987321                       1


Q ss_pred             eeeeeeecCCCccccccccceeccceEEEEEEecCC-CCEEEEEeCCCeEEEEEcCCce------eeeeeccCCCccccc
Q 015290           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK------VKKIKEMDHFPFVSS  163 (409)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~  163 (409)
                      .+.+..+.+|.            ..|.+++|  +|+ +.+|++++.|+.|++||+.+++      ......         
T Consensus       103 ~~~~~~~~~h~------------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------  159 (416)
T 2pm9_A          103 INSMARFSNHS------------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG---------  159 (416)
T ss_dssp             CCEEEECCCSS------------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC---------
T ss_pred             ccchhhccCCc------------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc---------
Confidence            12566788898            89999999  677 8899999999999999998775      211110         


Q ss_pred             ccccccccCceeccCCCC-CceeecccccccceeEEEecCCcccceeeeeecccc------ccceeEEEeCCCC-CeEEE
Q 015290          164 ENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------DFNINSISNNSDC-ETFVS  235 (409)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~-~~l~~  235 (409)
                       ........+..+.+++. ..+++.+..  ++.|++||++..   +++..+ ..+      ...|.+++|+|++ .++++
T Consensus       160 -~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          160 -QSMSSVDEVISLAWNQSLAHVFASAGS--SNFASIWDLKAK---KEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             -CSCCSSCCCCEEEECSSCTTEEEEESS--SSCEEEEETTTT---EEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             -cccCCCCCeeEEEeCCCCCcEEEEEcC--CCCEEEEECCCC---CcceEE-eccccccccCCceEEEEECCCCCCEEEE
Confidence             00111223334444554 455666554  899999999873   444444 333      7889999999997 57888


Q ss_pred             e-cCC---eEEEEEccCCCceeeeeecCCCcCc-CccCceEEEEEeC-CCCCEEEEEeCCCeEEEEeCCCcccccccccc
Q 015290          236 A-DDL---RINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (409)
Q Consensus       236 ~-~d~---~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  309 (409)
                      + .|+   .|++||++........       +. +|...|.+++|+| ++ .+|++++.||.|++||+++++.    +..
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~----~~~  300 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTPLQT-------LNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQ----LSQ  300 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSCSBC-------CCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCE----EEE
T ss_pred             EECCCCCceEEEEeCCCCCCCcEE-------eecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCcc----cee
Confidence            8 888   9999999943344444       56 7999999999999 77 9999999999999999988653    233


Q ss_pred             ccccccccCCcccccccccceeeeEeccCC-CEEEEee-cCeEEEEEccCCCcceEEEe--------------c------
Q 015290          310 LRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVATFK--------------I------  367 (409)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~~~~~~~~~~~--------------~------  367 (409)
                      +             .+|...|.+++|+|++ ++|++++ |+.|++||+.. ........              .      
T Consensus       301 ~-------------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (416)
T 2pm9_A          301 F-------------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN-LTNTLDEQETETKQQESETDFWNNVSREE  366 (416)
T ss_dssp             E-------------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC-CCCSSCC----------------------
T ss_pred             e-------------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC-CCCCcccccccccccCCcccccccccccc
Confidence            3             3346789999999999 8999987 49999999975 32211110              0      


Q ss_pred             ccCcccccccccCCC-CccceeeEEEcCCCCeEEEcccCCCC
Q 015290          368 HEHLRPKLCDLYNND-SIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |...+... .+.... ....+.+++|+|||++|++++.||+|
T Consensus       367 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v  407 (416)
T 2pm9_A          367 SKEKPSVF-HLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV  407 (416)
T ss_dssp             CCSCCCSS-CCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred             cccccccc-cccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence            11100000 000000 01123589999999999999999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.4e-35  Score=263.87  Aligned_cols=297  Identities=10%  Similarity=0.091  Sum_probs=210.1

Q ss_pred             CCcEEEEEECCCCCEEEEEecCC-------eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGG-------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .-+|++++|+||+++||+|+.+.       .|++|++......     ....+.            ......+.+|+   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~~------------~~~~~~l~~~~---   73 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQFH------------ILSEFALEDND---   73 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHEE------------EEEEEECCTTS---
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeeee------------eeeEEEccCCC---
Confidence            34899999999999999997543       5999999866531     011110            00113466777   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEE-----------eCCCeEEEEEcCCceee--eeeccCCCccccccccccccc
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEK  171 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-----------~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  171 (409)
                               ..|.++++    ++..++++           +.|+++++|++......  ........      .....+.
T Consensus        74 ---------~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~  134 (365)
T 4h5i_A           74 ---------DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFD------ASTNADD  134 (365)
T ss_dssp             ---------CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSS------CCCCTTC
T ss_pred             ---------CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeecee------ecCCccc
Confidence                     78888887    34466655           45778999988654321  11111100      0011122


Q ss_pred             CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCc
Q 015290          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~  251 (409)
                      ....+.+++++.+++.++...|++|++||+++   .+++..+  .|...|.+++|+|+|++++++.++.+.+|+.. .+.
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---~~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~-~~~  208 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSD---LTEKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTV-TGS  208 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTT---TEEEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETT-TCC
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---CcEEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEec-cCc
Confidence            33455677888887766666689999999986   4445444  47788999999999999999955566677766 343


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC----eEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                      .....     ....|...|.+++|+|++ +++++++.|+    .+++||+......     ....        ..+.+|.
T Consensus       209 ~~~~~-----~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~-----~~~~--------~~~~~~~  269 (365)
T 4h5i_A          209 CIARK-----TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTS-----VLRS--------KQVTNRF  269 (365)
T ss_dssp             EEEEE-----CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEE-----EEEE--------EEEESSC
T ss_pred             ceeee-----ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceec-----ceee--------eeecCCC
Confidence            33221     156788899999999999 9999998887    6888988765421     1110        1134557


Q ss_pred             cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ..|++++|+|||++||+|+. +.|+|||+++ ++++..+ .+|...+               ++++|||||++|||||.|
T Consensus       270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          270 KGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECTTSCEEEEEETT
T ss_pred             CCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECCCCCEEEEEeCC
Confidence            78999999999999999975 9999999986 8888876 6888876               799999999999999999


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      ++|
T Consensus       334 ~tv  336 (365)
T 4h5i_A          334 NTI  336 (365)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.4e-36  Score=267.67  Aligned_cols=304  Identities=13%  Similarity=0.115  Sum_probs=216.6

Q ss_pred             cCCCcEEEEEECCC----CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        30 ~h~~~v~~v~~~~~----~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      +|.+.|++++|+|+    ...+++++.++.|++||+.+++.                           +..+..|..   
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------------------------~~~~~~~~~---   65 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------------------------IRLLQSYVD---   65 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------------------------EEEEEEEEC---
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------------------------EEeeeeccc---
Confidence            48999999999984    44566666677999999987653                           222222210   


Q ss_pred             ccccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CC
Q 015290          106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (409)
                          ..+...|.+++|.|...  +.+|++++.|+.|++||+.+++.......+             ...+..+.+++ +.
T Consensus        66 ----~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~  128 (366)
T 3k26_A           66 ----ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH-------------GNAINELKFHPRDP  128 (366)
T ss_dssp             ----SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC-------------CSCEEEEEECSSCT
T ss_pred             ----cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC-------------CCcEEEEEECCCCC
Confidence                00117899999954221  679999999999999999988766554321             22333444455 55


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeee--ccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec-
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-  258 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~-  258 (409)
                      .+++++..  ++.|++||+...   +.+..+  +.+|...|.+++|+|++++|+++ .|+.|++||++ .+.....+.. 
T Consensus       129 ~~l~s~~~--dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~  202 (366)
T 3k26_A          129 NLLLSVSK--DHALRLWNIQTD---TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN-SKRMMNAIKES  202 (366)
T ss_dssp             TEEEEEET--TSCEEEEETTTT---EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC-SHHHHHHHHHH
T ss_pred             CEEEEEeC--CCeEEEEEeecC---eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC-CCcccccccee
Confidence            66666655  899999999874   333332  15799999999999999999999 99999999998 4433222110 


Q ss_pred             --------------------CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC
Q 015290          259 --------------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (409)
Q Consensus       259 --------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  318 (409)
                                          .......|...|.+++|+  + .+|++++.|+.|++||+++.....   ..+..+.....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~  276 (366)
T 3k26_A          203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVT  276 (366)
T ss_dssp             HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEE
T ss_pred             EEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchh
Confidence                                000123488999999999  5 799999999999999998865321   11111111112


Q ss_pred             CcccccccccceeeeEeccC--CCEEEEeec-CeEEEEEccCCCc----ceEEEecc--cCcccccccccCCCCccceee
Q 015290          319 SKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDST----PVATFKIH--EHLRPKLCDLYNNDSIFDKFE  389 (409)
Q Consensus       319 ~~~~~~~~~~~i~~~~~s~~--g~~l~sg~~-~~v~iwd~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~  389 (409)
                      ....+..|...|.+++|+|+  +++|++|+. +.|++||+.. ++    ....+.+|  ...+               ++
T Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v---------------~~  340 (366)
T 3k26_A          277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAI---------------RQ  340 (366)
T ss_dssp             EEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCE---------------EE
T ss_pred             eeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCce---------------EE
Confidence            23345677889999999999  999999975 9999999986 44    33466666  3443               69


Q ss_pred             EEEcCCCCeEEEcccCCCC
Q 015290          390 CSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       390 ~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|+|++++|++++.||.|
T Consensus       341 ~~~s~~~~~l~s~~~dg~i  359 (366)
T 3k26_A          341 TSFSRDSSILIAVCDDASI  359 (366)
T ss_dssp             EEECTTSSEEEEEETTSEE
T ss_pred             EEeCCCCCeEEEEeCCCEE
Confidence            9999999999999999976

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-35  Score=267.44  Aligned_cols=302  Identities=11%  Similarity=0.110  Sum_probs=220.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|+|  ++||+|+.||.|++|++.+++..                     ..+..+..+.+|.        
T Consensus        14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~--------   62 (397)
T 1sq9_A           14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK--------   62 (397)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT--------
T ss_pred             hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC--------
Confidence            4999999999998  79999999999999999876521                     0123456777888        


Q ss_pred             ceeccceEEEEEEecCC----C---CEEEEEeCCCeEEEEEcCCcee-----eeeeccCCCcccccccccccccCceecc
Q 015290          110 LEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~----~---~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (409)
                          ..|.+++|  +++    +   .+|++++.|+.|++||+.+++.     ......+...        .....+..+.
T Consensus        63 ----~~v~~~~~--~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~  128 (397)
T 1sq9_A           63 ----SGLHHVDV--LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD--------MKKHSFWALK  128 (397)
T ss_dssp             ----TCEEEEEE--EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT--------GGGSCEEEEE
T ss_pred             ----CcEEEEEE--ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc--------cCCCcEEEEE
Confidence                89999999  567    8   8999999999999999987764     3322211100        0013333444


Q ss_pred             CC----CCCce-eecccccccceeEEEecCC------cccce--eeeeec------cccccceeEEEeCCCCCeEEEe-c
Q 015290          178 NP----PSFAH-GYHLEWTENMATKIANVGN------SVHAR--CQKVYP------HAHDFNINSISNNSDCETFVSA-D  237 (409)
Q Consensus       178 ~~----~~~~~-~~~~~~~~~~~i~~~~~~~------~~~~~--~~~~~~------~~~~~~v~~l~~~~~~~~l~~~-~  237 (409)
                      ++    +.+.. ++.+..  ++.|++||+..      .....  +...+.      ..|...|.+++|+|++ .++++ .
T Consensus       129 ~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~  205 (397)
T 1sq9_A          129 WGASNDRLLSHRLVATDV--KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN  205 (397)
T ss_dssp             EECCC----CEEEEEEET--TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT
T ss_pred             EeeccCCCCceEEEEEeC--CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC
Confidence            44    55555 666654  89999999976      32222  000221      3478899999999999 99999 9


Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcC---c---cCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDD---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSAR  308 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~  308 (409)
                      |+.|++||++ .+..+..       +..   |   ...|.+++|+|++ .+|++++.|   |.|++||+++++.    +.
T Consensus       206 dg~i~i~d~~-~~~~~~~-------~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~----~~  272 (397)
T 1sq9_A          206 NGTVQISELS-TLRPLYN-------FESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER----IG  272 (397)
T ss_dssp             TSEEEEEETT-TTEEEEE-------EECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE----EE
T ss_pred             CCcEEEEECC-CCceeEE-------EeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc----cc
Confidence            9999999999 6666655       455   7   8899999999999 999999999   9999999988653    12


Q ss_pred             cccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe------cc-------------
Q 015290          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK------IH-------------  368 (409)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~------~~-------------  368 (409)
                      .+...............|...|.+++|+|++++|++++. +.|++||+++ ++++..+.      +|             
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  351 (397)
T 1sq9_A          273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDS  351 (397)
T ss_dssp             EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhcccccccc
Confidence            222200000000001126789999999999999999974 9999999986 88888888      66             


Q ss_pred             --cCcccccccccCCCCccceeeEEEcCCC----------CeEEEcccCCCC
Q 015290          369 --EHLRPKLCDLYNNDSIFDKFECSVSGDG----------LHFATGSYRRDN  408 (409)
Q Consensus       369 --~~~~~~~~~~~~~~~~~~v~~~~~spdg----------~~l~s~s~dg~i  408 (409)
                        ...               |.+++|+|+|          ++|++++.||.|
T Consensus       352 ~~~~~---------------v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          352 LAEPG---------------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             CSSCC---------------EEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             ccCCc---------------eeEEEeccccccccccccccceEEEecCCCcE
Confidence              333               3799999998          799999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-36  Score=273.59  Aligned_cols=251  Identities=12%  Similarity=0.099  Sum_probs=187.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +.++|++++|+|++++||+|+.||.|+|||+.++.                         ++.+..+.+|.         
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~---------   55 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD---------   55 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence            46789999999999999999999999999998762                         12456788898         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce-eeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         +.|.+++|  +|++++|++++.|++|++||+.++. .......           ......+..+.+++++..++.+.
T Consensus        56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~  119 (377)
T 3dwl_C           56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-----------LRLNRAATFVRWSPNEDKFAVGS  119 (377)
T ss_dssp             ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCEEEC-----------CCCSSCEEEEECCTTSSCCEEEE
T ss_pred             ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-----------cccCCceEEEEECCCCCEEEEEe
Confidence               89999999  7899999999999999999998876 2111111           11223445555666667777766


Q ss_pred             ccccceeEEEecCCcccceeeeeeccc-cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC-----------------C
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------D  250 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~-----------------~  250 (409)
                      .  ++.|++||++......+.+.+ .. |...|.+++|+|++++|+++ .|+.|++||++..                 +
T Consensus       120 ~--d~~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  196 (377)
T 3dwl_C          120 G--ARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN  196 (377)
T ss_dssp             S--SSCEEECCC-----CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred             c--CCeEEEEEECCcccceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence            5  899999999875544455655 45 99999999999999999999 9999999998521                 1


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      ..+.       .+ +|...|++++|+|++ ++|++++.||.|++||+++++.....+..             +.+|...|
T Consensus       197 ~~~~-------~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~v  254 (377)
T 3dwl_C          197 TVCA-------EY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALIT-------------VKLSQLPL  254 (377)
T ss_dssp             EEEE-------CC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCC-------------EECSSSCE
T ss_pred             hhhh-------cc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEe-------------ecCCCCce
Confidence            1221       14 789999999999999 99999999999999999987531111122             34557789


Q ss_pred             eeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          331 SDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                      .+++|+|+|++|++|+++.+.+|+..
T Consensus       255 ~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          255 RSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             EEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            99999999999999988666688765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=256.46  Aligned_cols=264  Identities=14%  Similarity=0.262  Sum_probs=196.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|.+++|+|++++||+|+.|+.|+||+...+.                         .+.+..+.+|.       
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~-------  105 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------------------------FECVTTLEGHE-------  105 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------------EEEEEEECCCS-------
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------------eEEEEEccCCC-------
Confidence            3599999999999999999999999999999987653                         23567889999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeee-eeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                           +.|.+++|  +|++++|++++.|++|++||+.++.... .....           .....+..+.+++++.++++
T Consensus       106 -----~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----------~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A          106 -----NEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-----------SHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-----------CCCSCEEEEEECSSSSCEEE
T ss_pred             -----CCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-----------CcCCCeEEEEECCCCCEEEE
Confidence                 89999999  7999999999999999999998654321 11110           11223444556677777777


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc--------------e
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--------------C  252 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~--------------~  252 (409)
                      ++.  |+.|++|+.+... ..+...+ .+|...|.+++|+|++++|+++ .|++|++||....+.              +
T Consensus       168 ~s~--d~~i~~w~~~~~~-~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          168 ASY--DDTVKLYREEEDD-WVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             EET--TSCEEEEEEETTE-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EeC--CCcEEEEEecCCC-EEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            765  8999999987532 1233444 7899999999999999999999 999999999752221              1


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      +..+      ...|...|++++|+|++ ..|++++.|+.|++|+...+.........+..        ....+|...|++
T Consensus       244 ~~~~------~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--------~~~~~h~~~V~~  308 (345)
T 3fm0_A          244 ICTL------SGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTA--------HLHQAHSQDVNC  308 (345)
T ss_dssp             EEEE------CSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEE--------EETTSSSSCEEE
T ss_pred             eEEe------cCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe--------eecccccCcEeE
Confidence            1111      12388899999999999 99999999999999998765321110000111        113467889999


Q ss_pred             eEeccCC-CEEEEeec-CeEEEEEccCCCcce
Q 015290          333 IKFANDG-QHLLSRDY-MNLKLWDIRMDSTPV  362 (409)
Q Consensus       333 ~~~s~~g-~~l~sg~~-~~v~iwd~~~~~~~~  362 (409)
                      ++|+|++ .+||+|++ +.|++|++.. ++.+
T Consensus       309 v~~~p~~~~~laS~s~Dg~v~~W~~~~-~~~~  339 (345)
T 3fm0_A          309 VAWNPKEPGLLASCSDDGEVAFWKYQR-PEGL  339 (345)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             eEEeCCCceEEEEcCCCCcEEEEEecC-CCCc
Confidence            9999998 58999974 9999999985 4443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=269.05  Aligned_cols=290  Identities=13%  Similarity=0.185  Sum_probs=219.0

Q ss_pred             CCCcEEEEEECCCCC-EEEEE----------ecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC
Q 015290           31 DVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS   99 (409)
Q Consensus        31 h~~~v~~v~~~~~~~-~la~~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (409)
                      +...|.+++|+|+++ +||+|          +.||.|+|||+.++...                        +.+.. ..
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~-~~   65 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIAS-LQ   65 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCC-CC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEE-Ee
Confidence            456789999999987 99999          88999999999876520                        01112 23


Q ss_pred             CCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC----ceeeeeeccCCCcccccccccccccCcee
Q 015290          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (409)
Q Consensus       100 h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (409)
                      |.            ..|.+++|  +|++++|++++.|+.|++||+.+    .+...... .+.            ..+..
T Consensus        66 ~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~------------~~v~~  118 (416)
T 2pm9_A           66 VD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHS------------SSVKT  118 (416)
T ss_dssp             CS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSS------------SCCCE
T ss_pred             cC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCc------------cceEE
Confidence            55            79999999  79999999999999999999987    22222221 112            22333


Q ss_pred             ccCCCC-CceeecccccccceeEEEecCCcc------cceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEc
Q 015290          176 EHNPPS-FAHGYHLEWTENMATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNL  246 (409)
Q Consensus       176 ~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~  246 (409)
                      +.++++ ..+++++..  ++.|++||+....      ....... ...|...|.+++|+|+ +.+|+++ .|+.|++||+
T Consensus       119 ~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  195 (416)
T 2pm9_A          119 VKFNAKQDNVLASGGN--NGEIFIWDMNKCTESPSNYTPLTPGQ-SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL  195 (416)
T ss_dssp             EEECSSSTTBEEEECS--SSCEEBCBTTTTSSCTTTCCCBCCCC-SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred             EEEcCCCCCEEEEEcC--CCeEEEEECCCCcccccccccccccc-ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence            334444 455665554  8999999998754      2222222 2578999999999999 7889999 9999999999


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (409)
                      + .+..+..+... ....+|...+.+++|+|++..+|++++.|+   .|++||++++...   ...+.            
T Consensus       196 ~-~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~------------  258 (416)
T 2pm9_A          196 K-AKKEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN------------  258 (416)
T ss_dssp             T-TTEEEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC------------
T ss_pred             C-CCCcceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee------------
Confidence            9 56665553211 011234788999999999757999999998   9999999885321   12222            


Q ss_pred             cccccceeeeEecc-CCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEE
Q 015290          324 TEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFA  400 (409)
Q Consensus       324 ~~~~~~i~~~~~s~-~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~  400 (409)
                      .+|...|.+++|+| ++++|++++ |+.|++||+++ ++++..+.+|...+               .+++|+|++ .+|+
T Consensus       259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFA  322 (416)
T ss_dssp             SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEE
T ss_pred             cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEE
Confidence            04567899999999 899999997 49999999986 88999999988876               599999999 8999


Q ss_pred             EcccCCCC
Q 015290          401 TGSYRRDN  408 (409)
Q Consensus       401 s~s~dg~i  408 (409)
                      +++.||.|
T Consensus       323 s~~~d~~i  330 (416)
T 2pm9_A          323 CASFDNKI  330 (416)
T ss_dssp             ECCSSSEE
T ss_pred             EEecCCcE
Confidence            99999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-34  Score=254.29  Aligned_cols=244  Identities=18%  Similarity=0.270  Sum_probs=197.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|+|++++||+|+.|+.|++|++.+...                       ..+....+.+|.        
T Consensus        95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~h~--------  143 (340)
T 1got_B           95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT--------  143 (340)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-----------------------SCEEEEEEECCS--------
T ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-----------------------cceeEEEecCCC--------
Confidence            3788999999999999999999999999999986542                       233556788998        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|.++.|  ++++ .+++++.|++|++||+.+++.......+             .+.+..+.+++++.++++++
T Consensus       144 ----~~v~~~~~--~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          144 ----GYLSCCRF--LDDN-QIVTSSGDTTCALWDIETGQQTTTFTGH-------------TGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             ----SCEEEEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTSSEEEEEE
T ss_pred             ----ccEEEEEE--CCCC-cEEEEECCCcEEEEECCCCcEEEEEcCC-------------CCceEEEEECCCCCEEEEEe
Confidence                89999999  4555 6999999999999999988776554322             22344455566667777766


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  |+.|++||+..   ..+...+ .+|...|.+++|+|++++|++| .|++|++||++ ....+..+.     ...+..
T Consensus       204 ~--d~~v~~wd~~~---~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~-----~~~~~~  271 (340)
T 1got_B          204 C--DASAKLWDVRE---GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLR-ADQELMTYS-----HDNIIC  271 (340)
T ss_dssp             T--TSCEEEEETTT---CSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEEC-----CTTCCS
T ss_pred             C--CCcEEEEECCC---CeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC-CCcEEEEEc-----cCCccc
Confidence            5  99999999976   4555665 7899999999999999999999 99999999998 555554421     233446


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .|++++|+|++ ++|++|+.|+.|++||+.+++.    ...             +.+|...|.+++|+|+|++|++|+ |
T Consensus       272 ~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~----~~~-------------~~~h~~~v~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          272 GITSVSFSKSG-RLLLAGYDDFNCNVWDALKADR----AGV-------------LAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEE-------------EECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ceEEEEECCCC-CEEEEECCCCeEEEEEcccCcE----eeE-------------eecCCCcEEEEEEcCCCCEEEEEcCC
Confidence            79999999999 9999999999999999987643    122             345678999999999999999998 5


Q ss_pred             CeEEEEE
Q 015290          348 MNLKLWD  354 (409)
Q Consensus       348 ~~v~iwd  354 (409)
                      +.|+|||
T Consensus       334 ~~i~iWd  340 (340)
T 1got_B          334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             ccEEecC
Confidence            9999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-34  Score=258.76  Aligned_cols=253  Identities=14%  Similarity=0.113  Sum_probs=184.2

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|...|++++|+|++++ ++++.||+|+|||+.+++..                       ........+|.      
T Consensus        90 ~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------  139 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------  139 (357)
T ss_dssp             EEECSSCEEEEEEETTTEE-EEEETTSCEEEC-------------------------------CCCCEEECCCS------
T ss_pred             cCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeecccccee-----------------------EEEeeccCCCC------
Confidence            3458899999999999865 56778999999999876531                       00112345777      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC-ceee
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGY  186 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  186 (409)
                            +.|++++|  +|++++|++++.|++|++||+.+++.......+. ..+.+            +.+++.. .+++
T Consensus       140 ------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~-~~v~~------------v~~s~~~~~~~~  198 (357)
T 4g56_B          140 ------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS-SEVNC------------VAACPGKDTIFL  198 (357)
T ss_dssp             ------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEE------------EEECTTCSSCEE
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEE------------EEEccCCCceee
Confidence                  89999999  7999999999999999999999988766654322 12222            2223322 2344


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      +++.  |+.|++||+++........  ...+...+.+++|+|++ .+|++| .|+.|++||++ .++.+..       +.
T Consensus       199 s~~~--dg~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~-~~~~~~~-------~~  266 (357)
T 4g56_B          199 SCGE--DGRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK-NPDSAQT-------SA  266 (357)
T ss_dssp             EEET--TSCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS-CGGGCEE-------EC
T ss_pred             eecc--CCceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecccceeEEECC-CCcEeEE-------Ee
Confidence            4433  8999999998744333222  24677889999999984 678888 99999999998 5666655       67


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL  343 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~  343 (409)
                      +|...|++++|+|++.++|++|+.|++|+|||+++++..    ..              .+|...|++++|+| ++++|+
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~----~~--------------~~H~~~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF----RD--------------LSHRDFVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE----EE--------------CCCSSCEEEEEECSSSTTEEE
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe----EE--------------CCCCCCEEEEEEeCCCCCEEE
Confidence            899999999999998578999999999999999887531    11              23578999999998 799999


Q ss_pred             Eee-cCeEEEEEccCCCcc
Q 015290          344 SRD-YMNLKLWDIRMDSTP  361 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~~~~  361 (409)
                      +++ |++|++||+...++.
T Consensus       329 s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          329 TVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EEETTSCEEEEECC-----
T ss_pred             EEcCCCeEEEEECCCCCcc
Confidence            987 599999999764433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-34  Score=250.01  Aligned_cols=267  Identities=15%  Similarity=0.145  Sum_probs=207.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|++++| |++++||+|+.||.|++||+.++.                           ....+..|.         
T Consensus        17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~---------   59 (313)
T 3odt_A           17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ---------   59 (313)
T ss_dssp             CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS---------
T ss_pred             CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC---------
Confidence            8999999999 999999999999999999997665                           356677787         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce---eeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                         ..|.+++|  +|++++|++++.|+.|++|++....   ...... .....+.++.            +  +...++.
T Consensus        60 ---~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~------------~--~~~~l~~  119 (313)
T 3odt_A           60 ---GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLS------------F--QDGVVIS  119 (313)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEE------------E--ETTEEEE
T ss_pred             ---ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEE------------e--cCCEEEE
Confidence               89999999  6899999999999999999987642   111111 1111122222            1  2234444


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      +..  ++.+++||.     ......+ ..|...+.+++|+| +++.++++ .|+.|++||..   .....+      ...
T Consensus       120 ~~~--d~~i~~~d~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~------~~~  182 (313)
T 3odt_A          120 GSW--DKTAKVWKE-----GSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF------SGI  182 (313)
T ss_dssp             EET--TSEEEEEET-----TEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE------CSS
T ss_pred             EeC--CCCEEEEcC-----CcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE------ecc
Confidence            444  889999992     3555555 78999999999988 89999999 99999999944   333332      233


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |...+.+++|+|++ . +++++.||.|++||+++++.    ...+             .+|...|.+++|+|++. |+++
T Consensus       183 ~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~----~~~~-------------~~~~~~i~~~~~~~~~~-l~~~  242 (313)
T 3odt_A          183 HNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV----LRTY-------------EGHESFVYCIKLLPNGD-IVSC  242 (313)
T ss_dssp             CSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE----EEEE-------------ECCSSCEEEEEECTTSC-EEEE
T ss_pred             CcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh----hhhh-------------hcCCceEEEEEEecCCC-EEEE
Confidence            88899999999998 6 99999999999999988653    2333             33467899999999995 6666


Q ss_pred             e-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      + |+.|++||+++ ++++..+..|...+               .+++|+|+++ +++++.||.|
T Consensus       243 ~~dg~v~iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          243 GEDRTVRIWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             ETTSEEEEECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCE
T ss_pred             ecCCEEEEEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcE
Confidence            5 69999999986 88889998888765               6999999998 5678889875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=256.94  Aligned_cols=307  Identities=13%  Similarity=0.184  Sum_probs=215.3

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..|.+.|++++|+| ++++||+|+.||.|++||+.++....       .+.....       .........+|.      
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~------   99 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-------YYTCKAV-------CSIGRDHPDVHR------   99 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-------CEEECEE-------EEECTTCTTCCS------
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-------eEecccc-------ccccccccccCC------
Confidence            34999999999999 99999999999999999999876420       0000000       000000113466      


Q ss_pred             ccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                            ..|.+++|  +| ++.+|++++.|+.|++||+.+++........  ..+.++.+.         ...+...+++
T Consensus       100 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~  160 (408)
T 4a11_B          100 ------YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--ETVYSHHMS---------PVSTKHCLVA  160 (408)
T ss_dssp             ------SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEEC---------SSCSSCCEEE
T ss_pred             ------CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC--CceeeeEee---------cCCCCCcEEE
Confidence                  89999999  57 7789999999999999999988776654421  111111111         1122333555


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecC-----
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMK-----  259 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~-----  259 (409)
                      .+..  ++.+++||+.+   .+++..+ .+|...|.+++|+|+++. ++++ .||.|++||++.....+..+...     
T Consensus       161 ~~~~--~~~v~~~d~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          161 VGTR--GPKVQLCDLKS---GSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             EEES--SSSEEEEESSS---SCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             EEcC--CCeEEEEeCCC---cceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence            5544  88999999976   3445555 789999999999999985 7788 99999999998444344443111     


Q ss_pred             ---CCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          260 ---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       260 ---~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                         ......|...|.+++|+|++ ++|++++.||.|++||+++++..    .....+....       ............
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~  302 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENT----LVNYGKVCNN-------SKKGLKFTVSCG  302 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBC----CCCCCCCCCC-------CSSCCCCEECCS
T ss_pred             eeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccc----eecccccccc-------ccccceeEEecC
Confidence               11236788999999999999 99999999999999999987642    1111100000       001122223333


Q ss_pred             cCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          337 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       337 ~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..+.+++++.++.|++||+.+ ++++..+.+|...+               .+++|+|++++|++++.||.|
T Consensus       303 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s~~~dg~i  358 (408)
T 4a11_B          303 CSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTV---------------DCCVFQSNFQELYSGSRDCNI  358 (408)
T ss_dssp             SSSCEEEEEETTEEEEEETTT-CCEEEEECCCSSCE---------------EEEEEETTTTEEEEEETTSCE
T ss_pred             CCceEEEEecCCEEEEEECcC-CcceeeeccCCCeE---------------EEEEEcCCCCEEEEECCCCeE
Confidence            344555555679999999986 89999999998876               699999999999999999976

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=256.64  Aligned_cols=290  Identities=11%  Similarity=0.066  Sum_probs=211.1

Q ss_pred             cCCCcEEEEEECCCCCEE-EEEec---CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~l-a~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      +|.+.|++++|+|++..+ ++|+.   ||.|+|||+.+++.                          ......+|.    
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--------------------------~~~~~~~~~----   65 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--------------------------KLLREIEKA----   65 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--------------------------EEEEEEEES----
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--------------------------cceeeeccc----
Confidence            389999999999999655 56665   99999999987663                          111223566    


Q ss_pred             ccccceeccceEEEEEEecCC---CCEEEEEeCCCeEEEEEcCCce-eeeeeccCCCcccccccccccccCceeccCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                              ..|.+++|  +|+   +.+|++++.|+.|++||+.+++ .......+ ...+.++.+..      ...++++
T Consensus        66 --------~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~------~~~~s~~  128 (357)
T 3i2n_A           66 --------KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH-KEIINAIDGIG------GLGIGEG  128 (357)
T ss_dssp             --------SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC-SSCEEEEEEES------GGGCC-C
T ss_pred             --------CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec-ccceEEEeecc------ccccCCC
Confidence                    89999999  677   6999999999999999999876 43333211 12222221110      0134556


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeecccc----ccceeEEE----eCCCCCeEEEe-cCCeEEEEEccCCCce
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH----DFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQC  252 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~v~~l~----~~~~~~~l~~~-~d~~i~lwd~~~~~~~  252 (409)
                      +..++++..  ++.+++||+.....  ++..+ ..|    ...+.+++    |+|++++++++ .|+.|++||++ .+..
T Consensus       129 ~~~l~~~~~--d~~i~vwd~~~~~~--~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~  202 (357)
T 3i2n_A          129 APEIVTGSR--DGTVKVWDPRQKDD--PVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR-NMAL  202 (357)
T ss_dssp             CCEEEEEET--TSCEEEECTTSCSS--CSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-TTEE
T ss_pred             ccEEEEEeC--CCeEEEEeCCCCCC--cceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-cCce
Confidence            666776665  89999999987431  23333 333    33788888    78999999999 99999999999 5554


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeC---CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      ..        ...|...|.+++|+|   ++ .+|++++.||.|++||+++++..    ..+..        ..+.+|...
T Consensus       203 ~~--------~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------~~~~~~~~~  261 (357)
T 3i2n_A          203 RW--------ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFAS--------VSEKAHKST  261 (357)
T ss_dssp             EE--------EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEE--------EEEECCSSC
T ss_pred             ee--------ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceee--------eccCCCcCC
Confidence            33        345778999999999   88 99999999999999999876531    22211        012356789


Q ss_pred             eeeeEeccCCC-EEEEeec-CeEEEEEccCCC------------------cceEEEecccCcccccccccCCCCccceee
Q 015290          330 ISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDS------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (409)
Q Consensus       330 i~~~~~s~~g~-~l~sg~~-~~v~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (409)
                      |.+++|+|+++ +|++++. +.|++||++...                  +.+..+.+|...+               .+
T Consensus       262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v---------------~~  326 (357)
T 3i2n_A          262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI---------------SS  326 (357)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE---------------EE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe---------------eE
Confidence            99999999998 7888874 999999997522                  3466677777665               69


Q ss_pred             EEEcCCCCeEE-EcccCCCC
Q 015290          390 CSVSGDGLHFA-TGSYRRDN  408 (409)
Q Consensus       390 ~~~spdg~~l~-s~s~dg~i  408 (409)
                      ++|+|+|++|+ +++.||.|
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEE
T ss_pred             EEEcCCCCeEEEEecCCCcE
Confidence            99999999998 89999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-34  Score=256.84  Aligned_cols=292  Identities=11%  Similarity=0.068  Sum_probs=216.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|.+.|++++|+|++++||+|+.||.|+||++.++..                        ......+.+|.        
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~--------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK--------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence            4899999999999999999999999999999987651                        11234455777        


Q ss_pred             ceeccceEEEEEEecCCCC-EEEEEeCCCeEEEEEc-CCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                          ..|.+++|  +|+++ +|++++.|+.|++||+ .+++............+.            .+.+++ ...+++
T Consensus        57 ----~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~------------~l~~~~-~~~l~s  117 (342)
T 1yfq_A           57 ----HPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC------------RICKYG-DDKLIA  117 (342)
T ss_dssp             ----SCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE------------EEEEET-TTEEEE
T ss_pred             ----CceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE------------EEEeCC-CCEEEE
Confidence                89999999  67899 9999999999999999 877653332100222222            333333 445555


Q ss_pred             ccccccceeEEEecCCccc------ceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC-CCceeeeeecC
Q 015290          188 LEWTENMATKIANVGNSVH------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-SDQCFNIVDMK  259 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~  259 (409)
                      ++.  ++.|++||+.....      .+++..+  .|...|.+++|+|++  ++++ .|+.|++||++. ........   
T Consensus       118 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~---  188 (342)
T 1yfq_A          118 ASW--DGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE---  188 (342)
T ss_dssp             EET--TSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE---
T ss_pred             EcC--CCeEEEEcccccccccccccCCeeeEE--eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee---
Confidence            544  89999999864111      3344443  388899999999987  7777 999999999984 22222221   


Q ss_pred             CCcCcCccCceEEEEEeC-CCCCEEEEEeCCCeEEEEeCCCc--cccccccccccccccccCCcccccccccceeeeEec
Q 015290          260 PSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                         ...|...+.+++|+| ++ ++|++++.||.|++||++..  .........+..|....    .-.+|...|.+++|+
T Consensus       189 ---~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          189 ---ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL----KDTNLAYPVNSIEFS  260 (342)
T ss_dssp             ---ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT----TCCSSCCCEEEEEEC
T ss_pred             ---ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc----cccccceeEEEEEEc
Confidence               356778999999999 98 99999999999999999875  11011123344421110    011345589999999


Q ss_pred             cCCCEEEEeec-CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          337 NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       337 ~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      |++++|++++. +.|++||+.+ ++.+..+.+| ...+               .+++  |++++|++++.||+
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v---------------~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSV---------------VKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSEE---------------EEEE--ECSSEEEEEEECTH
T ss_pred             CCCCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCCc---------------eEec--CCCCeEEEEecCCc
Confidence            99999999975 9999999986 8888888887 7765               5777  99999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.6e-34  Score=249.68  Aligned_cols=254  Identities=20%  Similarity=0.303  Sum_probs=190.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|.+++|+|++++|++|+.|++|+|||+.+++                           .+..+.+|.       
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~---------------------------~~~~~~~h~-------  107 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---------------------------TYQRFVGHK-------  107 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC---------------------------eeEEEccCC-------
Confidence            3599999999999999999999999999999998776                           467789999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  ++++.+|++++.|++|++||+..........  ....+.++.+.+...      .......++++
T Consensus       108 -----~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~--h~~~v~~~~~~~~~~------~~~~~~~l~s~  172 (319)
T 3frx_A          108 -----SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQCLATLLG--HNDWVSQVRVVPNEK------ADDDSVTIISA  172 (319)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCEEEEECC--CSSCEEEEEECCC------------CCEEEEE
T ss_pred             -----CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEEEec--cCCcEEEEEEccCCC------CCCCccEEEEE
Confidence                 89999999  7999999999999999999997654333221  111222222211100      01123345555


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      +.  |+.|++||+..   .++...+ .+|...|.+++|+|++++|++| .|+.|++||+. .++.+..+       . +.
T Consensus       173 ~~--d~~i~~wd~~~---~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~-~~~~~~~~-------~-~~  237 (319)
T 3frx_A          173 GN--DKMVKAWNLNQ---FQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-AKKAMYTL-------S-AQ  237 (319)
T ss_dssp             ET--TSCEEEEETTT---TEEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT-TTEEEEEE-------E-CC
T ss_pred             eC--CCEEEEEECCc---chhheee-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEe-------c-CC
Confidence            54  89999999976   3445555 7899999999999999999999 99999999999 66666553       3 34


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|.+++|+|++ .+|++++.+ .+++|++..+...    ..+..     ........|...+.+++|+|||++|++|+.
T Consensus       238 ~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~~----~~~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~sg~~  306 (319)
T 3frx_A          238 DEVFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYLV----DDLRP-----EFAGYSKAAEPHAVSLAWSADGQTLFAGYT  306 (319)
T ss_dssp             SCEEEEEECSSS-SEEEEEETT-EEEEEEETTEEEE----EEECC-----CCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCeee----eccCc-----cccccccCcCcceeEEEECCCCCEEEEeec
Confidence            679999999999 888887755 5999999875431    11111     111112345668999999999999999974


Q ss_pred             -CeEEEEEccC
Q 015290          348 -MNLKLWDIRM  357 (409)
Q Consensus       348 -~~v~iwd~~~  357 (409)
                       +.|+|||+.+
T Consensus       307 Dg~i~vWd~~t  317 (319)
T 3frx_A          307 DNVIRVWQVMT  317 (319)
T ss_dssp             TSCEEEEEEEE
T ss_pred             CceEEEEEEee
Confidence             9999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.1e-34  Score=254.35  Aligned_cols=261  Identities=12%  Similarity=0.129  Sum_probs=200.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||.|++||+.++..                       ..+....+.+|.       
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~-------   57 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD-------   57 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence            35999999999999999999999999999999987653                       334667788998       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|.|..++++|++++.|++|++||+.++......                                   
T Consensus        58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~-----------------------------------   97 (351)
T 3f3f_A           58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG-----------------------------------   97 (351)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----------------------------------
T ss_pred             -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----------------------------------
Confidence                 8999999942116899999999999999999876431100                                   


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeec------C
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDM------K  259 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~------~  259 (409)
                                      ...+++..+ ..|...|.+++|+|+  +++++++ .|+.|++||++ ....+..+..      .
T Consensus        98 ----------------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           98 ----------------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL-EPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             ----------------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS-STTCTTCCEEEEEEESC
T ss_pred             ----------------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC-ChHHhcccccccccccc
Confidence                            001222233 678999999999999  9999999 99999999998 4443322111      1


Q ss_pred             CCcCcCccCceEEEEEeCC---CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          260 PSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                      ......|...+.+++|+|+   + .+|++++.++.+.+|+...++.     ....          .+.+|...|.+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~-----~~~~----------~~~~h~~~i~~~~~~  223 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKL-----HVAA----------KLPGHKSLIRSISWA  223 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCE-----EEEE----------ECCCCCSCEEEEEEC
T ss_pred             ccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCce-----eeee----------ecCCCCcceeEEEEC
Confidence            1112367889999999997   6 8999999999998888776542     1111          134567899999999


Q ss_pred             cCC----CEEEEeec-CeEEEEEccCCC---------------------------------------------cceEEEe
Q 015290          337 NDG----QHLLSRDY-MNLKLWDIRMDS---------------------------------------------TPVATFK  366 (409)
Q Consensus       337 ~~g----~~l~sg~~-~~v~iwd~~~~~---------------------------------------------~~~~~~~  366 (409)
                      |++    ++|++|+. +.|++||++...                                             +.+..+.
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence            998    89999874 999999997521                                             4455556


Q ss_pred             cccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +|...+               ++++|+|++++|++|+.||.|
T Consensus       304 ~h~~~v---------------~~~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          304 DHNGEV---------------WSVSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             TTSSCE---------------EEEEECSSSCCEEEEETTSCE
T ss_pred             cccccE---------------EEEEEcCCCCEEEEecCCCcE
Confidence            666554               799999999999999999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=260.79  Aligned_cols=249  Identities=16%  Similarity=0.216  Sum_probs=195.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||.|+||++....                         .+.+..+.+|.       
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~-------   55 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE-------   55 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCS-------
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-------------------------ceeeeEecCCC-------
Confidence            4599999999999999999999999999999997432                         23567788998       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           +.|++++|.|..++.+|++++.|+.|++||+.+++....                                    
T Consensus        56 -----~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------------------------------------   94 (379)
T 3jrp_A           56 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------------------------------   94 (379)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEE------------------------------------
T ss_pred             -----CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEe------------------------------------
Confidence                 899999994222389999999999999999988753222                                    


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                                            ..+ ..|...|.+++|+|+  +++|+++ .|+.|++||++........      .+..
T Consensus        95 ----------------------~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~  145 (379)
T 3jrp_A           95 ----------------------AVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA  145 (379)
T ss_dssp             ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEEC
T ss_pred             ----------------------eee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecC
Confidence                                  111 568889999999999  9999999 9999999999833222221      1567


Q ss_pred             ccCceEEEEEeC-------------CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       266 ~~~~v~~~~~~p-------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      |...|.+++|+|             ++ .+|++++.||.|++||++++........             .+.+|...|.+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~h~~~v~~  211 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLES-------------TLEGHSDWVRD  211 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEE-------------EECCCSSCEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEE-------------EEecccCcEeE
Confidence            889999999999             57 9999999999999999987542111111             23456789999


Q ss_pred             eEeccC---CCEEEEee-cCeEEEEEccCCCcce-EEE-ec--ccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          333 IKFAND---GQHLLSRD-YMNLKLWDIRMDSTPV-ATF-KI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       333 ~~~s~~---g~~l~sg~-~~~v~iwd~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      ++|+|+   +++|++++ |+.|++||++...... ..+ ..  |...               |++++|+|+|++|++++.
T Consensus       212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEES
T ss_pred             EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEecC
Confidence            999999   89999997 5999999998622221 111 11  3333               269999999999999999


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      ||.|
T Consensus       277 dg~i  280 (379)
T 3jrp_A          277 DNKV  280 (379)
T ss_dssp             SSSE
T ss_pred             CCcE
Confidence            9975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-33  Score=256.88  Aligned_cols=276  Identities=17%  Similarity=0.217  Sum_probs=212.0

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .++.|+||++ ++||+|. |++|+|||..+++..                         .+..+.+|.            
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------  147 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------  147 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            4677999976 5888875 899999999988631                         122345666            


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..|++|+|  +|+|++|++|+.|++|++||+.+++.......+... +.++.              .+..+++++..  +
T Consensus       148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~-v~~~s--------------~~~~~l~sgs~--d  208 (420)
T 4gga_A          148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGSLS--------------WNSYILSSGSR--S  208 (420)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEE--------------EETTEEEEEET--T
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-eEEEe--------------eCCCEEEEEeC--C
Confidence            78999999  799999999999999999999998877665433211 11111              12244555544  8


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                      +.+++|+.....  ..+..+ .+|...+..+.++|++++++++ .|+.+++|+..........    ......|...|.+
T Consensus       209 ~~i~~~d~~~~~--~~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~~V~~  281 (420)
T 4gga_A          209 GHIHHHDVRVAE--HHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKA  281 (420)
T ss_dssp             SEEEEEETTSSS--CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSSCEEE
T ss_pred             CceeEeeecccc--eeeEEe-cccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCCceee
Confidence            899999987633  233344 7899999999999999999999 9999999999832221111    0114678899999


Q ss_pred             EEEeCCCCCEEEEE--eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee---c
Q 015290          273 AEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y  347 (409)
Q Consensus       273 ~~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~---~  347 (409)
                      ++|+|.+..+++++  +.|++|++||+++++..    ..+..              ...+.++.|+|+++.+++++   |
T Consensus       282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~sg~~d  343 (420)
T 4gga_A          282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGHGFAQ  343 (420)
T ss_dssp             EEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEECTTT
T ss_pred             eeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEEecCC
Confidence            99999886777664  57999999999987642    33333              35789999999999888753   4


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +.|+|||+.+ ++++..+.+|...+               ++++|+|||++|+||+.||+|
T Consensus       344 ~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          344 NQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             CCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEE
T ss_pred             CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeE
Confidence            9999999986 89999999999876               699999999999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.4e-33  Score=248.24  Aligned_cols=265  Identities=14%  Similarity=0.195  Sum_probs=190.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|++++|+|++.+|++|+.|++|++||+.+++                           .+..+.+|.       
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~---------------------------~~~~~~~h~-------  118 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT---------------------------TYKRFVGHQ-------  118 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC---------------------------EEEEEECCC-------
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEcCCC-------
Confidence            4599999999999999999999999999999998776                           467788999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc-CCCcccccccccccccCceeccCCCCCceeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                           ..|.+++|  +|++++|++++.|++|++||+........... .....+.++.+.+......  ...+...++++
T Consensus       119 -----~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~l~s  189 (343)
T 2xzm_R          119 -----SEVYSVAF--SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN--KVQPFAPYFAS  189 (343)
T ss_dssp             -----SCEEEEEE--CSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS--CCCSSCCEEEE
T ss_pred             -----CcEEEEEE--CCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc--ccCCCCCEEEE
Confidence                 89999999  79999999999999999999975433222111 1222233333332211110  11122345666


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  |+.|++||..    .+....+ .+|...|.+++|+|++++|++| .|+.|++||+.........        ..+
T Consensus       190 ~~~--d~~i~iwd~~----~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~~  254 (343)
T 2xzm_R          190 VGW--DGRLKVWNTN----FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE--------FDA  254 (343)
T ss_dssp             EET--TSEEEEEETT----TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE--------EEC
T ss_pred             EcC--CCEEEEEcCC----CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee--------ecC
Confidence            655  8999999953    2444444 7899999999999999999999 9999999999534433333        124


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|.+++|+|++ .+++++ .|+.|++||+.+++...  ...+..  ..........+|...+.+++|+|+|++|++|+
T Consensus       255 ~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  328 (343)
T 2xzm_R          255 GSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAP--VCTIEA--EPITKAEGQKGKNPQCTSLAWNALGKKLFAGF  328 (343)
T ss_dssp             SSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCS--EEECCC--CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred             CCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCc--eEEeec--CcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence            4569999999998 777654 57789999998764311  001111  00000111236778899999999999999997


Q ss_pred             -cCeEEEEEccC
Q 015290          347 -YMNLKLWDIRM  357 (409)
Q Consensus       347 -~~~v~iwd~~~  357 (409)
                       |+.|++|++.+
T Consensus       329 ~Dg~v~~w~~~~  340 (343)
T 2xzm_R          329 TDGVIRTFSFET  340 (343)
T ss_dssp             TTSEEEEEEEEE
T ss_pred             CCceEEEEEEEc
Confidence             49999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=250.75  Aligned_cols=292  Identities=17%  Similarity=0.211  Sum_probs=213.8

Q ss_pred             cCCCcEEEEEECCC---CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           30 QDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        30 ~h~~~v~~v~~~~~---~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .|.+.|++++|+|+   |++||+|+.||.|+|||+.+...                         .....+.+|.     
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~-----   86 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT-----   86 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS-----
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc-----
Confidence            48999999999998   69999999999999999987332                         1336778888     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC--CCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  184 (409)
                             +.|.+++|  +|++++|++++.|+.|++||+.+++......  .            ...+..+.+  ++++.+
T Consensus        87 -------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~~~  143 (368)
T 3mmy_A           87 -------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ--H------------DAPVKTIHWIKAPNYSC  143 (368)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C------------SSCEEEEEEEECSSCEE
T ss_pred             -------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceeecc--c------------cCceEEEEEEeCCCCCE
Confidence                   89999999  7899999999999999999999887665432  1            122333333  555666


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      ++++..  |+.|++||+.+.   +++..+ ..+ ..+.++.+.+  ..++++ .++.+.+|+++........+      .
T Consensus       144 l~~~~~--dg~i~vwd~~~~---~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------~  208 (368)
T 3mmy_A          144 VMTGSW--DKTLKFWDTRSS---NPMMVL-QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------E  208 (368)
T ss_dssp             EEEEET--TSEEEEECSSCS---SCSEEE-ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------C
T ss_pred             EEEccC--CCcEEEEECCCC---cEEEEE-ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------c
Confidence            666655  899999999874   344444 333 3566666654  467777 99999999998444433332      2


Q ss_pred             cCccCceEEEEEeCCCCCE----EEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          264 DDLTEVITSAEFHPIYCNL----LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~----l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      ..+...+.++.+.++. ..    +++++.||.|++||++.... ......+..|.. ........+|...|.+++|+|++
T Consensus       209 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~  285 (368)
T 3mmy_A          209 SPLKHQHRCVAIFKDK-QNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRS-NGTNTSAPQDIYAVNGIAFHPVH  285 (368)
T ss_dssp             CSCSSCEEEEEEEECT-TSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEE-C----CCCEEECCEEEEEECTTT
T ss_pred             ccccCCCceEEEcccC-CCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeec-ccccccccccccceEEEEEecCC
Confidence            2334455666666654 43    99999999999999987632 011233344221 11112233445589999999999


Q ss_pred             CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|++|+ |+.|++||+.+ ++++..+.+|...+               .+++|+|||++|++++.|+..
T Consensus       286 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~s~d~~~  339 (368)
T 3mmy_A          286 GTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPI---------------SACCFNHNGNIFAYASSYDWS  339 (368)
T ss_dssp             CCEEEEETTSCEEEEETTT-TEEEEECCCCSSCE---------------EEEEECTTSSCEEEEECCCST
T ss_pred             CEEEEEccCCeEEEEECCC-CcEEEEecCCCCCc---------------eEEEECCCCCeEEEEeccccc
Confidence            9999997 59999999986 88899998888775               699999999999999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-33  Score=253.59  Aligned_cols=250  Identities=15%  Similarity=0.206  Sum_probs=190.5

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...|++++|+|+|++||+|+.||.|+|||+.+++                           .+..+.+|.          
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~----------  165 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE----------  165 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence            3459999999999999999999999999998765                           467789999          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceeecccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEW  190 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  190 (409)
                        ..|.+++|  +|++++|++++.|++|++||+.+++........              ..+..+.+++ ++.+++.++.
T Consensus       166 --~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          166 --QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--------------DGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--------------SCEEEEEECSTTCCEEEEEET
T ss_pred             --CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC--------------CCcEEEEEECCCCCEEEEEcC
Confidence              89999999  799999999999999999999988765543321              1223333344 5566666665


Q ss_pred             cccceeEEEecCCcccceeeee---eccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec-----CCC
Q 015290          191 TENMATKIANVGNSVHARCQKV---YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-----KPS  261 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~-----~~~  261 (409)
                        |+.|++||+.+......+..   ...+|...|.+++|+|++++|++| .|+.|++||++.... ......     ...
T Consensus       228 --d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~~~~~~~  304 (393)
T 1erj_A          228 --DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-KSDSKTPNSGTCEV  304 (393)
T ss_dssp             --TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEE
T ss_pred             --CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-cccccCCCCCcceE
Confidence              89999999976432222110   114789999999999999999999 999999999973211 100000     001


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc----
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN----  337 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----  337 (409)
                      .+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++.    ...+             .+|...|.+++|++    
T Consensus       305 ~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~----~~~l-------------~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          305 TYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP----LLML-------------QGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             EEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE----EEEE-------------ECCSSCEEEEEECSSCTT
T ss_pred             EEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE----EEEE-------------CCCCCCEEEEEecCCcCc
Confidence            256799999999999999 9999999999999999988753    2233             44578899999876    


Q ss_pred             --CCCEEEEee-cCeEEEEEccC
Q 015290          338 --DGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       338 --~g~~l~sg~-~~~v~iwd~~~  357 (409)
                        ++++|++|+ |+.|+||++..
T Consensus       367 ~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          367 GPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCCEEEEECCCCcEEECcccc
Confidence              688999997 59999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=257.71  Aligned_cols=287  Identities=15%  Similarity=0.197  Sum_probs=213.0

Q ss_pred             ccccCCCcEEEEEECCCCC-EEEEEecCCeEEEEec----cCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC--
Q 015290           27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--   99 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   99 (409)
                      ....|.+.|++++|+|+++ +||+|+.||.|++|++    .+++..                 +...+.......+.+  
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  102 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-----------------WKLTIIAELRHPFALSA  102 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-----------------EEEEEEEEEECCCCCC-
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-----------------ccccccccccccccccc
Confidence            3445779999999999999 9999999999999999    665410                 000000111111222  


Q ss_pred             ----CCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCcee
Q 015290          100 ----HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (409)
Q Consensus       100 ----h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (409)
                          |.            +.|.+++|  +|++++|++++.|+.|++||. +++.......             ....+..
T Consensus       103 ~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~-------------~~~~v~~  154 (425)
T 1r5m_A          103 SSGKTT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGALLNVLNF-------------HRAPIVS  154 (425)
T ss_dssp             -----C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEEECC-------------CCSCEEE
T ss_pred             cccCCC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCCeeeeccC-------------CCccEEE
Confidence                44            79999999  789999999999999999994 4443333221             1233444


Q ss_pred             ccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccc---------------eeEEEeCCCCCeEEEe-cCC
Q 015290          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---------------INSISNNSDCETFVSA-DDL  239 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~~l~~~-~d~  239 (409)
                      +.+++++..++.+..  ++.+++||+.+.   +.+..+ ..+...               +.+++|+|++ .++++ .++
T Consensus       155 ~~~~~~~~~l~~~~~--d~~i~iwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g  227 (425)
T 1r5m_A          155 VKWNKDGTHIISMDV--ENVTILWNVISG---TVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKG  227 (425)
T ss_dssp             EEECTTSSEEEEEET--TCCEEEEETTTT---EEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGG
T ss_pred             EEECCCCCEEEEEec--CCeEEEEECCCC---cEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCC
Confidence            555666666666654  899999999763   444444 445544               8999999886 46677 999


Q ss_pred             eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCC
Q 015290          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (409)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  319 (409)
                      .|++||++ .+..+..       +..|...|.+++|+|++ ++|++++.|+.|++||+++++.    ...+         
T Consensus       228 ~i~~~d~~-~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~---------  285 (425)
T 1r5m_A          228 AIFVYQIT-EKTPTGK-------LIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----QNCF---------  285 (425)
T ss_dssp             CEEEEETT-CSSCSEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----SEEE---------
T ss_pred             eEEEEEcC-CCceeee-------eccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----ceEe---------
Confidence            99999999 5555554       56788999999999999 9999999999999999988653    1222         


Q ss_pred             cccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCe
Q 015290          320 KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  398 (409)
Q Consensus       320 ~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  398 (409)
                          .+|...+.+++|+|++ ++++++ ++.|++||+++ ++.+..+..|...+               .+++|+|++++
T Consensus       286 ----~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~  344 (425)
T 1r5m_A          286 ----YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQK  344 (425)
T ss_dssp             ----CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCE---------------EEEEECTTSSE
T ss_pred             ----cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccE---------------EEEEEcCCCCE
Confidence                2346789999999999 888886 59999999986 88888888887765               69999999999


Q ss_pred             EEEcccCCCC
Q 015290          399 FATGSYRRDN  408 (409)
Q Consensus       399 l~s~s~dg~i  408 (409)
                      |++++.||.|
T Consensus       345 l~~~~~dg~i  354 (425)
T 1r5m_A          345 YAVAFMDGQV  354 (425)
T ss_dssp             EEEEETTSCE
T ss_pred             EEEEECCCeE
Confidence            9999999976

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-34  Score=258.42  Aligned_cols=266  Identities=18%  Similarity=0.238  Sum_probs=198.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|+|+|++||+|+.|+.|++|++.+....                    .........+.+|.        
T Consensus       106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~~gh~--------  157 (380)
T 3iz6_a          106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR--------------------DGNMPVSRVLTGHK--------  157 (380)
T ss_dssp             CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC--------------------CCSSTTCCBCCCCS--------
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc--------------------cCCccceeeccCCC--------
Confidence            37889999999999999999999999999998764320                    00112345678888        


Q ss_pred             ceeccceEEEEEEecCC-CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceeec
Q 015290          110 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYH  187 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  187 (409)
                          +.|.++.|.  |+ +..|++++.|++|++||+.+++...........        .....+....+++ +..++++
T Consensus       158 ----~~v~~~~~~--~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          158 ----GYASSCQYV--PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS--------GHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             ----SCCCCCBCC--SSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS--------SCCSCEEEEEECSSSCCEEEE
T ss_pred             ----cceEEEEEe--cCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC--------CCccCeEEEEeecCCCCEEEE
Confidence                899999994  54 567999999999999999988776554221110        0111222333322 4456666


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  |+.|++||+...  ..++..+ .+|...|.+++|+|++++|++| .|++|++||++ .+..+..+.........+
T Consensus       224 gs~--D~~v~~wd~~~~--~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~-~~~~~~~~~~~~~~~~~~  297 (380)
T 3iz6_a          224 GSC--DTTVRLWDLRIT--SRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR-TGHQLQVYNREPDRNDNE  297 (380)
T ss_dssp             EET--TSCEEEEETTTT--CCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT-TTEEEEEECCCCSSSCCS
T ss_pred             EEC--CCeEEEEECCCC--CcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC-CCcEEEEecccccccccc
Confidence            665  999999999742  2445555 7899999999999999999999 99999999999 676666654332222334


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|++++|+|+| .+|++|+.||.|++||+..++..    ..+..         ...+|...|.+++|+|+|++|++|+
T Consensus       298 ~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~----~~~~~---------~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          298 LPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMV----LNLGT---------LQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             SCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEE----EEECC---------SCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             cCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceE----EEEec---------ccCCCCCceEEEEECCCCCEEEEee
Confidence            4568999999999 99999999999999999876532    11111         1235678999999999999999998


Q ss_pred             -cCeEEEEEccC
Q 015290          347 -YMNLKLWDIRM  357 (409)
Q Consensus       347 -~~~v~iwd~~~  357 (409)
                       |+.|++|++..
T Consensus       364 ~D~~i~iW~~~~  375 (380)
T 3iz6_a          364 WDKNLKIWAFSG  375 (380)
T ss_dssp             TTSCEEEEECCS
T ss_pred             CCCCEEEEecCC
Confidence             59999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-33  Score=255.28  Aligned_cols=270  Identities=13%  Similarity=0.158  Sum_probs=207.7

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCcccccccccee
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEI  112 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~  112 (409)
                      .+.+++|++  ..+++++.||.|++|++.+++.                           ...+.. |.           
T Consensus        95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~-----------  134 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDES-----------  134 (401)
T ss_dssp             TCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTT-----------
T ss_pred             eEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCC-----------
Confidence            355577775  4577888999999999988763                           233333 66           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ..|.+++|  +|++++|++++.||.|++||+.+++.......+ ...+.++.+              +...++.++.  
T Consensus       135 -~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--------------~~~~l~~~~~--  194 (401)
T 4aez_A          135 -TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH-QARVGCLSW--------------NRHVLSSGSR--  194 (401)
T ss_dssp             -CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEE--------------ETTEEEEEET--
T ss_pred             -CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEecCC-CCceEEEEE--------------CCCEEEEEcC--
Confidence             79999999  789999999999999999999988766554422 222222222              1234555544  


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      ++.|++||+....  .....+ .+|...|.+++|+|++++|++| .|+.|++||++ .+.....       +..|...|.
T Consensus       195 dg~i~i~d~~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~-------~~~~~~~v~  263 (401)
T 4aez_A          195 SGAIHHHDVRIAN--HQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFT-------KTNHNAAVK  263 (401)
T ss_dssp             TSEEEEEETTSSS--CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEE-------ECCCSSCCC
T ss_pred             CCCEEEEecccCc--ceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEE-------ecCCcceEE
Confidence            8999999997432  334444 7899999999999999999999 99999999999 5555554       567889999


Q ss_pred             EEEEeCCCCCEEEEEe--CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE--ee-
Q 015290          272 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--RD-  346 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s--g~-  346 (409)
                      +++|+|++..++++++  .|+.|++||+++++.    ...+..              ...+.+++|+|++++|++  |+ 
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVDA--------------GSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEEC--------------SSCEEEEEECSSSSEEEEEECTT
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEeC--------------CCcEEEEEECCCCCeEEEEeecC
Confidence            9999998867888865  799999999998754    233332              457999999999999998  43 


Q ss_pred             cCeEEEEEccCCCcceE--EEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 YMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++.|++||+.. ++...  .+.+|...+               .+++|+|+|++|++++.||.|
T Consensus       326 dg~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          326 DNNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             TCEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEE
T ss_pred             CCcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcE
Confidence            49999999985 44443  356777765               699999999999999999976

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=245.41  Aligned_cols=274  Identities=16%  Similarity=0.207  Sum_probs=207.0

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee--ecCCCccccccccce
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKSLE  111 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~~~  111 (409)
                      .+++|+||+++ +||+| .|++|+|||+.+++.                           +..  +.+|.          
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~---------------------------~~~~~~~~~~----------   67 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------------LQLLQMEQPG----------   67 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------------EEEEECCSTT----------
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------------EEEEEecCCC----------
Confidence            45789999986 78876 489999999998763                           333  44566          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..|++++|  +|++++|++|+.|++|++||+.+++.......+... +.+              .......++.+.. 
T Consensus        68 --~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-~~~--------------~~~~~~~l~s~~~-  127 (318)
T 4ggc_A           68 --EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGS--------------LSWNSYILSSGSR-  127 (318)
T ss_dssp             --CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-EEE--------------EEEETTEEEEEET-
T ss_pred             --CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-EEE--------------eecCCCEEEEEec-
Confidence              78999999  799999999999999999999999877665433211 111              1111234444443 


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                       ++.+++|+.....  ..+..+ .+|...+..+.+++++++++++ .|+.|++||++ .++.....   ......+...|
T Consensus       128 -~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~---~~~~~~~~~~v  199 (318)
T 4ggc_A          128 -SGHIHHHDVRVAE--HHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-PGEGGWVP---LQTFTQHQGAV  199 (318)
T ss_dssp             -TSEEEEEETTSSS--CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS-CBTTBSCC---SEEECCCCSCE
T ss_pred             -CCceEeeecCCCc--eeEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECC-CCcccccc---eeeecccCCce
Confidence             7788999886533  233333 7899999999999999999999 99999999998 33321110   01145677889


Q ss_pred             EEEEEeCCCCCEE--EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--
Q 015290          271 TSAEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  346 (409)
Q Consensus       271 ~~~~~~p~~~~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--  346 (409)
                      .++.++|++...+  ++++.++.|++||.+.....    ....              +...+..+.|+|++..+++++  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~~--------------~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVD--------------AHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEETTTTEEEEEECT
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----cccc--------------ceeeeeeeeecccccceEEEEEc
Confidence            9999999885554  45678899999999876531    1111              245789999999999887653  


Q ss_pred             -cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       |+.|++||+++ ++++..+.+|...+               ++++|+|||++|||||.||+|
T Consensus       262 ~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v  308 (318)
T 4ggc_A          262 AQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETL  308 (318)
T ss_dssp             TTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEE
T ss_pred             CCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeE
Confidence             49999999986 89999999999876               699999999999999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=269.53  Aligned_cols=257  Identities=12%  Similarity=0.052  Sum_probs=188.0

Q ss_pred             cccCCCcEEEEEECCCC---------CEEEE-------------------EecCCeEEEEeccCCcCCCCccchhhhhhh
Q 015290           28 ELQDVDIVSAIEFDKTG---------DYLAV-------------------GDRGGRVILFETVGGKNTPNQHISRSELEK   79 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~---------~~la~-------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   79 (409)
                      .+.+.+.|.+|+|+|++         ++||+                   ++.|++|+||++.+++.             
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~-------------  195 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL-------------  195 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-------------
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-------------
Confidence            44467889999999976         67766                   44778999999987653             


Q ss_pred             cccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEec----CCCCEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEM  155 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  155 (409)
                                .......+.+|.            +.|.+++|+|.    +++.+|++++.|++|++||+.++........
T Consensus       196 ----------~~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~  253 (524)
T 2j04_B          196 ----------HCVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK  253 (524)
T ss_dssp             ----------CEEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred             ----------CceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence                      111123456666            78999999542    2367999999999999999976532100000


Q ss_pred             CCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE
Q 015290          156 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS  235 (409)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  235 (409)
                      ..                                                 ..+...+ .+|...|.+++|++++ .|++
T Consensus       254 ~~-------------------------------------------------~~p~~~l-~~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          254 MC-------------------------------------------------EKPSLTL-SLADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             CC-------------------------------------------------CSCSEEE-CCTTTCEEEEEESSSS-EEEE
T ss_pred             ee-------------------------------------------------cCceEEE-EcCCCCEEEEEecCCC-eEEE
Confidence            00                                                 0112222 6789999999999864 7999


Q ss_pred             e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE--EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccc
Q 015290          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (409)
Q Consensus       236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  312 (409)
                      | .||+|++||++........       +.+|...|+++  +|+|+++++|++++.|++|++||+++++.    ...+..
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~----~~~~~~  351 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT----TKTTVS  351 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH----HCEEEE
T ss_pred             EeCCCEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc----cccccc
Confidence            9 9999999999833233333       57899999999  56777547899999999999999988653    122322


Q ss_pred             cccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEE
Q 015290          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (409)
                      |..           ...|.+++|+|+++.++++++ ++|++||++. +.++..+.+|...+               ++++
T Consensus       352 ~~~-----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~sva  404 (524)
T 2j04_B          352 RFR-----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TAIG  404 (524)
T ss_dssp             ECS-----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EEEE
T ss_pred             ccc-----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EEEE
Confidence            110           124789999999999998875 9999999986 77888888999876               6999


Q ss_pred             EcCCCCeEEEcccCCCC
Q 015290          392 VSGDGLHFATGSYRRDN  408 (409)
Q Consensus       392 ~spdg~~l~s~s~dg~i  408 (409)
                      |||+|++|++|+.||+|
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             CCSSCCBCEEEETTTEE
T ss_pred             eCCCCCeEEEEECCCEE
Confidence            99999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6e-33  Score=247.44  Aligned_cols=248  Identities=16%  Similarity=0.218  Sum_probs=193.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |...|.+++|+|+|.+||+|+.|+.+++|++......                     ........+.+|.         
T Consensus       105 ~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------~~~~~~~~~~~h~---------  154 (354)
T 2pbi_B          105 PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------NMAAKKKSVAMHT---------  154 (354)
T ss_dssp             SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC---------------------CSGGGCEEEEECS---------
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc---------------------cccccceeeeccC---------
Confidence            6778999999999999999999999999998754320                     0011234566788         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|.+++|  ++++..|++++.|++|++||+.+++.......+.. .+.++          ....++++..+++++.
T Consensus       155 ---~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~-~v~~~----------~~~~~~~g~~l~sgs~  218 (354)
T 2pbi_B          155 ---NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA-DVLCL----------DLAPSETGNTFVSGGC  218 (354)
T ss_dssp             ---SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEE----------EECCCSSCCEEEEEET
T ss_pred             ---CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-CeEEE----------EEEeCCCCCEEEEEeC
Confidence               89999999  78999999999999999999998877655442211 11111          1122234456666665


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        |+.+++||+.+   ++++..+ .+|...|.+++|+|++++|++| .|++|++||++ ....+..+.     ...+...
T Consensus       219 --Dg~v~~wd~~~---~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~-~~~~~~~~~-----~~~~~~~  286 (354)
T 2pbi_B          219 --DKKAMVWDMRS---GQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-ADREVAIYS-----KESIIFG  286 (354)
T ss_dssp             --TSCEEEEETTT---CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEEC-----CTTCCSC
T ss_pred             --CCeEEEEECCC---CcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEc-----CCCcccc
Confidence              99999999976   4566666 7899999999999999999999 99999999998 555444421     1233457


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      +.+++|+|++ .+|++|+.|+.|++||+.+++.    +..             +.+|...|++++|+|+|++|++|+. +
T Consensus       287 ~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~----~~~-------------l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          287 ASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSR----VSI-------------LFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEE-------------ECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             eeEEEEeCCC-CEEEEEECCCcEEEEECCCCce----EEE-------------EECCCCcEEEEEECCCCCEEEEEcCCC
Confidence            8999999999 9999999999999999987653    122             2446789999999999999999984 9


Q ss_pred             eEEEEE
Q 015290          349 NLKLWD  354 (409)
Q Consensus       349 ~v~iwd  354 (409)
                      .|+||+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6e-33  Score=286.67  Aligned_cols=249  Identities=16%  Similarity=0.256  Sum_probs=186.1

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|.+.|++++|+|+|++||+|+.||.|++||+.+++                           .+..+.+|.      
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~---------------------------~~~~~~~h~------  657 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE---------------------------KLLDIKAHE------  657 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEeccCC------
Confidence            34699999999999999999999999999999998876                           467788999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC--CCcee
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHG  185 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  185 (409)
                            +.|.+++|  +|++++|++++.|++|++||+.+++.......+.             ..+..+.+++  ...++
T Consensus       658 ------~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~l  716 (1249)
T 3sfz_A          658 ------DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-------------EQVNCCHFTNKSNHLLL  716 (1249)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-------------SCEEEEEECSSSSCCEE
T ss_pred             ------CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC-------------CcEEEEEEecCCCceEE
Confidence                  89999999  7999999999999999999999987766544221             2222333333  33345


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCC----
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP----  260 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~----  260 (409)
                      ++++.  |+.|++||+.+   +.+...+ .+|...|.+++|+|++++++++ .||.|++||+. .+.....+....    
T Consensus       717 ~sg~~--d~~v~vwd~~~---~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~  789 (1249)
T 3sfz_A          717 ATGSN--DFFLKLWDLNQ---KECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR-SANERKSINVKRFFLS  789 (1249)
T ss_dssp             EEEET--TSCEEEEETTS---SSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG-GTEEEEEEECCCCC--
T ss_pred             EEEeC--CCeEEEEECCC---cchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC-CCcccceecccccccc
Confidence            55544  89999999976   4555555 7899999999999999999999 99999999998 444333322110    


Q ss_pred             ---------------------------------------C-----cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          261 ---------------------------------------S-----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       261 ---------------------------------------~-----~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                                                             .     ...+|...+.+++|+|++ .++++++.||.|++||
T Consensus       790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWN  868 (1249)
T ss_dssp             ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEE
T ss_pred             cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEE
Confidence                                                   0     012677889999999999 9999999999999999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI  355 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~  355 (409)
                      +.++...    ..+             .+|...|.+++|+|+|++|++++. +.|++||+
T Consensus       869 ~~~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          869 IDSRLKV----ADC-------------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             TTTTEEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             cCCCcee----eec-------------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9876431    222             223445555555555555555543 55555553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-34  Score=262.67  Aligned_cols=277  Identities=17%  Similarity=0.176  Sum_probs=208.8

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      +.+++++|+|++++|++|+.||.|++||+.+.+.                           ...+..|.           
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---------------------------~~~~~~~~-----------   98 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---------------------------SKMLKRAD-----------   98 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET---------------------------TTTSCSCC-----------
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccce---------------------------eeEEecCC-----------
Confidence            3456899999999999999999999999987653                           12223332           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                        .+....|  ++++++|++++.|+.|++||+.+++.......             ....+..+.+++++.++++++.  
T Consensus        99 --~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~l~s~s~--  159 (420)
T 3vl1_A           99 --YTAVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-------------HVSEITKLKFFPSGEALISSSQ--  159 (420)
T ss_dssp             --EEEEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEETTS-------------SSSCEEEEEECTTSSEEEEEET--
T ss_pred             --ceEEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeeeccc-------------ccCccEEEEECCCCCEEEEEeC--
Confidence              3344455  79999999999999999999998876654322             1233445556666677777665  


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc--
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--  269 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--  269 (409)
                      |+.|++||+.+   .+++..+ .+|...|.+++|+|++++|+++ .|+.|++||++ .++.+..+...    ..+...  
T Consensus       160 d~~i~iwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~  230 (420)
T 3vl1_A          160 DMQLKIWSVKD---GSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVN  230 (420)
T ss_dssp             TSEEEEEETTT---CCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEE
T ss_pred             CCeEEEEeCCC---CcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCcc
Confidence            89999999976   3455555 7899999999999999999999 99999999999 66666654221    123334  


Q ss_pred             -------------------eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          270 -------------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       270 -------------------v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                                         +.+++|+|++ ++|++|+.||.|++||+++++..    ..+            ...|...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~------------~~~~~~~v  293 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQL------------PSKFTCSC  293 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEE------------CCTTSSCE
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEc------------ccccCCCc
Confidence                               4445557888 99999999999999999886532    111            12346789


Q ss_pred             eeeEeccCCC-EEEEeec-CeEEEEEccCCCcceEEEeccc-CcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          331 SDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       331 ~~~~~s~~g~-~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      .+++|+|+++ +|++|+. +.|++||+++...++..+..|. ..+               .++ +.+++++|++++.||+
T Consensus       294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v---------------~~~-~~~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI---------------NNV-YFAAGALFVSSGFDTS  357 (420)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------------EEE-EEETTEEEEEETTTEE
T ss_pred             eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------------eEE-EeCCCCEEEEecCCcc
Confidence            9999999998 9999875 9999999987445678888744 333               345 5668899999999987


Q ss_pred             C
Q 015290          408 N  408 (409)
Q Consensus       408 i  408 (409)
                      |
T Consensus       358 v  358 (420)
T 3vl1_A          358 I  358 (420)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-33  Score=245.60  Aligned_cols=253  Identities=14%  Similarity=0.226  Sum_probs=181.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|.+++|+|++++||+|+.|+.|+||++......                    ....+.+..+.+|.         
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~---------  107 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHE---------  107 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------CCCEEEEEEC------------
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCC---------
Confidence            8999999999999999999999999999998643210                    00224567788999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-e---eeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-K---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                         +.|.+++|  +|++++|++++.|++|++||+... .   .......             ....+..+.++++..+++
T Consensus       108 ---~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------h~~~v~~v~~~p~~~~l~  169 (330)
T 2hes_X          108 ---NEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-------------HSQDVKHVIWHPSEALLA  169 (330)
T ss_dssp             ----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-------------CSSCEEEEEECSSSSEEE
T ss_pred             ---CcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-------------CCCceEEEEECCCCCEEE
Confidence               89999999  799999999999999999999532 1   2222111             123344555667777777


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCC-------ceeeee
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-------QCFNIV  256 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~-------~~~~~~  256 (409)
                      +++.  |+.|++|+..... .+++..+ .+|...|.+++|+|+  +..|++| .|++|++||++...       ..... 
T Consensus       170 s~s~--D~~i~iW~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~-  244 (330)
T 2hes_X          170 SSSY--DDTVRIWKDYDDD-WECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI-  244 (330)
T ss_dssp             EEET--TSCEEEEEEETTE-EEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE-
T ss_pred             EEcC--CCeEEEEECCCCC-eeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee-
Confidence            7776  9999999986521 2455665 899999999999998  6789999 99999999997221       12222 


Q ss_pred             ecCCCcCcC-ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc-ceeeeE
Q 015290          257 DMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIK  334 (409)
Q Consensus       257 ~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~  334 (409)
                            +.+ |...|++++|+++  .+|++++.||.|++||..+++.     .....         .+.+|.. .|.+++
T Consensus       245 ------~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~-----~~~~~---------~~~~h~~~~v~~v~  302 (330)
T 2hes_X          245 ------LPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEW-----KVFAK---------RALCHGVYEINVVK  302 (330)
T ss_dssp             ------CCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEE-----EEEEE---------ESCTTTTSCEEEEE
T ss_pred             ------cccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCce-----EEEec---------cccccccceEEEEE
Confidence                  333 8899999999976  4799999999999999876531     00100         0123444 799999


Q ss_pred             ecc--CCCEEEEee-cCeEEEEEccC
Q 015290          335 FAN--DGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       335 ~s~--~g~~l~sg~-~~~v~iwd~~~  357 (409)
                      |+|  ++++|++|+ |+.|+|||+..
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC--
T ss_pred             EecCCCceEEEEecCCCcEEEEEecc
Confidence            999  789999987 49999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.5e-33  Score=275.73  Aligned_cols=277  Identities=15%  Similarity=0.161  Sum_probs=223.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|+|++++||+|+.||.|+|||+.++.                           .+..+.+|.        
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---------------------------~~~~~~~~~--------   55 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------------------------EVRSIQVTE--------   55 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------eEEEEecCC--------
Confidence            489999999999999999999999999999998766                           466788898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|.+++|  +|++++|++++.|+.|++||+.+++.......+             .+.+..+.+++++..++++.
T Consensus        56 ----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~  116 (814)
T 3mkq_A           56 ----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-------------PDYIRSIAVHPTKPYVLSGS  116 (814)
T ss_dssp             ----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECSSSSEEEEEE
T ss_pred             ----CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-------------CCCEEEEEEeCCCCEEEEEc
Confidence                89999999  689999999999999999999988766554322             23345556667777777666


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      .  ++.+++|++++.  ......+ .+|...|.+++|+| +++.++++ .||.|++||+. .+.....+      ...+.
T Consensus       117 ~--dg~i~vw~~~~~--~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~------~~~~~  184 (814)
T 3mkq_A          117 D--DLTVKLWNWENN--WALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG-QSTPNFTL------TTGQE  184 (814)
T ss_dssp             T--TSEEEEEEGGGT--SEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT-CSSCSEEE------ECCCT
T ss_pred             C--CCEEEEEECCCC--ceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcceeEE------ecCCC
Confidence            4  899999999753  1333444 78999999999999 78899999 99999999998 44444332      23445


Q ss_pred             CceEEEEEeC--CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          268 EVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       268 ~~v~~~~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ..+.+++|+|  ++ .+|++++.||.|++||+++++.    ...+             .+|...|.+++|+|++++|+++
T Consensus       185 ~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~-------------~~~~~~v~~~~~~~~~~~l~~~  246 (814)
T 3mkq_A          185 RGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATL-------------EGHMSNVSFAVFHPTLPIIISG  246 (814)
T ss_dssp             TCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEE----EEEE-------------ECCSSCEEEEEECSSSSEEEEE
T ss_pred             CCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEE-------------cCCCCCEEEEEEcCCCCEEEEE
Confidence            7899999999  88 9999999999999999988653    2222             3346789999999999999999


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC--eEEEcccCC
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFATGSYRR  406 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~s~s~dg  406 (409)
                      +. |.|++||+.+ ++.+..+..+...+               ++++|+|+|.  ++++++.++
T Consensus       247 ~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~~~~~  294 (814)
T 3mkq_A          247 SEDGTLKIWNSST-YKVEKTLNVGLERS---------------WCIATHPTGRKNYIASGFDNG  294 (814)
T ss_dssp             ETTSCEEEEETTT-CSEEEEECCSSSSE---------------EEEEECTTCGGGEEEEEETTE
T ss_pred             eCCCeEEEEECCC-CcEEEEeecCCCcE---------------EEEEEccCCCceEEEEEeCCC
Confidence            74 9999999986 78888888877654               6899999887  466666544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1e-32  Score=255.50  Aligned_cols=285  Identities=14%  Similarity=0.154  Sum_probs=211.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|+|++ +|++|+.||+|++||+.+++                           .+..+.+|.        
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~---------------------------~~~~~~~h~--------  203 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC---------------------------CTHVFEGHN--------  203 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc---------------------------EEEEECCCC--------
Confidence            499999999999988 99999999999999998776                           467788898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccc---------cccccccccCceeccCCC
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS---------SENTLLAEKNFMNEHNPP  180 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  180 (409)
                          +.|.+++|.|.+++.+|++++.|++|++||+.++...............         .+.........+... .+
T Consensus       204 ----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~  278 (464)
T 3v7d_B          204 ----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-SG  278 (464)
T ss_dssp             ----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE-EE
T ss_pred             ----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE-cC
Confidence                8999999977688899999999999999999876543321111000000         000000011111111 22


Q ss_pred             CCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecC
Q 015290          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (409)
                      ...+++.+..  ++.|++||+.+   .+++..+ .+|...|.+++|+|+++++++| .|+.|++||++ .+..+..    
T Consensus       279 ~~~~l~~~~~--d~~i~vwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~----  347 (464)
T 3v7d_B          279 HGNIVVSGSY--DNTLIVWDVAQ---MKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYT----  347 (464)
T ss_dssp             ETTEEEEEET--TSCEEEEETTT---TEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEE----
T ss_pred             CCCEEEEEeC--CCeEEEEECCC---CcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEE----
Confidence            3345555544  88999999976   5566666 7899999999999999999999 99999999998 6777766    


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                         +.+|...|.+++|+  + .+|++++.||.|++||++++..      .+..            .+...+..++|+|++
T Consensus       348 ---~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~------~~~~------------~~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          348 ---LQGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSR------KFSY------------HHTNLSAITTFYVSD  403 (464)
T ss_dssp             ---ECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE------EEEE------------ECTTCCCEEEEEECS
T ss_pred             ---EeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCce------eeee------------cCCCCccEEEEEeCC
Confidence               67899999999997  4 7899999999999999988642      1111            113567888999999


Q ss_pred             CEEEEeecCeEEEEEccCCCcceEE-EecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          340 QHLLSRDYMNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       340 ~~l~sg~~~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ++|++|+++.|++||+.+ ++++.. +..|...+               ++++|+ ++.++++++.||.
T Consensus       404 ~~l~~~~dg~i~iwd~~~-g~~~~~~~~~~~~~v---------------~~v~~~-~~~l~~~~~~~g~  455 (464)
T 3v7d_B          404 NILVSGSENQFNIYNLRS-GKLVHANILKDADQI---------------WSVNFK-GKTLVAAVEKDGQ  455 (464)
T ss_dssp             SEEEEEETTEEEEEETTT-CCEEESCTTTTCSEE---------------EEEEEE-TTEEEEEEEETTE
T ss_pred             CEEEEecCCeEEEEECCC-CcEEehhhccCCCcE---------------EEEEec-CCEEEEEEEeCCe
Confidence            999999999999999986 777664 44454443               689997 4445556666653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.2e-33  Score=247.57  Aligned_cols=280  Identities=12%  Similarity=0.067  Sum_probs=214.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +.+.|.+++|+|||++++++..++.+.+|......                           ......+|.         
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~h~---------   51 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA---------------------------RQINTLNHG---------   51 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE---------------------------EEEEEECCS---------
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc---------------------------ccceeccCC---------
Confidence            56789999999999999998877766666543322                           122334677         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|.+++|  +|++++|++++ |+.|++||+.++........        +........+..+.+++++..++.+..
T Consensus        52 ---~~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~  117 (337)
T 1gxr_A           52 ---EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--------LDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             ---SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE--------EECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             ---CceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceeeeec--------ccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence               89999999  79999999998 99999999987643221110        000012234445556666667776654


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        ++.+++|+++.... .....+ ..|...+.+++|+|++++++++ .|+.|++||++ .++....       +..|...
T Consensus       118 --d~~i~~~d~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~~~~~  185 (337)
T 1gxr_A          118 --ASTLSIWDLAAPTP-RIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHTDG  185 (337)
T ss_dssp             --SSEEEEEECCCC---EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSC
T ss_pred             --CCcEEEEECCCCCc-ceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eecccCc
Confidence              88999999987432 233333 6788999999999999999999 99999999998 6666655       5678899


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      +.+++|+|++ ++|++++.||.|++||+++++..    ..+.              +...+.+++|+|++++|++++. +
T Consensus       186 i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~~~~  246 (337)
T 1gxr_A          186 ASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec--------------CCCceEEEEECCCCCEEEEEcCCC
Confidence            9999999999 99999999999999999987531    2222              2467999999999999999975 9


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|++||++. ++ ...+..|...+               .+++|+|++++|++++.||.|
T Consensus       247 ~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i  289 (337)
T 1gxr_A          247 NVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             CEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEE
T ss_pred             cEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcE
Confidence            999999985 33 44666676654               699999999999999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=262.34  Aligned_cols=290  Identities=8%  Similarity=0.042  Sum_probs=195.8

Q ss_pred             cCCCcEEEEEECCC------CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        30 ~h~~~v~~v~~~~~------~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      .|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++....  .   ..+           ...++...+.+|.  
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~--~---~~~-----------~~~~p~~~l~~h~--  266 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV--H---VFK-----------MCEKPSLTLSLAD--  266 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS--S---EEE-----------CCCSCSEEECCTT--
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc--c---cce-----------eecCceEEEEcCC--
Confidence            46789999999997      5799999999999999998654210  0   000           0001234577888  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee-eeeccCCCcccccccccccccCceec--cCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNE--HNPP  180 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  180 (409)
                                ..|++++|  +++ ..|++|+.||+|++||+.++... .....+             ...+.++  .+++
T Consensus       267 ----------~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-------------~~~V~sv~~~~s~  320 (524)
T 2j04_B          267 ----------SLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-------------DSYILSVSTAYSD  320 (524)
T ss_dssp             ----------TCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSCSEEEECS-------------SSCEEEEEEECCT
T ss_pred             ----------CCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCceEEeecc-------------cccEEEEEEEcCC
Confidence                      89999999  554 48999999999999999865322 112111             1222232  3444


Q ss_pred             CC-ceeecccccccceeEEEecCCcccceeeeeecccccc--ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290          181 SF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       181 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (409)
                      .+ .++++++.  |+++++||+.+.   ++...+ .+|..  .|.+++|+|+++.++++ .|++|++||++ .+.++.. 
T Consensus       321 ~g~~~laS~S~--D~tvklWD~~~~---~~~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~-~~~~~~~-  392 (524)
T 2j04_B          321 FEDTVVSTVAV--DGYFYIFNPKDI---ATTKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR-AAFAVHP-  392 (524)
T ss_dssp             TSCCEEEEEET--TSEEEEECGGGH---HHHCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT-CTTCCEE-
T ss_pred             CCCeEEEEecc--CCeEEEEECCCC---Cccccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc-cccccee-
Confidence            44 66777766  999999999763   333333 34442  47899999999999998 99999999999 5555554 


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                            +.+|.+.|++++|+|++ ++|++|+.||+|++||+..+..     .....   ...     ..+...+.+++|+
T Consensus       393 ------l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~-----~~~~~---~~~-----~~~~~~v~~v~~s  452 (524)
T 2j04_B          393 ------LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLL-----HGIKN---SSA-----TQKSLRLWKWDYS  452 (524)
T ss_dssp             ------EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTT-----TCC--------------CCCCEEEECBCC
T ss_pred             ------eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhc-----ccccc---Ccc-----ceeeeEEEEeccC
Confidence                  56799999999999999 9999999999999999865321     11111   000     0012257899999


Q ss_pred             cCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC---eEEEcccCCCC
Q 015290          337 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYRRDN  408 (409)
Q Consensus       337 ~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~---~l~s~s~dg~i  408 (409)
                      |+|+.+.. .+ .+++|+....+..+..+.+|...+               .+++|+|++.   .||+|+.||+|
T Consensus       453 p~g~~~~~-~~-~~~~~~~~~~g~~~~~l~gh~~~V---------------~~Vafsp~~~~~~~lAsg~~~g~v  510 (524)
T 2j04_B          453 IKDDKYRI-DS-SYEVYPLTVNDVSKAKIDAHGINI---------------TCTKWNETSAGGKCYAFSNSAGLL  510 (524)
T ss_dssp             SSSCEEEE-CC-CCCCCC-------------CCCSC---------------CCEEECCSTTTTTEEEEECTTSEE
T ss_pred             CCCCeEEc-cC-CceecccccCCcceeeecCCCceE---------------EEEECCCCCCccHHHHhhccCceE
Confidence            99985533 22 233443322267788888998876               5999999964   99999999976

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.9e-32  Score=246.70  Aligned_cols=277  Identities=12%  Similarity=0.080  Sum_probs=203.8

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..+....|+|++++||+|+.||.|++||+.+++                           ....+.+|.           
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~-----------  139 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---------------------------QREIDQAHV-----------  139 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---------------------------EEEETTSSS-----------
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---------------------------eeeeccccc-----------
Confidence            556666889999999999999999999998665                           456678898           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       +.|.+++|  +|++++|++++.|++|++||+.+++.......+             ...+..+.+++++..+++++.  
T Consensus       140 -~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~l~s~~~--  201 (420)
T 3vl1_A          140 -SEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-------------RATVTDIAIIDRGRNVLSASL--  201 (420)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-------------SSCEEEEEEETTTTEEEEEET--
T ss_pred             -CccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-------------CCcEEEEEEcCCCCEEEEEcC--
Confidence             89999999  789999999999999999999988765544321             223344445556666666655  


Q ss_pred             cceeEEEecCCcccceeeeeec--ccc---------------------ccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290          193 NMATKIANVGNSVHARCQKVYP--HAH---------------------DFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~--~~~---------------------~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~  248 (409)
                      |+.+++||+.+.   +++..+.  ..+                     ...+.+++|+|++++|++| .||.|++||++ 
T Consensus       202 d~~v~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-  277 (420)
T 3vl1_A          202 DGTIRLWECGTG---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF-  277 (420)
T ss_dssp             TSCEEEEETTTT---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT-
T ss_pred             CCcEEEeECCCC---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC-
Confidence            899999999864   3333331  123                     3445556678999999999 99999999998 


Q ss_pred             CCceeeeeecCCCcCcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                      .+.....+      ...|...|.+++|+|++ . +|++|+.||.|++||+++++..   ...+..            .|.
T Consensus       278 ~~~~~~~~------~~~~~~~v~~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~------------~~~  335 (420)
T 3vl1_A          278 SKEQTIQL------PSKFTCSCNSLTVDGNN-ANYIYAGYENGMLAQWDLRSPECP---VGEFLI------------NEG  335 (420)
T ss_dssp             TCCEEEEE------CCTTSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSC---SEEEEE------------STT
T ss_pred             CCceeEEc------ccccCCCceeEEEeCCC-CCEEEEEeCCCeEEEEEcCCCcCc---hhhhhc------------cCC
Confidence            45444432      45688899999999999 6 9999999999999999886421   122222            134


Q ss_pred             cceeeeEeccCCCEEEEee-cCeEEEEEccCCCcc--------eEEEecccCcccccccccCCCCccceeeEEEcCCCC-
Q 015290          328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP--------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-  397 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-  397 (409)
                      ..+.++.+ +++++|++++ |+.|++||+....++        ...+..|...+               .+++|+|+++ 
T Consensus       336 ~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~  399 (420)
T 3vl1_A          336 TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAV---------------SQFCYVSDDES  399 (420)
T ss_dssp             SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCC---------------CEEEEECCSSS
T ss_pred             CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcce---------------EEEEEccCCCC
Confidence            57887755 5788999987 599999998752222        22233344433               6999999999 


Q ss_pred             --eEEEcccCCC
Q 015290          398 --HFATGSYRRD  407 (409)
Q Consensus       398 --~l~s~s~dg~  407 (409)
                        .|++++.+|.
T Consensus       400 ~g~l~a~g~~g~  411 (420)
T 3vl1_A          400 NGEVLEVGKNNF  411 (420)
T ss_dssp             SCEEEEEETTTE
T ss_pred             cceEEEEcCCce
Confidence              5666665654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=272.34  Aligned_cols=211  Identities=14%  Similarity=0.107  Sum_probs=162.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||.|+||+..+.+.                           ... ..|.       
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~~-~~~~-------   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VIK-LEDR-------   58 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EEE-CSSC-------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EEE-cCCC-------
Confidence            35899999999999999999999999999999876542                           222 2355       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  +| +++|++++.|++|++||+.+++......              ..+.+..+.+++++.+++.+
T Consensus        59 -----~~V~~l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V~~v~~sp~g~~l~sg  116 (902)
T 2oaj_A           59 -----SAIKEMRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKITSIDTDASLDWMLIG  116 (902)
T ss_dssp             -----CCEEEEEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCEEEEECCTTCSEEEEE
T ss_pred             -----CCEEEEEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCEEEEEECCCCCEEEEE
Confidence                 79999999  57 7799999999999999999887655432              11345566667777888877


Q ss_pred             cccccceeEEEecCCcccceeee-------eeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecC
Q 015290          189 EWTENMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (409)
                      ..  ++.|++||+++........       ..+.+|.+.|.+++|+|+ +..+++| .|+.| +||++ .+..+..+...
T Consensus       117 s~--dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~  192 (902)
T 2oaj_A          117 LQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYE  192 (902)
T ss_dssp             ET--TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCC
T ss_pred             cC--CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecc
Confidence            65  9999999998743211000       112678999999999996 4688888 99999 99999 66666554221


Q ss_pred             C-----------CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc
Q 015290          260 P-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (409)
Q Consensus       260 ~-----------~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~  301 (409)
                      .           .....|...|++++|+|+| .+|++++.||.|++||+++++
T Consensus       193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             BCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred             cCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence            0           0123456789999999999 999999999999999997654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.3e-32  Score=246.93  Aligned_cols=266  Identities=17%  Similarity=0.269  Sum_probs=212.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|...|.+++|  ++++|++|+.||.|++||..+++                           ....+.+|.        
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~--------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT--------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence            36678999887  78999999999999999998766                           467788999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|.+++|    ++++|++|+.||+|++||+.+++.......+ ...+            ....+++  ..+++++
T Consensus       174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v------------~~l~~~~--~~l~s~s  230 (435)
T 1p22_A          174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHH-CEAV------------LHLRFNN--GMMVTCS  230 (435)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCC-CSCE------------EEEECCT--TEEEEEE
T ss_pred             ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC-CCcE------------EEEEEcC--CEEEEee
Confidence                89999998    5779999999999999999988776554422 1112            2222221  2455554


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  |+.|++||+...........+ .+|...|.++++  +++++++| .|+.|++||++ .+..+..       +.+|..
T Consensus       231 ~--dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~-~~~~~~~-------~~~~~~  297 (435)
T 1p22_A          231 K--DRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS-TCEFVRT-------LNGHKR  297 (435)
T ss_dssp             T--TSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-TCCEEEE-------EECCSS
T ss_pred             C--CCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-cCcEEEE-------EcCCCC
Confidence            4  899999999875544444444 789999999999  78899999 99999999999 6666665       578889


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-  347 (409)
                      .|.++.|+  + .++++|+.||.|++||+++++.    ...+             .+|...|.+++|  ++++|++|+. 
T Consensus       298 ~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~----~~~~-------------~~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          298 GIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVL-------------EGHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEE-------------CCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             cEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCE----EEEE-------------eCCcCcEEEEEe--cCCEEEEEeCC
Confidence            99999995  5 7999999999999999998753    2333             335678999999  6889999974 


Q ss_pred             CeEEEEEccCCCc---------ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDST---------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |.|++||+.. +.         ++..+.+|...+               ++++|  ++.+|++|+.||+|
T Consensus       356 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~h~~~v---------------~~l~~--~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          356 GKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGRV---------------FRLQF--DEFQIVSSSHDDTI  407 (435)
T ss_dssp             SCEEEEEHHH-HTSTTSCTTTTEEEEECCCSSCC---------------CCEEE--CSSCEEECCSSSEE
T ss_pred             CcEEEEECCC-CCCccccccchheeeccCCCCCe---------------EEEEe--CCCEEEEEeCCCEE
Confidence            9999999975 33         678888888876               58888  78899999999976

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-31  Score=234.34  Aligned_cols=249  Identities=21%  Similarity=0.337  Sum_probs=199.9

Q ss_pred             CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccc
Q 015290           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (409)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (409)
                      .|.+.....+.+|.            +.|++++|  +|++++|++++.|+.|++|++.+++.......+           
T Consensus        10 ~~~~~~~~~~~gh~------------~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-----------   64 (312)
T 4ery_A           10 KPNYALKFTLAGHT------------KAVSSVKF--SPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----------   64 (312)
T ss_dssp             CCCCEEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----------
T ss_pred             CCCceeEEEEcccC------------CcEEEEEE--CCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-----------
Confidence            45667788899999            89999999  799999999999999999999888766554322           


Q ss_pred             ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~  246 (409)
                        ...+..+.+++++.++++++.  |+.|++||+++   .+++..+ .+|...|.+++|+|++++|++| .|+.|++||+
T Consensus        65 --~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  136 (312)
T 4ery_A           65 --KLGISDVAWSSDSNLLVSASD--DKTLKIWDVSS---GKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  136 (312)
T ss_dssp             --SSCEEEEEECTTSSEEEEEET--TSEEEEEETTT---CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             --CCceEEEEEcCCCCEEEEECC--CCEEEEEECCC---CcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence              123444556666777777765  89999999976   4455555 7899999999999999999999 9999999999


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      + .+..+..       +..|...|.+++|+|++ ++|++++.||.|++||+++++..    ..+..            .+
T Consensus       137 ~-~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~  191 (312)
T 4ery_A          137 K-TGKCLKT-------LPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLID------------DD  191 (312)
T ss_dssp             T-TCCEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC------------SS
T ss_pred             C-CCEEEEE-------ecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEec------------cC
Confidence            8 6666655       57788999999999999 99999999999999999886531    21111            12


Q ss_pred             ccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE-cCCCCeEEEccc
Q 015290          327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSY  404 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~s~s~  404 (409)
                      ...+..++|+|++++|++++. +.|++||+++ ++++..+.+|......             ....+ .+++.+|++|+.
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~  257 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSE  257 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECC
Confidence            457899999999999999974 9999999986 8888888888765321             12344 467899999999


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      ||.|
T Consensus       258 dg~i  261 (312)
T 4ery_A          258 DNLV  261 (312)
T ss_dssp             TSCE
T ss_pred             CCEE
Confidence            9976

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-33  Score=269.85  Aligned_cols=247  Identities=16%  Similarity=0.205  Sum_probs=194.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|++++||+|+.||.|+|||+.++.                         .+....+.+|.       
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------------------------~~~~~~l~~h~-------   53 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE-------   53 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-------------------------EEEEEEECCCS-------
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-------------------------CccceeccCCc-------
Confidence            3599999999999999999999999999999997542                         23567889998       


Q ss_pred             cceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          109 SLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                           +.|++++|  +++  +++|++++.||+|++||+.+++....                                  
T Consensus        54 -----~~V~~l~~--s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~----------------------------------   92 (753)
T 3jro_A           54 -----GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQI----------------------------------   92 (753)
T ss_dssp             -----SCEEEEEE--CCTTSCSEEEEEETTSCEEEEEEETTEEEEE----------------------------------
T ss_pred             -----CceEEEEe--cCCCCCCEEEEEeCCCeEEEEECCCCccccc----------------------------------
Confidence                 89999999  555  89999999999999999987653222                                  


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                                              ..+ .+|...|.+++|+|+  ++.+++| .||.|++||++........      .+
T Consensus        93 ------------------------~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~  141 (753)
T 3jro_A           93 ------------------------AVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------II  141 (753)
T ss_dssp             ------------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EE
T ss_pred             ------------------------ccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------Ee
Confidence                                    111 578899999999999  9999999 9999999999833222111      15


Q ss_pred             cCccCceEEEEEeC-------------CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          264 DDLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       264 ~~~~~~v~~~~~~p-------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                      .+|...|.+++|+|             ++ .+|++|+.||.|++||++++........             .+.+|...|
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------~~~~h~~~V  207 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLES-------------TLEGHSDWV  207 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEE-------------EECCCSSCE
T ss_pred             ecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeee-------------eecCCCCcE
Confidence            67889999999999             46 8999999999999999987642111111             234567899


Q ss_pred             eeeEeccC---CCEEEEee-cCeEEEEEccCCCc----ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          331 SDIKFAND---GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       331 ~~~~~s~~---g~~l~sg~-~~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      .+++|+|+   +++|++|+ |+.|++||+.....    .+.....|...+               ++++|+|+|++|++|
T Consensus       208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~  272 (753)
T 3jro_A          208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEE
Confidence            99999999   89999997 49999999986211    111122233333               699999999999999


Q ss_pred             ccCCCC
Q 015290          403 SYRRDN  408 (409)
Q Consensus       403 s~dg~i  408 (409)
                      +.||.|
T Consensus       273 s~Dg~I  278 (753)
T 3jro_A          273 GGDNKV  278 (753)
T ss_dssp             CSSSCE
T ss_pred             cCCCEE
Confidence            999976

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-31  Score=256.97  Aligned_cols=285  Identities=13%  Similarity=0.163  Sum_probs=194.3

Q ss_pred             cCCC---cEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-c---CCC
Q 015290           30 QDVD---IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-Q---SHE  101 (409)
Q Consensus        30 ~h~~---~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~  101 (409)
                      .|..   .|++++|+|+ +++|++++.||.|++||+.+++                           .+..+ .   +|.
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~~~  253 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---------------------------FLKYIEDDQEPVQ  253 (615)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC---------------------------EEEECCBTTBCCC
T ss_pred             ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC---------------------------EeEEecccccccC
Confidence            3777   9999999999 9999999999999999998776                           34555 4   777


Q ss_pred             ccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCC---CcccccccccccccCceeccC
Q 015290          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH---FPFVSSENTLLAEKNFMNEHN  178 (409)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  178 (409)
                                  ..|.+++|  + ++.+|++++.|+.|++||+.+++.........   ...+.++.+.           
T Consensus       254 ------------~~v~~~~~--~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  307 (615)
T 1pgu_A          254 ------------GGIFALSW--L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-----------  307 (615)
T ss_dssp             ------------SCEEEEEE--S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-----------
T ss_pred             ------------CceEEEEE--c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-----------
Confidence                        89999999  7 99999999999999999999887766554331   1111111111           


Q ss_pred             CCCCceeecccccccceeEEEecCCcccceeeeee--------------------------------ccccccceeEEEe
Q 015290          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY--------------------------------PHAHDFNINSISN  226 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~l~~  226 (409)
                        ....++.+..  ++.+++||+..   .+++..+                                ..+|...|.+++|
T Consensus       308 --~~~~l~~~~~--~g~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~  380 (615)
T 1pgu_A          308 --GNGRIISLSL--DGTLNFYELGH---DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN  380 (615)
T ss_dssp             --ETTEEEEEET--TSCEEEEETTE---EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred             --CCCeEEEEEC--CCCEEEEECCC---CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence              1122222221  33444444332   1111111                                0123333444444


Q ss_pred             CCCCCeEEEe-cCCeEEEEEccCC--------------------------------------------------------
Q 015290          227 NSDCETFVSA-DDLRINLWNLEIS--------------------------------------------------------  249 (409)
Q Consensus       227 ~~~~~~l~~~-~d~~i~lwd~~~~--------------------------------------------------------  249 (409)
                       +++..++++ .|+.|++||+...                                                        
T Consensus       381 -~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  459 (615)
T 1pgu_A          381 -SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV  459 (615)
T ss_dssp             -CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEE
T ss_pred             -CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEE
Confidence             223344444 4444444443310                                                        


Q ss_pred             ------CceeeeeecCC-----CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC
Q 015290          250 ------DQCFNIVDMKP-----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (409)
Q Consensus       250 ------~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  318 (409)
                            ...+..++...     ..+.+|...|++++|+|++ ++|++++.||.|++||+.+++..    ..+..      
T Consensus       460 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~----~~~~~------  528 (615)
T 1pgu_A          460 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVK----TSRWA------  528 (615)
T ss_dssp             EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----ECCSC------
T ss_pred             EEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcce----eEeec------
Confidence                  00011111110     2257789999999999999 99999999999999999887641    22211      


Q ss_pred             CcccccccccceeeeEecc----------CCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290          319 SKSFFTEIIASISDIKFAN----------DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (409)
Q Consensus       319 ~~~~~~~~~~~i~~~~~s~----------~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (409)
                            .|...|++++|+|          ++++|++++. +.|++||+....+++..+.+|...+               
T Consensus       529 ------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v---------------  587 (615)
T 1pgu_A          529 ------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV---------------  587 (615)
T ss_dssp             ------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE---------------
T ss_pred             ------CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce---------------
Confidence                  1568999999999          9999999985 9999999986347888888888776               


Q ss_pred             eeEEEcCCCCeEEEcccCCCC
Q 015290          388 FECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       388 ~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++++|+||++ |++++.||+|
T Consensus       588 ~~l~~s~~~~-l~s~~~d~~v  607 (615)
T 1pgu_A          588 NNLLWETPST-LVSSGADACI  607 (615)
T ss_dssp             EEEEEEETTE-EEEEETTSCE
T ss_pred             EEEEEcCCCC-eEEecCCceE
Confidence            6999999999 9999999976

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.2e-33  Score=287.16  Aligned_cols=282  Identities=17%  Similarity=0.208  Sum_probs=224.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +...|.+++|+|+++++++|+.+|.|++|++.++.                           ....+.+|.         
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~---------------------------~~~~~~~h~--------- 1003 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR---------------------------VFSSGVGHK--------- 1003 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS---------------------------CEEECCCCS---------
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc---------------------------eeeecccCC---------
Confidence            45689999999999999999999999999998776                           356678898         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|.+++|  +|++++|++++.|+.|++||+.+++......  ...            .+....+.++..+ ..++ 
T Consensus      1004 ---~~v~~l~~--s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~------------~v~~~~~~~~~~l-~~~~- 1062 (1249)
T 3sfz_A         1004 ---KAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFLQA--HQE------------TVKDFRLLQDSRL-LSWS- 1062 (1249)
T ss_dssp             ---SCCCCEEE--CSSSSCEEEECSSSBEEEEETTTTEEECCBC--CSS------------CEEEEEECSSSEE-EEEE-
T ss_pred             ---CceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCceEEEec--CCC------------cEEEEEEcCCCcE-EEEE-
Confidence               89999999  7999999999999999999999887654321  111            2222223333333 3333 


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                       .++.+++||+.+   +++...+ .+|...|.+++|+|++++++++ .|+.|++||+. .+..+..       +.+|...
T Consensus      1063 -~dg~v~vwd~~~---~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~-~~~~~~~-------l~~h~~~ 1129 (1249)
T 3sfz_A         1063 -FDGTVKVWNVIT---GRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD-LLSPLHE-------LKGHNGC 1129 (1249)
T ss_dssp             -SSSEEEEEETTT---TCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS-SSSCSBC-------CCCCSSC
T ss_pred             -CCCcEEEEECCC---CceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-Ccceeee-------eccCCCc
Confidence             288999999976   4455555 7899999999999999999999 99999999998 5555544       6789999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCe
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~  349 (409)
                      |++++|+|++ ++|++++.||.|++||+.+++..    ..+..    ........+|...|++++|+|||++|++++ |.
T Consensus      1130 v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~~~----~~~~~----~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~ 1199 (1249)
T 3sfz_A         1130 VRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQLL----HSCAP----ISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GY 1199 (1249)
T ss_dssp             EEEEEECSSS-SEEEEEETTSCCCEEESSSSCCC----CCCCC----CC-------CCSCCCEEEECTTSSCEEEES-SS
T ss_pred             EEEEEECCCC-CEEEEEeCCCEEEEEECCCCceE----EEecc----ccccccccccCceEEEEEECCCCCEEEECC-Ce
Confidence            9999999999 99999999999999999987642    11110    001112345678999999999999999887 99


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |++||+.+ ++.+..+..|...+               .+++|+|||++|++++.||.|
T Consensus      1200 v~vwd~~~-g~~~~~~~~~~~~i---------------~~~~~s~dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A         1200 LKWWNVAT-GDSSQTFYTNGTNL---------------KKIHVSPDFRTYVTVDNLGIL 1242 (1249)
T ss_dssp             EEEBCSSS-CBCCCCCCCSSCCC---------------CCCEECSSSCCEEEECTTCCE
T ss_pred             EEEEECCC-CceeeeeeccCCcc---------------cEEEECCCCCEEEEecCCcEE
Confidence            99999986 78888887777665               589999999999999999976

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-31  Score=246.90  Aligned_cols=274  Identities=14%  Similarity=0.254  Sum_probs=208.4

Q ss_pred             ccCCCc-EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~-v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .+|.+. +.++.+  ++++|++|+.||.|++||+.+++                           .+..+.+|.      
T Consensus       118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------  162 (464)
T 3v7d_B          118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------  162 (464)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred             cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence            347766 566666  56799999999999999998776                           467788999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            +.|.+++|  ++++ .|++++.|++|++||+.+++.......+ ...+.++.+.          ..++..++++
T Consensus       163 ------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~----------~~~~~~~l~s  222 (464)
T 3v7d_B          163 ------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIV----------EYKNIKYIVT  222 (464)
T ss_dssp             ------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEE----------ESSSCEEEEE
T ss_pred             ------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC-CCccEEEEEe----------cCCCCCEEEE
Confidence                  89999999  6777 9999999999999999988776554422 2222222222          1234455666


Q ss_pred             ccccccceeEEEecCCcccce--------------------eeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290          188 LEWTENMATKIANVGNSVHAR--------------------CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~  246 (409)
                      ++.  |+.+++||+.......                    ....+ .+|...+.++  +++++++++| .|+.|++||+
T Consensus       223 ~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~  297 (464)
T 3v7d_B          223 GSR--DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV  297 (464)
T ss_dssp             EET--TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEET
T ss_pred             EcC--CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence            654  8999999998643221                    13333 7788888877  5678999999 9999999999


Q ss_pred             cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      + .+..+..       +.+|...|.+++|+|++ +++++|+.||.|++||+++++.    ...+             .+|
T Consensus       298 ~-~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~-------------~~h  351 (464)
T 3v7d_B          298 A-QMKCLYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTL-------------QGH  351 (464)
T ss_dssp             T-TTEEEEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEE-------------CCC
T ss_pred             C-CCcEEEE-------ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEE-------------eCC
Confidence            8 6666666       57899999999999999 9999999999999999988753    2333             345


Q ss_pred             ccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          327 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ...|.+++|+  +++|++++ |+.|++||+.+ +.....+. +...+               ..++|+|++++|++|+ |
T Consensus       352 ~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~-d  411 (464)
T 3v7d_B          352 TALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNLS---------------AITTFYVSDNILVSGS-E  411 (464)
T ss_dssp             SSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTCC---------------CEEEEEECSSEEEEEE-T
T ss_pred             CCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCCc---------------cEEEEEeCCCEEEEec-C
Confidence            6789999998  57899887 59999999985 44444443 33322               4789999999999998 7


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      |.|
T Consensus       412 g~i  414 (464)
T 3v7d_B          412 NQF  414 (464)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-31  Score=264.03  Aligned_cols=172  Identities=10%  Similarity=0.113  Sum_probs=120.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|...|.+++|+| |++||+++.|++|+|||+.+++                           .+..+. |.       
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~---------------------------~~~~~~-~~-------   98 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK---------------------------VLTTVF-VP-------   98 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS---------------------------EEEEEE-CS-------
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc---------------------------EEEEEc-CC-------
Confidence            34788999999999 8899999999999999998765                           234443 44       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC-Cceeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  187 (409)
                           +.|++++|  +|++++|++|+.||+|++||+.+++.............  .......+.+..+.+++. ...++.
T Consensus        99 -----~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~--~~~~~h~~~V~sl~~sp~~~~~l~~  169 (902)
T 2oaj_A           99 -----GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS--FFPAARLSPIVSIQWNPRDIGTVLI  169 (902)
T ss_dssp             -----SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHH--TCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred             -----CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccc--cccccCCCCeEEEEEccCCCCEEEE
Confidence                 68999999  79999999999999999999998875321100000000  000011123334444443 234554


Q ss_pred             ccccccceeEEEecCCcccceeeeeec-----------------cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (409)
                      +..  ++.+ +||++..   ++++.+.                 ..|...|.+++|+|+|++|++| .|+.|++||++ .
T Consensus       170 g~~--dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~-~  242 (902)
T 2oaj_A          170 SYE--YVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN-S  242 (902)
T ss_dssp             ECS--SCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT-T
T ss_pred             EeC--CCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-C
Confidence            443  8899 9999873   3444431                 1235789999999999999999 99999999997 4


Q ss_pred             Cce
Q 015290          250 DQC  252 (409)
Q Consensus       250 ~~~  252 (409)
                      ++.
T Consensus       243 g~~  245 (902)
T 2oaj_A          243 GHM  245 (902)
T ss_dssp             CCE
T ss_pred             CcE
Confidence            443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.5e-32  Score=249.23  Aligned_cols=258  Identities=17%  Similarity=0.242  Sum_probs=197.0

Q ss_pred             cccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ...|.+.|++++|+|+ +.+||+|+.||.|++|++.......                 ......+....+.+|.     
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~-----------------~~~~~~~~~~~~~~h~-----  181 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP-----------------EPSGECQPDLRLRGHQ-----  181 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC-----------------CTTCCCCCSEEEECCS-----
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc-----------------CccccCCCcEEecCCC-----
Confidence            4558999999999997 7899999999999999998632100                 0000123556778888     


Q ss_pred             cccceeccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                             ..|.+++|  +|++. +|++++.||.|++|++..+......                                
T Consensus       182 -------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------------------  220 (430)
T 2xyi_A          182 -------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHRV--------------------------------  220 (430)
T ss_dssp             -------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGGE--------------------------------
T ss_pred             -------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCce--------------------------------
Confidence                   89999999  68887 9999999999999999874221000                                


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCC--ceeeeeecCCC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS  261 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~  261 (409)
                                           ......+ .+|...|.+++|+| ++..|+++ .|+.|++||++...  .....      
T Consensus       221 ---------------------~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~------  272 (430)
T 2xyi_A          221 ---------------------IDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT------  272 (430)
T ss_dssp             ---------------------EECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE------
T ss_pred             ---------------------eccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE------
Confidence                                 0111222 67899999999999 67788888 99999999999432  33333      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-  340 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-  340 (409)
                       +..|...|++++|+|+++.+|++|+.||.|++||+++....   +..             +..|...|.+++|+|+++ 
T Consensus       273 -~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~-------------~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          273 -VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHS-------------FESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             -EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEE-------------EECCSSCEEEEEECSSCTT
T ss_pred             -eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEE-------------eecCCCCEEEEEECCCCCC
Confidence             46788999999999998458999999999999999874321   122             234577999999999995 


Q ss_pred             EEEEee-cCeEEEEEccCCC-------------cceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcccC
Q 015290          341 HLLSRD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYR  405 (409)
Q Consensus       341 ~l~sg~-~~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~d  405 (409)
                      +|++++ |+.|+|||+...+             +.+..+.+|...+               .+++|+|+++ +|++++.|
T Consensus       336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETT
T ss_pred             EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECC
Confidence            577776 5999999997522             4556666676654               6999999999 89999999


Q ss_pred             CCC
Q 015290          406 RDN  408 (409)
Q Consensus       406 g~i  408 (409)
                      |.|
T Consensus       401 g~i  403 (430)
T 2xyi_A          401 NIM  403 (430)
T ss_dssp             SEE
T ss_pred             CCE
Confidence            975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.2e-31  Score=254.16  Aligned_cols=288  Identities=11%  Similarity=0.113  Sum_probs=221.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|.+.|++++|+|+|++||+++ ++.|+||++.++..                       ..+....+.+|.       
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~-------   63 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG-------   63 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence            35889999999999999999998 88999999987611                       011467789998       


Q ss_pred             cceeccc-eEEEEEEecC--CCCEEEEEeCCCeEEEEEcCCc------eeeeeeccCCCcccccccccccccCceeccCC
Q 015290          109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (409)
Q Consensus       109 ~~~~~~~-v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (409)
                           +. |.+++|  +|  ++++|++++.|++|++||+.++      .......+.           .....+....++
T Consensus        64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s  125 (615)
T 1pgu_A           64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-----------VLAGPISDISWD  125 (615)
T ss_dssp             -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-----------CCSSCEEEEEEC
T ss_pred             -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-----------cccccEEEEEEe
Confidence                 88 999999  78  9999999999999999999755      222221111           112344555566


Q ss_pred             CCCceeeccccccc--ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeee
Q 015290          180 PSFAHGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNI  255 (409)
Q Consensus       180 ~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~  255 (409)
                      +++.+++.+....+  +.+++|+.     .+.+..+ .+|...|.+++|+|+++ .++++ .|+.|++||+. ..+....
T Consensus       126 ~~~~~l~~~~~~~~~~~~v~~~d~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~  198 (615)
T 1pgu_A          126 FEGRRLCVVGEGRDNFGVFISWDS-----GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS  198 (615)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTT-----CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE
T ss_pred             CCCCEEEEeccCCCCccEEEEEEC-----CCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee
Confidence            67777776665322  58888883     3455555 78999999999999998 78888 99999999998 6666665


Q ss_pred             eecCCCcCcCccC---ceEEEEEeCC-CCCEEEEEeCCCeEEEEeCCCccccccccccc-cccccccCCcccccccccce
Q 015290          256 VDMKPSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       256 ~~~~~~~~~~~~~---~v~~~~~~p~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i  330 (409)
                             +.+|..   .|.+++|+|+ + ++|++++.||.|++||+++++..    ..+ ..          ...|...|
T Consensus       199 -------~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v  256 (615)
T 1pgu_A          199 -------DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGI  256 (615)
T ss_dssp             -------ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCE
T ss_pred             -------ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCce
Confidence                   567888   9999999999 8 99999999999999999887642    222 10          01456789


Q ss_pred             eeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+++|+ ++++|++++. +.|++||+++ ++.+..+..+.....           ..+.++.|+ ++.+|++++.||.|
T Consensus       257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~l~~~~~~g~i  321 (615)
T 1pgu_A          257 FALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLG-----------NQQVGVVAT-GNGRIISLSLDGTL  321 (615)
T ss_dssp             EEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGG-----------GCEEEEEEE-ETTEEEEEETTSCE
T ss_pred             EEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCccc-----------CceeEEEeC-CCCeEEEEECCCCE
Confidence            999999 9999999975 9999999986 788888887742211           011477775 89999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.1e-30  Score=238.63  Aligned_cols=266  Identities=14%  Similarity=0.248  Sum_probs=192.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |.+.|.+++|+  +++|++|+.||.|++||+.+++                           .+..+.+|.         
T Consensus       158 h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~---------  199 (445)
T 2ovr_B          158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE---------------------------CIHTLYGHT---------  199 (445)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS---------
T ss_pred             CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc---------------------------EEEEECCCC---------
Confidence            55555555554  3455555555555555555443                           456667777         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|.++.|  +  ++.+++++.|++|++||+.+++.......+. ..+.++.+              ++..++.+..
T Consensus       200 ---~~v~~~~~--~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~--------------~~~~l~~~~~  257 (445)
T 2ovr_B          200 ---STVRCMHL--H--EKRVVSGSRDATLRVWDIETGQCLHVLMGHV-AAVRCVQY--------------DGRRVVSGAY  257 (445)
T ss_dssp             ---SCEEEEEE--E--TTEEEEEETTSEEEEEESSSCCEEEEEECCS-SCEEEEEE--------------CSSCEEEEET
T ss_pred             ---CcEEEEEe--c--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc-ccEEEEEE--------------CCCEEEEEcC
Confidence               78888888  2  4578888888889999888776655443221 11222211              2334444443


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        ++.+++||+.+   .+++..+ .+|...|.+++|  ++.+++++ .|+.|++||++ .+..+..       +.+|...
T Consensus       258 --dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------~~~~~~~  321 (445)
T 2ovr_B          258 --DFMVKVWDPET---ETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE-TGNCIHT-------LTGHQSL  321 (445)
T ss_dssp             --TSCEEEEEGGG---TEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCCSC
T ss_pred             --CCEEEEEECCC---CcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC-CCCEEEE-------EcCCccc
Confidence              88999999876   4566665 789999999999  78899999 99999999998 6666665       5778888


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      +.++.++  + .+|++|+.||.|++||+++++.    ...+..          ...|...|.+++|+  +++|++|+. |
T Consensus       322 v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~----------~~~~~~~v~~~~~~--~~~l~s~~~dg  382 (445)
T 2ovr_B          322 TSGMELK--D-NILVSGNADSTVKIWDIKTGQC----LQTLQG----------PNKHQSAVTCLQFN--KNFVITSSDDG  382 (445)
T ss_dssp             EEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECS----------TTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             EEEEEEe--C-CEEEEEeCCCeEEEEECCCCcE----EEEEcc----------CCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence            8888875  4 7899999999999999988753    233332          12346789999996  579999874 9


Q ss_pred             eEEEEEccCCCcceEEEe-----cccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          349 NLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      .|++||+.+ ++.+..+.     ++...+               ++++|+|++.+||+|+.||+
T Consensus       383 ~v~iwd~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          383 TVKLWDLKT-GEFIRNLVTLESGGSGGVV---------------WRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEEETTT-CCEEEEEEECTTGGGTCEE---------------EEEEECSSEEEEEEECSSSS
T ss_pred             eEEEEECCC-CceeeeeeccccCCCCceE---------------EEEEecCCEEEEEEcccCCC
Confidence            999999986 78887773     344443               79999999999999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4e-31  Score=240.24  Aligned_cols=244  Identities=14%  Similarity=0.147  Sum_probs=191.0

Q ss_pred             cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+|.+.|++++|+| ++++||+|+.||.|+|||+.++...                    ....+.+..+.+|.     
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~-----  131 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT-----  131 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS-----
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC-----
Confidence            346999999999999 9999999999999999999876421                    00112456778898     


Q ss_pred             cccceeccceEEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                             ..|.+++|  +|++ .+|++++.|+.|++||+.+++......                               
T Consensus       132 -------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------  171 (402)
T 2aq5_A          132 -------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------------------------  171 (402)
T ss_dssp             -------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred             -------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------------------------
Confidence                   89999999  6887 699999999999999998876543310                               


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                  ..+|...|.+++|+|++++|+++ .|+.|++||++ .+..+..+      ..
T Consensus       172 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~------~~  216 (402)
T 2aq5_A          172 ----------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEK------DR  216 (402)
T ss_dssp             ----------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEE------EC
T ss_pred             ----------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeee------cc
Confidence                                        04688899999999999999999 99999999999 56665552      15


Q ss_pred             CccCc-eEEEEEeCCCCCEEEEE---eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       265 ~~~~~-v~~~~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      .|.+. +.++.|+|++ .+|++|   +.|+.|++||+++++..   ......            .|...+.+++|+|+++
T Consensus       217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~------------~~~~~v~~~~~s~~~~  280 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LSLQEL------------DTSSGVLLPFFDPDTN  280 (402)
T ss_dssp             SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SEEEEC------------CCCSSCEEEEEETTTT
T ss_pred             CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ceEEec------------cCCCceeEEEEcCCCC
Confidence            66655 8999999999 999999   79999999999886531   111111            2246799999999999


Q ss_pred             EEE-Eee-cCeEEEEEccCCCcc-eEEEeccc--CcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          341 HLL-SRD-YMNLKLWDIRMDSTP-VATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       341 ~l~-sg~-~~~v~iwd~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +|+ +|+ |+.|++||+.. +++ +..+..+.  ..+               .+++|+|++.++++++
T Consensus       281 ~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s~~  332 (402)
T 2aq5_A          281 IVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVNKC  332 (402)
T ss_dssp             EEEEEETTCSCEEEEEECS-STTCEEEEEEECCSSCC---------------SEEEECCGGGSCGGGT
T ss_pred             EEEEEEcCCCeEEEEEecC-CCcceEeecccccCCcc---------------cceEEecccccceecc
Confidence            986 454 59999999986 553 66666554  333               5999999999887654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-31  Score=239.74  Aligned_cols=259  Identities=12%  Similarity=0.136  Sum_probs=193.1

Q ss_pred             CCCcEEEEEECCC----CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        31 h~~~v~~v~~~~~----~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++                           .+..+.+|.     
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~-----  115 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG-----  115 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC-----
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC-----
Confidence            6788999999998    6799999999999999998766                           466788898     


Q ss_pred             cccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                             ..|.+++|  +| ++.+|++++.|+.|++||+.+++........          ......+..+.+++++..+
T Consensus       116 -------~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l  176 (366)
T 3k26_A          116 -------NAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV----------EGHRDEVLSADYDLLGEKI  176 (366)
T ss_dssp             -------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEECST----------TSCSSCEEEEEECTTSSEE
T ss_pred             -------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc----------ccccCceeEEEECCCCCEE
Confidence                   89999999  67 8999999999999999999988766554210          0122334455556666677


Q ss_pred             ecccccccceeEEEecCCcccceee------------------------eeeccccccceeEEEeCCCCCeEEEe-cCCe
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQ------------------------KVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~  240 (409)
                      +.+..  ++.+++||+........+                        ......|...|.+++|+  +++++++ .|+.
T Consensus       177 ~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~  252 (366)
T 3k26_A          177 MSCGM--DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA  252 (366)
T ss_dssp             EEEET--TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE
T ss_pred             EEecC--CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE
Confidence            76665  899999999863321110                        01113489999999998  7799999 9999


Q ss_pred             EEEEEccCCCceeeeeecC------CCcCcCccCceEEEEEeCC--CCCEEEEEeCCCeEEEEeCCCccccccccccccc
Q 015290          241 INLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (409)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  312 (409)
                      |++||++........+...      ...+..|...|++++|+|+  + ++|++|+.||.|++||+++++........+..
T Consensus       253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  331 (366)
T 3k26_A          253 IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH  331 (366)
T ss_dssp             EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred             EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence            9999998332211000000      0125678888999999999  8 99999999999999999987542211122222


Q ss_pred             cccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      |           .|...|.+++|+|++++|++++. +.|++||+.
T Consensus       332 ~-----------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          332 H-----------KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             T-----------TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             c-----------ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            1           12578999999999999999975 999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.5e-31  Score=254.51  Aligned_cols=255  Identities=17%  Similarity=0.301  Sum_probs=186.8

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+|...|.+++|+|++++|++|+.||.|+|||+.++.                           ....+.+|.      
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~---------------------------~~~~~~~h~------  472 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV---------------------------STRRFVGHT------  472 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS------
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---------------------------ceeEEeCCC------
Confidence            34699999999999999999999999999999998765                           456788999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc--CCCcccccccccccccCceeccCCCCC--c
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM--DHFPFVSSENTLLAEKNFMNEHNPPSF--A  183 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  183 (409)
                            ..|.+++|  +|++++|++++.|++|++||............  .+...            +..+.++++.  .
T Consensus       473 ------~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~------------v~~~~~~~~~~~~  532 (694)
T 3dm0_A          473 ------KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW------------VSCVRFSPNTLQP  532 (694)
T ss_dssp             ------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC------------EEEEEECSCSSSC
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc------------EEEEEEeCCCCcc
Confidence                  89999999  79999999999999999999865543322211  11111            2222233332  3


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                      .+++++.  |+.|++||+..   .++...+ .+|...|++++|+|++++|++| .|+.|++||++ .+..+..       
T Consensus       533 ~l~s~s~--d~~v~vwd~~~---~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~-~~~~~~~-------  598 (694)
T 3dm0_A          533 TIVSASW--DKTVKVWNLSN---CKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA-EGKKLYS-------  598 (694)
T ss_dssp             EEEEEET--TSCEEEEETTT---CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT-TTEEEEC-------
T ss_pred             eEEEEeC--CCeEEEEECCC---CcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCceEEE-------
Confidence            4555554  89999999976   3455555 7899999999999999999999 99999999998 5665544       


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC------CcccccccccceeeeEec
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG------SKSFFTEIIASISDIKFA  336 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~s  336 (409)
                      +. +...+.+++|+|++ .+|++++ ++.|++||+++++..    ..+..+.....      .......+...+++++|+
T Consensus       599 ~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s  671 (694)
T 3dm0_A          599 LE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIV----EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS  671 (694)
T ss_dssp             CB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEECCCCC----------------CCCCEEEEEEC
T ss_pred             ec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCCh----hhhccccccccccccccccccCCceeEEeeeEEEc
Confidence            22 34679999999998 7777665 566999999987642    22211100000      000011122347899999


Q ss_pred             cCCCEEEEee-cCeEEEEEcc
Q 015290          337 NDGQHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       337 ~~g~~l~sg~-~~~v~iwd~~  356 (409)
                      |+|++|++|+ ||.|+|||+.
T Consensus       672 pdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          672 ADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCEEEEEcCCCeEEEEecc
Confidence            9999999997 4999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-30  Score=229.53  Aligned_cols=253  Identities=17%  Similarity=0.268  Sum_probs=186.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...|.+++|+|++++|++|+.|+.|++|+......                           ......+.       
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~---------------------------~~~~~~~~-------  128 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---------------------------TRRFVGHT-------  128 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce---------------------------eeeecCCC-------
Confidence            34899999999999999999999999999999887652                           34445555       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..+..+.+  ++++.+|++++.|+.+++||+................+..+.          ....+...+++++
T Consensus       129 -----~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~~~~~~s~  191 (340)
T 4aow_A          129 -----KDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR----------FSPNSSNPIIVSC  191 (340)
T ss_dssp             -----SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE----------ECSCSSSCEEEEE
T ss_pred             -----CceeEEEE--eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE----------EccCCCCcEEEEE
Confidence                 67888888  789999999999999999998766544332222222111111          1112223334444


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      +  .++.+++||+..   .+++..+ .+|...|++++|+|++++|++| .|+.|++||++ ....+..+       . +.
T Consensus       192 ~--~d~~i~i~d~~~---~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~-------~-~~  256 (340)
T 4aow_A          192 G--WDKLVKVWNLAN---CKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-EGKHLYTL-------D-GG  256 (340)
T ss_dssp             E--TTSCEEEEETTT---TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT-TTEEEEEE-------E-CS
T ss_pred             c--CCCEEEEEECCC---CceeeEe-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec-cCceeeee-------c-CC
Confidence            3  388999999976   4555555 7899999999999999999999 99999999999 66665552       2 34


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      ..+.++.|+|++ . +++++.|+.|++||++++...    ..+..    ........+|...|++++|+|+|++|++|+ 
T Consensus       257 ~~v~~~~~~~~~-~-~~~~~~d~~i~iwd~~~~~~~----~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          257 DIINALCFSPNR-Y-WLCAATGPSIKIWDLEGKIIV----DELKQ----EVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             SCEEEEEECSSS-S-EEEEEETTEEEEEETTTTEEE----EEECC----C-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             ceEEeeecCCCC-c-eeeccCCCEEEEEECCCCeEE----Eeccc----cceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence            679999999986 5 556677999999999886531    11111    111223456788999999999999999997 


Q ss_pred             cCeEEEEEccC
Q 015290          347 YMNLKLWDIRM  357 (409)
Q Consensus       347 ~~~v~iwd~~~  357 (409)
                      |+.|+|||+++
T Consensus       327 Dg~v~iW~~~t  337 (340)
T 4aow_A          327 DNLVRVWQVTI  337 (340)
T ss_dssp             TSCEEEEEEEC
T ss_pred             CCEEEEEeCCC
Confidence            49999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=243.30  Aligned_cols=261  Identities=8%  Similarity=-0.013  Sum_probs=197.2

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...|.+++|+|||+++|+++.|++|+  |....+                              .+.+|.          
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~----------   52 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS----------   52 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence            47899999999999999999999999  644333                              347888          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..|.+++|  +|+|       .++.+.+|+.....   ....            .....+..+.++|++..++.++. 
T Consensus        53 --~~v~~V~F--sPdg-------~~~~~~~~~~~~~~---~~~~------------~~~~~V~~vawSPdG~~LAs~s~-  105 (588)
T 2j04_A           53 --KNLFHVKE--FPLE-------FENKLDFELAQQNG---LLNS------------QPVCYPRVCKPSPIDDWMAVLSN-  105 (588)
T ss_dssp             --GGTEEEEE--ECCC-------CCCTTTTSCCCSSC---SSTT------------SCSCCEEEEEECSSSSCEEEEET-
T ss_pred             --ccEEEEEE--CCCC-------CcceEEEEeCCCce---Eeec------------CCCCcEEEEEECCCCCEEEEEeC-
Confidence              89999999  6888       45655555543222   2111            11456778888899999998887 


Q ss_pred             ccceeEEEecCCcccceeeeeecccccc-----ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc-------eeeeeec
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQ-------CFNIVDM  258 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~-------~~~~~~~  258 (409)
                       +|.+++|+.+.     ++..+ . |..     .+.+++|||+|++|++| .||+|++||+. .+.       .+..+..
T Consensus       106 -dg~V~iwd~~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~-~~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A          106 -NGNVSVFKDNK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR-KNSENTPEFYFESSIRL  176 (588)
T ss_dssp             -TSCEEEEETTE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC-CCTTTCCCCEEEEEEEC
T ss_pred             -CCcEEEEeCCc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC-CCccccccceeeeeeec
Confidence             99999999643     44444 4 554     49999999999999999 99999999998 443       2333211


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  338 (409)
                      .   ..+|...|.+++|+|+|   +++++.|+.|++||+..+... .....+.            .+|...|.+++|+  
T Consensus       177 ~---~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~------------~~h~~~V~svaFs--  235 (588)
T 2j04_A          177 S---DAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ------------NASRRKITDLKIV--  235 (588)
T ss_dssp             S---CTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE------------CCCSSCCCCEEEE--
T ss_pred             c---cccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec------------ccccCcEEEEEEE--
Confidence            1   36688999999999986   888899999999999876520 0001121            1346789999999  


Q ss_pred             CCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE--cCCCCeEEEcccCCC
Q 015290          339 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYRRD  407 (409)
Q Consensus       339 g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~l~s~s~dg~  407 (409)
                      |+.||+++++.|++||+.. ++......+|...+               .+++|  +||+..|+++++||+
T Consensus       236 g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          236 DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             TTEEEEECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE
T ss_pred             CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC
Confidence            6899999889999999974 44433333788776               58999  999999999999886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.1e-30  Score=255.38  Aligned_cols=243  Identities=18%  Similarity=0.257  Sum_probs=193.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|++++|+|++++||+|+.||.|++||+.+++                           .+..+.+|.        
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---------------------------~~~~~~~~~--------   97 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---------------------------KVVDFEAHP--------   97 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC--------
Confidence            489999999999999999999999999999998776                           466788898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-eeeeeeccCCCcccccccccccccCceeccCCC-CCceeec
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYH  187 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  187 (409)
                          +.|++++|  +|++++|++++.|++|++||+.++ ........ ..            ..+..+.+++ ++..++.
T Consensus        98 ----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~------------~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           98 ----DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HE------------HFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             ----SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-CS------------SCEEEEEEETTEEEEEEE
T ss_pred             ----CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-CC------------CcEEEEEEEcCCCCEEEE
Confidence                89999999  799999999999999999999876 33333221 12            2233334444 4455555


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC--CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      +..  ++.|++||+....   ....+...+...+.+++|+|  ++.+++++ .||.|++||++ .+.....       +.
T Consensus       159 ~~~--dg~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~  225 (814)
T 3mkq_A          159 GCL--DRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LE  225 (814)
T ss_dssp             EET--TSEEEEEETTCSS---CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EE
T ss_pred             EeC--CCeEEEEECCCCc---ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------Ec
Confidence            554  8999999997633   33333245558899999999  89999999 99999999998 6666655       57


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC--EE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HL  342 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l  342 (409)
                      +|...|.+++|+|++ .+|++++.||.|++||+.+++.    ...+..             |...+.+++|+|+|+  ++
T Consensus       226 ~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~-------------~~~~v~~~~~~~~~~~~~~  287 (814)
T 3mkq_A          226 GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNV-------------GLERSWCIATHPTGRKNYI  287 (814)
T ss_dssp             CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEECC-------------SSSSEEEEEECTTCGGGEE
T ss_pred             CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEeec-------------CCCcEEEEEEccCCCceEE
Confidence            788999999999999 9999999999999999988653    122222             356899999999997  57


Q ss_pred             EEeecCeEEEEEccC
Q 015290          343 LSRDYMNLKLWDIRM  357 (409)
Q Consensus       343 ~sg~~~~v~iwd~~~  357 (409)
                      +++.++.+.+|++..
T Consensus       288 ~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          288 ASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EEEETTEEEEEECSC
T ss_pred             EEEeCCCEEEEEcCC
Confidence            788888899999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-30  Score=238.57  Aligned_cols=245  Identities=9%  Similarity=-0.007  Sum_probs=178.2

Q ss_pred             cceEEEEEEecCCCCEE-EEEeCCCeEEEEEcC--CceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      +.|.+++|  +|++++| ++++.|+.|++||+.  +++........           .....+..+.+++++.+++.+..
T Consensus       103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B          103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----------CFSKRPNAISIAEDDTTVIIADK  169 (450)
T ss_dssp             CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----------ECSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----------cCCCCceEEEEcCCCCEEEEEeC
Confidence            68999999  7999996 888999999999998  66655443211           11123445556667777777755


Q ss_pred             cccceeEEEecCCcccce-eeeeeccccccceeEEEeCCC---CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          191 TENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                        ++.+++|++....... +...+ .+|...|.+++|+|+   +++|++| .|+.|++||++ .+..+..+      +.+
T Consensus       170 --~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~------~~~  239 (450)
T 2vdu_B          170 --FGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKW------LFG  239 (450)
T ss_dssp             --TSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEE------CCC
T ss_pred             --CCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeee------ecC
Confidence              8899999997754443 33344 689999999999999   9999999 99999999998 55555443      568


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccc-c--------cC---Ccccccccccceeee
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-S--------HG---SKSFFTEIIASISDI  333 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~--------~~---~~~~~~~~~~~i~~~  333 (409)
                      |...|.+++|+ ++ .+|++++.|+.|++||+++++..    ..+..+.. .        +.   ...........+.++
T Consensus       240 h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          240 HKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             CSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             CCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            99999999999 88 99999999999999999987642    22221100 0        00   000001224578999


Q ss_pred             EeccCCCEEEEee-c-CeEEEEEc--cCCC---cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          334 KFANDGQHLLSRD-Y-MNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       334 ~~s~~g~~l~sg~-~-~~v~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      +|+|++++|++++ . +.|++|++  .. +   +.+..+..+ ..+               .+++|+|++.++++++.
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEECCT
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEEecc
Confidence            9999999999886 4 99999999  43 4   566677776 332               69999997655555554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=7.6e-32  Score=243.83  Aligned_cols=257  Identities=9%  Similarity=-0.022  Sum_probs=170.5

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..+....+++++.+||+|+.|++|+|||..+++..                      ....+..+.+|.           
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~-----------  136 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH-----------  136 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS-----------
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC-----------
Confidence            33444445556778999999999999999887531                      223455688999           


Q ss_pred             ccceEEEEEEec------CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          113 EEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       113 ~~~v~~l~~~~s------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                       +.|++|+|.|.      .++++|++++.|++|+|||+.++.....                                  
T Consensus       137 -~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~----------------------------------  181 (393)
T 4gq1_A          137 -NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA----------------------------------  181 (393)
T ss_dssp             -SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE----------------------------------
T ss_pred             -CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee----------------------------------
Confidence             89999999641      2788999999999999999976643221                                  


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecC-----
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK-----  259 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-----  259 (409)
                                                + ..|...+.+++|+|++. +|++| .|++|++||++. ++........     
T Consensus       182 --------------------------~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          182 --------------------------G-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEENSQTELVKN  233 (393)
T ss_dssp             --------------------------E-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC----------CSC
T ss_pred             --------------------------e-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-CcccccccccCCccc
Confidence                                      1 46778899999999874 78888 999999999983 3222111000     


Q ss_pred             -------------CCcCcCccCceEEEEEe-CCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc-----
Q 015290          260 -------------PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----  320 (409)
Q Consensus       260 -------------~~~~~~~~~~v~~~~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----  320 (409)
                                   .....+|...+.++.|+ |++ +.|++++.|+.+++||+..++..    ..+..|.......     
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~  308 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN  308 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence                         01134677889999987 788 99999999999999999876532    2222211110000     


Q ss_pred             -ccccccccceeeeEecc--CCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC
Q 015290          321 -SFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (409)
Q Consensus       321 -~~~~~~~~~i~~~~~s~--~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  396 (409)
                       .....+. ......|+|  ++.++++|+ |+.|+|||+.+ ++....+.+|...+               ++++|+|||
T Consensus       309 ~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG  371 (393)
T 4gq1_A          309 VQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDG  371 (393)
T ss_dssp             EEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTS
T ss_pred             cccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCC
Confidence             0011112 223344444  344666776 49999999986 77777777787765               699999999


Q ss_pred             CeEEEcccCCC
Q 015290          397 LHFATGSYRRD  407 (409)
Q Consensus       397 ~~l~s~s~dg~  407 (409)
                      ++||++++||.
T Consensus       372 ~~LA~as~~Gv  382 (393)
T 4gq1_A          372 SHLAIATEGSV  382 (393)
T ss_dssp             SEEEEEESSEE
T ss_pred             CEEEEEeCCCe
Confidence            99999999885

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.1e-31  Score=233.76  Aligned_cols=269  Identities=13%  Similarity=0.098  Sum_probs=196.5

Q ss_pred             cccCCCcEEEEEECCC---CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           28 ELQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~---~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      ..+|...|++++|+|+   +++|++|+.||.|++||+.+++.                          .+..+.+|.   
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~---  111 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------------PVYSVKGHK---  111 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------------CSEEECCCS---
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------------cEEEEEecc---
Confidence            3468999999999998   79999999999999999987652                          356678898   


Q ss_pred             cccccceeccceEEEEEEe----cCCCCEEEEEeCCCeEEEEEcCCce-eeeeeccCCC---cccccccccccccCceec
Q 015290          105 DYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHF---PFVSSENTLLAEKNFMNE  176 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~----s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  176 (409)
                               ..|.++.|.+    ++++++|++++.|+.|++||+.++. ..........   ..+.++        .+..
T Consensus       112 ---------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~  174 (357)
T 3i2n_A          112 ---------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV--------AFGN  174 (357)
T ss_dssp             ---------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE--------EEEC
T ss_pred             ---------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE--------EEEe
Confidence                     8999997753    5899999999999999999998875 3333221111   011111        1122


Q ss_pred             cCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC---CCCeEEEe-cCCeEEEEEccCCCce
Q 015290          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQC  252 (409)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~lwd~~~~~~~  252 (409)
                      .++++..+++.+..  ++.|++||+++..   ....  ..|...|.+++|+|   ++++++++ .||.|++||++ .+..
T Consensus       175 ~~~~~~~~l~~~~~--d~~i~i~d~~~~~---~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~  246 (357)
T 3i2n_A          175 AYNQEERVVCAGYD--NGDIKLFDLRNMA---LRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR-TQHP  246 (357)
T ss_dssp             CCC-CCCEEEEEET--TSEEEEEETTTTE---EEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE-EEET
T ss_pred             ccCCCCCEEEEEcc--CCeEEEEECccCc---eeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc-CCCc
Confidence            25566677777765  8899999998743   2222  56888999999999   89999999 99999999998 4433


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeCCCcccccccccccccc------ccccCCcccccc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDA------AESHGSKSFFTE  325 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  325 (409)
                      ...+...  .+.+|...|++++|+|++ . +|++++.||.|++||++.+....    .....      .........+.+
T Consensus       247 ~~~~~~~--~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          247 TKGFASV--SEKAHKSTVWQVRHLPQN-RELFLTAGGAGGLHLWKYEYPIQRS----KKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             TTEEEEE--EEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEEEECCSCC------CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             ccceeee--ccCCCcCCEEEEEECCCC-CcEEEEEeCCCcEEEeecCCCcccc----cccCCCCccccccccceeecccc
Confidence            3321100  134799999999999999 6 89999999999999998754210    00000      000011233567


Q ss_pred             cccceeeeEeccCCCEEE-Eee-cCeEEEEEccC
Q 015290          326 IIASISDIKFANDGQHLL-SRD-YMNLKLWDIRM  357 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~-sg~-~~~v~iwd~~~  357 (409)
                      |...|.+++|+|++++|+ +++ |+.|++||+.+
T Consensus       320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            888999999999999998 677 59999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.7e-30  Score=238.01  Aligned_cols=290  Identities=10%  Similarity=0.127  Sum_probs=184.5

Q ss_pred             CcEEEEEECCCC--CEEEEEecCCeEEEEeccCCcCCCCccchh---hhhhhcccccccCCCce---------eeeee-e
Q 015290           33 DIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISR---SELEKQMDFTSTSHPEY---------RYKTE-F   97 (409)
Q Consensus        33 ~~v~~v~~~~~~--~~la~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~~~-~   97 (409)
                      +.|++++|+|++  .+|++++.||.|++||+.++..........   ..+...........|..         ..... .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999998  799999999999999997643200000000   00000000000000100         11112 3


Q ss_pred             cCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-eeeeeeccCCCcccccccccccccCceec
Q 015290           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (409)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (409)
                      .+|.            ..|.+++|  +|++++|+++ .|+.|++||+... .......                      
T Consensus       174 ~~h~------------~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~----------------------  216 (447)
T 3dw8_B          174 NAHT------------YHINSISI--NSDYETYLSA-DDLRINLWHLEITDRSFNIVD----------------------  216 (447)
T ss_dssp             SCCS------------SCCCEEEE--CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE----------------------
T ss_pred             cCCC------------cceEEEEE--cCCCCEEEEe-CCCeEEEEECCCCCceeeeee----------------------
Confidence            5677            89999999  7899999998 7999999999843 2222111                      


Q ss_pred             cCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCce--
Q 015290          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC--  252 (409)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~--  252 (409)
                                              +.      + .. +.+|...|.+++|+|++ ++|++| .|+.|++||++ .+..  
T Consensus       217 ------------------------~~------~-~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~  263 (447)
T 3dw8_B          217 ------------------------IK------P-AN-MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR-ASALCD  263 (447)
T ss_dssp             ------------------------CC------C-SS-GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT-TCSSSC
T ss_pred             ------------------------cc------c-cc-ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc-CCcccc
Confidence                                    00      0 00 26789999999999998 999999 99999999998 4443  


Q ss_pred             --eeeeecCCCcCcCccC------------ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC-cccccccccccccccccc
Q 015290          253 --FNIVDMKPSNMDDLTE------------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESH  317 (409)
Q Consensus       253 --~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  317 (409)
                        ...       +..|..            .|.+++|+|++ ++|++++. +.|++||++. ++.    +..+..|....
T Consensus       264 ~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~----~~~~~~~~~~~  330 (447)
T 3dw8_B          264 RHSKL-------FEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRP----VETYQVHEYLR  330 (447)
T ss_dssp             TTCEE-------ECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSC----SCCEESCGGGT
T ss_pred             ceeeE-------eccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccc----cceeecccccc
Confidence              344       344544            89999999999 99999998 9999999987 442    24444421100


Q ss_pred             CCc-cccc-ccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCccccccc-----------------
Q 015290          318 GSK-SFFT-EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------------  377 (409)
Q Consensus       318 ~~~-~~~~-~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------  377 (409)
                      ... ..+. .....+..++|+|++++|++|+. +.|++||+.+ ++.+ .+..+.........                 
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT-KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEI  408 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT-CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC-Ccce-eeeecccccccccccCCccccccCCcccccc
Confidence            000 0000 00012345999999999999975 9999999985 5544 45544432110000                 


Q ss_pred             -ccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          378 -LYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       378 -~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                       ....+....|..++|+|+|.+||+++.++.
T Consensus       409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~  439 (447)
T 3dw8_B          409 SVDSLDFNKKILHTAWHPKENIIAVATTNNL  439 (447)
T ss_dssp             EGGGCCTTSCCCEEEECSSSSEEEEECSSCE
T ss_pred             cccccccCCceeEEEECCCCCEEEEEeccee
Confidence             000011123468999999999999998763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-30  Score=226.22  Aligned_cols=213  Identities=16%  Similarity=0.278  Sum_probs=165.9

Q ss_pred             cccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           28 ELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..+|.+.|++++|++  ++++||+|+.||+|+|||+.+++.                         ..+..+.+|.    
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-------------------------~~~~~~~~h~----   99 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-------------------------SQIAVHAVHS----   99 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-------------------------CCCEEECCCS----
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-------------------------EEEEEeecCC----
Confidence            346999999999986  489999999999999999987642                         1345577888    


Q ss_pred             ccccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                              ..|.+++|  +|+  +.+|++++.|++|++||+.++.....                               
T Consensus       100 --------~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-------------------------------  138 (297)
T 2pm7_B          100 --------ASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTSP-------------------------------  138 (297)
T ss_dssp             --------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-------------------------------
T ss_pred             --------CceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCceee-------------------------------
Confidence                    89999999  555  88999999999999999976521100                               


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-------------CCeEEEe-cCCeEEEEEccCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-------------CETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~~-~d~~i~lwd~~~~  249 (409)
                                                 .. +.+|...|.+++|+|+             +++|++| .|++|++||++..
T Consensus       139 ---------------------------~~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          139 ---------------------------II-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             ---------------------------EE-EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETT
T ss_pred             ---------------------------ee-eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence                                       01 1578889999999997             5789999 9999999999833


Q ss_pred             Cc---eeeeeecCCCcCcCccCceEEEEEeCCC--CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccc
Q 015290          250 DQ---CFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (409)
Q Consensus       250 ~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (409)
                      ..   ....       +.+|...|.+++|+|++  ..+|++++.|++|++||++....... ...+.           ..
T Consensus       191 ~~~~~~~~~-------l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~-~~~~~-----------~~  251 (297)
T 2pm7_B          191 AQTYVLEST-------LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK-KTLLK-----------EE  251 (297)
T ss_dssp             TTEEEEEEE-------ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-EEESS-----------SS
T ss_pred             CceEEEEEE-------ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc-eeeee-----------cc
Confidence            32   2223       67899999999999984  37999999999999999876431000 01111           02


Q ss_pred             ccccceeeeEeccCCCEEEEee-cCeEEEEEccC
Q 015290          325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       325 ~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~  357 (409)
                      .|...|.+++|+|+|++||+++ |+.|+||+...
T Consensus       252 ~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          252 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            3457899999999999999987 59999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.7e-30  Score=235.10  Aligned_cols=255  Identities=16%  Similarity=0.221  Sum_probs=189.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++|+|+|+|++||+|+.||.|+|||+.+++                           .+..+.+|.        
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~--------  189 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS--------  189 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence            478899999999999999999999999999998776                           467889999        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..+.++.|    ++..|++++.|+.+++||............            ..........+.+.+..++++.
T Consensus       190 ----~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~------------~h~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          190 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLS------------GHSQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEE------------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ----CceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEec------------ccccceeeeeecCCCCeeeeee
Confidence                88999888    467999999999999999876543221111            1112333444555666666665


Q ss_pred             ccccceeEEEecCCcccce-eeeeeccccccceeEEEeCCCCC-eEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          190 WTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCE-TFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~-~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      .  |+.+++|+........ .+... ..|...|.+++|+|.+. .+++  | .|++|++||+. ++.....+       .
T Consensus       250 ~--D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~-t~~~~~~~-------~  318 (420)
T 4gga_A          250 N--DNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLSAV-------D  318 (420)
T ss_dssp             T--TSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT-TTEEEEEE-------E
T ss_pred             c--cccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC-ccccceee-------c
Confidence            5  8999999998754332 33333 78999999999999765 4444  4 79999999999 66666652       2


Q ss_pred             CccCceEEEEEeCCCCCEEEEEe--CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                       +...+.++.|+|++ ..+++++  .|+.|++||+++++.    +..             +.+|...|++++|+|||++|
T Consensus       319 -~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~----v~~-------------l~gH~~~V~~l~~spdg~~l  379 (420)
T 4gga_A          319 -AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAE-------------LKGHTSRVLSLTMSPDGATV  379 (420)
T ss_dssp             -CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEE-------------ECCCSSCEEEEEECTTSSCE
T ss_pred             -cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcE----EEE-------------EcCCCCCEEEEEEcCCCCEE
Confidence             34578999999999 7776654  799999999988653    233             34567899999999999999


Q ss_pred             EEee-cCeEEEEEccCCCcceEEEecccC
Q 015290          343 LSRD-YMNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       343 ~sg~-~~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                      ++|+ |++|+|||+.. ..+....+.+..
T Consensus       380 ~S~s~D~tvriWdv~~-~~~~~~~~~~~~  407 (420)
T 4gga_A          380 ASAAADETLRLWRCFE-LDPARRREREKA  407 (420)
T ss_dssp             EEEETTTEEEEECCSC-SSCC--------
T ss_pred             EEEecCCeEEEEECCC-CCccchhhhccC
Confidence            9997 59999999974 555555444433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=2.1e-30  Score=234.95  Aligned_cols=274  Identities=12%  Similarity=0.090  Sum_probs=195.2

Q ss_pred             ccCCCcEEEEEECCC----C---CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCC
Q 015290           29 LQDVDIVSAIEFDKT----G---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~----~---~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (409)
                      ..|...|++++|+|+    +   ++|++++.||.|++|++.+++..                      .......+.+|.
T Consensus        59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~  116 (397)
T 1sq9_A           59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------------------KKVIFEKLDLLD  116 (397)
T ss_dssp             ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------------------CCEEEEEECCSC
T ss_pred             ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------------------ccccceeecccc
Confidence            348999999999999    9   99999999999999999876620                      111245666772


Q ss_pred             ccccccccceeccceEEEEEEec--CCCCE-EEEEeCCCeEEEEEcCC------ceeee-----eeccCCCccccccccc
Q 015290          102 PEFDYLKSLEIEEKINRVRWCAA--PNGSM-FILSTNDKTIKLWKVRD------QKVKK-----IKEMDHFPFVSSENTL  167 (409)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s--~~~~~-l~s~~~d~~i~iwd~~~------~~~~~-----~~~~~~~~~~~~~~~~  167 (409)
                      ...       ....|.+++|.+.  |++++ |++++.|+.|++||+.+      ++...     .....      .....
T Consensus       117 ~~~-------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  183 (397)
T 1sq9_A          117 SDM-------KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT------VESPM  183 (397)
T ss_dssp             TTG-------GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE------ECCSS
T ss_pred             ccc-------CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee------ecccc
Confidence            000       0168999999311  78999 99999999999999987      44332     11100      00000


Q ss_pred             ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccc---c---ccceeEEEeCCCCCeEEEe-cC--
Q 015290          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA---H---DFNINSISNNSDCETFVSA-DD--  238 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l~~~-~d--  238 (409)
                      .....+..+.+++++ .++.+..  ++.+++||+..   .+++..+ ..   |   ...|.+++|+|++++|+++ .|  
T Consensus       184 ~~~~~i~~~~~~~~~-~l~~~~~--dg~i~i~d~~~---~~~~~~~-~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~  256 (397)
T 1sq9_A          184 TPSQFATSVDISERG-LIATGFN--NGTVQISELST---LRPLYNF-ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS  256 (397)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECT--TSEEEEEETTT---TEEEEEE-ECCC---CCCCCEEEEEECSSTTEEEEEEEETT
T ss_pred             CCCCCceEEEECCCc-eEEEEeC--CCcEEEEECCC---CceeEEE-eccccccccCCccceEEECCCCCEEEEEecCCC
Confidence            112334445556666 6666654  89999999986   3555555 55   8   8999999999999999999 88  


Q ss_pred             -CeEEEEEccCCCceeeeeecCCCcCcC-------------ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc
Q 015290          239 -LRINLWNLEISDQCFNIVDMKPSNMDD-------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (409)
Q Consensus       239 -~~i~lwd~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  304 (409)
                       +.|++||++ .+..+..       +..             |...|.+++|+|++ ++|++++.||.|++||+++++.  
T Consensus       257 ~g~i~i~d~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--  325 (397)
T 1sq9_A          257 FGCITLYETE-FGERIGS-------LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER--  325 (397)
T ss_dssp             EEEEEEEETT-TCCEEEE-------ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--
T ss_pred             CceEEEEECC-CCcccce-------eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCce--
Confidence             999999998 5666655       344             88999999999999 9999999999999999998764  


Q ss_pred             ccccccc------cccccc--CCcccccccccceeeeEeccCC----------CEEEEee-cCeEEEEEccC
Q 015290          305 HSARILR------DAAESH--GSKSFFTEIIASISDIKFANDG----------QHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       305 ~~~~~~~------~~~~~~--~~~~~~~~~~~~i~~~~~s~~g----------~~l~sg~-~~~v~iwd~~~  357 (409)
                        +..+.      .|.+..  ........|...|.+++|+|+|          ++|++++ |+.|++||+.+
T Consensus       326 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          326 --ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             --EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             --eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence              23333      210000  0001123347899999999998          7999987 59999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.1e-31  Score=234.82  Aligned_cols=238  Identities=14%  Similarity=0.109  Sum_probs=176.7

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      ...+.+++.+||+|+.||.|++||+.+++.                           +..+.  .            ..|
T Consensus        41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~---------------------------~~~~~--~------------~~v   79 (343)
T 3lrv_A           41 NKSMYYDKWVCMCRCEDGALHFTQLKDSKT---------------------------ITTIT--T------------PNP   79 (343)
T ss_dssp             CSSSSEEEEEEEEEEETTEEEEEEESSSSC---------------------------EEEEE--E------------ECC
T ss_pred             hhhhcCCCCEEEEECCCCcEEEEECCCCcE---------------------------EEEEe--c------------CCc
Confidence            344556889999999999999999998763                           22232  2            578


Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccccee
Q 015290          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  196 (409)
                      .++.|+  |+   +++++.|++|++|+....                                                +
T Consensus        80 ~~~~~~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~  106 (343)
T 3lrv_A           80 RTGGEH--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------I  106 (343)
T ss_dssp             CTTCCC--CS---EEEECSTTEEEEEETTTE------------------------------------------------E
T ss_pred             eeeeeC--Cc---eEEecCCCeEEEEEccCc------------------------------------------------e
Confidence            888884  55   999999999999998653                                                3


Q ss_pred             EEEecCCcccceeeeeeccccccceeEEEeCC--CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                      .+|+..+   .+.++.+..+|...|.+++|+|  ++++++++ .|++|++||++ .+......      ...+...++++
T Consensus       107 ~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~  176 (343)
T 3lrv_A          107 TILDSKT---NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSG  176 (343)
T ss_dssp             EEEETTT---CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEE
T ss_pred             EEeecCC---cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEE
Confidence            3444443   2323333356778999999999  99999999 99999999999 56555442      23456679999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw  353 (409)
                      +|+|++ .+|++|+.||.|++||+++++...   ..+..            +|..+|.+++|+|+|.+|++++++.|++|
T Consensus       177 ~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iw  240 (343)
T 3lrv_A          177 VLHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCF  240 (343)
T ss_dssp             EECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEE
T ss_pred             EECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEE
Confidence            999999 999999999999999999875310   11221            25789999999999999999988899999


Q ss_pred             EccCCCcceEEEec---ccCcccccccccCCCCccceeeEEEcCCCCeEEEccc-CCCC
Q 015290          354 DIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-RRDN  408 (409)
Q Consensus       354 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~-dg~i  408 (409)
                      |+++ ++.+..+..   |...+.         .    .+++|+|+|++|++++. |+.|
T Consensus       241 d~~~-~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~g~~l~~~s~~d~~i  285 (343)
T 3lrv_A          241 DLRK-DVGTLAYPTYTIPEFKTG---------T----VTYDIDDSGKNMIAYSNESNSL  285 (343)
T ss_dssp             ETTS-STTCBSSCCCBC-----C---------C----EEEEECTTSSEEEEEETTTTEE
T ss_pred             EcCC-CCcceeeccccccccccc---------c----eEEEECCCCCEEEEecCCCCcE
Confidence            9986 555444333   222210         0    25999999999999887 6653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.7e-30  Score=232.34  Aligned_cols=204  Identities=11%  Similarity=0.168  Sum_probs=157.8

Q ss_pred             CCCcEEEEEECCCCCEEEEE--ecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +...+.+++|+|||++||++  +.|++|+|||+.+++.                           +..+. |.       
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~---------------------------~~~~~-~~-------  176 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE---------------------------KFEIE-TR-------  176 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE---------------------------EEEEE-CS-------
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE---------------------------EEEeC-CC-------
Confidence            55679999999999998754  4789999999987763                           33443 55       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+|+|  +|+|++|++++.++ +++|+..++......                                   
T Consensus       177 -----~~V~~v~f--spdg~~l~s~s~~~-~~~~~~~~~~~~~~~-----------------------------------  213 (365)
T 4h5i_A          177 -----GEVKDLHF--STDGKVVAYITGSS-LEVISTVTGSCIARK-----------------------------------  213 (365)
T ss_dssp             -----SCCCEEEE--CTTSSEEEEECSSC-EEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----CceEEEEE--ccCCceEEecccee-EEEEEeccCcceeee-----------------------------------
Confidence                 68999999  89999999998655 666666655432211                                   


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCC----eEEEEEccCCCceeeeeecCCCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~----~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                                              ....|...|.+++|+|+++.++++ .|+    .+++|++. ........   ...+
T Consensus       214 ------------------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~-~~~~~~~~---~~~~  265 (365)
T 4h5i_A          214 ------------------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK-SGNTSVLR---SKQV  265 (365)
T ss_dssp             ------------------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE-TTEEEEEE---EEEE
T ss_pred             ------------------------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc-cceeccee---eeee
Confidence                                    115688889999999999999998 666    67889887 33221110   0125


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .+|...|++++|+|+| ++||+|+.|+.|+|||+++++..    ..+            +.+|...|++++|+|||++||
T Consensus       266 ~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~~----~~~------------~~gH~~~V~~v~fSpdg~~la  328 (365)
T 4h5i_A          266 TNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSMS----KIF------------KQAHSFAITEVTISPDSTYVA  328 (365)
T ss_dssp             ESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEE------------TTSSSSCEEEEEECTTSCEEE
T ss_pred             cCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcEE----EEe------------cCcccCCEEEEEECCCCCEEE
Confidence            7788999999999999 99999999999999999987631    221            235678999999999999999


Q ss_pred             Eee-cCeEEEEEccC
Q 015290          344 SRD-YMNLKLWDIRM  357 (409)
Q Consensus       344 sg~-~~~v~iwd~~~  357 (409)
                      +|+ |++|+|||+..
T Consensus       329 S~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          329 SVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTSEEEEEECCT
T ss_pred             EEeCCCeEEEEEcCC
Confidence            998 59999999964

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=6.4e-30  Score=232.14  Aligned_cols=246  Identities=14%  Similarity=0.178  Sum_probs=189.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |...|++++|+|++++||+|+.||.|++||+.+++                           .+..+.+|.         
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~---------  176 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT---------------------------KLRTMAGHQ---------  176 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS---------
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe---------------------------EEEEecCCC---------
Confidence            78899999999999999999999999999998776                           466788898         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-eeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         ..|.+++|    +++.|++++.|+.|++||+... ........             ..+.+....+++++.+++.++
T Consensus       177 ---~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          177 ---ARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-------------HSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             ---SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred             ---CceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcC-------------CCCCeeEEEEcCCCCEEEEEe
Confidence               89999999    3469999999999999999843 33222221             123344455566667777766


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-E--e-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-S--A-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      .  |+.|++||+..   .++...+ ..|...|.+++|+|++..++ +  | .|+.|++||+. .+..+..+        .
T Consensus       237 ~--d~~v~iwd~~~---~~~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~-~~~~~~~~--------~  301 (401)
T 4aez_A          237 N--DNVVQIWDARS---SIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA-TGARVNTV--------D  301 (401)
T ss_dssp             T--TSCEEEEETTC---SSEEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT-TCCEEEEE--------E
T ss_pred             C--CCeEEEccCCC---CCccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC-CCCEEEEE--------e
Confidence            5  89999999986   3445554 68999999999999875554 4  3 59999999999 66666653        2


Q ss_pred             ccCceEEEEEeCCCCCEEEE--EeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      +...+.+++|+|++ .++++  |+.||.|++||+++++..    ....           +.+|...|.+++|+|+|++|+
T Consensus       302 ~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~----~~~~-----------~~~h~~~v~~~~~s~dg~~l~  365 (401)
T 4aez_A          302 AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLT----KQVD-----------IPAHDTRVLYSALSPDGRILS  365 (401)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEE----EEEE-----------EECCSSCCCEEEECTTSSEEE
T ss_pred             CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccce----eEEE-----------ecCCCCCEEEEEECCCCCEEE
Confidence            55789999999999 88888  458999999999875431    1111           234578899999999999999


Q ss_pred             Eee-cCeEEEEEccCCCcceEE
Q 015290          344 SRD-YMNLKLWDIRMDSTPVAT  364 (409)
Q Consensus       344 sg~-~~~v~iwd~~~~~~~~~~  364 (409)
                      +++ |+.|++||+.. ++.+..
T Consensus       366 s~~~dg~i~iw~~~~-~~~~~~  386 (401)
T 4aez_A          366 TAASDENLKFWRVYD-GDHVKR  386 (401)
T ss_dssp             EECTTSEEEEEECCC-------
T ss_pred             EEeCCCcEEEEECCC-Cccccc
Confidence            997 59999999986 555444

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=6.9e-30  Score=229.45  Aligned_cols=264  Identities=11%  Similarity=0.107  Sum_probs=196.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|++++|+|++++|++|+.||.|++||+.+++.                         .....+.+|.        
T Consensus        50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~--------   96 (372)
T 1k8k_C           50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN--------   96 (372)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS--------
T ss_pred             CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------eeeEEeecCC--------
Confidence            4899999999999999999999999999999987642                         1233446677        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee---eeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                          ..|.+++|  +|++++|++++.|+.|++||+..+...   ......            ....+..+.+++++.+++
T Consensus        97 ----~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           97 ----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP------------IRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT------------CCSCEEEEEECTTSSEEE
T ss_pred             ----CceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc------------cCCCeeEEEEcCCCCEEE
Confidence                89999999  789999999999999999999876521   111111            123344455566666676


Q ss_pred             cccccccceeEEEecCCc---------------ccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC
Q 015290          187 HLEWTENMATKIANVGNS---------------VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (409)
                      .+..  ++.+++||+...               ...+++..+ .+|...|.+++|+|++++|+++ .|+.|++||++ .+
T Consensus       159 ~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~  234 (372)
T 1k8k_C          159 AGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-KK  234 (372)
T ss_dssp             EEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG-GT
T ss_pred             EEcC--CCCEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC-CC
Confidence            6654  899999997521               224555555 6899999999999999999999 99999999998 66


Q ss_pred             ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC--ccccc-cc--------------ccccccc
Q 015290          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCD-HS--------------ARILRDA  313 (409)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~--~~~~~-~~--------------~~~~~~~  313 (409)
                      ..+..       +..|...|.+++|+|++ .+|++| .|+.|++||++.  ++... ..              ...+...
T Consensus       235 ~~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (372)
T 1k8k_C          235 MAVAT-------LASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL  305 (372)
T ss_dssp             TEEEE-------EECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred             ceeEE-------EccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence            66665       56788899999999998 888877 899999999987  42100 00              0111000


Q ss_pred             -ccccCC------cccccccccceeeeEec-cCC---CEEEEeec-CeEEEEEccC
Q 015290          314 -AESHGS------KSFFTEIIASISDIKFA-NDG---QHLLSRDY-MNLKLWDIRM  357 (409)
Q Consensus       314 -~~~~~~------~~~~~~~~~~i~~~~~s-~~g---~~l~sg~~-~~v~iwd~~~  357 (409)
                       ......      .....+|...|++++|+ ++|   ++|++|++ |.|++||+++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence             000000      22234889999999966 666   99999984 9999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=6.7e-30  Score=227.84  Aligned_cols=284  Identities=13%  Similarity=0.104  Sum_probs=185.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|.+.|++++|+|||++||+|+.+| ++||++.+...                           ..  ..+.        
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~---------------------------~~--~~~~--------   58 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH---------------------------IM--SQEM--------   58 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------EE--EEEC--------
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------ee--eeec--------
Confidence            4899999999999999999998775 78999876542                           11  1111        


Q ss_pred             ceeccceEEEEEEecCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                          ..+..+++  .++++.+ ++++.|++|++||+.+++.......  ...+.++.            .++....+.  
T Consensus        59 ----~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~--~~~v~~v~------------~~~~~~~~~--  116 (355)
T 3vu4_A           59 ----RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV--DAPVKDLF------------LSREFIVVS--  116 (355)
T ss_dssp             ----SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC--SSCEEEEE------------ECSSEEEEE--
T ss_pred             ----CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCcEEEEEEC--CCceEEEE------------EcCCEEEEE--
Confidence                24667778  4666676 5678889999999999887665442  22222222            222221111  


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCc--------------
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQ--------------  251 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~--------------  251 (409)
                         .++.+++||+.+..  +.+..+ ..   +...+++++  ..+++  | .||.|++||+. .+.              
T Consensus       117 ---~~~~i~i~d~~~~~--~~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~-~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          117 ---YGDVISVFKFGNPW--KRITDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQ-SSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             ---ETTEEEEEESSTTC--CBSSCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECC-C----------------
T ss_pred             ---EcCEEEEEECCCCc--eeeEEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECC-CCCcccccccccccccc
Confidence               26789999998741  222322 12   334556666  55554  7 89999999998 332              


Q ss_pred             -e-eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          252 -C-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       252 -~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                       + +..       +.+|...|++++|+|++ ++|++|+.|++ |++||+++++.    +..+..           ..|..
T Consensus       185 ~p~~~~-------~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~----~~~~~~-----------g~h~~  241 (355)
T 3vu4_A          185 LGKGVL-------IKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL----VREFRR-----------GLDRA  241 (355)
T ss_dssp             --CCEE-------ECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE----EEEEEC-----------TTCCS
T ss_pred             CcccEE-------EEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEc-----------CCCCC
Confidence             0 232       68899999999999999 99999999998 99999998764    233321           01567


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEEccCCC-cceEEEec-----ccCcccccccc-cCCCCccceeeEEEcCCCCeEE
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDS-TPVATFKI-----HEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~-~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      .|.+++|+|+|++|+++++ +.|++||++... .....+..     +.......+.. ...........++|+|||++|+
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~  321 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV  321 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence            8999999999999999985 999999997521 11111111     00000000000 0000011114799999999999


Q ss_pred             EcccCCCC
Q 015290          401 TGSYRRDN  408 (409)
Q Consensus       401 s~s~dg~i  408 (409)
                      +++.||.+
T Consensus       322 ~~~~dg~~  329 (355)
T 3vu4_A          322 VWPHTRMI  329 (355)
T ss_dssp             EETTTTEE
T ss_pred             EEeCCCeE
Confidence            99999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=3e-30  Score=232.88  Aligned_cols=252  Identities=15%  Similarity=0.123  Sum_probs=182.5

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +|...|.+++|+| ++++|++|+.||.|++||+.+...                         ..+....+|.       
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~-------  163 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD-------  163 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence            5899999999999 789999999999999999986431                         1222223344       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc-eeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  187 (409)
                           ..|.+++|  +|++++|++++.|+.|++||+... .......             ....+..+.+++.+. ++++
T Consensus       164 -----~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-------------h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          164 -----YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDGH-EIFKEKL-------------HKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             -----CCEEEEEE--ETTTTEEEEEETTSEEEEEETTSC-EEEEEEC-------------SSSCEEEEEECSSCTTEEEE
T ss_pred             -----CCeEEEEE--CCCCCEEEEECCCCCEEEEECCCC-EEEEecc-------------CCCcEEEEEECCCCCCEEEE
Confidence                 78999999  689999999999999999999543 3332221             123344455566665 6666


Q ss_pred             ccccccceeEEEecCCccc-ceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      ++.  |+.|++||+..... ..++..+  +|...|.+++|+| ++++|+++ .|+.|++||++ .......+........
T Consensus       223 ~~~--d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          223 SSV--DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY-DWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EET--TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT-BTTSCSEEEECCBCCC
T ss_pred             EeC--CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC-CCcccccccccccccc
Confidence            655  89999999986433 3344443  6899999999999 99999999 99999999998 4444433322111122


Q ss_pred             Ccc----------CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE
Q 015290          265 DLT----------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (409)
Q Consensus       265 ~~~----------~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  334 (409)
                      .|.          ..+..++|+|++ ++  +++.|+.|++||+++++.    +..+..|           .|...+..++
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~----~~~l~~~-----------~~~~~~~~~~  359 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGL----VHQLRDP-----------NAAGIISLNK  359 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCE----EEEECBT-----------TBCSCCCEEE
T ss_pred             ccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCce----eeeecCC-----------CCCceEEEEE
Confidence            222          334456677776 55  778999999999988764    2333331           1345677789


Q ss_pred             eccCCCEEEEeecCeEEEEEccC
Q 015290          335 FANDGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       335 ~s~~g~~l~sg~~~~v~iwd~~~  357 (409)
                      |+|++++|++|+|+.|++||+++
T Consensus       360 ~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          360 FSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             ECTTSSEEEEEETTEEEEEECC-
T ss_pred             EecCccEEEEecCCcEEEEecCC
Confidence            99999999999899999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=2.4e-29  Score=231.60  Aligned_cols=265  Identities=16%  Similarity=0.222  Sum_probs=205.0

Q ss_pred             cccCCCcE-EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v-~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..+|.+.| .++.  ++|++||+|+.||.|++||+.+++                           .+..+.+|.     
T Consensus       114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-----  159 (445)
T 2ovr_B          114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT-----  159 (445)
T ss_dssp             EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-----
T ss_pred             ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc---------------------------EEEEEcCCC-----
Confidence            34587764 5554  468999999999999999998776                           467788999     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             +.|.+++|  +  +..+++++.|++|++||+.+++.......+ ...+.++.+            +  ...++
T Consensus       160 -------~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~------------~--~~~l~  213 (445)
T 2ovr_B          160 -------GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECIHTLYGH-TSTVRCMHL------------H--EKRVV  213 (445)
T ss_dssp             -------SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEE------------E--TTEEE
T ss_pred             -------CCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEEEEECCC-CCcEEEEEe------------c--CCEEE
Confidence                   89999999  3  569999999999999999988776554422 122222222            1  23344


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      .++.  |+.+++||+.+   .+++..+ .+|...|.++++  +++++++| .|+.|++||++ .+..+..       +.+
T Consensus       214 s~s~--dg~i~~wd~~~---~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~-------~~~  277 (445)
T 2ovr_B          214 SGSR--DATLRVWDIET---GQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHT-------LQG  277 (445)
T ss_dssp             EEET--TSEEEEEESSS---CCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEE-------ECC
T ss_pred             EEeC--CCEEEEEECCC---CcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEE-------ecC
Confidence            4443  89999999976   4455555 789999999999  67889999 99999999998 6666665       578


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |...|.+++|  ++ .++++++.||.|++||+++++.    ...+.             +|...+.++.++  +++|++|
T Consensus       278 ~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~-------------~~~~~v~~~~~~--~~~l~~~  335 (445)
T 2ovr_B          278 HTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTLT-------------GHQSLTSGMELK--DNILVSG  335 (445)
T ss_dssp             CSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEEC-------------CCCSCEEEEEEE--TTEEEEE
T ss_pred             CCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEEc-------------CCcccEEEEEEe--CCEEEEE
Confidence            8999999999  66 8999999999999999988753    22333             345677777764  6799998


Q ss_pred             e-cCeEEEEEccCCCcceEEEec---ccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 D-YMNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      + |+.|++||+++ ++++..+.+   |...+               .+++|+  +++|++|+.||.|
T Consensus       336 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v  384 (445)
T 2ovr_B          336 NADSTVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTV  384 (445)
T ss_dssp             ETTSCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEE
T ss_pred             eCCCeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeE
Confidence            7 59999999986 888888886   44443               588885  6799999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.6e-31  Score=240.64  Aligned_cols=252  Identities=10%  Similarity=0.042  Sum_probs=181.1

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ++|++++|  +|++++|++++.|+.|++||+.++.......+.           .....+..+.+++++.++++++.  |
T Consensus        12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~~~l~s~s~--d   76 (377)
T 3dwl_C           12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-----------DHDKIVTCVDWAPKSNRIVTCSQ--D   76 (377)
T ss_dssp             SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-----------CCSSCEEEEEECTTTCCEEEEET--T
T ss_pred             CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-----------cCCceEEEEEEeCCCCEEEEEeC--C
Confidence            78999999  789999999999999999999987322221111           11233445556666677777765  8


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc---eeeeeecCCCcCcC-ccC
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ---CFNIVDMKPSNMDD-LTE  268 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~---~~~~~~~~~~~~~~-~~~  268 (409)
                      +.|++||+.......+...+ .+|...|.+++|+|++++|+++ .|+.|++||++ .+.   ....       +.+ |..
T Consensus        77 ~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~-------~~~~h~~  147 (377)
T 3dwl_C           77 RNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE-QENDWWVSKH-------LKRPLRS  147 (377)
T ss_dssp             SSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEE-------ECSSCCS
T ss_pred             CeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEEC-CcccceeeeE-------eecccCC
Confidence            99999999875433344444 7899999999999999999999 99999999998 443   2333       345 899


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccc-ccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      .|++++|+|++ ++|++++.|+.|++||++........... +............+ +|...|.+++|+|+|++|++++.
T Consensus       148 ~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          148 TILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             CEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET
T ss_pred             CeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC
Confidence            99999999999 99999999999999999754321110000 00000000011223 77889999999999999999975


Q ss_pred             -CeEEEEEccCCCcc----eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          348 -MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       348 -~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                       +.|++||+.+ ++.    +..+.+|...+               .+++|+|+|++|++|+.|+.
T Consensus       226 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          226 DSSVTIAYPSA-PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             TTEEC-CEECS-TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSE
T ss_pred             CCcEEEEECCC-CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcE
Confidence             9999999986 555    67788887765               69999999999999988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=5.9e-30  Score=232.53  Aligned_cols=244  Identities=14%  Similarity=0.156  Sum_probs=185.1

Q ss_pred             EEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           35 VSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        35 v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      ...++++|+...+ ++++.||.|+||++.....                       ....+..+.+|.            
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-----------------------~~~~~~~~~~h~------------   81 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-----------------------VDKNVPLVCGHT------------   81 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-----------------------CCTTCCCBCCCS------------
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-----------------------CCCCCceEecCC------------
Confidence            3468888876544 4578999999999865421                       001234577888            


Q ss_pred             cceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      +.|.+++|  +| ++++|++++.|++|++||+.++......                                       
T Consensus        82 ~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~---------------------------------------  120 (402)
T 2aq5_A           82 APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL---------------------------------------  120 (402)
T ss_dssp             SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB---------------------------------------
T ss_pred             CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc---------------------------------------
Confidence            89999999  68 8999999999999999999876432110                                       


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                    ..++..+ .+|...|.+++|+|++ .+|+++ .|+.|++||++ .+.....+.     ...|...|
T Consensus       121 --------------~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-----~~~~~~~v  179 (402)
T 2aq5_A          121 --------------REPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLG-----PDVHPDTI  179 (402)
T ss_dssp             --------------CSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEEC-----TTTCCSCE
T ss_pred             --------------CCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEe-----cCCCCCce
Confidence                          0222223 6899999999999998 689998 99999999999 666665520     16789999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccc-cccccccCCccccccccc-ceeeeEeccCCCEEEEe---
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR---  345 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~sg---  345 (409)
                      .+++|+|++ .+|++++.||.|++||+++++.    ...+ ..             |.. .+.+++|+|++++|++|   
T Consensus       180 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          180 YSVDWSRDG-ALICTSCRDKRVRVIEPRKGTV----VAEKDRP-------------HEGTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             EEEEECTTS-SCEEEEETTSEEEEEETTTTEE----EEEEECS-------------SCSSSCCEEEECSTTEEEEEEECT
T ss_pred             EEEEECCCC-CEEEEEecCCcEEEEeCCCCce----eeeeccC-------------CCCCcceEEEEcCCCcEEEEeccC
Confidence            999999999 9999999999999999998764    2233 22             233 48899999999999998   


Q ss_pred             e-cCeEEEEEccCCCcceEEEe-cccCcccccccccCCCCccceeeEEEcCCCCeEE-EcccCCCC
Q 015290          346 D-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-s~s~dg~i  408 (409)
                      + ++.|++||++....++.... .+...+               .+++|+|++++|+ +|+.||.|
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCE
T ss_pred             CCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeE
Confidence            4 59999999986444444443 233333               6899999999986 56678875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-29  Score=224.39  Aligned_cols=254  Identities=11%  Similarity=0.113  Sum_probs=194.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|+|++++|++++.||.|++||+.+++.                           +..+. |.        
T Consensus        72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------~~~~~-~~--------  115 (369)
T 3zwl_B           72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC---------------------------VATWK-SP--------  115 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEE-CS--------
T ss_pred             hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEee-cC--------
Confidence            4899999999999999999999999999999987763                           34444 55        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCC-----CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                          ..|.+++|  +|++++|++++.+     +.|++||+..+.............+..+........+..+.+++++.+
T Consensus       116 ----~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (369)
T 3zwl_B          116 ----VPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY  189 (369)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred             ----CCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE
Confidence                78999999  7999999999999     999999997654322211111111111111111114445555666667


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      ++.+..  ++.|++||+...  ...+..+ ..|...|.+++|+|++++|+++ .|+.|++||++ .+.....+       
T Consensus       190 l~~~~~--dg~i~i~d~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~-------  256 (369)
T 3zwl_B          190 IIAGHK--DGKISKYDVSNN--YEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS-TLQVLKKY-------  256 (369)
T ss_dssp             EEEEET--TSEEEEEETTTT--TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEE-------
T ss_pred             EEEEcC--CCEEEEEECCCC--cEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECC-CCceeeee-------
Confidence            766654  899999999763  2344444 6789999999999999999999 99999999999 66666553       


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEeCCC--------------eEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSSSRG--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      . +...+.+++|+|++ .++++++.++              .+++||..+++.    ...             +.+|...
T Consensus       257 ~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~-------------~~~~~~~  317 (369)
T 3zwl_B          257 E-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE----IGR-------------VQGHFGP  317 (369)
T ss_dssp             E-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE----EEE-------------EECCSSC
T ss_pred             c-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc----hhh-------------eecccCc
Confidence            2 66789999999999 9999999888              789999887653    122             2345788


Q ss_pred             eeeeEeccCCCEEEEee-cCeEEEEEccC
Q 015290          330 ISDIKFANDGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       330 i~~~~~s~~g~~l~sg~-~~~v~iwd~~~  357 (409)
                      |.+++|+|++++|++++ |+.|++|++..
T Consensus       318 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          318 LNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            99999999999999997 59999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-31  Score=240.53  Aligned_cols=263  Identities=13%  Similarity=0.094  Sum_probs=189.5

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ...++|.+.|.+++|||||++||+++.||.|+|||.++                             ++..+. |..   
T Consensus        79 ~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------------------------~l~~l~-~~~---  125 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------------------------MLTNLD-SKG---  125 (588)
T ss_dssp             SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------------------------EEEECC-CSS---
T ss_pred             EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------------------------eeeecc-CCC---
Confidence            44456788999999999999999999999999999543                             234455 551   


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee-------eeeeccCCCcccccccccccccCceeccC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-------KKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (409)
                      ++..    ..|.+++|  ||||++|++|+.||+|++||+.++..       ......+..         .....+..+.+
T Consensus       126 ~~~~----~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~---------gh~~~V~sVaw  190 (588)
T 2j04_A          126 NLSS----RTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA---------GSKDWVTHIVW  190 (588)
T ss_dssp             CSTT----TCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT---------TCCCCEEEEEE
T ss_pred             cccc----ccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc---------cccccEEEEEE
Confidence            0000    35999999  89999999999999999999988753       122111110         01234555566


Q ss_pred             CCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeec
Q 015290          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~  258 (409)
                      ++++  ++.++.  |+.+++|++.........+.+..+|...|.+++|+  ++.++++.+++|++||+. .+.....   
T Consensus       191 SPdg--Laass~--D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~-~~~~~~~---  260 (588)
T 2j04_A          191 YEDV--LVAALS--NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLK-NYSISSL---  260 (588)
T ss_dssp             ETTE--EEEEET--TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETT-TTEEEEE---
T ss_pred             cCCc--EEEEeC--CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECC-CCeEEEE---
Confidence            6666  444433  89999999987543222333324788999999999  688988866999999998 4444232   


Q ss_pred             CCCcCcCccCceEEEEE--eCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290          259 KPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~--~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  336 (409)
                          ..+|...+.+++|  +|++ ..+++++.||+ ++|....                                 ++++
T Consensus       261 ----~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~---------------------------------~~~s  301 (588)
T 2j04_A          261 ----KTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDE---------------------------------LHVT  301 (588)
T ss_dssp             ----ECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSS---------------------------------EEEE
T ss_pred             ----EcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeecc---------------------------------EEEC
Confidence                2379999999999  9999 99999999999 9998641                                 4578


Q ss_pred             cCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          337 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       337 ~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      ||+..+++. |+++++|+..  ++.+..+.+ ...               |.+++|||||+.+|+++.
T Consensus       302 pd~~l~a~~-d~~v~lW~~~--g~~l~~~~~-~~~---------------I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          302 ADNIIAPYL-EKKFKKWSTI--WNEFNNYET-TLV---------------IHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             CCCSSHHHH-HHHHHHTTTT--TTSSSSSCC-EEE---------------EEEEEECTTSSEEEEEEE
T ss_pred             CCceEEEEc-CCEEEEEECC--CCceeeecc-ceE---------------EEEEEECCCCCEEEEEEe
Confidence            888877775 7888889875  343333322 222               368999999988888764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=5.6e-30  Score=224.68  Aligned_cols=212  Identities=18%  Similarity=0.293  Sum_probs=163.6

Q ss_pred             ccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        29 ~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .+|.+.|++++|+|  ++++||+|+.|++|+|||+.++..                         +....+.+|.     
T Consensus        54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-------------------------~~~~~~~~h~-----  103 (316)
T 3bg1_A           54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-------------------------EKSHEHAGHD-----  103 (316)
T ss_dssp             ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-------------------------CEEEEECCCS-----
T ss_pred             cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-------------------------eEEEEccCCC-----
Confidence            35999999999986  489999999999999999987542                         1355678898     


Q ss_pred             cccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                             ..|.+++|  +|+  +.+|++++.|++|++||+..+.....                                
T Consensus       104 -------~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~--------------------------------  142 (316)
T 3bg1_A          104 -------SSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEV--------------------------------  142 (316)
T ss_dssp             -------SCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEE--------------------------------
T ss_pred             -------CceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcce--------------------------------
Confidence                   89999999  455  88999999999999999976521110                                


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-----------------CCeEEEe-cCCeEEEEEc
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----------------CETFVSA-DDLRINLWNL  246 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------------~~~l~~~-~d~~i~lwd~  246 (409)
                                               ... +.+|...+.+++|+|+                 +++|++| .|+.|++||+
T Consensus       143 -------------------------~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          143 -------------------------KKI-NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             -------------------------CCB-TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             -------------------------eee-eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence                                     000 1467777778888776                 4689999 9999999999


Q ss_pred             cCCC--ceeeeeecCCCcCcCccCceEEEEEeCCC---CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcc
Q 015290          247 EISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (409)
Q Consensus       247 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  321 (409)
                      +..+  .....       +.+|...|.+++|+|++   ..+|++++.|++|++||++...........            
T Consensus       197 ~~~~~~~~~~~-------l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~------------  257 (316)
T 3bg1_A          197 EEDGQWKEEQK-------LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL------------  257 (316)
T ss_dssp             CTTSCEEEEEC-------CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE------------
T ss_pred             CCCCccceeee-------cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh------------
Confidence            7322  23333       68899999999999985   268999999999999998763210000011            


Q ss_pred             cccccccceeeeEeccCCCEEEEee-cCeEEEEEccC
Q 015290          322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       322 ~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~  357 (409)
                       +..|...|.+++|+|+|++||+++ |+.|+||+...
T Consensus       258 -~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          258 -LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             -EEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             -hhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence             234567899999999999999987 59999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1e-28  Score=210.92  Aligned_cols=269  Identities=11%  Similarity=0.091  Sum_probs=182.6

Q ss_pred             cEEEEEECCCCC---EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc----
Q 015290           34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY----  106 (409)
Q Consensus        34 ~v~~v~~~~~~~---~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----  106 (409)
                      .+.++-|-..|-   -+++++. ..|++|+..+..                        +++.+.++..|+....-    
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~   95 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW------------------------QWEKLYTWHFAEVPVLQIVPV   95 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc------------------------cceeeEEEeccCceeEEEEEc
Confidence            466777766443   5666764 689999999874                        56677777777721110    


Q ss_pred             ----------cccceeccceEEEEEEecCC----CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290          107 ----------LKSLEIEEKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus       107 ----------~~~~~~~~~v~~l~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                                +..|+. ..|++|+|  +|+    ++.+++++.  .+++|++.+++.....                   
T Consensus        96 ~~~~~~~~~~~~~~~~-~~v~sla~--spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss-------------------  151 (356)
T 2w18_A           96 PDVYNLVCVALGNLEI-REIRALFC--SSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSS-------------------  151 (356)
T ss_dssp             TTCCSCEEEEECSSSE-EEEEEECC--------CCEEEEEEEE--EEEEEEETTTEEEEEE-------------------
T ss_pred             Ccccceeeeeeccccc-cceEEEEE--CCCccccccEEEeCCC--eEEEEecCCCcEEEec-------------------
Confidence                      111121 47888888  788    888888874  4888998776554331                   


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC---CCCeEEEe-cCCeEEEEEccC
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEI  248 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~lwd~~~  248 (409)
                                      ....++.|++|++...  ++.+... .+|...++.++|++   +++.|++| .|++|+|||+. 
T Consensus       152 ----------------~~g~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-  211 (356)
T 2w18_A          152 ----------------GTLSDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-  211 (356)
T ss_dssp             ----------------SSSTTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-
T ss_pred             ----------------ccCCCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-
Confidence                            1112778999999432  3444444 67888999999999   77999999 99999999999 


Q ss_pred             CCceeeeeecCCCcCcCc---cCceEEEEEeCCCCCEE------------EEEeCCCeEEEEeCCCcccccccccccccc
Q 015290          249 SDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  313 (409)
                      +++++.++       .+|   ...+.+++|+|+| .++            ++|+.|++|++||..+++..    ..+.. 
T Consensus       212 TGk~l~tL-------~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~-  278 (356)
T 2w18_A          212 TGQLLKKM-------HIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY-  278 (356)
T ss_dssp             TCCEEEEE-------ECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-
T ss_pred             CCcEEEEE-------cCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-
Confidence            78888774       333   3467888999999 765            66888999999999887642    22110 


Q ss_pred             ccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE
Q 015290          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (409)
                      .       .-.+|...+.+..++  +.++|+|+ |++|+|||+.+ ++++.++.+|...+.              ..++|
T Consensus       279 ~-------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vaf  334 (356)
T 2w18_A          279 C-------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKW  334 (356)
T ss_dssp             C-------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEE
T ss_pred             e-------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEE
Confidence            0       001233334333443  78899997 59999999987 899999998877541              25899


Q ss_pred             cCCCCeEEEcccCCCC
Q 015290          393 SGDGLHFATGSYRRDN  408 (409)
Q Consensus       393 spdg~~l~s~s~dg~i  408 (409)
                      ||||++|++|+.|++|
T Consensus       335 SPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          335 SGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             CSSSSEEEEECTTSCE
T ss_pred             CCCCCEEEEEECCCcE
Confidence            9999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-30  Score=235.28  Aligned_cols=281  Identities=13%  Similarity=0.153  Sum_probs=201.2

Q ss_pred             EECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cCCCccccccccceeccceE
Q 015290           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSLEIEEKIN  117 (409)
Q Consensus        39 ~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~v~  117 (409)
                      .|+|+++.+++++      .|+....                            .+..+ .+|.            +.|+
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g~----------------------------~~~~~~~~h~------------~~V~   67 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRGK----------------------------LIATLMENEP------------NSIT   67 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCCC----------------------------EEEEECTTTT------------SCEE
T ss_pred             hcCCccccccccc------cccccce----------------------------EEeeeccCCC------------CceE
Confidence            4788888888765      3764332                            46667 8898            8999


Q ss_pred             EEEEEecC-CCCEEEEEeCCCeEEEEEcCC---ceee-eeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          118 RVRWCAAP-NGSMFILSTNDKTIKLWKVRD---QKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       118 ~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      +++|  +| ++++|++|+.|++|++||+.+   +... ....+.            ....+..+.++++...+++++.  
T Consensus        68 ~~~~--s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~s~s~--  131 (437)
T 3gre_A           68 SSAV--SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD------------CSSTVTQITMIPNFDAFAVSSK--  131 (437)
T ss_dssp             EEEE--ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE------------CSSCEEEEEECTTSSEEEEEET--
T ss_pred             EEEE--CCCCCCEEEEecCCceEEEeECcccccCcccceeeecc------------CCCCEEEEEEeCCCCEEEEEeC--
Confidence            9999  68 999999999999999999876   3211 111111            1233445555566667776665  


Q ss_pred             cceeEEEecCCcccceeeeee---------ccc--cccceeEEE--eCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec
Q 015290          193 NMATKIANVGNSVHARCQKVY---------PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~---------~~~--~~~~v~~l~--~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~  258 (409)
                      |+.|++||++....++....+         +..  +...+.++.  +++++.+|++| .|+.|++||++ .+..+..   
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~---  207 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQI---  207 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEE---
T ss_pred             CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEE---
Confidence            899999999633222222221         011  455666666  56889999999 99999999998 6666665   


Q ss_pred             CCCcCcC--ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee---
Q 015290          259 KPSNMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI---  333 (409)
Q Consensus       259 ~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---  333 (409)
                          +.+  |...|++++|+|++ ++|++|+.||.|++||+++++.    ...+..            .|...|.++   
T Consensus       208 ----~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~------------~~~~~v~~~~~~  266 (437)
T 3gre_A          208 ----IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVL----IRSWSF------------GDHAPITHVEVC  266 (437)
T ss_dssp             ----EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEEBC------------TTCEEEEEEEEC
T ss_pred             ----EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccE----EEEEec------------CCCCceEEEEec
Confidence                344  88999999999999 9999999999999999998653    232221            234689999   


Q ss_pred             -EeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCccccccc-----------ccCCCCccceeeEEEcCCCCeEE
Q 015290          334 -KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------LYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       334 -~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                       .|+|++++|++|+. +.|++||+++ ++++..+.+|...+....-           +........|++++|+ ++++|+
T Consensus       267 ~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          267 QFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             TTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             cccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence             45567889999975 9999999986 8889999988765432110           0001122336799999 889999


Q ss_pred             EcccCCCC
Q 015290          401 TGSYRRDN  408 (409)
Q Consensus       401 s~s~dg~i  408 (409)
                      +|+.||.|
T Consensus       345 s~~~d~~i  352 (437)
T 3gre_A          345 TDEATSSI  352 (437)
T ss_dssp             EEGGGTEE
T ss_pred             ecCCCCeE
Confidence            99999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-28  Score=216.31  Aligned_cols=244  Identities=12%  Similarity=0.165  Sum_probs=184.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|+|++++|++|+.||.|++|++.....                        .+.+..+.+|.        
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~--------  104 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ--------  104 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS--------
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc--------
Confidence            4789999999999999999999999999999886542                        12456678888        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  188 (409)
                          ..|.++.|    ++.+|++++.|+.|++||  .++.......+ ..            .+....+.+ ....++.+
T Consensus       105 ----~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~-~~------------~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A          105 ----GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAH-NA------------SVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             ----SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECC-SS------------CEEEEEEEETTTTEEEEE
T ss_pred             ----cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccC-CC------------ceeEEEEccCCCCEEEEE
Confidence                89999999    356999999999999999  33333332221 11            122222222 33445544


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.+++||.     .+....+...|...+.+++|+|++. ++++ .|+.|++||++ .++.+..       +.+|.
T Consensus       162 ~~--d~~i~i~d~-----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~-~~~~~~~-------~~~~~  225 (313)
T 3odt_A          162 SA--DKTIKLWQN-----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMH-TGDVLRT-------YEGHE  225 (313)
T ss_dssp             ET--TSCEEEEET-----TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETT-TCCEEEE-------EECCS
T ss_pred             EC--CCCEEEEec-----CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECC-chhhhhh-------hhcCC
Confidence            43  889999994     3455555344899999999999998 7787 99999999998 6666665       57789


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|++++|+|++ . |++++.||.|++||+++++.    ...+..             |...|.+++|+|++++++++.|
T Consensus       226 ~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~----~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~d  286 (313)
T 3odt_A          226 SFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSL----KQVITL-------------PAISIWSVDCMSNGDIIVGSSD  286 (313)
T ss_dssp             SCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCE----EEEEEC-------------SSSCEEEEEECTTSCEEEEETT
T ss_pred             ceEEEEEEecCC-C-EEEEecCCEEEEEECCCCce----eEEEec-------------cCceEEEEEEccCCCEEEEeCC
Confidence            999999999998 4 88999999999999988754    233333             3568999999999996665567


Q ss_pred             CeEEEEEccCCCcceEE
Q 015290          348 MNLKLWDIRMDSTPVAT  364 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~  364 (409)
                      +.|++||++. ++....
T Consensus       287 g~i~iw~~~~-~~~~~~  302 (313)
T 3odt_A          287 NLVRIFSQEK-SRWASE  302 (313)
T ss_dssp             SCEEEEESCG-GGCCC-
T ss_pred             CcEEEEeCCC-Cceeeh
Confidence            9999999985 554433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=3.1e-29  Score=230.05  Aligned_cols=239  Identities=13%  Similarity=0.131  Sum_probs=172.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc-CCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      ..|++|+|+| .++.+|++|+.||+|+|||+.+++....... .+...|.++.|.+.           +..++++++.  
T Consensus       120 ~~V~~l~~~P-~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-----------~~~~l~s~s~--  185 (435)
T 4e54_B          120 RRATSLAWHP-THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-----------NTNQFYASSM--  185 (435)
T ss_dssp             SCEEEEEECS-SCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-----------CTTEEEEECS--
T ss_pred             CCEEEEEEeC-CCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-----------CCCEEEEEeC--
Confidence            7899999953 2567999999999999999987765544432 23333444444322           3345555554  


Q ss_pred             cceeEEEecCCcccceeeeeec--cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          193 NMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                      |++|++||+++.    ....+.  ..+...+.+++|+|++++|++| .||.|++||++  +..+..       +.+|...
T Consensus       186 D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~-------~~~h~~~  252 (435)
T 4e54_B          186 EGTTRLQDFKGN----ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWN-------LRMHKKK  252 (435)
T ss_dssp             SSCEEEEETTSC----EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCC-------SBCCSSC
T ss_pred             CCEEEEeeccCC----ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEE-------Eecccce
Confidence            899999999752    222221  2344567899999999999999 99999999997  333333       6889999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      |++++|+|+++.+|++|+.|+.|++||+++.+..    ..+.          ...+|...|++++|+|+|++|++++ |+
T Consensus       253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~~----------~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASFL----------YSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCCS----------BCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             EEeeeecCCCceEEEEecCcceeeEEeccccccc----ceEE----------EeeeccccccceeECCCCCeeEEEcCCC
Confidence            9999999998668999999999999999886531    1111          1245678999999999999999997 59


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      .|+|||+.. +.....+..|.......         ..+..+.|+|++.++++++
T Consensus       319 ~i~iwd~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          319 EIRVYSASQ-WDCPLGLIPHPHRHFQH---------LTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             CEEEEESSS-SSSEEEECCCCCCCCSS---------SCCCBCEECSSSSCEEEEC
T ss_pred             EEEEEECCC-CccceEEeccccccccc---------ceeEEEEEcCCCCEEEEEE
Confidence            999999986 77777777665432110         0113567777777666554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.2e-28  Score=213.69  Aligned_cols=244  Identities=17%  Similarity=0.209  Sum_probs=184.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|...|++++|+|++++||+|+.||+|++|++.+++                           .+..+.+|.        
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---------------------------~~~~~~~h~--------  109 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS--------  109 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---------------------------eEEEecCcc--------
Confidence            588899999999999999999999999999999876                           467788998        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..+.++.+    ++..+++++.++.+++|+.............            ...........+.+..++++.
T Consensus       110 ----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~s~~  169 (318)
T 4ggc_A          110 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSG------------HSQEVCGLRWAPDGRHLASGG  169 (318)
T ss_dssp             ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEEC------------CSSCEEEEEECTTSSEEEEEE
T ss_pred             ----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcC------------ccCceEEEEEcCCCCEEEEEe
Confidence                77777665    4679999999999999998766433221111            112233334445556666655


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE---Ee-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV---SA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~---~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      .  |+.|++||+.+.............+.+.|.+++++|++..++   ++ .++.|++||.+ .......        ..
T Consensus       170 ~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~-~~~~~~~--------~~  238 (318)
T 4ggc_A          170 N--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLSA--------VD  238 (318)
T ss_dssp             T--TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT-TCCEEEE--------EE
T ss_pred             c--CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc-ccccccc--------cc
Confidence            4  899999999875543333333367888999999999875443   46 78999999998 4444433        34


Q ss_pred             ccCceEEEEEeCCCCCEEEEE--eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          266 LTEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      +...+..+.|+|++ ..++++  +.|+.|++||+++++.    +..+             .+|...|++++|+|+|++|+
T Consensus       239 ~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~----~~~l-------------~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          239 AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAEL-------------KGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEE-------------CCCSSCEEEEEECTTSSCEE
T ss_pred             ceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcE----EEEE-------------cCCCCCEEEEEEcCCCCEEE
Confidence            66779999999999 766654  4799999999998764    2333             45678999999999999999


Q ss_pred             Eee-cCeEEEEEccC
Q 015290          344 SRD-YMNLKLWDIRM  357 (409)
Q Consensus       344 sg~-~~~v~iwd~~~  357 (409)
                      +|+ |++|+|||+..
T Consensus       301 S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          301 SAAADETLRLWRCFE  315 (318)
T ss_dssp             EEETTTEEEEECCSC
T ss_pred             EEecCCeEEEEECCC
Confidence            997 59999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=218.65  Aligned_cols=237  Identities=11%  Similarity=0.031  Sum_probs=166.5

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee-ecCCCccccccccce
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE-FQSHEPEFDYLKSLE  111 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~~  111 (409)
                      ..|.++.|+|+   +++|+.|++|++|+.......       ..+           ...+.+.. ..+|.          
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~-------~~~-----------~~~~~~~~~~~~~~----------  125 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI-------LDS-----------KTNKVLREIEVDSA----------  125 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE-------EET-----------TTCCEEEEEECCCS----------
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEE-------eec-----------CCcceeEEeecCCC----------
Confidence            55677778887   999999999999987643200       000           00011222 23555          


Q ss_pred             eccceEEEEEEecC--CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          112 IEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       112 ~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                        +.|.+++|  +|  ++++|++++.|++|++||+.+++......                                   
T Consensus       126 --~~v~~~~~--~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----------------------------------  166 (343)
T 3lrv_A          126 --NEIIYMYG--HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-----------------------------------  166 (343)
T ss_dssp             --SCEEEEEC--CC---CCEEEEEETTCCEEEEESSSSCEEEEEC-----------------------------------
T ss_pred             --CCEEEEEc--CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------------------------------
Confidence              78999999  67  99999999999999999998876533211                                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee-eeeecCCCcCcC-c
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD-L  266 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~-~  266 (409)
                                               ..+...+.+++|+|++.+|++| .||.|++||++ .+... ..       +.. |
T Consensus       167 -------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~-~~~~~~~~-------~~~~h  213 (343)
T 3lrv_A          167 -------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS-SPDQASSR-------FPVDE  213 (343)
T ss_dssp             -------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS-CTTSCCEE-------CCCCT
T ss_pred             -------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCCCCccE-------EeccC
Confidence                                     3455679999999999999999 99999999999 55544 44       455 9


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce--eeeEeccCCCEEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLLS  344 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~g~~l~s  344 (409)
                      ...|++++|+|++ .+|++++ ++.|++||+++++..    ..+..          +..|...+  .+++|+|+|++|++
T Consensus       214 ~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          214 EAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT----LAYPT----------YTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             TSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC----BSSCC----------CBC-----CCEEEEECTTSSEEEE
T ss_pred             CCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc----eeecc----------cccccccccceEEEECCCCCEEEE
Confidence            9999999999999 9999999 559999999987531    22221          11122333  46999999999999


Q ss_pred             ee--cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC---CCCeEEEcccCCCC
Q 015290          345 RD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~l~s~s~dg~i  408 (409)
                      ++  ++.|++|++....+....     ..+               ..++|+|   +++.|++++.||.+
T Consensus       278 ~s~~d~~i~v~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~l~~~~~d~~~  326 (343)
T 3lrv_A          278 YSNESNSLTIYKFDKKTKNWTK-----DEE---------------SALCLQSDTADFTDMDVVCGDGGI  326 (343)
T ss_dssp             EETTTTEEEEEEECTTTCSEEE-----EEE---------------EECCC----CCCCEEEEEEETTEE
T ss_pred             ecCCCCcEEEEEEcccccceEe-----cCc---------------eeEecCccccccceeEEEecCCce
Confidence            64  699999999753332222     111               3677777   77788888777754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.6e-28  Score=216.96  Aligned_cols=213  Identities=16%  Similarity=0.310  Sum_probs=169.5

Q ss_pred             cCCCcEEEEEECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           30 QDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        30 ~h~~~v~~v~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .|...|++++|+++  +++|++|+.||.|++||+.+++.                         .....+.+|.      
T Consensus        53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-------------------------~~~~~~~~~~------  101 (379)
T 3jrp_A           53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-------------------------SQIAVHAVHS------  101 (379)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS------
T ss_pred             CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-------------------------eEeeeecCCC------
Confidence            48999999999987  99999999999999999987642                         2456677888      


Q ss_pred             ccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          108 KSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                            ..|.+++|  +|+  +.+|++++.|+.|++||+..+......                                
T Consensus       102 ------~~v~~~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------------------------  141 (379)
T 3jrp_A          102 ------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------------------------------  141 (379)
T ss_dssp             ------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCTTSCCCEE--------------------------------
T ss_pred             ------cceEEEEe--CCCCCCCEEEEecCCCcEEEEecCCCCceeeE--------------------------------
Confidence                  89999999  677  899999999999999999876332110                                


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-------------CCCeEEEe-cCCeEEEEEccCCCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-------------DCETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                                                . +..|...|.+++|+|             ++.+++++ .|+.|++||++....
T Consensus       142 --------------------------~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  194 (379)
T 3jrp_A          142 --------------------------I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  194 (379)
T ss_dssp             --------------------------E-EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred             --------------------------E-ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence                                      0 156888999999999             68999999 999999999983332


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCC---CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .....    ..+.+|...|.+++|+|+   + .+|++++.||.|++||++.+..... .....           ...|..
T Consensus       195 ~~~~~----~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~-----------~~~~~~  257 (379)
T 3jrp_A          195 TYVLE----STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK-KTLLK-----------EEKFPD  257 (379)
T ss_dssp             EEEEE----EEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCCE-EEESS-----------SSCCSS
T ss_pred             ceeeE----EEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccce-eeeec-----------cccCCC
Confidence            21111    125789999999999999   7 9999999999999999988642100 01111           123467


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEEccC
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRM  357 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~  357 (409)
                      .|.+++|+|+|++|++++. +.|++||+..
T Consensus       258 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          258 VLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            8999999999999999874 9999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=2.3e-27  Score=210.61  Aligned_cols=249  Identities=14%  Similarity=0.153  Sum_probs=178.2

Q ss_pred             cCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           30 QDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        30 ~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .|...|++++|+|  ++++|++|+.||.|++||+.++...                  .....++.+..+.+|.      
T Consensus        55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~------------------~~~~~~~~~~~~~~~~------  110 (351)
T 3f3f_A           55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE------------------CSGRRWNKLCTLNDSK------  110 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCT------------------TSSCSEEEEEEECCCS------
T ss_pred             cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccc------------------ccccCcceeeeecccC------
Confidence            4899999999999  6999999999999999999876521                  0111335677788888      


Q ss_pred             ccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          108 KSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                            ..|.+++|  +|+  +.+|++++.|+.|++||+.+++..........                           
T Consensus       111 ------~~v~~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------------------  155 (351)
T 3f3f_A          111 ------GSLYSVKF--APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE---------------------------  155 (351)
T ss_dssp             ------SCEEEEEE--CCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE---------------------------
T ss_pred             ------CceeEEEE--cCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc---------------------------
Confidence                  89999999  677  99999999999999999987754332110000                           


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                                           ..........|...+.+++|+|+   +..++++ .++.+.+|+.. .+.....     .
T Consensus       156 ---------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-----~  208 (351)
T 3f3f_A          156 ---------------------MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK-DGKLHVA-----A  208 (351)
T ss_dssp             ---------------------EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT-TSCEEEE-----E
T ss_pred             ---------------------ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC-CCceeee-----e
Confidence                                 00000111467888999999997   8999999 99999777776 4443211     1


Q ss_pred             cCcCccCceEEEEEeCCCC---CEEEEEeCCCeEEEEeCCCccccccccccccc--------------------------
Q 015290          262 NMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRD--------------------------  312 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------------------------  312 (409)
                      .+.+|...|++++|+|++.   ++|++++.||.|++||++.+............                          
T Consensus       209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T 3f3f_A          209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA  288 (351)
T ss_dssp             ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred             ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence            2678999999999999973   58999999999999999875321000000000                          


Q ss_pred             ---cccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEE
Q 015290          313 ---AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       313 ---~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~  365 (409)
                         ..........+.+|...|++++|+|++++|++|+ |+.|++||+.+ ++.+..+
T Consensus       289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~  344 (351)
T 3f3f_A          289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY-SNEFKCM  344 (351)
T ss_dssp             --CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT-TSCEEEE
T ss_pred             eecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc-Ccchhhe
Confidence               0000011223567889999999999999999997 59999999986 5444433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2e-27  Score=218.00  Aligned_cols=279  Identities=7%  Similarity=0.016  Sum_probs=201.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ....+.+++|+|++.++++++.++.|++||..+++..       +               ......+.+|.         
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~-------~---------------~~~~~~~~~~~---------  169 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV-------R---------------LSPPEKYKKKL---------  169 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE-------E---------------ECCCHHHHTTC---------
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe-------e---------------ecCcccccccC---------
Confidence            3455679999998888888889999999999877631       0               00011345777         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|.+++|  ++++.++++++.|+.|++||+.+++.......+.             .......+++++..++... 
T Consensus       170 ---~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~-  230 (433)
T 3bws_A          170 ---GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG-------------KWSKILLYDPIRDLVYCSN-  230 (433)
T ss_dssp             ---CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS-------------SSEEEEEEETTTTEEEEEE-
T ss_pred             ---CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC-------------CCeeEEEEcCCCCEEEEEe-
Confidence               79999999  7899999999999999999999877665443111             1122233344444443221 


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c--------CCeEEEEEccCCCceeeeeecCCC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--------d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      ..++.|++||+.+.   +.+..+ . ....+.+++|+|+++.++++ .        |+.|++||+. .++....      
T Consensus       231 ~~~~~i~~~d~~~~---~~~~~~-~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~------  298 (433)
T 3bws_A          231 WISEDISVIDRKTK---LEIRKT-D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDT------  298 (433)
T ss_dssp             TTTTEEEEEETTTT---EEEEEC-C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEE------
T ss_pred             cCCCcEEEEECCCC---cEEEEe-c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEee------
Confidence            12789999999763   444443 3 34458999999999999887 4        6799999998 5655544      


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                        ..|...+.+++|+|++..++++++.++.|++||+.+++..    ..+..              ...+.+++|+|+|++
T Consensus       299 --~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~  358 (433)
T 3bws_A          299 --IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV--------------FDKPNTIALSPDGKY  358 (433)
T ss_dssp             --EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSSEEEEEECTTSSE
T ss_pred             --ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC--------------CCCCCeEEEcCCCCE
Confidence              2345678999999999345677789999999999876531    22222              356889999999998


Q ss_pred             EEEeec----------------CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc-
Q 015290          342 LLSRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-  404 (409)
Q Consensus       342 l~sg~~----------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~-  404 (409)
                      |++++.                |.|++||+.+ ++.+..+..+...                .+++|+|||++|++++. 
T Consensus       359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             EEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEETT
T ss_pred             EEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEECC
Confidence            887753                4999999986 7888887764432                58999999999987764 


Q ss_pred             CCCC
Q 015290          405 RRDN  408 (409)
Q Consensus       405 dg~i  408 (409)
                      |++|
T Consensus       422 d~~i  425 (433)
T 3bws_A          422 DHQI  425 (433)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            7765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.7e-27  Score=218.57  Aligned_cols=240  Identities=15%  Similarity=0.263  Sum_probs=181.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|...|.+++|  ++++|++|+.||.|++||+.+++                           .+..+.+|.        
T Consensus       171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~--------  213 (435)
T 1p22_A          171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE---------------------------MLNTLIHHC--------  213 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC---------------------------EEEEECCCC--------
T ss_pred             CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEcCCC--------
Confidence            48999999999  78899999999999999998776                           467788898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeee--ccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK--EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                          ..|.+++|  +  +..+++++.|+.|++||+.++......  .......+.++.+              ++..++.
T Consensus       214 ----~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--------------~~~~l~s  271 (435)
T 1p22_A          214 ----EAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--------------DDKYIVS  271 (435)
T ss_dssp             ----SCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--------------ETTEEEE
T ss_pred             ----CcEEEEEE--c--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--------------CCCEEEE
Confidence                89999999  3  459999999999999999877544211  1111122222221              2345555


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      ++.  |+.+++||+++   .+++..+ .+|...|.+++++  ++++++| .||.|++||++ .+..+..       +.+|
T Consensus       272 ~~~--dg~i~vwd~~~---~~~~~~~-~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~-~~~~~~~-------~~~h  335 (435)
T 1p22_A          272 ASG--DRTIKVWNTST---CEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE-CGACLRV-------LEGH  335 (435)
T ss_dssp             EET--TSEEEEEETTT---CCEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT-TCCEEEE-------ECCC
T ss_pred             EeC--CCeEEEEECCc---CcEEEEE-cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECC-CCCEEEE-------EeCC
Confidence            544  89999999976   4556665 7899999999994  6799999 99999999999 6666666       5789


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|.+++|  ++ .+|++|+.||.|++||++++.....        .........+.+|...|.+++|  ++++|++|+
T Consensus       336 ~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s  402 (435)
T 1p22_A          336 EELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRA--------PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS  402 (435)
T ss_dssp             SSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTS--------CTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred             cCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccc--------cccchheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence            999999999  56 8999999999999999876542100        0000112234567889999999  678899987


Q ss_pred             -cCeEEEEEccC
Q 015290          347 -YMNLKLWDIRM  357 (409)
Q Consensus       347 -~~~v~iwd~~~  357 (409)
                       ||.|++||+..
T Consensus       403 ~Dg~i~iwd~~~  414 (435)
T 1p22_A          403 HDDTILIWDFLN  414 (435)
T ss_dssp             SSSEEEEEC---
T ss_pred             CCCEEEEEECCC
Confidence             59999999975

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.7e-27  Score=210.07  Aligned_cols=239  Identities=10%  Similarity=0.053  Sum_probs=177.9

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce----eeeeeccCCCcccccccccccccCceeccCCCCCc-eeecc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  188 (409)
                      +.|.+++|  +|++++|++++.|+.|++|++.++.    .....  ..            ...+..+.+++++. +++.+
T Consensus        12 ~~v~~~~~--s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~------------~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A           12 DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RY------------KHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--EC------------SSCEEEEEEEESSSEEEEEE
T ss_pred             CcEEEEEE--cCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ec------------CCceEEEEECCCCCcEEEEE
Confidence            89999999  6899999999999999999998776    32222  11            22333444444555 66666


Q ss_pred             cccccceeEEEec-CCcccceeeeeeccc--cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC--------Cceeeee
Q 015290          189 EWTENMATKIANV-GNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIV  256 (409)
Q Consensus       189 ~~~~~~~i~~~~~-~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~--------~~~~~~~  256 (409)
                      ..  ++.|++|++ +....    ..+ .+  |...|.+++|+| ++.++++ .|+.|++||++..        ...+.. 
T Consensus        76 ~~--dg~i~~wd~~~~~~~----~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-  146 (342)
T 1yfq_A           76 TV--QGEILKVDLIGSPSF----QAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-  146 (342)
T ss_dssp             ET--TSCEEEECSSSSSSE----EEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-
T ss_pred             cC--CCeEEEEEeccCCce----Eec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-
Confidence            54  899999999 76422    333 67  999999999999 9999999 9999999999820        333322 


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC-ccccccccccccccccccCCcccccccccceeeeEe
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                            +. |...+.+++|+|++   +++++.|+.|++||+++ +....   ...            ...|...+.+++|
T Consensus       147 ------~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~------------~~~~~~~i~~i~~  201 (342)
T 1yfq_A          147 ------TK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIE------------ESGLKYQIRDVAL  201 (342)
T ss_dssp             ------SS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEE------------ECSCSSCEEEEEE
T ss_pred             ------Ee-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eee------------ecCCCCceeEEEE
Confidence                  33 78899999999875   99999999999999987 43210   111            1223568999999


Q ss_pred             cc-CCCEEEEeec-CeEEEEEccCC-----CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          336 AN-DGQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       336 s~-~g~~l~sg~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +| +++++++++. +.|++|+++..     .+....+..|.....      .......|.+++|+|++++|++++.||.|
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  275 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceE
Confidence            99 9999999975 99999999864     278888888865210      00011123799999999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-27  Score=232.45  Aligned_cols=213  Identities=16%  Similarity=0.299  Sum_probs=170.1

Q ss_pred             cCCCcEEEEEECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           30 QDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        30 ~h~~~v~~v~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      +|.+.|++++|+|+  +++|++|+.||.|++||+.++..                         .....+.+|.      
T Consensus        51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-------------------------~~~~~~~~h~------   99 (753)
T 3jro_A           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-------------------------SQIAVHAVHS------   99 (753)
T ss_dssp             CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS------
T ss_pred             CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-------------------------cccccccCCC------
Confidence            48999999999998  99999999999999999987642                         2456778888      


Q ss_pred             ccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          108 KSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                            ..|.+++|  +|+  +..+++++.||.|++||+.++......                                
T Consensus       100 ------~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~--------------------------------  139 (753)
T 3jro_A          100 ------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------------------------------  139 (753)
T ss_dssp             ------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCCCCE--------------------------------
T ss_pred             ------CCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCccee--------------------------------
Confidence                  89999999  677  999999999999999999876332110                                


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-------------CCCeEEEe-cCCeEEEEEccCCCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-------------DCETFVSA-DDLRINLWNLEISDQ  251 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~-~d~~i~lwd~~~~~~  251 (409)
                                                . +.+|...|.+++|+|             +++.+++| .||.|++||++....
T Consensus       140 --------------------------~-~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~  192 (753)
T 3jro_A          140 --------------------------I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  192 (753)
T ss_dssp             --------------------------E-EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred             --------------------------E-eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence                                      0 157888999999999             58999999 999999999984332


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCC---CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .....    ..+.+|...|++++|+|+   + .+|++++.||.|++||++++.....  ...          .....|..
T Consensus       193 ~~~~~----~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~--~~~----------~~~~~~~~  255 (753)
T 3jro_A          193 TYVLE----STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK--KTL----------LKEEKFPD  255 (753)
T ss_dssp             EEEEE----EEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCB--CCB----------SSSSCCSS
T ss_pred             cceee----eeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcce--eEE----------eccCCCCC
Confidence            21111    125789999999999999   7 9999999999999999988642100  000          11234567


Q ss_pred             ceeeeEeccCCCEEEEee-cCeEEEEEccC
Q 015290          329 SISDIKFANDGQHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~  357 (409)
                      .|++++|+|+|++|++|+ ||.|++||+..
T Consensus       256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          256 VLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             ceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            899999999999999987 59999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=3.9e-26  Score=206.53  Aligned_cols=257  Identities=9%  Similarity=0.091  Sum_probs=191.8

Q ss_pred             CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEec
Q 015290           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (409)
Q Consensus        45 ~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (409)
                      .++++++.|+.|++||+.+++                           .+..+..|.             .+.+++|  +
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~---------------------------~~~~~~~~~-------------~~~~~~~--s   40 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNK---------------------------VTATIPVGS-------------NPMGAVI--S   40 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE---------------------------EEEEEECSS-------------SEEEEEE--C
T ss_pred             EEEEEcCCCCEEEEEECCCCe---------------------------EEEEeecCC-------------CcceEEE--C
Confidence            467889999999999998776                           355666665             6899999  7


Q ss_pred             CCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290          125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (409)
Q Consensus       125 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (409)
                      |+++++ ++++.|+.|++||+.+++.........              .+..+.+++++..++.+.. .++.|++||+.+
T Consensus        41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------~v~~~~~spdg~~l~~~~~-~~~~v~v~d~~~  105 (391)
T 1l0q_A           41 PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--------------SPQGVAVSPDGKQVYVTNM-ASSTLSVIDTTS  105 (391)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------------SEEEEEECTTSSEEEEEET-TTTEEEEEETTT
T ss_pred             CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--------------CccceEECCCCCEEEEEEC-CCCEEEEEECCC
Confidence            999877 566799999999999888766544221              2334444555554433321 268999999986


Q ss_pred             cccceeeeeeccccccceeEEEeCCCCCeE-EEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCC
Q 015290          204 SVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (409)
Q Consensus       204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  281 (409)
                      .   +.+..+ . +...+.+++|+|+++.+ +++ .++.|++||+. .++....+       ..+ ..+.+++|+|++ +
T Consensus       106 ~---~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~-~~~~~~~~~~dg-~  170 (391)
T 1l0q_A          106 N---TVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------SVG-RSPKGIAVTPDG-T  170 (391)
T ss_dssp             T---EEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------ECC-SSEEEEEECTTS-S
T ss_pred             C---eEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEE-------ecC-CCcceEEECCCC-C
Confidence            3   444443 2 34568999999999987 567 89999999998 66666552       323 456899999999 6


Q ss_pred             EE-EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----cCeEEEEEcc
Q 015290          282 LL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIR  356 (409)
Q Consensus       282 ~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~~~v~iwd~~  356 (409)
                      .+ ++++.++.|++||+++++.    ...+..              ...+.+++|+|+|++|++++    ++.|++||+.
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTNSV----IDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE----EEEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEECCCCeE----EEEEec--------------CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            65 6778899999999988753    122222              34688999999999888775    3999999998


Q ss_pred             CCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE-EEcccCCCC
Q 015290          357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYRRDN  408 (409)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-~s~s~dg~i  408 (409)
                      + ++.+..+..+...                .+++|+|||++| ++++.|+.|
T Consensus       233 ~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v  268 (391)
T 1l0q_A          233 T-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTV  268 (391)
T ss_dssp             T-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEE
T ss_pred             C-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEE
Confidence            6 7888888776653                489999999977 677778764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.1e-26  Score=210.97  Aligned_cols=261  Identities=12%  Similarity=0.130  Sum_probs=177.2

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .|...|.+++|+| ++.+|++++.||.|++||+.+++.                           ...+. +.       
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~-~~-------  141 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT---------------------------ADVFN-FE-------  141 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE---------------------------EEEEE-CS-------
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc---------------------------ceecc-CC-------
Confidence            4899999999999 788999999999999999987652                           23333 34       


Q ss_pred             cceeccceEEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc-eee
Q 015290          109 SLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGY  186 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  186 (409)
                           ..+.++.|.| ++++.++++++.|+.|++||+.+++.......+             ...+..+.+++.+. +++
T Consensus       142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~ll~  203 (408)
T 4a11_B          142 -----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-------------RQEILAVSWSPRYDYILA  203 (408)
T ss_dssp             -----SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC-------------CSCEEEEEECSSCTTEEE
T ss_pred             -----CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-------------CCcEEEEEECCCCCcEEE
Confidence                 6899999953 225569999999999999999988765544321             22333444455554 355


Q ss_pred             cccccccceeEEEecCCcccc------------eeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290          187 HLEWTENMATKIANVGNSVHA------------RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  253 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~  253 (409)
                      ++..  ++.+++||+......            .........|...|.+++|+|++++|+++ .|+.|++||+. .+...
T Consensus       204 ~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~  280 (408)
T 4a11_B          204 TASA--DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS-NGENT  280 (408)
T ss_dssp             EEET--TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCBC
T ss_pred             EEcC--CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC-CCccc
Confidence            5554  899999999764310            01111125788999999999999999999 99999999998 44433


Q ss_pred             eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  333 (409)
                      .......  .......+........+ ..+++++.++.|++||+.+++.    +..+             .+|...|.++
T Consensus       281 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~----~~~~-------------~~~~~~v~~~  340 (408)
T 4a11_B          281 LVNYGKV--CNNSKKGLKFTVSCGCS-SEFVFVPYGSTIAVYTVYSGEQ----ITML-------------KGHYKTVDCC  340 (408)
T ss_dssp             CCCCCCC--CCCCSSCCCCEECCSSS-SCEEEEEETTEEEEEETTTCCE----EEEE-------------CCCSSCEEEE
T ss_pred             eeccccc--cccccccceeEEecCCC-ceEEEEecCCEEEEEECcCCcc----eeee-------------ccCCCeEEEE
Confidence            2211110  01111111122222333 6677778899999999988754    2333             3457789999


Q ss_pred             EeccCCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290          334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       334 ~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +|+|++++|++|+ ||.|++||+.+ ++++.....
T Consensus       341 ~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~  374 (408)
T 4a11_B          341 VFQSNFQELYSGSRDCNILAWVPSL-YEPVPDDDE  374 (408)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEECC----------
T ss_pred             EEcCCCCEEEEECCCCeEEEEeCCC-CCccCCCCc
Confidence            9999999999997 49999999986 666554443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.9e-27  Score=202.02  Aligned_cols=223  Identities=10%  Similarity=0.041  Sum_probs=147.7

Q ss_pred             CCCcEEEEEECCC----CCEEEEEecCCeEEEEeccCCcCCCCccchhhh-hhhccc--ccccCCCceeeeeeecCCCcc
Q 015290           31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSE-LEKQMD--FTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        31 h~~~v~~v~~~~~----~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      |...|.+++|+||    ++++++++.+  +++|++.+++..       .. ..++..  ..+...|..+.+..+.+|.  
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv-------~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--  178 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV-------SSSGTLSDQQVEVMTFAEDGGGKENQFLMP--  178 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEE-------EEESSSTTCEEEEEEECTTSCEEEEEEECC--
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE-------EecccCCCCcEEEEEECCCCceeeeeccCC--
Confidence            3458999999999    9999988753  666776554420       11 111111  1222334445666677777  


Q ss_pred             ccccccceeccceEEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                                ..++.++|.| .-++..|++++.|++|+|||+.+++....+..+                          
T Consensus       179 ----------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--------------------------  222 (356)
T 2w18_A          179 ----------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID--------------------------  222 (356)
T ss_dssp             ----------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC--------------------------
T ss_pred             ----------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC--------------------------
Confidence                      6788888853 237799999999999999999998766553211                          


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeE------------EEe-cCCeEEEEEccCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF------------VSA-DDLRINLWNLEIS  249 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l------------~~~-~d~~i~lwd~~~~  249 (409)
                                                      ..+...+.+++|+|+|+++            ++| .|++|++||.. +
T Consensus       223 --------------------------------~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-t  269 (356)
T 2w18_A          223 --------------------------------DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-T  269 (356)
T ss_dssp             --------------------------------C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-T
T ss_pred             --------------------------------CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-C
Confidence                                            1122356677888888765            567 89999999998 6


Q ss_pred             CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      +..+.++....  ..+|...+.+..++  + .++++++.|++|+|||+.+++.    ...+..             |...
T Consensus       270 gk~l~v~~~~~--p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~----l~tL~g-------------H~~~  327 (356)
T 2w18_A          270 TLSVGVMLYCL--PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC----TALLPP-------------VSDQ  327 (356)
T ss_dssp             TEEEEEEEECC--CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE----EEEECC-------------C--C
T ss_pred             CEEEEEEEeec--cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE----EEEecC-------------CCCC
Confidence            76665532110  13566655555554  6 8999999999999999999874    244443             3444


Q ss_pred             e-eeeEeccCCCEEEEee-cCeEEEEEc
Q 015290          330 I-SDIKFANDGQHLLSRD-YMNLKLWDI  355 (409)
Q Consensus       330 i-~~~~~s~~g~~l~sg~-~~~v~iwd~  355 (409)
                      + ..++|+|||++|++|+ |++|+|||+
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4 4689999999999998 499999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=3.7e-27  Score=211.13  Aligned_cols=242  Identities=13%  Similarity=0.160  Sum_probs=174.0

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ...|...|++++|+|++++|++|+.||.|++||+.+++.                            ..+.+|.      
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----------------------------~~~~~~~------  127 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA----------------------------IQIAQHD------  127 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------EEEEECS------
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc----------------------------eeecccc------
Confidence            344899999999999999999999999999999987752                            2355677      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|.+++|+|++++.+|++++.|+.|++||+.+++.......+.              ..........  .+..
T Consensus       128 ------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~~~~~~~--~~~~  185 (368)
T 3mmy_A          128 ------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--------------RCYCADVIYP--MAVV  185 (368)
T ss_dssp             ------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--------------CEEEEEEETT--EEEE
T ss_pred             ------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--------------CceEEEecCC--eeEE
Confidence                  89999999877899999999999999999999887655544221              1111111111  2222


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe----EEEe-cCCeEEEEEccCCC--ceeeeeecCC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET----FVSA-DDLRINLWNLEISD--QCFNIVDMKP  260 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~  260 (409)
                      +.  .++.+++|++.......  ......+...+.++++.++...    ++++ .|+.|++||++...  .....     
T Consensus       186 ~~--~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~-----  256 (368)
T 3mmy_A          186 AT--AERGLIVYQLENQPSEF--RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT-----  256 (368)
T ss_dssp             EE--GGGCEEEEECSSSCEEE--EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE-----
T ss_pred             Ee--CCCcEEEEEeccccchh--hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee-----
Confidence            22  27789999997643222  2221334455566666555444    8888 99999999998332  22333     


Q ss_pred             CcCcCccC------------ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          261 SNMDDLTE------------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       261 ~~~~~~~~------------~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                        +.+|..            .|++++|+|++ ++|++++.||.|++||+++++.    +..+             .+|..
T Consensus       257 --~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~-------------~~~~~  316 (368)
T 3mmy_A          257 --FKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTK----LKTS-------------EQLDQ  316 (368)
T ss_dssp             --EECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE----EEEC-------------CCCSS
T ss_pred             --eeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcE----EEEe-------------cCCCC
Confidence              334433            79999999999 9999999999999999998653    2223             33467


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWD  354 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd  354 (409)
                      .|.+++|+|+|++|++++. +..+.|+
T Consensus       317 ~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          317 PISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             CceEEEECCCCCeEEEEeccccccccc
Confidence            8999999999999999863 5444333

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=4.7e-27  Score=215.12  Aligned_cols=227  Identities=16%  Similarity=0.249  Sum_probs=171.5

Q ss_pred             ccCCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..|...|++++|+|++. +|++|+.||.|++|++......                    .........+.+|.      
T Consensus       178 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--------------------~~~~~~~~~~~~h~------  231 (430)
T 2xyi_A          178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE--------------------HRVIDAKNIFTGHT------  231 (430)
T ss_dssp             ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG--------------------GGEEECSEEECCCS------
T ss_pred             cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC--------------------CceeccceeecCCC------
Confidence            45899999999999988 9999999999999999874320                    00112245567888      


Q ss_pred             ccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                            ..|.+++|  +| ++.+|++++.|+.|++||++++...                                    
T Consensus       232 ------~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~------------------------------------  267 (430)
T 2xyi_A          232 ------AVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTS------------------------------------  267 (430)
T ss_dssp             ------SCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSS------------------------------------
T ss_pred             ------CCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCC------------------------------------
Confidence                  89999999  56 6789999999999999999875311                                    


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                           .++..+ ..|...|++++|+|+++ .+++| .||.|++||++.....+..       +.
T Consensus       268 ---------------------~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~-------~~  318 (430)
T 2xyi_A          268 ---------------------KPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS-------FE  318 (430)
T ss_dssp             ---------------------SCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE-------EE
T ss_pred             ---------------------cceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE-------ee
Confidence                                 111111 56888999999999987 57788 9999999999944555555       56


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL  343 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~  343 (409)
                      .|...|.+++|+|++..+|++++.||.|++||++......   .........+.....+.+|...|.+++|+|+++ +|+
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ---STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC---CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc---CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence            7899999999999985689999999999999998732110   000000011122233456788999999999999 788


Q ss_pred             Eeec-CeEEEEEccC
Q 015290          344 SRDY-MNLKLWDIRM  357 (409)
Q Consensus       344 sg~~-~~v~iwd~~~  357 (409)
                      ++++ +.|+||++..
T Consensus       396 s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEETTSEEEEEEECH
T ss_pred             EEECCCCEEEeEccc
Confidence            8875 9999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2e-27  Score=214.91  Aligned_cols=227  Identities=13%  Similarity=0.123  Sum_probs=147.9

Q ss_pred             cccCCCcEEEEEECC--------CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC
Q 015290           28 ELQDVDIVSAIEFDK--------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS   99 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~--------~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (409)
                      ..+|.+.|++|+|+|        |+++||+|+.|++|+|||+.++.                           ....+.+
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---------------------------~~~~~~~  184 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---------------------------PILAGYP  184 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE---------------------------EEEEEEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc---------------------------eeeeecC
Confidence            346999999999998        88999999999999999998665                           2445566


Q ss_pred             CCccccccccceeccceEEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC
Q 015290          100 HEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (409)
Q Consensus       100 h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (409)
                      |.            ..|.+++|  +|++ .+|++++.|++|++||+.+++...........         .....+....
T Consensus       185 ~~------------~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~---------~~~~~~s~~~  241 (393)
T 4gq1_A          185 LS------------SPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV---------KNPWLLTLNT  241 (393)
T ss_dssp             CS------------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------C---------SCCCSEEEES
T ss_pred             CC------------CCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCc---------ccceEEeccc
Confidence            76            79999999  5766 47999999999999999887654332211000         0000000000


Q ss_pred             CCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeC-CCCCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (409)
                                    ..            ...... ..+|...+.++.|+ |+++.++++ .|+++++||+. .+..... 
T Consensus       242 --------------~~------------~~~~~~-~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~-~~~~~~~-  292 (393)
T 4gq1_A          242 --------------LP------------LVNTCH-SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF-ANNDYNE-  292 (393)
T ss_dssp             --------------GG------------GC-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------
T ss_pred             --------------cc------------ceeeee-cccccccceeeeeecCCCCEEEEEeCCCCEEEEECc-cCCCCce-
Confidence                          00            000000 15788889999986 799999999 99999999998 4333322 


Q ss_pred             ecCCCcCcCccCce------------------EEEEEeC-CCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc
Q 015290          257 DMKPSNMDDLTEVI------------------TSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (409)
Q Consensus       257 ~~~~~~~~~~~~~v------------------~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  317 (409)
                            +..|...+                  ....|+| .+..++++|+.||.|++||+.+++..    ...       
T Consensus       293 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~----~~~-------  355 (393)
T 4gq1_A          293 ------ISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN----SIP-------  355 (393)
T ss_dssp             -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC----EEE-------
T ss_pred             ------EeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE----EEe-------
Confidence                  12222222                  2233443 23146778889999999999887532    111       


Q ss_pred             CCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290          318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (409)
Q Consensus       318 ~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~  356 (409)
                            .+|..+|.+++|+|||++||+++++.+.+|.+.
T Consensus       356 ------~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          356 ------IQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             ------EECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             ------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence                  234578999999999999999998778888764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8e-26  Score=208.30  Aligned_cols=255  Identities=12%  Similarity=0.110  Sum_probs=182.0

Q ss_pred             cCCCcEEEEEECCCCCEE-EEEecCCeEEEEecc--CCcCCCCccchhhhhhhcccccccCCCceeeeeeec--CCCccc
Q 015290           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF  104 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~  104 (409)
                      .|.+.|++++|+|++++| |+|+.||.|+|||+.  ++..                           +..+.  .|.   
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~---  149 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS---  149 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence            467789999999999996 899999999999998  5542                           33443  444   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC---
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---  181 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  181 (409)
                               ..|.+++|  +|++++|++++.|+.|++|++.++........         .+......+..+.++++   
T Consensus       150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~---------~~~~h~~~v~~~~~sp~~~~  209 (450)
T 2vdu_B          150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKFTQE---------PILGHVSMLTDVHLIKDSDG  209 (450)
T ss_dssp             ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSCCCC---------CSEECSSCEEEEEEEECTTS
T ss_pred             ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccccce---------eeecccCceEEEEEcCCCCC
Confidence                     78999999  79999999999999999999987754320000         00011223334445555   


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      +.+++++..  |+.|++||+.+   .+++..++.+|...|.+++|+ ++++|+++ .|+.|++||++ .++.+..+....
T Consensus       210 ~~~l~s~~~--d~~i~vwd~~~---~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~  282 (450)
T 2vdu_B          210 HQFIITSDR--DEHIKISHYPQ---CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK-TGKNLSTFDYNS  282 (450)
T ss_dssp             CEEEEEEET--TSCEEEEEESC---TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT-TCCEEEEEECHH
T ss_pred             CcEEEEEcC--CCcEEEEECCC---CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC-CCcEeeeecchh
Confidence            667776665  89999999976   445555547899999999999 99999999 99999999999 666666643210


Q ss_pred             ------------------CcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeC--CCccccccccccccccccccCC
Q 015290          261 ------------------SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDM--RQSALCDHSARILRDAAESHGS  319 (409)
Q Consensus       261 ------------------~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~  319 (409)
                                        .........|.+++|+|++ ++|++++ .++.|++||+  ..+.. ......+.        
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~-l~~~~~~~--------  352 (450)
T 2vdu_B          283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGD-LALKQIIT--------  352 (450)
T ss_dssp             HHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTC-EEEEEEEE--------
T ss_pred             hhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCc-eeeccEec--------
Confidence                              0001234578999999999 8898888 8999999999  43311 01112222        


Q ss_pred             cccccccccceeeeEeccCCCEEEEee-------cCeEEEEEccC
Q 015290          320 KSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRM  357 (409)
Q Consensus       320 ~~~~~~~~~~i~~~~~s~~g~~l~sg~-------~~~v~iwd~~~  357 (409)
                           .| ..+.+++|+|++.++++++       +..|.+|.+..
T Consensus       353 -----~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          353 -----FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             -----CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             -----cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence                 23 5799999999654444443       24488888764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.4e-24  Score=196.39  Aligned_cols=250  Identities=11%  Similarity=0.102  Sum_probs=184.1

Q ss_pred             cCCCcEEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+...+.+++|+|++++| ++++.|+.|++||..+++.                           +..+..+        
T Consensus        29 ~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~--------   73 (391)
T 1l0q_A           29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG--------   73 (391)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS--------
T ss_pred             ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC--------
Confidence            344568999999999977 6777999999999987762                           3444444        


Q ss_pred             cceeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee-e
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-Y  186 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  186 (409)
                           ..+.+++|  +|++++|+.+ +.++.|++||+.+++........              .......+++++..+ +
T Consensus        74 -----~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           74 -----SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--------------KSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             -----SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEE
T ss_pred             -----CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--------------CCcceEEECCCCCEEEE
Confidence                 47999999  7999988655 56799999999988776554321              123344455555544 3


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeE-EEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      .+.  .++.|++||+.+   .+.+..+ ..+ ..+.+++|+|+++.+ +++ .++.|++||++ .+.....+        
T Consensus       133 ~~~--~~~~v~~~d~~~---~~~~~~~-~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~--------  196 (391)
T 1l0q_A          133 TNN--GDKTVSVINTVT---KAVINTV-SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNSVIDTV--------  196 (391)
T ss_dssp             EET--TTTEEEEEETTT---TEEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------
T ss_pred             EeC--CCCEEEEEECCC---CcEEEEE-ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCeEEEEE--------
Confidence            333  378999999976   3444444 333 457899999999888 566 89999999998 56655542        


Q ss_pred             CccCceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      .+...+.+++|+|++ ++|++++   .++.|++||+++++.    ...+..              ...+.+++|+|+|++
T Consensus       197 ~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~  257 (391)
T 1l0q_A          197 KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI----TARIPV--------------GPDPAGIAVTPDGKK  257 (391)
T ss_dssp             ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE----EEEEEC--------------CSSEEEEEECTTSSE
T ss_pred             ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE----EEEEec--------------CCCccEEEEccCCCE
Confidence            245678999999999 8888777   689999999988753    233333              135788999999998


Q ss_pred             EE-Eee-cCeEEEEEccCCCcceEEEecccCc
Q 015290          342 LL-SRD-YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       342 l~-sg~-~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      |+ +++ ++.|++||+.+ ++.+..+..+..+
T Consensus       258 l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~  288 (391)
T 1l0q_A          258 VYVALSFXNTVSVIDTAT-NTITATMAVGKNP  288 (391)
T ss_dssp             EEEEETTTTEEEEEETTT-TEEEEEEECSSSE
T ss_pred             EEEEcCCCCEEEEEECCC-CcEEEEEECCcCC
Confidence            84 555 49999999986 8888888777654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=3.3e-25  Score=197.49  Aligned_cols=239  Identities=11%  Similarity=0.056  Sum_probs=159.9

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      +.|++++|  +|+|++|++|+.++ +++|++.+++........   .+.          .+.... ........+..  +
T Consensus        20 ~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~---~~~----------~~~~~~-~~~~~~~~~~~--d   80 (355)
T 3vu4_A           20 NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR---HLS----------KVRMLH-RTNYVAFVTGV--K   80 (355)
T ss_dssp             CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEEEEECS---CCC----------EEEECT-TSSEEEEECSS--T
T ss_pred             CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceeeeeecC---CeE----------EEEEcC-CCCEEEEEECC--c
Confidence            89999999  89999999888765 789999877655433211   011          111111 11122222222  5


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                      +.|++||..+   ++++..+  .+...|.+++++++.  ++++.++.|++||+....+.+..       +..   ....+
T Consensus        81 ~~v~iWd~~~---~~~~~~~--~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~-------~~~---~~~~~  143 (355)
T 3vu4_A           81 EVVHIWDDVK---KQDVSRI--KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITD-------DIR---FGGVC  143 (355)
T ss_dssp             TEEEEEETTT---TEEEEEE--ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSC-------CEE---EEEEE
T ss_pred             cEEEEEECCC---CcEEEEE--ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEE-------ecc---CCceE
Confidence            7999999976   4455544  366789999998764  55557889999999833144433       222   34456


Q ss_pred             EEeCCCCCEEEE-EeCCCeEEEEeCCCccccccccccccccccccCC-cccccccccceeeeEeccCCCEEEEeec-Ce-
Q 015290          274 EFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY-MN-  349 (409)
Q Consensus       274 ~~~p~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~-  349 (409)
                      ++++ . .++++ |+.||.|++||+++++...........  ....+ ...+.+|...|.+++|+|+|++||+|+. ++ 
T Consensus       144 ~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~--~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          144 EFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ--KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEET-T-EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             EEEc-c-EEEEeCCCcCcEEEEEECCCCCccccccccccc--cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            6777 3 33333 689999999999875421000000000  00011 3446778999999999999999999985 98 


Q ss_pred             EEEEEccCCCcceEEEe-c-ccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          350 LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |++||+++ ++++..+. + |...+               .+++|+|||++|++++.|++|
T Consensus       220 v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          220 IRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             EEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEE
T ss_pred             EEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEE
Confidence            99999986 88888888 5 77765               699999999999999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=8.9e-24  Score=193.70  Aligned_cols=239  Identities=11%  Similarity=0.087  Sum_probs=181.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|+|+++++++++.|+.|++||+.+++                           .+..+..|.        
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~---------------------------~~~~~~~~~--------  211 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA---------------------------YKATVDLTG--------  211 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---------------------------EEEEEECSS--------
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---------------------------EEEEEcCCC--------
Confidence            578899999999999999999999999999998765                           355666777        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                          ..+.+++|  +|+++.++++ +.|+.|++||+.+++........              .....+.+++++..++.+
T Consensus       212 ----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          212 ----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--------------GLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             ----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--------------SEEEEEEECTTSSEEEEE
T ss_pred             ----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--------------CCceEEEEcCCCCEEEEE
Confidence                78999999  7899888655 57999999999988765543321              123344455566565555


Q ss_pred             ccc------ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeE-EEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          189 EWT------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       189 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      ...      .++.|++||+.+.   +.+..  ..+...+.+++|+|+++.+ +++ .++.|++||+. .++....+    
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~---~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~-~~~~~~~~----  341 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKE---KLIDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK-EKKVQKSI----  341 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTT---EEEEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT-TTEEEEEE----
T ss_pred             ECCCCccccCCCeEEEEECCCC---cEEee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC-CCcEEEEe----
Confidence            432      3789999999763   33333  2456688999999999755 556 89999999998 66665552    


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeC---------------CCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSS---------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                          .+...+.+++|+|++ +++++++.               ||.|++||+.+++.    ...+..             
T Consensus       342 ----~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~----~~~~~~-------------  399 (433)
T 3bws_A          342 ----PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV----KEFWEA-------------  399 (433)
T ss_dssp             ----ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE----EEEEEC-------------
T ss_pred             ----cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcE----EEEecC-------------
Confidence                255678999999999 88887765               57999999988764    223332             


Q ss_pred             cccceeeeEeccCCCEEEEee--cCeEEEEEcc
Q 015290          326 IIASISDIKFANDGQHLLSRD--YMNLKLWDIR  356 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~--~~~v~iwd~~  356 (409)
                       ...+.+++|+|+|++|++++  ++.|++|++.
T Consensus       400 -~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          400 -GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             -SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             -CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence             24689999999999998764  5999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.3e-23  Score=191.09  Aligned_cols=221  Identities=10%  Similarity=0.039  Sum_probs=170.1

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCC---eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      ....|...|.+++|+|||++||+++.++   .|++||+.+++.                            ..+..|.  
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------~~l~~~~--  222 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------RQVASFP--  222 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------------EEEECCS--
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----------------------------EEeecCC--
Confidence            3445889999999999999999999875   999999988762                            2456666  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEE-EEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (409)
                                ..+.+++|  +|||+.|+ +++.|+  .|++||+.+++...+                            
T Consensus       223 ----------~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l----------------------------  262 (415)
T 2hqs_A          223 ----------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV----------------------------  262 (415)
T ss_dssp             ----------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEC----------------------------
T ss_pred             ----------CcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCEEeC----------------------------
Confidence                      78999999  89999888 566655  488899887654322                            


Q ss_pred             CCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-CC--eEEEEEccCCCceeeee
Q 015290          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIV  256 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~  256 (409)
                                                        ..|...+.+++|+|+|++|+++ . ++  .|++||+. .+... . 
T Consensus       263 ----------------------------------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~-~~~~~-~-  305 (415)
T 2hqs_A          263 ----------------------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN-GGAPQ-R-  305 (415)
T ss_dssp             ----------------------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-SSCCE-E-
T ss_pred             ----------------------------------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC-CCCEE-E-
Confidence                                              4566778999999999988876 4 55  67777887 44332 2 


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  333 (409)
                            +..+...+.+++|+|+| ++|++++.+   ..|.+||+.+++.     ..+..             + ..+.++
T Consensus       306 ------l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-----~~l~~-------------~-~~~~~~  359 (415)
T 2hqs_A          306 ------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLSS-------------T-FLDETP  359 (415)
T ss_dssp             ------CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-----EECCC-------------S-SSCEEE
T ss_pred             ------EecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-----EEecC-------------C-CCcCCe
Confidence                  34466788999999999 888887764   5899999988753     22222             1 268899


Q ss_pred             EeccCCCEEEEee-cC---eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          334 KFANDGQHLLSRD-YM---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       334 ~~s~~g~~l~sg~-~~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                      +|+|||++|++++ ++   .|++||+.  +.....+..|...+               .+++|+|...
T Consensus       360 ~~spdg~~l~~~s~~~~~~~l~~~d~~--g~~~~~l~~~~~~v---------------~~~~~~~~~~  410 (415)
T 2hqs_A          360 SLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV---------------KFPAWSPYLH  410 (415)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETT--SCCEEECCCSSSEE---------------EEEEECCCCC
T ss_pred             EEcCCCCEEEEEEcCCCccEEEEEECC--CCcEEEeeCCCCCC---------------cCCccccccc
Confidence            9999999998875 33   79999986  67788888887765               6999999754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.4e-22  Score=189.83  Aligned_cols=287  Identities=11%  Similarity=0.056  Sum_probs=192.0

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEec--cCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .+..++|+|||++|++++.|+.|.+||+  .+++                           .+..+..+           
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g-----------  221 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG-----------  221 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence            3889999999999999999999999999  5543                           34445533           


Q ss_pred             eccceEEEEEEecC----CCCEEEEEe-CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC-cee
Q 015290          112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHG  185 (409)
Q Consensus       112 ~~~~v~~l~~~~s~----~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  185 (409)
                        ..+..++|  +|    +|+++++++ .+++|.+||..+++........... +....+ .....+.....+++. .++
T Consensus       222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-~~~~~~-~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-VDTQTY-HPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC-SSSCCE-ESCCCEEEEEECSSSSEEE
T ss_pred             --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc-cCcccc-ccCCceEEEEECCCCCEEE
Confidence              46899999  78    999999887 5899999999988876655421100 000000 011122333334433 333


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                      .+.  ..++.|.+||........ +..  ..+...+..++|+|++++++++  .+++|.+||.. +++++..+...   .
T Consensus       296 vs~--~~~g~i~vvd~~~~~~l~-~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~-tg~l~~~i~~g---~  366 (543)
T 1nir_A          296 VNV--KETGKVLLVNYKDIDNLT-VTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG---K  366 (543)
T ss_dssp             EEE--TTTTEEEEEECTTSSSCE-EEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECS---S
T ss_pred             EEE--CCCCeEEEEEecCCCcce-eEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECC-CCeEEEeeccC---C
Confidence            333  347899999997643222 112  2355667889999999987755  68999999999 77777765432   1


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCcccc---ccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      ..|.+....+ ++|++..+++++. .|++|.+||+.+....   .+.++.             +..|...+..++++|+|
T Consensus       367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~-------------l~~~g~~~~~v~~~pdg  432 (543)
T 1nir_A          367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE-------------LQGQGGGSLFIKTHPKS  432 (543)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE-------------EECSCSCCCCEECCTTC
T ss_pred             CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE-------------EEcCCCCceEEEcCCCC
Confidence            2354443333 5787427777775 6899999999873210   111222             33345677889999999


Q ss_pred             CEEEEee--------cCeEEEEEccCCCcce-EEEe--------cccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          340 QHLLSRD--------YMNLKLWDIRMDSTPV-ATFK--------IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       340 ~~l~sg~--------~~~v~iwd~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      ++|++++        +++|.+||+.+ ++.. ..+.        .+...               +..++|+|||+.|+++
T Consensus       433 ~~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~~~~~~~~~---------------~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          433 SHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKR---------------VVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             CEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCE---------------EEEEEECSSSSEEEEE
T ss_pred             CcEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhhcccCCCCCc---------------eEeccCCCCCCEEEEE
Confidence            9999986        47999999987 5544 5542        12222               2699999999998866


Q ss_pred             c
Q 015290          403 S  403 (409)
Q Consensus       403 s  403 (409)
                      .
T Consensus       497 ~  497 (543)
T 1nir_A          497 V  497 (543)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=8.7e-23  Score=176.81  Aligned_cols=236  Identities=12%  Similarity=0.121  Sum_probs=167.5

Q ss_pred             cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccC-CcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ...|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.                           .....+|..    
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------~~~~~~~~~----   84 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------EKVDTGFAT----   84 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------EECCCTTCC----
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------eEecccccc----
Confidence            445788999999999999999986 78999999988 653                           223334421    


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEe--CCCeEEEEEcC--CceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                             ..|.+++|  +|++++|++++  .++..+||.+.  ++....+                              
T Consensus        85 -------~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------  125 (297)
T 2ojh_A           85 -------ICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM------------------------------  125 (297)
T ss_dssp             -------CBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC------------------------------
T ss_pred             -------ccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEEe------------------------------
Confidence                   57889999  79999999998  44556666553  3321111                              


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                                      ..+ ..+..++|+|+++.|+ ++ .++.+.+|+++........     
T Consensus       126 --------------------------------~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~-----  167 (297)
T 2ojh_A          126 --------------------------------TKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR-----  167 (297)
T ss_dssp             --------------------------------CSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-----
T ss_pred             --------------------------------ecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-----
Confidence                                            112 2378899999999887 56 8999999997633333333     


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                        +..+...+.+++|+|++ ++|+.++ .++.+++|++......   ...+.             .|...+..++|+|+|
T Consensus       168 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-------------~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          168 --LTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSS---VERIT-------------DSAYGDWFPHPSPSG  228 (297)
T ss_dssp             --CCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC---EEECC-------------CCSEEEEEEEECTTS
T ss_pred             --cccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCC---cEEEe-------------cCCcccCCeEECCCC
Confidence              45677889999999999 7766655 5889999987532111   12222             224578899999999


Q ss_pred             CEEEEee-c-----------CeEEEEEccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          340 QHLLSRD-Y-----------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       340 ~~l~sg~-~-----------~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ++|++++ +           +.|++||+.. ++.  +..+.+|...+               ..++|+|||++|++++.|
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEEC
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEec
Confidence            9998764 3           4699999975 544  33344555544               589999999999988877


Q ss_pred             CC
Q 015290          406 RD  407 (409)
Q Consensus       406 g~  407 (409)
                      ..
T Consensus       293 ~~  294 (297)
T 2ojh_A          293 PV  294 (297)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.4e-22  Score=182.60  Aligned_cols=213  Identities=14%  Similarity=0.125  Sum_probs=160.4

Q ss_pred             CCEEEEEecC------CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceE
Q 015290           44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (409)
Q Consensus        44 ~~~la~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (409)
                      +..++.++.+      +.|++||+++..                            ...+.+|.            ..|.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------------~~~l~~~~------------~~v~  182 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------------QFVVHRSP------------QPLM  182 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS----------------------------CEEEEEES------------SCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC----------------------------CEEEeCCC------------Ccce
Confidence            5667766654      799999997543                            34566777            7999


Q ss_pred             EEEEEecCCCCEEEEEeCCC---eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      +++|  +|+|++|++++.|+   .|++||+.+++...+                                          
T Consensus       183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------  218 (415)
T 2hqs_A          183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------  218 (415)
T ss_dssp             EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred             eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence            9999  89999999999885   999999988755332                                          


Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCC--eEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                          ..|...+.+++|+|+|+.|+ ++ .++  .|++||+. .+... .       +..|...+
T Consensus       219 --------------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~-~-------l~~~~~~~  269 (415)
T 2hqs_A          219 --------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIR-Q-------VTDGRSNN  269 (415)
T ss_dssp             --------------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEE-E-------CCCCSSCE
T ss_pred             --------------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEE-e-------CcCCCCcc
Confidence                                34566789999999999888 55 554  49999998 44442 2       56677889


Q ss_pred             EEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          271 TSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      .+++|+|+| ++|++++. ++  .|.+||+.+++.     ..+..             +...+..++|+|||++|++++ 
T Consensus       270 ~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          270 TEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             EEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-----EECCC-------------SSSEEEEEEECTTSSEEEEEEE
T ss_pred             cceEECCCC-CEEEEEECCCCCcEEEEEECCCCCE-----EEEec-------------CCCcccCeEECCCCCEEEEEEC
Confidence            999999999 88887775 44  677889887652     22211             135688999999999999775 


Q ss_pred             c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       347 ~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      +   ..|++||+.+ ++. ..+..+. .+               .+++|+|||++|++++.|+
T Consensus       331 ~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          331 NGGQQHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             CSSCEEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEET
T ss_pred             cCCceEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCC
Confidence            3   5899999985 444 3444443 22               5899999999999988776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=7.5e-22  Score=175.70  Aligned_cols=284  Identities=10%  Similarity=0.058  Sum_probs=194.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEec-------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.                           +..+...   
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~---   88 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------------TQAIHND---   88 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------------EEEEEES---
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------EEEEecC---
Confidence            4567889999999999888874       56899999987763                           2333222   


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEE-EeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                                ..+..++|  ++++++++. ...++.|.+||..+++...............    ........+.+++++
T Consensus        89 ----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~dg  152 (353)
T 3vgz_A           89 ----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE----VRPLQPRELVADDAT  152 (353)
T ss_dssp             ----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS----CCCCEEEEEEEETTT
T ss_pred             ----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc----cCCCCCceEEECCCC
Confidence                      35678899  789986655 4567999999999888766544321110000    000012233445555


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      ..++.+....++.|.+||..+   .+.+..+ ..+...+.+++|+|++++++++ .++.|.+||+. .++....+...  
T Consensus       153 ~~l~~~~~~~~~~i~~~d~~~---~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~--  225 (353)
T 3vgz_A          153 NTVYISGIGKESVIWVVDGGN---IKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL--  225 (353)
T ss_dssp             TEEEEEEESSSCEEEEEETTT---TEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC--
T ss_pred             CEEEEEecCCCceEEEEcCCC---CceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC--
Confidence            555555544577899999976   3444443 3345557889999999999998 99999999998 66666554321  


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                       ..++...+..++|+|++ ++++.++ .++.|.+||..+++..    ..+..               .....++|+|+|+
T Consensus       226 -~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~  284 (353)
T 3vgz_A          226 -DDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARN  284 (353)
T ss_dssp             -CSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTT
T ss_pred             -CCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCC
Confidence             12345678899999999 7555554 5599999999887641    22222               1125699999999


Q ss_pred             EEEEee--cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          341 HLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       341 ~l~sg~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +++.++  ++.|.+||..+ ++.+..+......                .+++|+|||++|+.+..+
T Consensus       285 ~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          285 EAYVTHRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEcc
Confidence            766554  49999999986 7777777655443                589999999977766655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.5e-22  Score=198.37  Aligned_cols=287  Identities=10%  Similarity=0.078  Sum_probs=187.4

Q ss_pred             CCcEEEEEECCCCCEEEEEec-CC-----eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc--
Q 015290           32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE--  103 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--  103 (409)
                      ...|.+++|+|||++||+++. |+     .|.+||+.+++..                           ..+..+...  
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~   88 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG   88 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence            457999999999999999998 88     8999999887631                           111111100  


Q ss_pred             ----------ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc---eeeeeeccCCCcccccccccccc
Q 015290          104 ----------FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE  170 (409)
Q Consensus       104 ----------~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  170 (409)
                                ......+.....|.+++|  +|||++|++++. +.|++||+.++   ....+..              ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------------~~  151 (741)
T 2ecf_A           89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH--------------GE  151 (741)
T ss_dssp             ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC--------------SS
T ss_pred             cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc--------------CC
Confidence                      000000000024788999  899999999987 99999999887   4433221              12


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeecccccc----------------ceeEEEeCCCCCeEE
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF----------------NINSISNNSDCETFV  234 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~l~~~~~~~~l~  234 (409)
                      .......+++++..++.+.   ++.|++|++.+.   +..+.. ..+..                .+..++|+|||++|+
T Consensus       152 ~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g---~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~  224 (741)
T 2ecf_A          152 GFATDAKLSPKGGFVSFIR---GRNLWVIDLASG---RQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA  224 (741)
T ss_dssp             SCEEEEEECTTSSEEEEEE---TTEEEEEETTTT---EEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred             cccccccCCCCCCEEEEEe---CCcEEEEecCCC---CEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEE
Confidence            3345566778888777765   568999999763   222222 22222                147799999999999


Q ss_pred             Ee-cCC---------------------------------eEEEEEccCC-CceeeeeecCCCcCcCccCceEEEEEeCCC
Q 015290          235 SA-DDL---------------------------------RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (409)
Q Consensus       235 ~~-~d~---------------------------------~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (409)
                      ++ .|+                                 .|.+||+. . +...... .    ...|...+..++| |+|
T Consensus       225 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~-~----~~~~~~~~~~~~~-pDg  297 (741)
T 2ecf_A          225 YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWID-L----GKEQDIYLARVNW-RDP  297 (741)
T ss_dssp             EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEEC-C----CSCSSEEEEEEEE-EET
T ss_pred             EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEec-C----CCCcceEEEEEEe-CCC
Confidence            87 655                                 78888987 4 4443321 0    1247778999999 999


Q ss_pred             CCEEEEEeC-----CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEE
Q 015290          280 CNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  353 (409)
Q Consensus       280 ~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iw  353 (409)
                       ++|++++.     +..|.+||+.+++..    ..+..+..         .....+..++|+|||+++++++. +.++||
T Consensus       298 -~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~~---------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~  363 (741)
T 2ecf_A          298 -QHLSFQRQSRDQKKLDLVEVTLASNQQR----VLAHETSP---------TWVPLHNSLRFLDDGSILWSSERTGFQHLY  363 (741)
T ss_dssp             -TEEEEEEEETTSSEEEEEEEETTTCCEE----EEEEEECS---------SCCCCCSCCEECTTSCEEEEECTTSSCEEE
T ss_pred             -CEEEEEEecccCCeEEEEEEECCCCceE----EEEEcCCC---------CcCCcCCceEECCCCeEEEEecCCCccEEE
Confidence             88886653     568999999887631    22222100         00013568999999998888764 777777


Q ss_pred             EccCCCcceEEEecccCcccccccccCCCCccceeeE-EEcCCCCeEEE-cccCC
Q 015290          354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFAT-GSYRR  406 (409)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~spdg~~l~s-~s~dg  406 (409)
                      .+...++ ...+..+...+               ..+ +|+|||+.|+. ++.|+
T Consensus       364 ~~~~~~~-~~~l~~~~~~v---------------~~~~~~s~dg~~l~~~~~~~~  402 (741)
T 2ecf_A          364 RIDSKGK-AAALTHGNWSV---------------DELLAVDEKAGLAYFRAGIES  402 (741)
T ss_dssp             EECSSSC-EEESCCSSSCE---------------EEEEEEETTTTEEEEEECSSC
T ss_pred             EEcCCCC-eeeeeecceEE---------------EeEeEEeCCCCEEEEEEeCCC
Confidence            7654355 66666555433               355 69999987754 44443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=9.7e-21  Score=167.01  Aligned_cols=278  Identities=8%  Similarity=0.048  Sum_probs=174.2

Q ss_pred             EEECCCCCE-EEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        38 v~~~~~~~~-la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      ..|.+++.+ +++++.++.|.+||..+++.                           ...+..+.            ..+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~------------~~~   43 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------------LNQITLGY------------DFV   43 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECCC------------CEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------------eeeEEccC------------Ccc
Confidence            346665554 67788899999999988763                           33333333            456


Q ss_pred             EEEEEEecCCCCEEEEEeC-CCeEEEEEcCCcee-eeeeccCCCcccccccccccccCcee-ccCCCCCceeeccccccc
Q 015290          117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMN-EHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  193 (409)
                       .++|  +|+++++++++. ++.|.+||+.+++. .......              ..... ..+++++.+++ .....+
T Consensus        44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~-~~~~~~  105 (331)
T 3u4y_A           44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--------------QSSMADVDITPDDQFAV-TVTGLN  105 (331)
T ss_dssp             -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--------------SSCCCCEEECTTSSEEE-ECCCSS
T ss_pred             -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--------------CCCccceEECCCCCEEE-EecCCC
Confidence             9999  799997776655 88999999998875 3332211              12222 44556666666 332222


Q ss_pred             c--eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe-EEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          194 M--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       194 ~--~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      +  .|.+||+++.   +.+..+ . ....+.+++|+|+|++++++  .++. |.+|++...+.....- ..   ......
T Consensus       106 ~~~~i~v~d~~~~---~~~~~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~---~~~~~~  176 (331)
T 3u4y_A          106 HPFNMQSYSFLKN---KFISTI-P-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE---FISGGT  176 (331)
T ss_dssp             SSCEEEEEETTTT---EEEEEE-E-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE---EECSSS
T ss_pred             CcccEEEEECCCC---CeEEEE-E-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc---cccCCC
Confidence            3  8999999763   334433 2 33456899999999866654  5677 9999998433322110 00   112334


Q ss_pred             ceEEEEEeCCCCCE-EEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          269 VITSAEFHPIYCNL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       269 ~v~~~~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      .+..++|+|+| ++ ++++..++.|.+||+.+++.. .....+..              ...+..++|+|||++|+.++ 
T Consensus       177 ~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          177 RPFNITFTPDG-NFAFVANLIGNSIGILETQNPENI-TLLNAVGT--------------NNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             SEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC--------------SSCCCCEEECTTSSEEEEECS
T ss_pred             CccceEECCCC-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccC--------------CCCCceEEECCCCCEEEEEEc
Confidence            57899999999 74 555567899999999876531 00122222              24678899999999877654 


Q ss_pred             -cCeEEEEEccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          347 -YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       347 -~~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                       ++.|.+||+.+ ++.  +..+..+....        .........++|+|||++|++++.++
T Consensus       241 ~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          241 STVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             SEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             CCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCC
Confidence             38899999975 555  44433321000        00111113589999999887655543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=3.3e-21  Score=180.50  Aligned_cols=268  Identities=9%  Similarity=0.086  Sum_probs=187.0

Q ss_pred             EECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEE
Q 015290           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (409)
Q Consensus        39 ~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  118 (409)
                      +|+|++.++++++.|++|.+||..+++                           ++..+..+.             .+..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~---------------------------~~~~i~~g~-------------~~~~  183 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK---------------------------IVKVIDTGY-------------AVHI  183 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC---------------------------EEEEEECST-------------TEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce---------------------------EEEEEecCc-------------ccce
Confidence            389999999999999999999998776                           345555443             3788


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEc--CCceeeeeeccCCCcccccccccccccCceeccCCC----CCceeecccccc
Q 015290          119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP----SFAHGYHLEWTE  192 (409)
Q Consensus       119 l~~~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  192 (409)
                      ++|  +|+|++|++++.|++|++||+  .+++.......              ......+.+++    ++.+++.+.. .
T Consensus       184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--------------g~~p~~va~sp~~~~dg~~l~v~~~-~  246 (543)
T 1nir_A          184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--------------GIEARSVESSKFKGYEDRYTIAGAY-W  246 (543)
T ss_dssp             EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--------------CSEEEEEEECCSTTCTTTEEEEEEE-E
T ss_pred             EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--------------CCCcceEEeCCCcCCCCCEEEEEEc-c
Confidence            999  899999999999999999999  67665544331              12233444555    6666666542 2


Q ss_pred             cceeEEEecCCcccceeeeeecc-c--------c-ccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCC
Q 015290          193 NMATKIANVGNSVHARCQKVYPH-A--------H-DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~-~--------~-~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      +++|.+||..+.   ++++.+.. +        | ...+..+.++|++..++. . .++.|.+||+. ....+....   
T Consensus       247 ~~~v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~-~~~~l~~~~---  319 (543)
T 1nir_A          247 PPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLTVTS---  319 (543)
T ss_dssp             SSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT-TSSSCEEEE---
T ss_pred             CCeEEEEecccc---ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec-CCCcceeEE---
Confidence            678999998763   34333311 1        2 236889999998766654 5 89999999998 433333110   


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEE-EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC-
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-  338 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-  338 (409)
                        + .+...+..+.|+|+| ++|+ ++..+++|.+||..++++.    ..+.. ..        ..|......+ ++|+ 
T Consensus       320 --i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~-g~--------~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          320 --I-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDV-GK--------TPHPGRGANF-VHPKY  381 (543)
T ss_dssp             --E-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEEC-SS--------SBCCTTCEEE-EETTT
T ss_pred             --e-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----Eeecc-CC--------CCCCCCCccc-CCCCC
Confidence              1 244567889999999 7655 4556899999999998642    22322 00        1122222222 4777 


Q ss_pred             CCEEEEee--cCeEEEEEccCC------CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          339 GQHLLSRD--YMNLKLWDIRMD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       339 g~~l~sg~--~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      |.+++++.  +++|.+||+.+.      .++++++.+|....               ..++++|||++|++++
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECC
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEec
Confidence            66777764  499999999752      57889999887654               4799999999999987

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.4e-20  Score=166.62  Aligned_cols=281  Identities=12%  Similarity=0.145  Sum_probs=175.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecC-CeEEEEecc--CCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..|...+.+++|+|+|++|++++.+ +.|.+|++.  ++..                         +.+..+..+     
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~-----   83 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP-----   83 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS-----
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC-----
Confidence            4467789999999999999988876 999999997  3331                         123333332     


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCc---eeeeeeccCCCcccccccccccccCceeccCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                              ..+..++|  +|++++|++++. ++.|.+||+..+   .......              .......+.++++
T Consensus        84 --------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~d  139 (343)
T 1ri6_A           84 --------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPD  139 (343)
T ss_dssp             --------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTT
T ss_pred             --------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccccccc--------------CCCCceEEEECCC
Confidence                    36789999  799998877664 889999999533   2222211              1112233344555


Q ss_pred             CceeecccccccceeEEEecCCcccceeee--eeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccC-CCce--ee
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEI-SDQC--FN  254 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~-~~~~--~~  254 (409)
                      +..++.+. ..++.+.+|++..........  .........+..++|+|+++++++ + .++.|.+|++.. .+..  ..
T Consensus       140 g~~l~~~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~  218 (343)
T 1ri6_A          140 NRTLWVPA-LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  218 (343)
T ss_dssp             SSEEEEEE-GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             CCEEEEec-CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence            55554433 136789999997622222111  121233457889999999997754 5 789999999962 2222  22


Q ss_pred             eeecCCCcCcCccCceEEEEEeCCCCCEEE-EEeCCCeEEEEeCCC--ccccccccccccccccccCCccccccccccee
Q 015290          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                      .+...+.. ......+..++|+|++ ++|+ ++..++.|.+||+..  +..  .....+..              ...+.
T Consensus       219 ~~~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~--~~~~~~~~--------------~~~~~  280 (343)
T 1ri6_A          219 TLDMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVL--SKEGFQPT--------------ETQPR  280 (343)
T ss_dssp             EEECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCE--EEEEEEEC--------------SSSCC
T ss_pred             eccccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCce--EEeeeecC--------------CCccc
Confidence            21111000 0113467789999999 6665 556799999999983  221  11111221              12378


Q ss_pred             eeEeccCCCEEEEee-c-CeEEEEEccCC-C--cceEEEecccCcccccccccCCCCccceeeEEEcCCCCe
Q 015290          332 DIKFANDGQHLLSRD-Y-MNLKLWDIRMD-S--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  398 (409)
Q Consensus       332 ~~~~s~~g~~l~sg~-~-~~v~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  398 (409)
                      .++|+|+|++|++++ + +.|.+|+++.. +  +.+..+.....+                .+++|.|+.+.
T Consensus       281 ~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p----------------~~i~~~~~~~~  336 (343)
T 1ri6_A          281 GFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGP----------------MWVVVNAHEGG  336 (343)
T ss_dssp             CEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSC----------------CEEEEEEEC--
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCC----------------eeEEEEcccCC
Confidence            899999999888875 4 99999966521 3  234444443333                48888887553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=6.4e-22  Score=193.27  Aligned_cols=282  Identities=10%  Similarity=0.011  Sum_probs=180.1

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .+.+++|+|||+++++ +.||.|++||+.+++.                           ...+.+|...         .
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------~~~~~~~~~~---------~   60 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------TVLIEGKKIE---------S   60 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------EEEECTTTTT---------T
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------EEEecccccc---------c
Confidence            4678999999998876 6899999999998763                           3344555410         0


Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                      ..|.+++|  ||||++|++++.+         +.+.+||+.+++...+....           .....+....+++++..
T Consensus        61 ~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----------~~~~~~~~~~~SPdG~~  127 (723)
T 1xfd_A           61 LRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-----------VSNAKLQYAGWGPKGQQ  127 (723)
T ss_dssp             TTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-----------CCSCCCSBCCBCSSTTC
T ss_pred             cccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-----------cccccccccEECCCCCE
Confidence            14899999  8999999999764         78889999988763332110           01112445667778877


Q ss_pred             eecccccccceeEEEecCCcccceeeeeecccccc------------------ceeEEEeCCCCCeEEEe-cCC------
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF------------------NINSISNNSDCETFVSA-DDL------  239 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~l~~~~~~~~l~~~-~d~------  239 (409)
                      ++.+.   ++.|++|++.+..   ..+.. ..+..                  .+.+++|+|||+.|+++ .++      
T Consensus       128 la~~~---~~~i~~~~~~~g~---~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          128 LIFIF---ENNIYYCAHVGKQ---AIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             EEEEE---TTEEEEESSSSSC---CEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             EEEEE---CCeEEEEECCCCc---eEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence            77766   3689999997633   33322 22222                  23789999999999987 443      


Q ss_pred             ----------------------------eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---
Q 015290          240 ----------------------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---  288 (409)
Q Consensus       240 ----------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---  288 (409)
                                                  .|++||+. .+.....+... .....+...+.+++|+||| +++++.+.   
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~  277 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPP-DDPRMREYYITMVKWATST-KVAVTWLNRAQ  277 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCC-CCGGGSSEEEEEEEESSSS-EEEEEEEETTS
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCC-ccCCCccceeEEEEEeCCC-eEEEEEEcCCC
Confidence                                        78888887 44432332100 0112236678999999999 88876643   


Q ss_pred             -CCeEEEEeCCCccccccccccccccccccCCcccccccccce----eeeEeccCCCEEEEe-e-c-C------eEEEEE
Q 015290          289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI----SDIKFANDGQHLLSR-D-Y-M------NLKLWD  354 (409)
Q Consensus       289 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~s~~g~~l~sg-~-~-~------~v~iwd  354 (409)
                       +..|.+||+.+++..    ..+..+            +...+    ..++|+|||+.|+.. + . +      .|++||
T Consensus       278 ~~~~i~~~d~~~g~~~----~~~~~~------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          278 NVSILTLCDATTGVCT----KKHEDE------------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CEEEEEEEETTTCCEE----EEEEEE------------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CeEEEEEEeCCCCcce----EEEEec------------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence             357999999887631    222220            01223    378999999977754 3 2 6      567777


Q ss_pred             ccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          355 IRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       355 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +...+..  ...+..+...+.              ..++|+|||+.|+..+.+
T Consensus       342 ~~~~~~~~~~~~l~~~~~~~~--------------~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          342 SQPNSSNDNIQSITSGDWDVT--------------KILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             SSCCSSSCCCCBSCCSSSCEE--------------EEEEEETTTTEEEEEESS
T ss_pred             ccCCCCccceeEeecCCeEEE--------------eeeEEcCCCCEEEEEEcC
Confidence            3222331  333332221110              136999999999866554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4.9e-22  Score=181.19  Aligned_cols=229  Identities=10%  Similarity=-0.012  Sum_probs=152.7

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...++.+++++++.++++++.++ ++||+..........+.                 ....+...       .....+.
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~~   90 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-----------------DPNKIVDK-------VQGLLVP   90 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-----------------CTTCEEEC-------CCCEEEC
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-----------------Cccccccc-------Ccccccc
Confidence            45689999999999999999887 89988653211000000                 00000000       0011122


Q ss_pred             eccceEEEEEEecCCCCEEE----EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      +...|.+++|  ++++++|+    +++.|++|++||+.++.......   ..                            
T Consensus        91 ~~~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~---~~----------------------------  137 (434)
T 2oit_A           91 MKFPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ---KR----------------------------  137 (434)
T ss_dssp             CSSCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS---CC----------------------------
T ss_pred             CCCcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcCC---cc----------------------------
Confidence            2378999999  79999999    78889999999987541100000   00                            


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                             .           ...... +.+|...|.+++|+|+ +.+|+++ .||+|++||++ .+.....       ..+
T Consensus       138 -------~-----------~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~-~~~~~~~-------~~~  190 (434)
T 2oit_A          138 -------P-----------FAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT-ETVKVCA-------TLP  190 (434)
T ss_dssp             -------C-----------SEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES-SSEEEEE-------EEC
T ss_pred             -------e-----------eeeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC-CCcceee-------ccC
Confidence                   0           001111 2679999999999998 7889999 99999999999 4443322       355


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |...|++++|+|+| ++|++|+.||.|++||++ ++..    ..+..|..      .-..|...+.+++|++++.++++.
T Consensus       191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEE
Confidence            88899999999999 999999999999999998 3221    22222100      001234589999999999888654


Q ss_pred             e--cC------eEEEEEccC
Q 015290          346 D--YM------NLKLWDIRM  357 (409)
Q Consensus       346 ~--~~------~v~iwd~~~  357 (409)
                      +  +|      .+++|++++
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCC
T ss_pred             ccCCCccCCCCceEEEEecc
Confidence            3  22      399999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.1e-20  Score=165.50  Aligned_cols=248  Identities=10%  Similarity=0.071  Sum_probs=155.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC-CeEEEEEcC--CceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ..+.+++|  +|++++|++++.+ +.|++|++.  ++..........            ......+.+++++..++.+..
T Consensus        38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL------------PGSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC------------SSCCSEEEECTTSSEEEEEET
T ss_pred             CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc------------CCCCcEEEEcCCCCEEEEEec
Confidence            67889999  7999999988876 999999997  555443322111            112233344555555443332


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeee--ecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~--~~~~~~~~~~  266 (409)
                       .++.+.+|++...........+ . ....+.+++|+|++++++++  .++.|.+||+...+......  ..    ....
T Consensus       104 -~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~  176 (343)
T 1ri6_A          104 -NAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TTVE  176 (343)
T ss_dssp             -TTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----ECST
T ss_pred             -CCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----ccCC
Confidence             2678999999533333444443 3 33458899999999877765  79999999998324432211  00    1112


Q ss_pred             cCceEEEEEeCCCCCEEE-EEeCCCeEEEEeCCC--ccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~-s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ...+..++|+|++ ++++ ++..++.|.+||+..  ++..  .......   .+..    ......+..++|+|+|++|+
T Consensus       177 ~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~---~~~~----~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          177 GAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDM---MPEN----FSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEEC---SCTT----CCSCCCEEEEEECTTSSEEE
T ss_pred             CCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccc---cCcc----ccccCCccceEECCCCCEEE
Confidence            3467899999999 7554 555889999999954  3210  0011110   0000    00123566899999999887


Q ss_pred             Eee--cCeEEEEEccCC---CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc-cCCCC
Q 015290          344 SRD--YMNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YRRDN  408 (409)
Q Consensus       344 sg~--~~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s-~dg~i  408 (409)
                      ++.  ++.|++||+...   .+.+..+..+...                ..++|+|||++|++++ .|+.|
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEE
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeE
Confidence            543  499999999731   2334444443332                4899999999888776 45543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=5e-21  Score=170.09  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=162.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.++..                         +.+..+..+.     
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~-----   85 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG-----   85 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES-----
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC-----
Confidence            3456678899999999 555544   68999999976542                         2333334444     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcC-CceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                             ..+..++|  +|+|++|++++ .++.|.+|++. ++............                         
T Consensus        86 -------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-------------------------  131 (347)
T 3hfq_A           86 -------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG-------------------------  131 (347)
T ss_dssp             -------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-------------------------
T ss_pred             -------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-------------------------
Confidence                   67889999  79999888887 78999999995 33322221100000                         


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (409)
                                            ..+.   ...+...+.+++|+|+++.+++. .++.|.+|++...+.........    
T Consensus       132 ----------------------~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----  182 (347)
T 3hfq_A          132 ----------------------HGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT----  182 (347)
T ss_dssp             ----------------------CCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE----
T ss_pred             ----------------------CCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE----
Confidence                                  0000   01234467899999999966666 78999999998334322211000    


Q ss_pred             cCccCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCC--ccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          264 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      ......+..++|+|+| +++ ++...++.|.+|++..  ++..  ....+......      +. ....+..++|+|||+
T Consensus       183 ~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~~-~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD------YT-AHNGAAAIRLSHDGH  252 (347)
T ss_dssp             CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT------CC-SCCEEEEEEECTTSC
T ss_pred             cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC------CC-CCCcceeEEECCCCC
Confidence            1122357789999999 754 4466789999999874  3311  01111110000      00 013578899999999


Q ss_pred             EEEEe-e-cCeEEEEEccCCC--cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          341 HLLSR-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       341 ~l~sg-~-~~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +|+++ . ++.|.+|++...+  +.+..+..+....               ..++|+|||++|++++.+
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcC
Confidence            88654 4 4999999996423  3344444433322               589999999998887755

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=5.3e-21  Score=181.95  Aligned_cols=260  Identities=11%  Similarity=0.037  Sum_probs=171.1

Q ss_pred             CCcEEEEEECCCCCEEEEEec-CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+|++++|+|||++||+++. ||+++||++++++.                            ..+..|..        
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~~--------   64 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREPI--------   64 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSCC--------
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeecccc--------
Confidence            567999999999999999887 99999999866542                            23333330        


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCC---ceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                         ..+..++|  +|| +.+++++.   +...++|.+..   +........   .          .........++....
T Consensus        65 ---~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~---~----------~~~~~~~s~dg~~~~  125 (582)
T 3o4h_A           65 ---NSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV---K----------PMRILSGVDTGEAVV  125 (582)
T ss_dssp             ---SEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS---C----------SBEEEEEEECSSCEE
T ss_pred             ---cccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCC---C----------CceeeeeCCCCCeEE
Confidence               47899999  788 67777765   55566765543   222211110   0          000111111122222


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC----CeEEEEEccCCCceeeeeecC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~~~~~~  259 (409)
                      +..+.   ++.+.+||+++.   ++.+.. . +..  .+++|+|||++++++ .+    +.|++||+. +++.. .    
T Consensus       126 ~~s~~---~~~~~l~d~~~g---~~~~l~-~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~-~g~~~-~----  189 (582)
T 3o4h_A          126 FTGAT---EDRVALYALDGG---GLRELA-R-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS-SGGLR-V----  189 (582)
T ss_dssp             EEEEC---SSCEEEEEEETT---EEEEEE-E-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETT-TCCCE-E----
T ss_pred             EEecC---CCCceEEEccCC---cEEEee-c-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC-CCCce-E----
Confidence            22222   334459998763   332322 2 222  789999999999976 55    789999988 45443 2    


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEeCCC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeE---
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---  334 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---  334 (409)
                         +..|...+..++|+||| +.|+++..++  .|++||+.+++.     ..+..             |...+..++   
T Consensus       190 ---l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~-----~~~~~-------------~~~~~~~~~~~~  247 (582)
T 3o4h_A          190 ---FDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV-----EDLEL-------------PSKDFSSYRPTA  247 (582)
T ss_dssp             ---ECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE-----EECCC-------------SCSHHHHHCCSE
T ss_pred             ---eecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE-----EEccC-------------CCcChhhhhhcc
Confidence               46677889999999999 9999888888  899999988763     22222             233455556   


Q ss_pred             -----eccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          335 -----FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       335 -----~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                           |+|||.++++++. +.+++|++   ++...   .....+               .+++|+ ||+++++++.+.
T Consensus       248 ~~~~~~spdg~~~~~~~~~g~~~l~~~---g~~~~---~~~~~v---------------~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREGRSAVFID---GERVE---APQGNH---------------GRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEET---TEEEC---CCSSEE---------------EEEEEE-TTEEEEEEEETT
T ss_pred             ccceeEcCCCcEEEEEEcCCcEEEEEE---CCeec---cCCCce---------------EEEEec-CCEEEEEEcCCC
Confidence                 9999988888865 99999998   44332   122222               589999 999999888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=7.4e-21  Score=186.28  Aligned_cols=281  Identities=9%  Similarity=0.056  Sum_probs=184.9

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCC---cCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGG---KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .|.+++|+|||++|++++. +.|.+||+.++   ..                            ..+..|.         
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------~~l~~~~---------  151 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------RQLTHGE---------  151 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------CBCCCSS---------
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------EEcccCC---------
Confidence            4789999999999999986 89999999887   42                            2355665         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccc---cccccccCceeccCCCCCceeec
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE---NTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                         ..+..++|  +|||++|++++. +.|++||+.+++...+............   .............+++++..++.
T Consensus       152 ---~~~~~~~~--SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~  225 (741)
T 2ecf_A          152 ---GFATDAKL--SPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY  225 (741)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred             ---cccccccC--CCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence               78999999  899999998874 6899999998876654332111000000   00000011234455666666655


Q ss_pred             ccccc-------------------------------cceeEEEecCC-cccceeeeeecc-ccccceeEEEeCCCCCeEE
Q 015290          188 LEWTE-------------------------------NMATKIANVGN-SVHARCQKVYPH-AHDFNINSISNNSDCETFV  234 (409)
Q Consensus       188 ~~~~~-------------------------------~~~i~~~~~~~-~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~  234 (409)
                      +....                               ...+.+||+.+ ...   ...... .|...+..++| |||++|+
T Consensus       226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~  301 (741)
T 2ecf_A          226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLS  301 (741)
T ss_dssp             EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred             EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEE
Confidence            54311                               11677888765 432   222111 47788999999 9999998


Q ss_pred             Ee-c-----CCeEEEEEccCCCceeeeeecCCCcCcCccC----ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc
Q 015290          235 SA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTE----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (409)
Q Consensus       235 ~~-~-----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  304 (409)
                      ++ .     +..|++||+. ++.....+       ..+..    .+.+++|+|+| +++++++.||.++||.+.....  
T Consensus       302 ~~~~~~~~~~~~i~~~d~~-~g~~~~~~-------~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~--  370 (741)
T 2ecf_A          302 FQRQSRDQKKLDLVEVTLA-SNQQRVLA-------HETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK--  370 (741)
T ss_dssp             EEEEETTSSEEEEEEEETT-TCCEEEEE-------EEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--
T ss_pred             EEEecccCCeEEEEEEECC-CCceEEEE-------EcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--
Confidence            75 3     5679999998 55555442       22221    34688999999 8999999999888887653110  


Q ss_pred             cccccccccccccCCcccccccccceeee-EeccCCCEEEE-eec-C--eEEEEEccCCCcceEEEecccCccccccccc
Q 015290          305 HSARILRDAAESHGSKSFFTEIIASISDI-KFANDGQHLLS-RDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (409)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~l~s-g~~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (409)
                        ...+..             |...+..+ .|+|+|+.|+. +++ +  .++||++...+.....+.. ...+       
T Consensus       371 --~~~l~~-------------~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~-------  427 (741)
T 2ecf_A          371 --AAALTH-------------GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGM-------  427 (741)
T ss_dssp             --EEESCC-------------SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSE-------
T ss_pred             --eeeeee-------------cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCc-------
Confidence              122222             24467776 59999997764 443 4  8999998754555666654 2222       


Q ss_pred             CCCCccceeeEEEcCCCCeEEEccc
Q 015290          380 NNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       380 ~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                              ..++|||||++|+....
T Consensus       428 --------~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          428 --------HSASFARNASVYVDSWS  444 (741)
T ss_dssp             --------EEEEECTTSSEEEEEEE
T ss_pred             --------eEEEECCCCCEEEEEec
Confidence                    58999999998886543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=2.3e-20  Score=189.07  Aligned_cols=280  Identities=11%  Similarity=0.074  Sum_probs=195.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|...+.++.|+++ .++++++.|+.++||.+.....                          ....+..|.       
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~-------  245 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT-------  245 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC-------
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC-------
Confidence            358889999999998 6777888889999998764221                          123344444       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCC-CCCceeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  187 (409)
                            .+..++|  +|+|+.|+++. ++.|.+|++...... .....  ..............+....++ +++..++.
T Consensus       246 ------~~~~~~~--SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~--~~~~~~~~~~~~~~v~~~~~S~pdG~~la~  313 (1045)
T 1k32_A          246 ------DYYPRHL--NTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIG--DLESPEDRIISIPSKFAEDFSPLDGDLIAF  313 (1045)
T ss_dssp             ------SSCEEEE--EESSSCEEEEE-TTEEEEECTTTCCEE-ECCCC--CCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred             ------CcceeeE--cCCCCEEEEEe-CCEEEEecCCceEee-eeccC--cccccccccccccccceeeecCCCCCEEEE
Confidence                  3566788  78999888874 899999999554433 11110  000000001112234445556 66666666


Q ss_pred             ccccccceeEEEecCCcccceeeeeecccccc-ceeEEEeCCCCCeEEEe-cCCeEE-EEEccCCCceeeeeecCCCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~-~d~~i~-lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      +.   ++.+.+|+.....   ... + ..|.. .+..++|+ +|+.++++ .++.+. +||+. .+....        +.
T Consensus       314 ~~---~~~i~~~~~~~~~---~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~--------l~  375 (1045)
T 1k32_A          314 VS---RGQAFIQDVSGTY---VLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK--------FE  375 (1045)
T ss_dssp             EE---TTEEEEECTTSSB---EEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE--------CC
T ss_pred             EE---cCEEEEEcCCCCc---eEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE--------ec
Confidence            55   6789999987532   222 2 45666 88999999 99999988 877888 88987 444332        33


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|...+..++|+|+| ++|++++.++.|++||+.+++..    .....             |...+..++|+|||++|++
T Consensus       376 ~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEE
T ss_pred             CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEE
Confidence            677889999999999 99999999999999999887641    22222             3567899999999999987


Q ss_pred             eec-C----------eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          345 RDY-M----------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       345 g~~-~----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ++. +          .|++||+.. ++ ...+..|....               ..++|+|||++|++++.++.
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCC
T ss_pred             EecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccC
Confidence            753 3          899999975 54 55666565443               58999999999998887553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=8.3e-20  Score=166.47  Aligned_cols=229  Identities=9%  Similarity=0.085  Sum_probs=147.5

Q ss_pred             ccCCCcEEEEEECCCCCEEE----EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      +.+...|++++|+|+|++||    +|+.|+.|+|||+.+.....    ..            .......+..+.+|.   
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~----~~------------~~~~~~~~~~~~~h~---  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA----KQ------------QKRPFAYHKLLKDAG---  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT----CS------------SCCCSEEEECCCSGG---
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC----cC------------CcceeeeeeccCCCC---
Confidence            34667899999999999999    78899999999987641000    00            000111245567788   


Q ss_pred             cccccceeccceEEEEEEecCC-CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                               ..|.+++|  +|+ +.+|++++.||+|++||++++.....                               
T Consensus       150 ---------~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-------------------------------  187 (434)
T 2oit_A          150 ---------GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVCA-------------------------------  187 (434)
T ss_dssp             ---------GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEEE-------------------------------
T ss_pred             ---------CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcceee-------------------------------
Confidence                     89999999  576 78999999999999999987633211                               


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                                                    ..+|...|.+++|+|+|++|++| .||.|++||.+  +.....+......
T Consensus       188 ------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~  235 (434)
T 2oit_A          188 ------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFY  235 (434)
T ss_dssp             ------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTC
T ss_pred             ------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCccc
Confidence                                          14578899999999999999999 99999999998  3333333222111


Q ss_pred             CcCccCceEEEEEeCCCCCEEEE-EeCCC------eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s-~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                      ...|...+.+++|++++ .++++ .+.+|      .+++|+++..+...  ...+... ..+  ...+.+.+.+-..+.+
T Consensus       236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~-~~~--~~~~~~~r~~~~~~~~  309 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNF-MEP--CYGSCTERQHHYYLSY  309 (434)
T ss_dssp             CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEEC-CCS--SCCCCSSSCCCEEEEE
T ss_pred             CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEec-ccC--CCCCCCCcCcceeeeh
Confidence            12344589999999987 65544 33443      38999998653110  0111110 000  0001111222223444


Q ss_pred             ccCCCEEEEee-c-CeEEEEEcc
Q 015290          336 ANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       336 s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      -++.+++++++ . ..|.|....
T Consensus       310 l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          310 IEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             EGGGTEEEEEETTCSBCEEEEEC
T ss_pred             hccCCEEEEecCCCCceeEEEec
Confidence            47777777664 2 667777654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=5.2e-20  Score=186.46  Aligned_cols=285  Identities=9%  Similarity=0.060  Sum_probs=191.4

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecC------CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCC
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (409)
                      ....|...+.+++|||||++||+++.+      ..|.+|++.+++                            ...+..|
T Consensus        47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~----------------------------~~~lt~~   98 (1045)
T 1k32_A           47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----------------------------IKRITYF   98 (1045)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----------------------------EEECCCC
T ss_pred             EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC----------------------------eEEcccC
Confidence            344588999999999999999988654      378999988765                            3456777


Q ss_pred             Cccccccccceeccce-------EEEEEEecCCCCEEEEEeCC------CeEEEEEcCCceeeeeeccCCC---------
Q 015290          101 EPEFDYLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHF---------  158 (409)
Q Consensus       101 ~~~~~~~~~~~~~~~v-------~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~---------  158 (409)
                      .            ..+       .+++|  +|||+.+++++.+      ..|.+|++.++....+......         
T Consensus        99 ~------------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l  164 (1045)
T 1k32_A           99 S------------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRR  164 (1045)
T ss_dssp             C------------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEE
T ss_pred             C------------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEE
Confidence            7            566       89999  8999977777654      3578888877654432211000         


Q ss_pred             ---------------------------------------ccccccccccc--------cc--Cce---------------
Q 015290          159 ---------------------------------------PFVSSENTLLA--------EK--NFM---------------  174 (409)
Q Consensus       159 ---------------------------------------~~~~~~~~~~~--------~~--~~~---------------  174 (409)
                                                             ..+.+..+...        ++  .+.               
T Consensus       165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~  244 (1045)
T 1k32_A          165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSF  244 (1045)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred             EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCC
Confidence                                                   00000000000        00  000               


Q ss_pred             ----eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccc-----------cccceeEEEeC-CCCCeEEEecC
Q 015290          175 ----NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA-----------HDFNINSISNN-SDCETFVSADD  238 (409)
Q Consensus       175 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~l~~~~d  238 (409)
                          ...+++++..++.+   .++.+.+|+++.    ..+..+ ..           |...+.+++|+ |+|+.|+++.+
T Consensus       245 ~~~~~~~~SpDG~~la~~---~~~~i~~~d~~~----~~l~~l-~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~  316 (1045)
T 1k32_A          245 TDYYPRHLNTDGRRILFS---KGGSIYIFNPDT----EKIEKI-EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR  316 (1045)
T ss_dssp             CSSCEEEEEESSSCEEEE---ETTEEEEECTTT----CCEEEC-CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET
T ss_pred             CCcceeeEcCCCCEEEEE---eCCEEEEecCCc----eEeeee-ccCcccccccccccccccceeeecCCCCCEEEEEEc
Confidence                00111122222222   356788888732    122222 22           34578999999 99999998877


Q ss_pred             CeEEEEEccCCCceeeeeecCCCcCcCccC-ceEEEEEeCCCCCEEEEEeCCCeEE-EEeCCCccccccccccccccccc
Q 015290          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSAEFHPIYCNLLAYSSSRGFVR-LVDMRQSALCDHSARILRDAAES  316 (409)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~  316 (409)
                      +.|.+|++. .+....        +..|.. .+..++|+ +| +.|++++.++.+. +||+..++.     ..+..    
T Consensus       317 ~~i~~~~~~-~~~~~~--------~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~-----~~l~~----  376 (1045)
T 1k32_A          317 GQAFIQDVS-GTYVLK--------VPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKA-----EKFEE----  376 (1045)
T ss_dssp             TEEEEECTT-SSBEEE--------CSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCE-----EECCC----
T ss_pred             CEEEEEcCC-CCceEE--------ccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCc-----eEecC----
Confidence            899999988 444332        345666 89999999 98 8899888888888 899877542     11112    


Q ss_pred             cCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC
Q 015290          317 HGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  395 (409)
Q Consensus       317 ~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  395 (409)
                               |...+..++|+|||++|++++. +.|++||+.+ ++....+.+|...+               .+++||||
T Consensus       377 ---------~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v---------------~~~~~SpD  431 (1045)
T 1k32_A          377 ---------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMI---------------TDFTISDN  431 (1045)
T ss_dssp             ---------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCC---------------CCEEECTT
T ss_pred             ---------CccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCc---------------cceEECCC
Confidence                     2457899999999999999875 9999999985 77776776776654               48999999


Q ss_pred             CCeEEEcccCC
Q 015290          396 GLHFATGSYRR  406 (409)
Q Consensus       396 g~~l~s~s~dg  406 (409)
                      |++|++++.++
T Consensus       432 G~~la~~~~~~  442 (1045)
T 1k32_A          432 SRFIAYGFPLK  442 (1045)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEEecCc
Confidence            99999887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=4.9e-19  Score=156.04  Aligned_cols=259  Identities=9%  Similarity=0.012  Sum_probs=164.7

Q ss_pred             CCcEEEEEECCCCCEEEEEec-CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ...+ .++|+|+|+++++++. ++.|.+||..+++.                          ....+..+.         
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------~~~~~~~~~---------   83 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------KVVAIQEGQ---------   83 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------EEEEEEECS---------
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------eEEecccCC---------
Confidence            4556 9999999997766665 88999999987762                          133344444         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCC---eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                         .+..+++|  +|++++++++..++   .|.+||+.+++........              .....+.+++++.+++.
T Consensus        84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--------------YDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--------------TTEEEEEECTTSSCEEE
T ss_pred             ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--------------CCccceEECCCCCEEEE
Confidence               44555999  79999999555442   8999999988776554321              11234445566655544


Q ss_pred             ccccccce-eEEEecCCcccceee-eeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCce---eeeeecCC
Q 015290          188 LEWTENMA-TKIANVGNSVHARCQ-KVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQC---FNIVDMKP  260 (409)
Q Consensus       188 ~~~~~~~~-i~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~---~~~~~~~~  260 (409)
                      .... ++. +.+|++......... ... ......+..++|+|++++++. + .++.|.+||+. .+..   +..+    
T Consensus       145 ~~~~-~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~-~~~~~~~~~~~----  217 (331)
T 3u4y_A          145 IDRS-SANTVRRFKIDADGVLFDTGQEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ-NPENITLLNAV----  217 (331)
T ss_dssp             EEET-TTTEEEEEEECTTCCEEEEEEEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS-STTSCEEEEEE----
T ss_pred             EecC-CCceEEEEEECCCCcEeecCCcc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC-CCcccceeeec----
Confidence            4332 355 999998752211111 111 133455789999999996655 5 78999999998 5555   4442    


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                         . ....+..++|+|+| ++++.+ ..++.|.+||+.+++...  +..+..   .   .............++|+|||
T Consensus       218 ---~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~--~~~~~~---~---~~~~~~~~~~~~~~~~spdg  284 (331)
T 3u4y_A          218 ---G-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSF--VKSFGH---G---LLIDPRPLFGANQMALNKTE  284 (331)
T ss_dssp             ---E-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEE--EEEEEC---C---CCCCCGGGTTCCCEEECTTS
T ss_pred             ---c-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceee--eccccc---c---cccCCCCcccccceEECCCC
Confidence               2 23556789999999 755544 457889999998876411  011111   0   00000011223568999999


Q ss_pred             CEEEEee-c-CeEEEEEccCCCcceEEEec
Q 015290          340 QHLLSRD-Y-MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       340 ~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~  367 (409)
                      ++|++++ + +.|.+||+.  .+.+..+.+
T Consensus       285 ~~l~v~~~~~~~v~v~d~~--~~~~~~~~~  312 (331)
T 3u4y_A          285 TKLFISANISRELKVFTIS--GKVVGYVAG  312 (331)
T ss_dssp             SEEEEEETTTTEEEEEETT--SCEEEECTT
T ss_pred             CEEEEecCCCCcEEEEEec--CCcccceec
Confidence            9887654 4 899999997  344444433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=3.6e-20  Score=160.22  Aligned_cols=215  Identities=12%  Similarity=0.125  Sum_probs=150.5

Q ss_pred             EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCC
Q 015290           49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  128 (409)
Q Consensus        49 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~  128 (409)
                      .++.|+.|++||+.+++.                            ..+..|.            ..|.+++|  +|+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~   54 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK   54 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred             CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence            356789999999987752                            2344566            78999999  89999


Q ss_pred             EEEEEeCCCeEEEEEcCC-ceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccc
Q 015290          129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  207 (409)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (409)
                      +|++++ ++.|++||+.+ ++......                                                     
T Consensus        55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~-----------------------------------------------------   80 (297)
T 2ojh_A           55 YLLLNS-EGLLYRLSLAGDPSPEKVDT-----------------------------------------------------   80 (297)
T ss_dssp             EEEEEE-TTEEEEEESSSCCSCEECCC-----------------------------------------------------
T ss_pred             EEEEEc-CCeEEEEeCCCCCCceEecc-----------------------------------------------------
Confidence            999887 78999999988 65433211                                                     


Q ss_pred             eeeeeeccccccceeEEEeCCCCCeEEEe-cC--CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                             ..+...+.+++|+|++++|+++ .+  +...||.+.........       +..+ ..+..++|+|++ +.|+
T Consensus        81 -------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~  144 (297)
T 2ojh_A           81 -------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFT  144 (297)
T ss_dssp             -------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEE
T ss_pred             -------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEE
Confidence                   1223567889999999999987 33  45666655422222322       2223 348899999999 7666


Q ss_pred             -EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--cCeEEEEEccCCCcc
Q 015290          285 -YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP  361 (409)
Q Consensus       285 -s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--~~~v~iwd~~~~~~~  361 (409)
                       +++.++.+++|+++.....   ...+.             .+...+.+++|+|+|++|+.++  ++.++||++...+..
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~---~~~~~-------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~  208 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGV---ETRLT-------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS  208 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCC---EEECC-------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEECCCCceEEEEEECCCCc---ceEcc-------------cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence             7888999999986432111   11111             2245789999999999888664  488999998744566


Q ss_pred             eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      +..+..+...+               ..++|+|||++|++++.++
T Consensus       209 ~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          209 VERITDSAYGD---------------WFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             EEECCCCSEEE---------------EEEEECTTSSEEEEEEEET
T ss_pred             cEEEecCCccc---------------CCeEECCCCCEEEEEEcCC
Confidence            66666555433               5899999999999888763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=7.2e-20  Score=178.25  Aligned_cols=285  Identities=11%  Similarity=0.061  Sum_probs=181.0

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..|.+++|+|| ++++.+. ++.|++||+.+++.                            ..+..+.           
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~----------------------------~~l~~~~-----------  120 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV----------------------------TYLFDTN-----------  120 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence            56999999999 6666554 59999999987652                            2334444           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC-----ceeeeeeccCCCccccccc-ccccccCceeccCCCCCceee
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSEN-TLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  186 (409)
                       ..+.+++|  +|||+.|+++ .|+.|++||+.+     ++................. ............+++++..++
T Consensus       121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la  196 (706)
T 2z3z_A          121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA  196 (706)
T ss_dssp             -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred             -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence             57888999  8999999985 679999999988     7655433221111000000 000011134455667777666


Q ss_pred             cccc-------------------------------cccceeEEEecCCcccceeeeeec-cccccceeEEEeCCCCCeEE
Q 015290          187 HLEW-------------------------------TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFV  234 (409)
Q Consensus       187 ~~~~-------------------------------~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~  234 (409)
                      .+..                               ..+..+.+||+.+..   ...... ..+...+.+++|+|||+.|+
T Consensus       197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE---EEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc---eEeeccCCCCceeEeeEEEECCCCEEE
Confidence            6542                               134589999997643   222221 25667899999999999998


Q ss_pred             Ee-cCC-----eEEEEEccCCC-ceeeeeecCCCcCcCccCceEEEEEeC--CCCCEEEEEeCCCeEEEEeCC-Cccccc
Q 015290          235 SA-DDL-----RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMR-QSALCD  304 (409)
Q Consensus       235 ~~-~d~-----~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~s~dg~i~iwd~~-~~~~~~  304 (409)
                      ++ .++     .|.+||+. ++ .........   .......+.+++|+|  +| +++++++.|+.+++|++. .++.  
T Consensus       274 ~~~~~~~~~~~~v~~~d~~-~g~~~~~~~~~~---~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~--  346 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAE-TGRFVRTLFVET---DKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL--  346 (706)
T ss_dssp             EEEECTTSCEEEEEEEETT-TCCEEEEEEEEE---CSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE--
T ss_pred             EEEeCCCCCeeEEEEEECC-CCceeeEEEEcc---CCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE--
Confidence            86 654     89999998 55 332221100   011112246789999  99 899999999999999875 3221  


Q ss_pred             cccccccccccccCCcccccccccceee-eEeccCCCEEEEee-c-C----eEEEEEccCCCcceEEEecccCccccccc
Q 015290          305 HSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSRD-Y-M----NLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (409)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~sg~-~-~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  377 (409)
                        ...+..             +...+.. ++|+|+|+.|+.++ + +    .|..||+.. ++ ...+. +...+     
T Consensus       347 --~~~l~~-------------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~~-----  403 (706)
T 2z3z_A          347 --IRQVTK-------------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESGM-----  403 (706)
T ss_dssp             --EEECCC-------------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSSE-----
T ss_pred             --EEecCC-------------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCce-----
Confidence              122222             2345665 79999999887553 3 4    566667653 33 33333 33222     


Q ss_pred             ccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          378 LYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       378 ~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                                .+++|||||++|+..+.+
T Consensus       404 ----------~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          404 ----------HRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             ----------EEEEECTTSSEEEEEEEC
T ss_pred             ----------EEEEECCCCCEEEEEecC
Confidence                      589999999988876443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=2.7e-19  Score=157.91  Aligned_cols=265  Identities=10%  Similarity=0.075  Sum_probs=175.0

Q ss_pred             CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCCccccccccceecc-ceEEEEEE
Q 015290           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC  122 (409)
Q Consensus        45 ~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~l~~~  122 (409)
                      ++|++++.++.|.+||..+++.                           +..+. ++.            . .+..++| 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~-   41 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMV-   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEE-
T ss_pred             cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEE-
Confidence            5789999999999999987652                           23332 221            1 4778999 


Q ss_pred             ecCCCCEEE-EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc----------
Q 015290          123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT----------  191 (409)
Q Consensus       123 ~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  191 (409)
                       +|+++.++ ++..++.|.+||+.+++...........        ........+.+++++..++.+...          
T Consensus        42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccc
Confidence             79997765 5566789999999988766544321100        000122233445555555555311          


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                      .++.|.+||+.+.   +....+ . ....+.+++|+|++++++++ ++.|.+||+. .++....+...     .....  
T Consensus       113 ~~~~i~v~d~~~~---~~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~~~-----~~~~~--  178 (337)
T 1pby_B          113 QPTRVALYDAETL---SRRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKPIQ-----SWEAE--  178 (337)
T ss_dssp             CCCEEEEEETTTT---EEEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEECST-----TTTTT--
T ss_pred             cCceEEEEECCCC---cEEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeeecc-----ccCCC--
Confidence            3689999999763   333333 2 23457889999999988887 6789999998 66655543211     11122  


Q ss_pred             EEEEeCCCCCEEEEEe-CCC-----------------------eEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          272 SAEFHPIYCNLLAYSS-SRG-----------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s-~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                       +.|+|++ ..++..+ .++                       .|.+||+.+++..     ....           ..+.
T Consensus       179 -~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~-----------~~~~  240 (337)
T 1pby_B          179 -TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREV-----------RIMD  240 (337)
T ss_dssp             -TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEEE-----------EECS
T ss_pred             -ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eeec-----------CCCC
Confidence             2678988 5444333 333                       4689998886531     1111           1223


Q ss_pred             cceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ..+..++|+|||++|+++ ++.|++||+.+ ++.+..+..+...                .+++|+|||++|++++.++.
T Consensus       241 ~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~  302 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECTTSCEEEEESBSSE
T ss_pred             CceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------eeEEECCCCCEEEEEcCCCc
Confidence            467789999999999988 79999999985 7777777654433                48999999999998887775


Q ss_pred             C
Q 015290          408 N  408 (409)
Q Consensus       408 i  408 (409)
                      |
T Consensus       303 i  303 (337)
T 1pby_B          303 L  303 (337)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=1.2e-19  Score=177.13  Aligned_cols=291  Identities=10%  Similarity=0.106  Sum_probs=174.5

Q ss_pred             cEEEEEECCCCCEEEEEecC---------CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           34 IVSAIEFDKTGDYLAVGDRG---------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .|.+++|||||++||+++.+         +.|.+||+.+++.                         +.+....+|.   
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------------------------~~l~~~~~~~---  113 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-------------------------QSLDPPEVSN---  113 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-------------------------EECCCTTCCS---
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-------------------------EeccCCcccc---
Confidence            48999999999999999764         7888999988763                         1122233444   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccc-cc----ccccccCceeccCC
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS-EN----TLLAEKNFMNEHNP  179 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~  179 (409)
                               ..+..++|  ||||+.|++++. +.|++||+.+++...+........+.. ..    .....+......++
T Consensus       114 ---------~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S  181 (723)
T 1xfd_A          114 ---------AKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (723)
T ss_dssp             ---------CCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ---------ccccccEE--CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC
Confidence                     56888999  899999999886 789999999887665543221110000 00    00000111334455


Q ss_pred             CCCceeeccccc--------------------------------ccceeEEEecCCcccceeeee--eccccccceeEEE
Q 015290          180 PSFAHGYHLEWT--------------------------------ENMATKIANVGNSVHARCQKV--YPHAHDFNINSIS  225 (409)
Q Consensus       180 ~~~~~~~~~~~~--------------------------------~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~  225 (409)
                      +++..++.+...                                .+..+++||+.+......+..  ....+...+..++
T Consensus       182 pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~  261 (723)
T 1xfd_A          182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (723)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE
Confidence            555555544321                                123799999976432111110  0012367789999


Q ss_pred             eCCCCCeEEEe-c----CCeEEEEEccCCCceeeeeecCCCcCcCccCce----EEEEEeCCCCCEEEE--EeCCC----
Q 015290          226 NNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI----TSAEFHPIYCNLLAY--SSSRG----  290 (409)
Q Consensus       226 ~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l~s--~s~dg----  290 (409)
                      |+|||+++++. .    +..|++||+. +++....+.      ..+...+    ..++|+|+| +.|+.  +..++    
T Consensus       262 ~SpDg~~l~~~~~~~~~~~~i~~~d~~-~g~~~~~~~------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~  333 (723)
T 1xfd_A          262 WATSTKVAVTWLNRAQNVSILTLCDAT-TGVCTKKHE------DESEAWLHRQNEEPVFSKDG-RKFFFIRAIPQGGRGK  333 (723)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETT-TCCEEEEEE------EECSSCCCCCCCCCEECTTS-CSEEEEEEECCSSSSC
T ss_pred             EeCCCeEEEEEEcCCCCeEEEEEEeCC-CCcceEEEE------eccCCEEeccCCCceEcCCC-CeEEEEEecccCCCcc
Confidence            99999988765 3    3579999998 555544421      1122333    378999999 65554  45666    


Q ss_pred             --eEEEEe-CCCccccccccccccccccccCCccccccccccee-eeEeccCCCEEEEe-ec---CeEEEEEccCCCc-c
Q 015290          291 --FVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSR-DY---MNLKLWDIRMDST-P  361 (409)
Q Consensus       291 --~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~sg-~~---~~v~iwd~~~~~~-~  361 (409)
                        .|.+|| ...+.. . ....+..             +...+. .++|+|||++|+.. .+   +.++||++...+. .
T Consensus       334 ~~~l~~~d~~~~~~~-~-~~~~l~~-------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~  398 (723)
T 1xfd_A          334 FYHITVSSSQPNSSN-D-NIQSITS-------------GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN  398 (723)
T ss_dssp             EEEEEEECSSCCSSS-C-CCCBSCC-------------SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred             eeEEEEEeccCCCCc-c-ceeEeec-------------CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence              566677 333320 0 0011111             012333 36999999998754 33   7899999875332 2


Q ss_pred             eEEEec---ccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          362 VATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       362 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      ...+..   +...+               ..++|+|||++|+..
T Consensus       399 ~~~l~~~~~~~~~~---------------~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          399 RQCLSCDLVENCTY---------------FSASFSHSMDFFLLK  427 (723)
T ss_dssp             CBCSSTTSSSSCCC---------------CEEEECTTSSEEEEE
T ss_pred             cceecccccCCCCe---------------EEEEECCCCCEEEEE
Confidence            222322   22222               489999999988764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=2.6e-19  Score=158.86  Aligned_cols=245  Identities=9%  Similarity=0.049  Sum_probs=161.3

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      .++++++++++++++.++.|.+||..+++.                           +..+..+..           ..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~-----------~~~   45 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPDK-----------FGP   45 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSSC-----------CSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCCC-----------CCC
Confidence            456888999999999999999999987652                           333332210           257


Q ss_pred             EEEEEEecCCCCEEE-EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      ..++|  +|++++++ ++..++.|.+||+.+++..........+                                    
T Consensus        46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------   87 (349)
T 1jmx_B           46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------   87 (349)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred             ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence            78999  79998665 4557899999999887655432210000                                    


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC------------CeEEEEEccCCCceeeeeecCCCc
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------------~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                                         ......+..++|+|+|++++++ .+            +.|.+||+. ++.....+.     
T Consensus        88 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----  142 (349)
T 1jmx_B           88 -------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVR-----  142 (349)
T ss_dssp             -------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSE-----
T ss_pred             -------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC-Cccccceee-----
Confidence                               0012346789999999999988 55            999999998 433222110     


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccc-cc--------------CCcc------
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SH--------------GSKS------  321 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~--------------~~~~------  321 (409)
                      ...+...+.+++|+|+| + +++++.  .|.+||+.+++..    ..+..+.. .+              ....      
T Consensus       143 ~~~~~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (349)
T 1jmx_B          143 TFPMPRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  214 (349)
T ss_dssp             EEECCSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             eccCCCcccceeECCCC-c-EEEccC--cEEEEeCCCCcee----ccccccccCCccccCccceeeecCCCcceeEEeee
Confidence            11123357889999999 7 444443  4999999887642    11111000 00              0000      


Q ss_pred             ----------------------------------cccccccceeeeEecc-CCCEEEEeecCeEEEEEccCCCcceEEEe
Q 015290          322 ----------------------------------FFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       322 ----------------------------------~~~~~~~~i~~~~~s~-~g~~l~sg~~~~v~iwd~~~~~~~~~~~~  366 (409)
                                                        .+..+...+..++|+| +|++|+++ ++.|.+||+.+ ++.+..+.
T Consensus       215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~  292 (349)
T 1jmx_B          215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAAN  292 (349)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEE
T ss_pred             eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEc
Confidence                                              0001123466788999 99999988 89999999986 77777776


Q ss_pred             cccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .....                .+++|+|||++|++++.++.|
T Consensus       293 ~~~~~----------------~~~~~s~dg~~l~~~~~~~~v  318 (349)
T 1jmx_B          293 LDHTY----------------YCVAFDKKGDKLYLGGTFNDL  318 (349)
T ss_dssp             CSSCC----------------CEEEECSSSSCEEEESBSSEE
T ss_pred             CCCCc----------------cceEECCCCCEEEEecCCCeE
Confidence            44333                489999999999888777654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=3.2e-19  Score=160.92  Aligned_cols=288  Identities=11%  Similarity=0.038  Sum_probs=169.5

Q ss_pred             CCCcEEE-----EEECCCCCEEEEEec-CCe--EEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc
Q 015290           31 DVDIVSA-----IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (409)
Q Consensus        31 h~~~v~~-----v~~~~~~~~la~~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (409)
                      |......     .+|+|||++||.++. +|.  |.+||+.+++.                           .....++. 
T Consensus        29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~-   80 (388)
T 3pe7_A           29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG-   80 (388)
T ss_dssp             TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC-
T ss_pred             CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC-
Confidence            4444555     889999999999887 674  77778877652                           23334444 


Q ss_pred             cccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                                 ..+..+.|  +|||+.|+.++.++.|++||+.+++...+....... +..          .....++++
T Consensus        81 -----------~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~-~~~----------~~~~~~~dg  136 (388)
T 3pe7_A           81 -----------DNTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW-VGY----------GTWVANSDC  136 (388)
T ss_dssp             -----------BCSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE-EEE----------EEEEECTTS
T ss_pred             -----------CCccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc-ccc----------cceeECCCC
Confidence                       44556779  899999999999999999999988766554322110 000          000112222


Q ss_pred             ceeec--------------------ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cC--
Q 015290          183 AHGYH--------------------LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD--  238 (409)
Q Consensus       183 ~~~~~--------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d--  238 (409)
                      ..++.                    .....+..|.+||+.+..   ... + ..+...+..++|+| +|+.|+.. .+  
T Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~-l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~  211 (388)
T 3pe7_A          137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STV-I-LQENQWLGHPIYRPYDDSTVAFCHEGPH  211 (388)
T ss_dssp             SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEE-E-EEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred             CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEE-e-ecCCccccccEECCCCCCEEEEEEecCC
Confidence            22221                    011234578999987642   222 2 34556788999999 99988876 42  


Q ss_pred             ----CeEEEEEccCCCceeeeeecCCCcCcCcc--CceEEEEEeCCCCCEEEEEeC-CC----eEEEEeCCCcccccccc
Q 015290          239 ----LRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSS-RG----FVRLVDMRQSALCDHSA  307 (409)
Q Consensus       239 ----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~  307 (409)
                          ..|.++|.. .+.. ..       +..+.  ..+..++|+|+| +.|+..+. ++    .|.+||+.+++.     
T Consensus       212 ~~~~~~l~~~d~~-~~~~-~~-------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~-----  276 (388)
T 3pe7_A          212 DLVDARMWLINED-GTNM-RK-------VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLEN-----  276 (388)
T ss_dssp             TTSSCSEEEEETT-SCCC-EE-------SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCE-----
T ss_pred             CCCcceEEEEeCC-CCce-EE-------eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCce-----
Confidence                367777776 3332 22       22233  357789999999 76655432 22    399999988763     


Q ss_pred             ccccccccccCCcccccccc-cceeeeEeccCCCEEEEe---------e-cCeEEEEEccCCCcceEEEecccCcccccc
Q 015290          308 RILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (409)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~sg---------~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  376 (409)
                      +.+.....        ..|. .....++|+|||+.|+..         . +..|++||+.. ++ +..+..+......  
T Consensus       277 ~~l~~~~~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~--  344 (388)
T 3pe7_A          277 RQLTSMPA--------CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKV--  344 (388)
T ss_dssp             EEEEEECC--------EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCC--
T ss_pred             EEEEcCCC--------ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCcccc--
Confidence            11111000        0000 012334799999988743         2 37899999974 44 4455555431000  


Q ss_pred             cccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          377 DLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                       ++ .+....+..++|+|||+.|+..+.
T Consensus       345 -~~-~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          345 -FE-GDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             -BT-TBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             -cc-cccccCCCCccCCCCCCEEEEEec
Confidence             00 000001148999999998887664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=181.83  Aligned_cols=236  Identities=13%  Similarity=0.087  Sum_probs=154.3

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      +++|+|||++++++ .|+.|++||+.+++.                           ...+.+|..     .    ...+
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------~~~~~~~~~-----~----~~~~   62 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------YTILSNRTM-----K----SVNA   62 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------EEEECHHHH-----H----TTTC
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------EEEEccccc-----c----ccce
Confidence            78999999766655 699999999998763                           223333330     0    0148


Q ss_pred             EEEEEEecCCCCEEEEEeC---------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      .+++|  ||||++|++++.         ++.|++||+.+++.....                                  
T Consensus        63 ~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~----------------------------------  106 (719)
T 1z68_A           63 SNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN----------------------------------  106 (719)
T ss_dssp             SEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS----------------------------------
T ss_pred             eeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce----------------------------------
Confidence            89999  899999998876         688999998877552100                                  


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                                  .....+..++|+|||+.|+++.++.|++|++. .+......      ..++.
T Consensus       107 ----------------------------~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~------~~~~~  151 (719)
T 1z68_A          107 ----------------------------ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQIT------FNGRE  151 (719)
T ss_dssp             ----------------------------CCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECC------CCCBT
T ss_pred             ----------------------------ecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEe------cCCCc
Confidence                                        00134677999999999999977899999998 45444321      12222


Q ss_pred             Cce-----------------EEEEEeCCCCCEEEEEeCCC----------------------------------eEEEEe
Q 015290          268 EVI-----------------TSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVD  296 (409)
Q Consensus       268 ~~v-----------------~~~~~~p~~~~~l~s~s~dg----------------------------------~i~iwd  296 (409)
                      ..+                 .+++|+||| ++|++++.|.                                  .|++||
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d  230 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID  230 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             CCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence            212                 489999999 9999887652                                  788899


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-----CeEEEEE----ccCCCcceEEE--
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF--  365 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-----~~v~iwd----~~~~~~~~~~~--  365 (409)
                      +.+++..    ..+..     .....+.+|...+..++|+||++++++..+     ..|.+||    +.+ +++...+  
T Consensus       231 ~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~  300 (719)
T 1z68_A          231 TTYPAYV----GPQEV-----PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEH  300 (719)
T ss_dssp             SSCHHHH----CCEEC-----CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEE
T ss_pred             CCCCCcc----ceeEc-----cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEec
Confidence            8876421    00000     000113345678999999999988777432     3588899    654 4443333  


Q ss_pred             --ecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          366 --KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       366 --~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                        .+|...+...          ....++|+|||+.|+.
T Consensus       301 ~~~~~~~~~~~~----------~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          301 IEESRTGWAGGF----------FVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEECSSSCSSSS----------SCCCCEECTTSSCEEE
T ss_pred             ccccCCceEccc----------cCCccEECCCCCeEEE
Confidence              3444433100          0016899999996654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.5e-17  Score=148.52  Aligned_cols=265  Identities=9%  Similarity=-0.007  Sum_probs=159.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEecC----CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      +...+..++|+|||++|++++.+    +.|.+|+++....                       ..+.+.....+.     
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~-----   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG-----   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence            45677789999999999999875    7999999876311                       112233333333     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCCceeeeee-cc-CCCcccccccccccccCceeccCCCCCc
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIK-EM-DHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                             .....+++    ++++|++++ .++.|.+|++......... .. .... ...............+.+++++.
T Consensus       100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A          100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG-SGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC-CCSCTTTCSSCCEEEEEECTTSS
T ss_pred             -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC-CCCCccccCCCcceEEEECCCCC
Confidence                   45666665    677777765 6889999999754322111 00 0000 00000000011223345566666


Q ss_pred             eeecccccccceeEEEecCCccc------ceee---eeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCce
Q 015290          184 HGYHLEWTENMATKIANVGNSVH------ARCQ---KVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC  252 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~------~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~  252 (409)
                      +++.... .++.+++|++.....      ....   ..........+..++|+|+|++++++  .++.|.+|++. .+..
T Consensus       168 ~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-~g~~  245 (361)
T 3scy_A          168 YLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-DGML  245 (361)
T ss_dssp             EEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-TTEE
T ss_pred             EEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-CCce
Confidence            5544332 356899998875432      1110   11113345567899999999987765  68999999998 5543


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC--CCeEEEEeCC--CccccccccccccccccccCCccccccccc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~--dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .......  ....+......++|+|+| ++|+++..  ++.|.+|++.  +++.     .....          +.. ..
T Consensus       246 ~~~~~~~--~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~-----~~~~~----------~~~-g~  306 (361)
T 3scy_A          246 DEIQTVA--ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTL-----TKVGY----------QLT-GI  306 (361)
T ss_dssp             EEEEEEE--SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCE-----EEEEE----------EEC-SS
T ss_pred             EEeEEEe--cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcE-----EEeeE----------ecC-CC
Confidence            2221111  123344557899999999 87766554  5899999986  3331     11111          000 23


Q ss_pred             ceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          329 SISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      .+..++|+|||++|++++ + +.|.+|++.
T Consensus       307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          307 HPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            577899999999998876 4 999997665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=5.8e-19  Score=172.43  Aligned_cols=243  Identities=12%  Similarity=0.105  Sum_probs=155.1

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      ...++.|+|||++++++  ||.|++||+.+++.                           ...+.+|...     .  ..
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------~~~~~~~~~~-----~--~~   61 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------SVFLENSTFD-----E--FG   61 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------EEEECTTTTT-----T--CC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------EEEEechhhh-----h--hc
Confidence            45689999999999886  89999999998763                           3445666511     0  00


Q ss_pred             cceEEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                      ....++.|  ||||++|+.++.+         +.+.+||+.+++...+                                
T Consensus        62 ~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l--------------------------------  107 (740)
T 4a5s_A           62 HSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE--------------------------------  107 (740)
T ss_dssp             SCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--------------------------------
T ss_pred             ccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc--------------------------------
Confidence            23345888  8999999998876         3455777776654321                                


Q ss_pred             eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                                                    ..+...+...+|||||+.|+.+.++.|++|++. .+...+..      ..
T Consensus       108 ------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt------~~  150 (740)
T 4a5s_A          108 ------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRIT------WT  150 (740)
T ss_dssp             ------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECC------SC
T ss_pred             ------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEc------CC
Confidence                                          345667899999999999999877899999998 44443321      22


Q ss_pred             CccCc-----------------eEEEEEeCCCCCEEEEEeCCC------------------------------------e
Q 015290          265 DLTEV-----------------ITSAEFHPIYCNLLAYSSSRG------------------------------------F  291 (409)
Q Consensus       265 ~~~~~-----------------v~~~~~~p~~~~~l~s~s~dg------------------------------------~  291 (409)
                      ++...                 ..++.||||| +.||.++.|.                                    .
T Consensus       151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             CCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence            22222                 2358999999 9888876432                                    2


Q ss_pred             EEEEeCCC---ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----c-CeEEEEEccCCCc---
Q 015290          292 VRLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST---  360 (409)
Q Consensus       292 i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~-~~v~iwd~~~~~~---  360 (409)
                      |++||+.+   ++.. . ...+..       ...+.+|...+..++|+|||++++...    . ..|++||+.+ ++   
T Consensus       230 l~v~d~~~~~~~~~~-~-~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~  299 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNA-T-SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRW  299 (740)
T ss_dssp             EEEEETTSCCSSSCC-C-EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEE
T ss_pred             EEEEECCCCCCCCcc-e-EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Ccccc
Confidence            44555544   3100 0 000000       000113567899999999999776542    2 4799999986 54   


Q ss_pred             -c--eEEE--ecccCcccccccccCCCCccceeeEEEcCCCCeEE-Eccc
Q 015290          361 -P--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY  404 (409)
Q Consensus       361 -~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-s~s~  404 (409)
                       +  +..+  .++...+..          ......+|+|||+.|+ ..+.
T Consensus       300 ~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~  339 (740)
T 4a5s_A          300 NCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISN  339 (740)
T ss_dssp             EECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEEC
T ss_pred             ceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEc
Confidence             1  1122  345444310          0013689999999877 5553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.2e-17  Score=148.98  Aligned_cols=245  Identities=8%  Similarity=0.009  Sum_probs=145.5

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC----CeEEEEEcCC--ceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      ..+..++|  +|+|++|++++.+    +.|.+|++..  +...........           .........  ++.+++.
T Consensus        50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~-----------~~~p~~~~~--dg~~l~~  114 (361)
T 3scy_A           50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM-----------GADPCYLTT--NGKNIVT  114 (361)
T ss_dssp             SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS-----------SSCEEEEEE--CSSEEEE
T ss_pred             CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC-----------CCCcEEEEE--CCCEEEE
Confidence            57788999  8999999999876    7999999875  444433221100           001111111  2233332


Q ss_pred             ccccccceeEEEecCCcccceee-eee-cc--------ccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCc----
Q 015290          188 LEWTENMATKIANVGNSVHARCQ-KVY-PH--------AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----  251 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~-~~~-~~--------~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~----  251 (409)
                      +. ..++.+.+|++........+ ... ..        .+...+.+++|+|+|++++++  .++.|.+|++.....    
T Consensus       115 ~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~  193 (361)
T 3scy_A          115 AN-YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK  193 (361)
T ss_dssp             EE-TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             EE-CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence            22 13678999998753221111 111 01        122345789999999977665  689999999873331    


Q ss_pred             e-eeee-ecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          252 C-FNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       252 ~-~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      . +... ..... ...+...+..++|+|+| +++++++ .++.|.+||+.+++...  ...+..          ...+..
T Consensus       194 ~~l~~~~~~~~~-~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~  259 (361)
T 3scy_A          194 EKFLTKGTPEAF-KVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQ  259 (361)
T ss_dssp             CCCEEEEEEEEE-ECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCC
T ss_pred             cceeecccccce-ecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCC
Confidence            1 1100 00000 12234557899999999 8776666 68999999998654210  111111          011123


Q ss_pred             ceeeeEeccCCCEEEEee---cCeEEEEEccC-CCc--ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          329 SISDIKFANDGQHLLSRD---YMNLKLWDIRM-DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~---~~~v~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      ....++|+|||++|+++.   ++.|.+|++.. .++  .+..+.. ....               ..++|+|||++|+++
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~~~spdg~~l~~~  323 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNFIITPNGKYLLVA  323 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEEEECTTSCEEEEE
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceEEECCCCCEEEEE
Confidence            457899999999887653   37899999962 133  3333433 2221               589999999988887


Q ss_pred             cc
Q 015290          403 SY  404 (409)
Q Consensus       403 s~  404 (409)
                      +.
T Consensus       324 ~~  325 (361)
T 3scy_A          324 CR  325 (361)
T ss_dssp             ET
T ss_pred             EC
Confidence            73

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=6.1e-17  Score=144.65  Aligned_cols=252  Identities=9%  Similarity=-0.024  Sum_probs=154.0

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcC-CceeeeeeccCCCcccccccccccccCceeccCCCCCc--eeeccc-
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HGYHLE-  189 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-  189 (409)
                      ..+..++|  +|+|++|++++.+ .|.+|++. +++.........            .+.......++++.  +++.+. 
T Consensus        40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~------------~g~~~~~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI------------GGHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC------------CSSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec------------CCCCccEEECCCCCEEEEEEecC
Confidence            36788999  7999999998887 99999997 666543322110            01122244455555  233332 


Q ss_pred             -----cc-----ccceeEEEecCCc-ccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeee
Q 015290          190 -----WT-----ENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       190 -----~~-----~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~  256 (409)
                           ..     .++.+.+|++... .....+..+...+...+.+++|+|+|++++++  .++.|.+|++...++.....
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~  184 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence                 11     4778999999642 21122222211245678999999999988876  57899999997223322111


Q ss_pred             ecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCC--Cccccc--cccccccccccccCCccccccccc---
Q 015290          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA---  328 (409)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---  328 (409)
                      ..   ....|...+..++|+|+| +++++++ .++.|.+|++.  +++...  ..+..+..         .+.+|..   
T Consensus       185 ~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~~~~  251 (365)
T 1jof_A          185 SV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDPETG  251 (365)
T ss_dssp             EE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCTTTS
T ss_pred             eE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCcccccc
Confidence            00   012235668999999999 8877766 47899999875  343210  00111111         0112222   


Q ss_pred             ---ceeeeE-eccCCCEEEEee-c-C-----eEEEEEccCCCcceEE---EecccCcccccccccCCCCccceeeEEEcC
Q 015290          329 ---SISDIK-FANDGQHLLSRD-Y-M-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (409)
Q Consensus       329 ---~i~~~~-~s~~g~~l~sg~-~-~-----~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  394 (409)
                         .+..++ |+|||++|++++ . +     .|.+|++...++....   ...+....               ..++|+|
T Consensus       252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~sp  316 (365)
T 1jof_A          252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAVSP  316 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCEEE
T ss_pred             cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccceecC
Confidence               578899 999999988764 2 4     8999999633554332   22222222               4799999


Q ss_pred             ---CCCeEEEcccC-CCC
Q 015290          395 ---DGLHFATGSYR-RDN  408 (409)
Q Consensus       395 ---dg~~l~s~s~d-g~i  408 (409)
                         ||++|++++.+ ++|
T Consensus       317 ~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          317 CPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             CTTCTTEEEEECSSSCEE
T ss_pred             CCcCCCEEEEEEcCCCeE
Confidence               89999988765 543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=6e-18  Score=149.25  Aligned_cols=248  Identities=10%  Similarity=0.073  Sum_probs=165.4

Q ss_pred             cEEEEEECCCCCEEE-EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCCccccccccce
Q 015290           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLE  111 (409)
Q Consensus        34 ~v~~v~~~~~~~~la-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~  111 (409)
                      .+..++|+|+|++++ ++..++.|.+||+.+++.                           +..+. ++..        .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~~--------~   79 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---------------------------LGRIDLSTPE--------E   79 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECCBTT--------E
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe---------------------------EeeEEcCCcc--------c
Confidence            478899999998664 555678999999987663                           22222 1100        0


Q ss_pred             eccceEEEEEEecCCCCEEEEEe------------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCC
Q 015290          112 IEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (409)
                      +...+.+++|  +|+|+++++++            .++.|.+||+.+++........              .......++
T Consensus        80 ~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~s  143 (337)
T 1pby_B           80 RVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--------------RQITMLAWA  143 (337)
T ss_dssp             EEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--------------SSCCCEEEC
T ss_pred             ccccccceEE--CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--------------CCcceeEEC
Confidence            0135678999  79999998886            6799999999988765544321              112222344


Q ss_pred             CCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC------------------
Q 015290          180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL------------------  239 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~------------------  239 (409)
                      +++..++.+    ++.+.+||+.+.   +....+ ..+.. ...+.|+|+++.++.+  .++                  
T Consensus       144 ~dg~~l~~~----~~~i~~~d~~~~---~~~~~~-~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          144 RDGSKLYGL----GRDLHVMDPEAG---TLVEDK-PIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             TTSSCEEEE----SSSEEEEETTTT---EEEEEE-CSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             CCCCEEEEe----CCeEEEEECCCC---cEeeee-ecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            455544444    468999999763   333333 22210 1123789998877654  333                  


Q ss_pred             -----eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc
Q 015290          240 -----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (409)
Q Consensus       240 -----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  314 (409)
                           .|.+||+. .++.. .+.     +..+...+.+++|+|++ ++++++  ++.|.+||+.+++..    ..+..  
T Consensus       215 ~~~~~~v~~~d~~-~~~~~-~~~-----~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~----~~~~~--  278 (337)
T 1pby_B          215 TAYRTGLLTMDLE-TGEMA-MRE-----VRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASI----KRVPL--  278 (337)
T ss_dssp             GGEEEEEEEEETT-TCCEE-EEE-----EEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEE----EEEEC--
T ss_pred             cccccceEEEeCC-CCCce-Eee-----cCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCc----ceecC--
Confidence                 46889988 44443 221     34455678899999999 888877  789999999886541    22222  


Q ss_pred             cccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccC
Q 015290          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                                  ...+.+++|+|+|++|++++. +.|++||+.+ ++.+..+..+..
T Consensus       279 ------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~-~~~~~~~~~~~~  322 (337)
T 1pby_B          279 ------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAET-LEKKGQVDLPGN  322 (337)
T ss_dssp             ------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTT-CCEEEEEECGGG
T ss_pred             ------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcC-CcEEEEEEcCCC
Confidence                        235788999999998888764 9999999986 788888876544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=6.6e-18  Score=164.43  Aligned_cols=259  Identities=12%  Similarity=0.142  Sum_probs=166.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccC-----CcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-----GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .+...+.+++|+|||++||++ .++.|.+|++.+     ++.                           ......+...+
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~---------------------------~~~~~~~~~~~  169 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA---------------------------IAVTIDGTETL  169 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC---------------------------EESCSCCBTTE
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc---------------------------EEeccCCCCCe
Confidence            356678889999999999985 689999999987     542                           11111111000


Q ss_pred             c---ccccceeccceEEEEEEecCCCCEEEEEe---------------------------------CCCeEEEEEcCCce
Q 015290          105 D---YLKSLEIEEKINRVRWCAAPNGSMFILST---------------------------------NDKTIKLWKVRDQK  148 (409)
Q Consensus       105 ~---~~~~~~~~~~v~~l~~~~s~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~  148 (409)
                      .   .+.. +....+.++.|  +|||++|++++                                 .+..|.+||+.+++
T Consensus       170 ~~g~~~~~-ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~  246 (706)
T 2z3z_A          170 VYGQAVHQ-REFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK  246 (706)
T ss_dssp             EESSCCGG-GCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred             Ecccchhh-hhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence            0   0000 00034688999  89999999987                                 45789999999887


Q ss_pred             eeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc---ccceeEEEecCCcccceeeeeecccccc---cee
Q 015290          149 VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---ENMATKIANVGNSVHARCQKVYPHAHDF---NIN  222 (409)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~v~  222 (409)
                      ........           .....+..+.+++++..++.+...   ....+.+||+.+......+..  ..+..   .+.
T Consensus       247 ~~~~~~~~-----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--~~~~~~~~~~~  313 (706)
T 2z3z_A          247 TVYLQTGE-----------PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV--ETDKHYVEPLH  313 (706)
T ss_dssp             EEECCCCS-----------CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE--EECSSCCCCCS
T ss_pred             eEeeccCC-----------CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE--ccCCCeECccC
Confidence            65432110           112234556677777766665431   224899999987422121111  11221   246


Q ss_pred             EEEeCC--CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE-EEEeCCCCCEEEEE-eCCC----eEE
Q 015290          223 SISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAYS-SSRG----FVR  293 (409)
Q Consensus       223 ~l~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~-s~dg----~i~  293 (409)
                      .++|+|  +|++++++ .++.+.||++...+.....       +..+...+.. ++|+|++ +.|+.+ +.++    .|.
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-------l~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-------VTKGEWEVTNFAGFDPKG-TRLYFESTEASPLERHFY  385 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-------CCCSSSCEEEEEEECTTS-SEEEEEESSSCTTCBEEE
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-------cCCCCeEEEeeeEEcCCC-CEEEEEecCCCCceEEEE
Confidence            789999  99999888 8999999988744554544       4556666776 7999999 666554 4444    677


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ec----CeEEEEEccCCCc
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY----MNLKLWDIRMDST  360 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~----~~v~iwd~~~~~~  360 (409)
                      .||+.+++.     ..+..              ...+..++|+|||++|+.. ++    +.|++||+.. ++
T Consensus       386 ~~d~~~~~~-----~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~-~~  437 (706)
T 2z3z_A          386 CIDIKGGKT-----KDLTP--------------ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK-GS  437 (706)
T ss_dssp             EEETTCCCC-----EESCC--------------SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS-CE
T ss_pred             EEEcCCCCc-----eeccC--------------CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC-Ce
Confidence            777766542     22222              3468899999999988865 32    5699999975 44

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=4.7e-16  Score=133.94  Aligned_cols=255  Identities=12%  Similarity=0.156  Sum_probs=172.6

Q ss_pred             cccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (409)
Q Consensus        10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (409)
                      ....|.+...|+.+  ....++-..+.+++++++|+++++...++.|.+||.....                        
T Consensus         9 ~~~~~~~~~~~g~~--g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~------------------------   62 (286)
T 1q7f_A            9 KRQRMIYHCKFGEF--GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF------------------------   62 (286)
T ss_dssp             CCEEECEEEEECCB--SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE------------------------
T ss_pred             ccceeEEEEeccCC--CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE------------------------
Confidence            33456676677664  3334567789999999999988888889999999976432                        


Q ss_pred             ceeeeeeec------CCCccccccccceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCcccc
Q 015290           90 EYRYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVS  162 (409)
Q Consensus        90 ~~~~~~~~~------~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~  162 (409)
                          +..+.      +|.            ..+..+++. .+++.++++... ++.|.+||. +++......        
T Consensus        63 ----~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~--------  116 (286)
T 1q7f_A           63 ----KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG--------  116 (286)
T ss_dssp             ----EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEEC--------
T ss_pred             ----EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEec--------
Confidence                12221      222            468889983 256655555533 789999994 443322111        


Q ss_pred             cccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeE
Q 015290          163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI  241 (409)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i  241 (409)
                                                                          ..+...+..++++|+++.+++. .++.|
T Consensus       117 ----------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i  144 (286)
T 1q7f_A          117 ----------------------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRV  144 (286)
T ss_dssp             ----------------------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred             ----------------------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEE
Confidence                                                                1233457889999999988887 78999


Q ss_pred             EEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcc
Q 015290          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (409)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  321 (409)
                      .+||..  +..+..+.     ...+...+..++++|+| +++++.+.++.|++||......     ..+..         
T Consensus       145 ~~~~~~--g~~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~-----~~~~~---------  202 (286)
T 1q7f_A          145 IIFDQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQYL-----RQIGG---------  202 (286)
T ss_dssp             EEECTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCEE-----EEESC---------
T ss_pred             EEEcCC--CCEEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCEE-----EEEcc---------
Confidence            999975  44444421     12344568999999999 8888888899999999754321     22222         


Q ss_pred             cccccccceeeeEeccCCCEEEEeec-C-eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290          322 FFTEIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (409)
Q Consensus       322 ~~~~~~~~i~~~~~s~~g~~l~sg~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  399 (409)
                        .++...+..++++++|+++++... + .|.+||..  ++.+..+..+....             .+.+++++|+|+++
T Consensus       203 --~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~~~~g~l~  265 (286)
T 1q7f_A          203 --EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVALMDDGSVV  265 (286)
T ss_dssp             --TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEEETTTEEE
T ss_pred             --CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEECCCCcEE
Confidence              011245788999999998887754 5 99999964  67777776554321             01589999999877


Q ss_pred             EEcccCCCC
Q 015290          400 ATGSYRRDN  408 (409)
Q Consensus       400 ~s~s~dg~i  408 (409)
                      ++ +.|++|
T Consensus       266 vs-~~~~~v  273 (286)
T 1q7f_A          266 LA-SKDYRL  273 (286)
T ss_dssp             EE-ETTTEE
T ss_pred             EE-CCCCeE
Confidence            77 456654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=5e-18  Score=161.44  Aligned_cols=229  Identities=11%  Similarity=0.036  Sum_probs=151.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc-c
Q 015290          114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-T  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  191 (409)
                      .+|.+++|  +|||+.|++++. |++++||++.+++...+....             ........++++ .+++.... .
T Consensus        22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~-------------~~~~~~~~~spd-~~l~~~~~~~   85 (582)
T 3o4h_A           22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREP-------------INSVLDPHYGVG-RVILVRDVSK   85 (582)
T ss_dssp             SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEECCSSC-------------CSEECEECTTCS-EEEEEEECST
T ss_pred             cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEeeeccc-------------ccccccccCCCC-eEEEEeccCC
Confidence            57999999  789999999876 999999999777665543211             112344556666 55554443 2


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe--EEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                      .+...++|.+.....+...+ + ... ..+...+|+|+++.  ++++.++.+.+||+. ++......        .+.. 
T Consensus        86 g~~~~~l~~~~~~~~g~~~~-l-~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~--------~~~~-  152 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEEQR-L-EAV-KPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA--------RLPG-  152 (582)
T ss_dssp             TSCCEEEEEEETTSTTCCEE-C-TTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE--------EESS-
T ss_pred             CCcceEEEEEeccCCCcccc-c-cCC-CCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee--------cCCC-
Confidence            24455666554311111112 1 111 22345678888754  334455555699998 55544431        1222 


Q ss_pred             eEEEEEeCCCCCEEEEEeCC----CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          270 ITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                       .+++|+||| ++|++++.+    +.|++||+.+++.     ..+..             |...+..++|||||++|+++
T Consensus       153 -~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~-------------~~~~~~~~~~SpDG~~l~~~  212 (582)
T 3o4h_A          153 -FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDS-------------GEGSFSSASISPGMKVTAGL  212 (582)
T ss_dssp             -CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECC-------------SSCEEEEEEECTTSCEEEEE
T ss_pred             -ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeec-------------CCCccccceECCCCCEEEEc
Confidence             789999999 999988776    7899999988763     22222             24678999999999999966


Q ss_pred             ec-C--eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEE--------EcCCCCeEEEcccCCCC
Q 015290          346 DY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--------VSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~spdg~~l~s~s~dg~i  408 (409)
                      +. +  .|++||+.+ ++.. .+.++...+               ..++        |+|||.++++++.||++
T Consensus       213 ~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~---------------~~~~~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          213 ETAREARLVTVDPRD-GSVE-DLELPSKDF---------------SSYRPTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             ECSSCEEEEEECTTT-CCEE-ECCCSCSHH---------------HHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             cCCCeeEEEEEcCCC-CcEE-EccCCCcCh---------------hhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence            54 6  899999985 5555 555555443               2455        99999888999988864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=9.1e-17  Score=142.70  Aligned_cols=235  Identities=8%  Similarity=-0.020  Sum_probs=159.5

Q ss_pred             cceEEEEEEecCCCCEEEEEeC-------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          114 EKINRVRWCAAPNGSMFILSTN-------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                      ..+..++|  +|+++++++++.       ++.|.+||..+++.........              .......++++..++
T Consensus        41 ~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--------------~~~~~~~s~dg~~l~  104 (353)
T 3vgz_A           41 KGAYEMAY--SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--------------KPFGATINNTTQTLW  104 (353)
T ss_dssp             SSEEEEEE--ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--------------CCCSEEEETTTTEEE
T ss_pred             cCccceEE--CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--------------CcceEEECCCCCEEE
Confidence            67889999  789998888764       5689999999887766544221              112222333333332


Q ss_pred             cccccccceeEEEecCCcccceeeeeecccccc--------ceeEEEeCCCCCeEEEe---cCCeEEEEEccCCCceeee
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDF--------NINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNI  255 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~v~~l~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~  255 (409)
                      .... .++.+.+||.++..   .+..+......        .+.+++|+|++++++++   .++.|.+||.. .++....
T Consensus       105 v~~~-~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~  179 (353)
T 3vgz_A          105 FGNT-VNSAVTAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTA  179 (353)
T ss_dssp             EEET-TTTEEEEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEE
T ss_pred             EEec-CCCEEEEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEE
Confidence            2221 25689999997643   33332111111        26889999999987765   37889999998 6666655


Q ss_pred             eecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                      +       ..+...+..++|+|++ +++++++.++.|.+||..+++..    ..+....         .++...+..++|
T Consensus       180 ~-------~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~---------~~~~~~~~~~~~  238 (353)
T 3vgz_A          180 I-------QNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD---------DGKEHFFINISL  238 (353)
T ss_dssp             E-------CCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC---------SSSCCCEEEEEE
T ss_pred             e-------cCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC---------CCCCcccceEEE
Confidence            3       3334457889999999 88998999999999999887642    2222100         112346788999


Q ss_pred             ccCCCEEEEee-c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc-cCCCC
Q 015290          336 ANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YRRDN  408 (409)
Q Consensus       336 s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s-~dg~i  408 (409)
                      +|+|+++++++ + +.|.+||+.+ ++.+..+.....                 ..++|+|||++|+.++ .++.|
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v  296 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKV  296 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeE
Confidence            99999887664 4 9999999986 777777765443                 2799999999665544 55543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=2.4e-16  Score=139.77  Aligned_cols=223  Identities=7%  Similarity=0.080  Sum_probs=139.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +...+..++|+|||++|++++ .++.|.+|++.....                        .+.+..+......  +. .
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~------------------------~~~~~~~~~~~~~--p~-~  136 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA------------------------LTLTDTVQHSGHG--PR-P  136 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC------------------------EEEEEEEECCCCC--SS-T
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC------------------------eeecceeecCCCC--CC-c
Confidence            566788999999999998888 779999999963221                        0112222111000  00 0


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcC-CceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ......+.+++|  +|+|+++++...++.|.+|++. +++......                                  
T Consensus       137 ~~~~~~~~~~~~--spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~----------------------------------  180 (347)
T 3hfq_A          137 EQDGSHIHYTDL--TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV----------------------------------  180 (347)
T ss_dssp             TCSSCCEEEEEE--CTTSCEEEEETTTTEEEEEEECTTSCEEEEEE----------------------------------
T ss_pred             cccCCCceEEEE--CCCCcEEEEeCCCCEEEEEEECCCCcEEEeee----------------------------------
Confidence            000145889999  7999966666778899999998 443322110                                  


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccC-CCce--eeeeecCCCcC
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEI-SDQC--FNIVDMKPSNM  263 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~-~~~~--~~~~~~~~~~~  263 (409)
                                              +.......+..++|+|+|+++++ + .++.|.+|++.. .+..  ...+...+...
T Consensus       181 ------------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  236 (347)
T 3hfq_A          181 ------------------------LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY  236 (347)
T ss_dssp             ------------------------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred             ------------------------EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence                                    00112234678999999997666 4 789999999883 1322  11211111001


Q ss_pred             cCccCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          264 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      . ....+..++|+|+| ++| ++...++.|.+||+.....    ......          +..+...+..++|+|||++|
T Consensus       237 ~-~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~----~~~~~~----------~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          237 T-AHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGH----LTLIQQ----------ISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             C-SCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGC----EEEEEE----------EECSSSCCCEEEECTTSSEE
T ss_pred             C-CCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCc----EEEeEE----------EecCCCCcCeEEECCCCCEE
Confidence            1 12458899999999 766 5666789999999874211    111111          11123457899999999998


Q ss_pred             EEee-c-CeEEEEEcc
Q 015290          343 LSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       343 ~sg~-~-~~v~iwd~~  356 (409)
                      ++++ + +.|.+|+++
T Consensus       301 ~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          301 VVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEEcCCCcEEEEEEe
Confidence            8875 4 999999654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=2.9e-17  Score=148.33  Aligned_cols=291  Identities=11%  Similarity=0.030  Sum_probs=169.3

Q ss_pred             cEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           34 IVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .+.+++|+|||++||.....   ..|.+||+.+++.                            ..+..+..        
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~----------------------------~~l~~~~~--------   80 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA----------------------------VQLTEGKG--------   80 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE----------------------------EECCCSSC--------
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE----------------------------EEeecCCC--------
Confidence            36788999999998877543   3688888877652                            12222220        


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCc--ccccccccccccC----ceeccCCCCCce
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP--FVSSENTLLAEKN----FMNEHNPPSFAH  184 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~  184 (409)
                         .....+.|  +|||+.|+.++.++.|.+||+.+++...+.......  .-..+.+......    .....+++++..
T Consensus        81 ---~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~  155 (396)
T 3c5m_A           81 ---DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW  155 (396)
T ss_dssp             ---BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             ---CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence               12233778  899999999999999999999988765554322110  0000000000000    000233444444


Q ss_pred             eecccc---cccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cC------CeEEEEEccCCCcee
Q 015290          185 GYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEISDQCF  253 (409)
Q Consensus       185 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d------~~i~lwd~~~~~~~~  253 (409)
                      ++....   ..+..+.+||+.+..   ....  ..+...+..+.|+| +++.|+.. .+      ..|.+||+. .+...
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~---~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~  229 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIETGE---LEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSNVR  229 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETTTCC---EEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCCCE
T ss_pred             eeeeeeccCCCcceEEEEECCCCc---EEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCcee
Confidence            443321   235588999987632   2222  24566788999999 78777664 32      468888886 33322


Q ss_pred             eeeecCCCcCcCc-cCceEEEEEeCCCCCEEEEEeCC-----CeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          254 NIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       254 ~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                      ..       .... ...+..++|+|+| +.|+.++.+     +.|.+||+.+++.     ..+..              .
T Consensus       230 ~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~--------------~  282 (396)
T 3c5m_A          230 KI-------KEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLEN-----EEVMV--------------M  282 (396)
T ss_dssp             ES-------SCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCE-----EEEEE--------------C
T ss_pred             Ee-------eccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCe-----EEeee--------------C
Confidence            22       1211 2357889999999 776666543     4599999987653     11111              0


Q ss_pred             cceeeeEecc-CCCEEEEee-----------------cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceee
Q 015290          328 ASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (409)
Q Consensus       328 ~~i~~~~~s~-~g~~l~sg~-----------------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (409)
                      .... +.|+| ||+++++++                 +..|++||+.. ++. ..+..+......    +..++...+..
T Consensus       283 ~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~~~~~~~~~~~  355 (396)
T 3c5m_A          283 PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----LDGDRQITHPH  355 (396)
T ss_dssp             CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----BTTBSSTTCCC
T ss_pred             CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----ccccccCCCCC
Confidence            0122 88999 999888642                 27899999975 443 344444331000    00000001147


Q ss_pred             EEEcCCCCeEEEcccC
Q 015290          390 CSVSGDGLHFATGSYR  405 (409)
Q Consensus       390 ~~~spdg~~l~s~s~d  405 (409)
                      ++|+|||+.|+.++.+
T Consensus       356 ~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          356 PSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             CEECTTSSEEEEEECT
T ss_pred             ceEccCCCeEEEEecC
Confidence            8999999998877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=4.2e-17  Score=159.10  Aligned_cols=243  Identities=9%  Similarity=0.045  Sum_probs=151.3

Q ss_pred             EEEEEECCCCCEEEEEec---------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           35 VSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      |.+++|||||++||+++.         ++.|++||+.+++..                         ....+   .    
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-------------------------~~~~l---~----  109 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-------------------------RGNEL---P----  109 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-------------------------CSSCC---C----
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-------------------------cceec---C----
Confidence            889999999999999876         789999999887620                         00011   1    


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              ..+..++|  ||||+.|+++. |+.|++|++.+++...+......                           
T Consensus       110 --------~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~---------------------------  151 (719)
T 1z68_A          110 --------RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE---------------------------  151 (719)
T ss_dssp             --------SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT---------------------------
T ss_pred             --------cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc---------------------------
Confidence                    46788999  89999999886 78999999988765443210000                           


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccc---------cceeEEEeCCCCCeEEEe-cCC----------------
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHD---------FNINSISNNSDCETFVSA-DDL----------------  239 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~~~-~d~----------------  239 (409)
                                              ...+ .++.         ....+++|+|||++|+++ .|.                
T Consensus       152 ------------------------~~v~-~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~  206 (719)
T 1z68_A          152 ------------------------NKIF-NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY  206 (719)
T ss_dssp             ------------------------TTEE-ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred             ------------------------CCeE-cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence                                    0000 1221         223579999999999987 442                


Q ss_pred             ------------------eEEEEEccCCCceeeeeecC-CCcCcCccCceEEEEEeCCCCCEEEEEeCC----CeEEEEe
Q 015290          240 ------------------RINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVD  296 (409)
Q Consensus       240 ------------------~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d----g~i~iwd  296 (409)
                                        .|++||+. .+.....+.+. +..+.+|...+.+++|+||+ +++++....    ..|.+||
T Consensus       207 ~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          207 PRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEE
T ss_pred             ccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEc
Confidence                              78889988 44432000111 01134677889999999998 877774432    2488899


Q ss_pred             ----CCCccccccccccccccccccCCccccccccccee-----eeEeccCCCEEEE--ee-c--CeEEEEEccCCCcce
Q 015290          297 ----MRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLLS--RD-Y--MNLKLWDIRMDSTPV  362 (409)
Q Consensus       297 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~g~~l~s--g~-~--~~v~iwd~~~~~~~~  362 (409)
                          ..+++.    ..++..         ...+|...+.     .+.|+|||+.|+.  .. +  ..|.+||+.. ++ .
T Consensus       285 ~~~~~~~g~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-~~-~  349 (719)
T 1z68_A          285 FREDWQTWDC----PKTQEH---------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-EN-A  349 (719)
T ss_dssp             ECSSSSSEEC----CGGGEE---------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-TT-C
T ss_pred             ccCCCCCCce----EEEEec---------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-Cc-e
Confidence                766653    122210         0011234455     7899999996654  32 2  4677888763 33 4


Q ss_pred             EEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ..+..+...+               ..+.++ +++.|+..+.+
T Consensus       350 ~~lt~~~~~v---------------~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          350 IQITSGKWEA---------------INIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             EECSCSSSCE---------------EEEEEE-CSSEEEEEESC
T ss_pred             EecccCceEE---------------EEEEEE-eCCEEEEEEec
Confidence            4444333222               355666 77766655543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=4.3e-16  Score=139.13  Aligned_cols=258  Identities=7%  Similarity=-0.032  Sum_probs=157.0

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEecc-CCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ..+..++|+|||++|++++.+ .|.+|++. +++..                         .+.....+           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~-----------   82 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG-----------   82 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence            467889999999999999887 99999987 55420                         01111111           


Q ss_pred             eccceEEEEEEecCCCCE--EEEEe-------------CCCeEEEEEcC-CceeeeeeccCCCcccccccccccccCcee
Q 015290          112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (409)
                        +.+..++|  +|+|++  ++++.             .++++.+|++. .++.........         .........
T Consensus        83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---------~~~~~~~~~  149 (365)
T 1jof_A           83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---------YQENTGIHG  149 (365)
T ss_dssp             --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---------CCTTCCEEE
T ss_pred             --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---------eCCCCcceE
Confidence              12345778  799984  44543             68999999997 354432211000         001123344


Q ss_pred             ccCCCCCceeecccccccceeEEEecC-Ccccceeeeeec-cccccceeEEEeCCCCCeEEEe--cCCeEEEEEccC-CC
Q 015290          176 EHNPPSFAHGYHLEWTENMATKIANVG-NSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SD  250 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~-~~  250 (409)
                      ..+++++.+++.... .++.|++|+++ +... ..+..+. ..+...+..++|+|+|++++++  .++.|.+|++.. .+
T Consensus       150 ~~~spdG~~l~~~~~-~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          150 MVFDPTETYLYSADL-TANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEECCCCCEEEEEcC-CCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            455666666654432 24689999997 3221 1122220 1235668999999999998876  578999998762 23


Q ss_pred             cee---eeeecCCCcCcCccC------ceEEEE-EeCCCCCEEEEEeCC-C-----eEEEEeCC-Ccccccccccccccc
Q 015290          251 QCF---NIVDMKPSNMDDLTE------VITSAE-FHPIYCNLLAYSSSR-G-----FVRLVDMR-QSALCDHSARILRDA  313 (409)
Q Consensus       251 ~~~---~~~~~~~~~~~~~~~------~v~~~~-~~p~~~~~l~s~s~d-g-----~i~iwd~~-~~~~~~~~~~~~~~~  313 (409)
                      ...   ..+..-+..+.+|..      .+..++ |+|+| ++|++++.+ +     .|.+|++. ++++.. ....... 
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~-~~~~~~~-  304 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEK-QLFLSPT-  304 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEE-EEEEEEC-
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEE-eeeeeec-
Confidence            321   122111111223333      588999 99999 877766543 2     89999986 443210 0001111 


Q ss_pred             ccccCCcccccccccceeeeEecc---CCCEEEEee-c-CeEEEEEccC
Q 015290          314 AESHGSKSFFTEIIASISDIKFAN---DGQHLLSRD-Y-MNLKLWDIRM  357 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~sg~-~-~~v~iwd~~~  357 (409)
                                  +......++|+|   ||++|++++ + +.|++|++..
T Consensus       305 ------------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          305 ------------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             ------------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ------------CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence                        123467789999   899999885 4 8999999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=3.8e-16  Score=138.39  Aligned_cols=79  Identities=15%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             CceEEEEEeC-CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          268 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       268 ~~v~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ..+.+++|+| ++ ++++++  ++.|.+||+.+++..    ..+..              ...+.+++|+|+|++|++++
T Consensus       255 ~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          255 ELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLI----KAANL--------------DHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             SCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEE----EEEEC--------------SSCCCEEEECSSSSCEEEES
T ss_pred             CcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEE----EEEcC--------------CCCccceEECCCCCEEEEec
Confidence            3567888999 98 888877  889999999887541    22222              23467899999999888775


Q ss_pred             c-CeEEEEEccCCCcceEEEecc
Q 015290          347 Y-MNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       347 ~-~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      . +.|++||+.+ ++.+..++..
T Consensus       314 ~~~~v~v~d~~~-~~~~~~~~~~  335 (349)
T 1jmx_B          314 TFNDLAVFNPDT-LEKVKNIKLP  335 (349)
T ss_dssp             BSSEEEEEETTT-TEEEEEEECS
T ss_pred             CCCeEEEEeccc-cceeeeeecC
Confidence            4 9999999986 7778777655

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=2.3e-15  Score=132.29  Aligned_cols=252  Identities=10%  Similarity=0.075  Sum_probs=163.7

Q ss_pred             CCcEEEEEECCCCCEEEEEecC------------------------CeEEEEeccCCcCCCCccchhhhhhhcccccccC
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (409)
                      -+.+.+|+++|+|+++++...+                        +.|.+||..+++.                     
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------   81 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------   81 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence            3579999999999999888777                        3678888766552                     


Q ss_pred             CCceeeeeeec-CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce-eeeeeccCCCccccccc
Q 015290           88 HPEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSEN  165 (409)
Q Consensus        88 ~~~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~  165 (409)
                            +..+. ++-            ..+..|++  +++|+++++...++.|++|+..... ...........      
T Consensus        82 ------~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------  135 (329)
T 3fvz_A           82 ------LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------  135 (329)
T ss_dssp             ------EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC------
T ss_pred             ------EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC------
Confidence                  22222 222            47889999  7899988888889999999986542 11111000000      


Q ss_pred             ccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe--cCCeEE
Q 015290          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRIN  242 (409)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~d~~i~  242 (409)
                                                               +     .-.++...+..++++| ++..+++.  .++.|+
T Consensus       136 -----------------------------------------g-----~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A          136 -----------------------------------------G-----SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             -----------------------------------------C-----CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             -----------------------------------------C-----CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence                                                     0     0023344678999999 78777776  489999


Q ss_pred             EEEccCCCceeeeeecCCCc---CcCccCceEEEEEeCC-CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC
Q 015290          243 LWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (409)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  318 (409)
                      +|+..  +..+..+......   ..++-.....++++|+ + .++++...++.|++||..+++.    +..+..      
T Consensus       170 ~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~----~~~~~~------  236 (329)
T 3fvz_A          170 QFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEF----VREIKH------  236 (329)
T ss_dssp             EECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCE----EEEECC------
T ss_pred             EEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcE----EEEEec------
Confidence            99954  5555543211000   0123345899999998 6 8888888899999999986653    222222      


Q ss_pred             CcccccccccceeeeEeccCCCEEEE-------eec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeE
Q 015290          319 SKSFFTEIIASISDIKFANDGQHLLS-------RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  390 (409)
Q Consensus       319 ~~~~~~~~~~~i~~~~~s~~g~~l~s-------g~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  390 (409)
                           ..+...+..++|+| +..+++       ... ..|++||+.+ ++.+..+......            ...+..+
T Consensus       237 -----~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------~~~p~~i  297 (329)
T 3fvz_A          237 -----ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------FDMPHDI  297 (329)
T ss_dssp             -----TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------CSSEEEE
T ss_pred             -----cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------cCCeeEE
Confidence                 11234677888998 433332       222 5899999986 7888777421111            0112689


Q ss_pred             EEcCCCCeEEEcccCCCC
Q 015290          391 SVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       391 ~~spdg~~l~s~s~dg~i  408 (409)
                      +++|||.++++...++.|
T Consensus       298 a~~~dG~lyvad~~~~~I  315 (329)
T 3fvz_A          298 VASEDGTVYIGDAHTNTV  315 (329)
T ss_dssp             EECTTSEEEEEESSSCCE
T ss_pred             EECCCCCEEEEECCCCEE
Confidence            999999888888777765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=3e-15  Score=129.60  Aligned_cols=231  Identities=8%  Similarity=-0.003  Sum_probs=161.0

Q ss_pred             CCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +.....+++|+|+|+ +++++..++.|..|+..++ .                            ..+..+.        
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~--------   68 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS--------   68 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence            456778999999998 7788888999999998765 2                            2334444        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..+.++++  +++|+++++...++.|.+||..+++.......                                  
T Consensus        69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~----------------------------------  108 (296)
T 3e5z_A           69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADS----------------------------------  108 (296)
T ss_dssp             ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECE----------------------------------
T ss_pred             ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeec----------------------------------
Confidence                67899999  78998877777778999999977765433110                                  


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE----e-c-------------CCeEEEEEccCCCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ  251 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~----~-~-------------d~~i~lwd~~~~~~  251 (409)
                                             ........+..++++|+|+++++    | .             .+.|..++..  +.
T Consensus       109 -----------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~  163 (296)
T 3e5z_A          109 -----------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT  163 (296)
T ss_dssp             -----------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred             -----------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence                                   00111234567899999998887    3 1             2344444433  33


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC-Cccc-cccccccccccccccCCcccccccccc
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      . ..       +..+......++|+|++ +.+++.+.++.|.+||+. .++. ..  ...+..             +...
T Consensus       164 ~-~~-------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~-------------~~~~  219 (296)
T 3e5z_A          164 L-SA-------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTV-------------EPGK  219 (296)
T ss_dssp             E-EE-------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECC-------------SSSC
T ss_pred             E-EE-------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeC-------------CCCC
Confidence            2 22       23344567899999999 877777888999999987 3332 00  111211             1245


Q ss_pred             eeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE-cCCCCeEEEcccCC
Q 015290          330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYRR  406 (409)
Q Consensus       330 i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~s~s~dg  406 (409)
                      +..++++++|+++++. ++.|.+||..  ++.+..+..+.. +               .+++| +|+++.|++++.++
T Consensus       220 p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             CCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETTE
T ss_pred             CCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCCe
Confidence            6789999999977776 7899999985  778888876665 3               58999 68999888887765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=1.6e-15  Score=146.53  Aligned_cols=250  Identities=10%  Similarity=0.051  Sum_probs=155.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEE--ecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .|...|..++|++++-++++.  +.++...||....+..                           ...+..|.      
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------   67 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------   67 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence            378899999999887777777  5688999999643321                           23344444      


Q ss_pred             ccceeccceE---------EEEEEecCCCCE-EEEEeC-CCeEEEEEcC--C-ceeeeeeccCCCcccccccccccccCc
Q 015290          108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNF  173 (409)
Q Consensus       108 ~~~~~~~~v~---------~l~~~~s~~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (409)
                            ..+.         ...|..||||+. |+.++. +..|.++++.  + +....+....                 
T Consensus        68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~-----------------  124 (662)
T 3azo_A           68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS-----------------  124 (662)
T ss_dssp             ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------------
T ss_pred             ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------------
Confidence                  2333         455632489998 776654 4556666654  2 3322211000                 


Q ss_pred             eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC----------CeEE
Q 015290          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRIN  242 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----------~~i~  242 (409)
                                                              ...|...+..++|+|||+.|+++ .+          ..|+
T Consensus       125 ----------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A          125 ----------------------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             ----------------------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             ----------------------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence                                                    01155677899999999999987 65          5899


Q ss_pred             EEEccCC-----CceeeeeecCCCcCc-CccCceEEEEEeCCCCCEEEEEeCC--------CeEEEEeCC-Ccccccccc
Q 015290          243 LWNLEIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSA  307 (409)
Q Consensus       243 lwd~~~~-----~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d--------g~i~iwd~~-~~~~~~~~~  307 (409)
                      +||+...     +.. ..       +. .+...+..++|+||| ++|+.++.+        ..|.+||+. ++... . .
T Consensus       165 ~~~~~~~~~~~~~~~-~~-------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~  233 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RE-------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-T  233 (662)
T ss_dssp             EEETTSTTTTCGGGS-EE-------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-E
T ss_pred             EEECCCCccccCCce-eE-------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-c
Confidence            9999821     333 22       33 455678889999999 988877754        379999998 45110 0 1


Q ss_pred             ccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C--eEEEEEccCCCcceEEEecccCcccccccccCCCCc
Q 015290          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI  384 (409)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (409)
                      ..+.            .+|...+..++|+|||+++++++. +  .|.+||+.. ++.......+....       .....
T Consensus       234 ~~l~------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~  293 (662)
T 3azo_A          234 RTLL------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWT  293 (662)
T ss_dssp             EEEE------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCS
T ss_pred             EEeC------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------Ccccc
Confidence            1111            112457889999999997777654 6  677777653 44333222222110       00111


Q ss_pred             cceeeEEEcCCCCeEEEcccCCC
Q 015290          385 FDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       385 ~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      .++..++|+|+++++++++. +.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          294 PGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             TTCCSEEECTTSCEEEEEBS-SS
T ss_pred             ccCceEeEeCCCEEEEEEEc-Cc
Confidence            12357999999999998876 54

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=2.7e-15  Score=146.52  Aligned_cols=74  Identities=9%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             EEEEECCCCCEEEEEecC---------CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           36 SAIEFDKTGDYLAVGDRG---------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..++|||||++||.++.+         +.+.+||+.+++.                            ..+..|.     
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----------------------------~~l~~~~-----  111 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------------------------ITEERIP-----  111 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------------------------CCSSCCC-----
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE----------------------------EEcccCC-----
Confidence            458999999999999876         5667999998763                            2355565     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  152 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  152 (409)
                             +.+...+|  ||||+.|+.+. |+.|++|++.+++...+
T Consensus       112 -------~~~~~~~~--SPdG~~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A          112 -------NNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             -------TTEEEEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             -------CcceeeEE--CCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence                   68999999  89999999885 68999999988765543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=5.2e-14  Score=123.93  Aligned_cols=244  Identities=11%  Similarity=0.100  Sum_probs=155.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +...+.+++|+|+|++++++..++.|.+||..+++.                           ......+.         
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---------------------------~~~~~~~~---------   86 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------KRPFVSHK---------   86 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------EEEEECSS---------
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------EEEeeCCC---------
Confidence            455678999999999888888899999999887652                           11122333         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCC----CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                         ..+.+++|  +++|+++++...+    +.|.+||..++........                               
T Consensus        87 ---~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------------  130 (333)
T 2dg1_A           87 ---ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-------------------------------  130 (333)
T ss_dssp             ---SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------------------
T ss_pred             ---CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------------------
Confidence               67999999  7899877777666    6899999877654322110                               


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c------CCeEEEEEccCCCceeeeeecC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~------d~~i~lwd~~~~~~~~~~~~~~  259 (409)
                                                  ..+...+..++++|+++.+++. .      .+.|..+|.. .+.....    
T Consensus       131 ----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~----  177 (333)
T 2dg1_A          131 ----------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI----  177 (333)
T ss_dssp             ----------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE----
T ss_pred             ----------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe----
Confidence                                        1123467889999999877776 3      2455555544 2232221    


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCC-ccccccccccccccccccCCcccccccccceeeeEecc
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  337 (409)
                          ......+..++|+|++ +.| ++.+.++.|.+||+.. +...    ..+....     ...+.++ ..+..+++++
T Consensus       178 ----~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~-----~~~~~~~-~~~~~i~~d~  242 (333)
T 2dg1_A          178 ----IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATI-----PYYFTGH-EGPDSCCIDS  242 (333)
T ss_dssp             ----EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEE-----EEECCSS-SEEEEEEEBT
T ss_pred             ----ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceE-----EEecCCC-CCCCceEECC
Confidence                1223457899999998 744 5556688999999864 2211    1110000     0000111 3567899999


Q ss_pred             CCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          338 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       338 ~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +|+++++... +.|.+||..  ++.+..+..+.....         ....+.+++|+||++.|+.++.+
T Consensus       243 ~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCc
Confidence            9997777654 899999984  666777654432000         00001589999998777665554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=1.3e-13  Score=122.61  Aligned_cols=263  Identities=11%  Similarity=0.054  Sum_probs=152.6

Q ss_pred             CCCEEEEEe------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        43 ~~~~la~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      +++++++..      .|+.|.+||..+++.                           +..+..+.            .+ 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p-   53 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG-   53 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence            566665543      478999999887663                           33444443            34 


Q ss_pred             EEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                       .++|  +||+++++++.          .+++|.+||..+.+...........       ............++++.+++
T Consensus        54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-------~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-------VQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-------CCBCCCGGGEEECTTSSEEE
T ss_pred             -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-------cccCCCcceEEECCCCCEEE
Confidence             8899  89999999886          3678999999887765544321100       00011233344566777777


Q ss_pred             cccccccceeEEEecCCcccceeeee-eccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCcee----------
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCF----------  253 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~----------  253 (409)
                      .+....++.|.+||+.+.   +.+.. + .. .. ...+.+.|++ ..+++. .||.+.+|++...+...          
T Consensus       124 v~n~~~~~~v~v~d~~~~---~~~~~~i-~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKG---DYVEDVT-AA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             EEEESSSEEEEEEETTTT---EEEEEEG-GG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             EECCCCCCeEEEEECCCC---cEEEEEe-cC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            776544678999999864   33332 1 11 01 1112333433 222333 44444444443112111          


Q ss_pred             --------------------------eeeecCCCc--------CcC----c----cCceEEEEEeCCCCCEEEEEeC---
Q 015290          254 --------------------------NIVDMKPSN--------MDD----L----TEVITSAEFHPIYCNLLAYSSS---  288 (409)
Q Consensus       254 --------------------------~~~~~~~~~--------~~~----~----~~~v~~~~~~p~~~~~l~s~s~---  288 (409)
                                                ..++.....        +..    +    ......++|+|++ ..++.+..   
T Consensus       198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~  276 (361)
T 2oiz_A          198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDG  276 (361)
T ss_dssp             TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSC
T ss_pred             CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCC
Confidence                                      000000000        000    0    0111126889998 55554432   


Q ss_pred             --------CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCC-
Q 015290          289 --------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS-  359 (409)
Q Consensus       289 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~-  359 (409)
                              .+.|.+||+.+++.    +..+..              .. ...++|+|||++|++++.+.|.+||..+ + 
T Consensus       277 ~~~~~~~~~~~v~viD~~t~~~----v~~i~~--------------~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t-~~  336 (361)
T 2oiz_A          277 KEGTHKFPAAEIWVMDTKTKQR----VARIPG--------------RD-ALSMTIDQQRNLMLTLDGGNVNVYDISQ-PE  336 (361)
T ss_dssp             CTTCTTCCCSEEEEEETTTTEE----EEEEEC--------------TT-CCEEEEETTTTEEEEECSSCEEEEECSS-SS
T ss_pred             CcccccCCCceEEEEECCCCcE----EEEEec--------------CC-eeEEEECCCCCEEEEeCCCeEEEEECCC-Cc
Confidence                    34899999988764    233443              13 8899999999999987669999999986 7 


Q ss_pred             -cceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          360 -TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       360 -~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                       +.+..+.......               ..++++|||+
T Consensus       337 l~~~~~i~~~G~~P---------------~~~~~~p~G~  360 (361)
T 2oiz_A          337 PKLLRTIEGAAEAS---------------LQVQFHPVGG  360 (361)
T ss_dssp             CEEEEEETTSCSSE---------------EEEEECCCSC
T ss_pred             ceeeEEeccCCCCc---------------EEEEecCCCC
Confidence             7887874433321               5899999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=8.6e-15  Score=141.40  Aligned_cols=138  Identities=12%  Similarity=0.007  Sum_probs=86.4

Q ss_pred             cccceeEEEeCCCCCeEEEe-cC--------CeEEEEEccCCC---ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          217 HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d--------~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                      +...+..++|+|||++|+.+ .+        ..|++||+...+   .....       ..++...+..+.|+|+| ++++
T Consensus       186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-------~~~~~~~~~~~~~spdg-~l~~  257 (662)
T 3azo_A          186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-------LGGPEEAIAQAEWAPDG-SLIV  257 (662)
T ss_dssp             CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-------EEETTBCEEEEEECTTS-CEEE
T ss_pred             CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-------CCCCCceEcceEECCCC-eEEE
Confidence            34566778999999999876 44        379999998323   33332       23456788999999999 7888


Q ss_pred             EEeCCC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcce
Q 015290          285 YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV  362 (409)
Q Consensus       285 s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~  362 (409)
                      +++.++  .|.+||+.+++..    .+...+. ... .   ..-...+..++|+|+++++++++.+.++||.+...+..+
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~----~l~~~~~-~~~-~---p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  328 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGAAT----QLCRREE-EFA-G---PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL  328 (662)
T ss_dssp             EECTTSSCEEEEECTTTCCEE----ESSCCSS-BSS-C---CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE
T ss_pred             EECCCCCeEEEEEECCCCcee----ecccccc-ccc-C---ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE
Confidence            888888  5666676555421    1111110 000 0   000012567899999999888755778888443323446


Q ss_pred             EEEecccCc
Q 015290          363 ATFKIHEHL  371 (409)
Q Consensus       363 ~~~~~~~~~  371 (409)
                      ..+..+...
T Consensus       329 ~~l~~~~~~  337 (662)
T 3azo_A          329 VDAAGPWTE  337 (662)
T ss_dssp             EECCSSCCE
T ss_pred             EEecCCCCe
Confidence            666665443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=6.6e-14  Score=136.12  Aligned_cols=249  Identities=11%  Similarity=0.081  Sum_probs=146.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCC-----eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      |...+..++|||||++||.++.++     .|++||+.+++.                           ......+     
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~---------------------------~~~~~~~-----  170 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE---------------------------LPDVLER-----  170 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE---------------------------EEEEEEE-----
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---------------------------CcccccC-----
Confidence            344688999999999999876543     899999998763                           1111111     


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                              ..+..++|  +|||+.|+.++.++.       .........                               
T Consensus       171 --------~~~~~~~w--spDg~~l~~~~~~~~-------~~~~~~~~~-------------------------------  202 (710)
T 2xdw_A          171 --------VKFSCMAW--THDGKGMFYNAYPQQ-------DGKSDGTET-------------------------------  202 (710)
T ss_dssp             --------ECSCCEEE--CTTSSEEEEEECCCC-------SSCCSSSCC-------------------------------
T ss_pred             --------cccceEEE--EeCCCEEEEEEECCc-------ccccccccc-------------------------------
Confidence                    23567999  899999999887764       000000000                               


Q ss_pred             ecccccccceeEEEecCCcccc-eeeeeeccccccceeEEEeCCCCCeEEEe-c-----CCeEEEEEccCC-----Cc-e
Q 015290          186 YHLEWTENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEIS-----DQ-C  252 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-----d~~i~lwd~~~~-----~~-~  252 (409)
                         .......|++|++.+.... ..+... ..+...+..+.|+|||++|+.+ .     +..|++||+...     +. .
T Consensus       203 ---~~~~~~~v~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          203 ---STNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             ---CCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ---ccCCCCEEEEEECCCCcccceEEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence               0000113444444332111 111110 2245557789999999999875 4     568999999730     21 2


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC----CeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ...       +..+...+.. .|+|+| ..|+..+..    +.|.+||+.++...  ..+.+..|.           ...
T Consensus       279 ~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~-----------~~~  336 (710)
T 2xdw_A          279 WVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVPEH-----------EKD  336 (710)
T ss_dssp             CEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECCC-----------SSC
T ss_pred             eEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccCCC-----------CCC
Confidence            333       2334444444 488888 666555432    36999998775310  001111100           012


Q ss_pred             ceeeeEeccCCCEEEEee-cC--eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          329 SISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      .+..++|++++.++++.. ++  .|++||+.. ++.+..+..+...+               ..++++|++..|+.
T Consensus       337 ~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~~~~s~d~~~l~~  396 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VGYSGQKKDTEIFY  396 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EEEECCTTCSEEEE
T ss_pred             eEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EEEecCCCCCEEEE
Confidence            577889997777777775 34  577778754 66667776664432               47889999876653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=3.6e-13  Score=114.74  Aligned_cols=229  Identities=8%  Similarity=0.006  Sum_probs=149.3

Q ss_pred             cEEEEEECCCCCEEE-EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        34 ~v~~v~~~~~~~~la-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ...+++++++|++++ +...++.|.+|+..+...                           ......+.           
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~~-----------   66 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------TVLPFNGL-----------   66 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------------------------------EECCCCSC-----------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc---------------------------ceEeeCCc-----------
Confidence            788999999999777 546788999998765432                           00011121           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ..+.++++  ++++.++++.. ++.|.+||..+.......                                       
T Consensus        67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~---------------------------------------  103 (270)
T 1rwi_B           67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVLP---------------------------------------  103 (270)
T ss_dssp             -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEECC---------------------------------------
T ss_pred             -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeeee---------------------------------------
Confidence             36778999  78888665555 889999997655332110                                       


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                            ......+..++++++++.+++. .++.|.+|+.. .......       .......+.
T Consensus       104 ----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~~p~  153 (270)
T 1rwi_B          104 ----------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQTVL-------PFTGLNDPD  153 (270)
T ss_dssp             ----------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSCEEC-------CCCSCCSCC
T ss_pred             ----------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-CceeEee-------ccccCCCce
Confidence                                  1122456889999999877777 78899999765 2222111       112224568


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeE
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  350 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v  350 (409)
                      .++++|+| +++++...++.|.+||.......    .....             +...+..++++++|.++++.. ++.|
T Consensus       154 ~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v  215 (270)
T 1rwi_B          154 GVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQV  215 (270)
T ss_dssp             CEEECTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCS-------------SCCSEEEEEECTTCCEEEEETTTSCE
T ss_pred             eEEEeCCC-CEEEEECCCCEEEEEecCCCceE----eeccc-------------CCCCceEEEECCCCCEEEEECCCCcE
Confidence            89999999 88887777889999998765421    11001             013578899999997666665 4899


Q ss_pred             EEEEccCCCcceEEEec-ccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          351 KLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .+||...  ........ +...               +.+++++|+|+++++...++.|
T Consensus       216 ~~~~~~~--~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          216 VKLLAGS--TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             EEECTTC--SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEE
T ss_pred             EEEcCCC--CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEE
Confidence            9999863  33322211 1111               2589999999988888877765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.61  E-value=4.4e-14  Score=127.15  Aligned_cols=253  Identities=10%  Similarity=0.002  Sum_probs=146.2

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...+..+.|+|||++|+.++.++.|.+||+.+++.                           ...+..+.          
T Consensus        80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~---------------------------~~~~~~~~----------  122 (388)
T 3pe7_A           80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE---------------------------NVVYQVPA----------  122 (388)
T ss_dssp             CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECCT----------
T ss_pred             CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------------eeeeechh----------
Confidence            33444678999999999999999999999998763                           12233333          


Q ss_pred             eccceEEEEEEecCCCCEEEEE----------------------eCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILS----------------------TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                        ..+....|..++++++++..                      ..+..|.+||+.+++...+...              
T Consensus       123 --~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--------------  186 (388)
T 3pe7_A          123 --EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE--------------  186 (388)
T ss_dssp             --TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE--------------
T ss_pred             --hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC--------------
Confidence              34444555437899888743                      2447899999998876554321              


Q ss_pred             ccCceeccCCC-CCceeecccccc----cceeEEEecCCcccceeeeeeccccc--cceeEEEeCCCCCeEEEe--cCC-
Q 015290          170 EKNFMNEHNPP-SFAHGYHLEWTE----NMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCETFVSA--DDL-  239 (409)
Q Consensus       170 ~~~~~~~~~~~-~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~--~d~-  239 (409)
                      ........+++ ++..++......    ...+.+++.....    .+.+ ..+.  ..+..++|+|+|+.|+..  .++ 
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (388)
T 3pe7_A          187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----MRKV-KTHAEGESCTHEFWVPDGSALVYVSYLKGS  261 (388)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----CEES-CCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred             CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----eEEe-eeCCCCcccccceECCCCCEEEEEecCCCC
Confidence            11223334455 555544433311    2367777765422    2222 2232  357788999999988653  322 


Q ss_pred             ---eEEEEEccCCCceeeeeecCCCcCcCccCc---eEEEEEeCCCCCEEEEE---------eCCCeEEEEeCCCccccc
Q 015290          240 ---RINLWNLEISDQCFNIVDMKPSNMDDLTEV---ITSAEFHPIYCNLLAYS---------SSRGFVRLVDMRQSALCD  304 (409)
Q Consensus       240 ---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~s~---------s~dg~i~iwd~~~~~~~~  304 (409)
                         .|++||+. +++......     +.++...   ...+.|+|+| +.|+..         ..+..|.+||+.+++.  
T Consensus       262 ~~~~l~~~d~~-~g~~~~l~~-----~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--  332 (388)
T 3pe7_A          262 PDRFIYSADPE-TLENRQLTS-----MPACSHLMSNYDGSLMVGDG-SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--  332 (388)
T ss_dssp             CCEEEEEECTT-TCCEEEEEE-----ECCEEEEEECTTSSEEEEEE-CCC------------CCCCEEEEEETTTTEE--
T ss_pred             CcceEEEEecC-CCceEEEEc-----CCCceeeeecCCCCeEccCC-CcceeEeeeccccccCCCCEEEEEeccCCce--
Confidence               39999998 554332211     1211000   1123799999 666643         4567899999988753  


Q ss_pred             cccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEcc
Q 015290          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIR  356 (409)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~  356 (409)
                         ..+..+....  .....+....+..++|+|||++|+..++  +...||.+.
T Consensus       333 ---~~l~~~~~~~--~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          333 ---HRVARHDTSW--KVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ---EEEEECCCCC--CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ---EEeccccCcc--cccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence               2222211000  0000011114678899999999887653  655666544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.61  E-value=5e-13  Score=113.86  Aligned_cols=224  Identities=11%  Similarity=0.056  Sum_probs=154.8

Q ss_pred             CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEE
Q 015290           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (409)
Q Consensus        43 ~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~  122 (409)
                      .+++|++++.++.|.+||.++++.                           +..+..+..           ..+.++.+ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~---------------------------~w~~~~~~~-----------~~~~~~~~-   44 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI---------------------------VWEYPLEKG-----------WECNSVAA-   44 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE---------------------------EEEEECCTT-----------CCCCEEEE-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE---------------------------EEEeCCCcc-----------CCCcCeEE-
Confidence            467899999999999999988773                           444444430           25778888 


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecC
Q 015290          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (409)
Q Consensus       123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (409)
                       +|+|++++  +.++.|..||. +++......                                                
T Consensus        45 -~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~------------------------------------------------   72 (276)
T 3no2_A           45 -TKAGEILF--SYSKGAKMITR-DGRELWNIA------------------------------------------------   72 (276)
T ss_dssp             -CTTSCEEE--ECBSEEEEECT-TSCEEEEEE------------------------------------------------
T ss_pred             -CCCCCEEE--eCCCCEEEECC-CCCEEEEEc------------------------------------------------
Confidence             78998888  45788999998 666544322                                                


Q ss_pred             CcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC
Q 015290          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (409)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (409)
                                  ......+.++.+.++|+.+++. . ++.+..+|..  ++.+..+.+... ...+......+++.++| 
T Consensus        73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~-~~~~~~~~~~v~~~~~G-  136 (276)
T 3no2_A           73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETG-IERPHAQFRQINKNKKG-  136 (276)
T ss_dssp             ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCS-CSSGGGSCSCCEECTTS-
T ss_pred             ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCC-CCcccccccCceECCCC-
Confidence                        1122356788899999999987 6 7777777754  666655543321 12222345567789999 


Q ss_pred             CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCC
Q 015290          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  359 (409)
Q Consensus       281 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~  359 (409)
                      +++++...++.|..||.. ++.    +..+..              .....++.+.++|++++++.+ +.|..+|..+ +
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~----~w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G  196 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQL----LNSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-N  196 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCE----EEEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-C
T ss_pred             CEEEEecCCCEEEEECCC-CCE----EEEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-C
Confidence            999999999999999987 654    233333              124556778899999998876 7899999886 8


Q ss_pred             cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      +.+-.+........         ....+..++..++|.++++.
T Consensus       197 ~~~w~~~~~~~~~~---------~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          197 RIVRRVNANDIEGV---------QLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             CEEEEEEGGGSBSC---------CCSEEEEEEECTTSCEEEEE
T ss_pred             cEEEEecCCCCCCc---------cccccccceEcCCCCEEEEe
Confidence            88888875432100         11123577888888877765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2.8e-13  Score=119.95  Aligned_cols=241  Identities=8%  Similarity=0.023  Sum_probs=136.5

Q ss_pred             CcEEEEEECCCCCEEEEEecC---Ce--EEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+..++|+|||++||.++.+   +.  |.+|++.+++.                            ..+..+.      
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------  104 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------  104 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence            457889999999999988754   34  66777766542                            1222223      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            . +..+.|  +|+|+.|+.++.+..      ............                     ...++.-.. 
T Consensus       105 ------~-~~~~~w--spdg~~l~~~~~~~~------~~~~~~~~~~~~---------------------~~~~g~~~~-  147 (347)
T 2gop_A          105 ------N-IRSLEW--NEDSRKLLIVGFKRR------EDEDFIFEDDVP---------------------AWFDDLGFF-  147 (347)
T ss_dssp             ------E-EEEEEE--CTTSSEEEEEEECCC------C---------CC---------------------CC--------
T ss_pred             ------C-ccceeE--CCCCCEEEEEEccCC------CcCCcEEEcccc---------------------eeecCcccc-
Confidence                  4 889999  899999988875420      000000000000                     000000000 


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC------C-eEEEEEccCCCceeeeeecC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMK  259 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------~-~i~lwd~~~~~~~~~~~~~~  259 (409)
                        ......+.+|++.+.   +.++.+ .. . .+..++|+|+| .++++ .+      . ...||.+. .+.....    
T Consensus       148 --~~~~~~l~~~d~~~~---~~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l----  213 (347)
T 2gop_A          148 --DGEKTTFWIFDTESE---EVIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM----  213 (347)
T ss_dssp             ----CEEEEEEEETTTT---EEEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE----
T ss_pred             --cCccceEEEEECCCC---eEEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe----
Confidence              001235777777653   221222 22 3 67889999999 77776 43      2 44566555 4543332    


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEeCC--------CeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  331 (409)
                          ..+ ..+..+  +|+| +.|+.++.+        ..|.+||  +++.    ..+...             +...+.
T Consensus       214 ----~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~----~~l~~~-------------~~~~~~  266 (347)
T 2gop_A          214 ----FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEV----MGILDE-------------VDRGVG  266 (347)
T ss_dssp             ----EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCE----EESSTT-------------CCSEEE
T ss_pred             ----ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCce----Eecccc-------------CCcccC
Confidence                223 344444  9999 777766643        3688888  4332    111111             234677


Q ss_pred             e-eEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          332 D-IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       332 ~-~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      . +.|+ || +++++++ +.++|| +. .++....+. +...+               .+++|+|  .++++++.++.
T Consensus       267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~~-~~~~v---------------~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          267 QAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIAK-GRHWI---------------MGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             EEEEET-TE-EEEEEEETTEEEEE-EE-SSSEEEEEC-SSSEE---------------EEEEESS--SEEEEEECSSS
T ss_pred             CccEEc-Cc-EEEEEecCCcEEEE-Ec-CCceEEEec-CCCeE---------------EeeeeeC--cEEEEEcCCCC
Confidence            5 8999 88 7777765 999999 87 465544333 33332               5899999  67777766654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=9.5e-14  Score=134.64  Aligned_cols=232  Identities=10%  Similarity=0.003  Sum_probs=140.2

Q ss_pred             CCCcEEEEEECCCCCEEEE-----EecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      |...+.+++|||||++||.     |+.+..|++||+.+++.                           +.  ..+...  
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~---------------------------~~--~~~~~~--  167 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW---------------------------SK--VDVIEG--  167 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB---------------------------CS--SCCBSC--
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC---------------------------cC--CcccCc--
Confidence            4557999999999999994     44457899999998763                           00  111100  


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeCCCe-------------EEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                              .....++|  +|||+.|+.++.|..             |++|++.++....                     
T Consensus       168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~---------------------  216 (695)
T 2bkl_A          168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD---------------------  216 (695)
T ss_dssp             --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC---------------------
T ss_pred             --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc---------------------
Confidence                    11257899  899999999988765             6666655443110                     


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCC----eEEEEEcc
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLE  247 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~----~i~lwd~~  247 (409)
                                                         ..+... ..+...+..+.|+|||++|+.+ .++    .|.+|+..
T Consensus       217 -----------------------------------~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~  260 (695)
T 2bkl_A          217 -----------------------------------TVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG  260 (695)
T ss_dssp             -----------------------------------EEEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred             -----------------------------------eEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence                                               111111 3355677899999999999876 554    56666554


Q ss_pred             CCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCccccc
Q 015290          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (409)
                       .+... .       +..+...+....+ ++| .+++...   .++.|.+||+.++... ....++..+           
T Consensus       261 -~~~~~-~-------l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~-----------  317 (695)
T 2bkl_A          261 -EKDFR-L-------LVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPED-----------  317 (695)
T ss_dssp             -CSSCE-E-------EEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCC-----------
T ss_pred             -CCceE-E-------eecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCC-----------
Confidence             23322 2       2334445556666 677 5444443   2578999998775420 000111110           


Q ss_pred             ccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       325 ~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                       ....+..++|+ ++.++++.. ++..+||.+...++....+..+ ...+               ..++++||++.|+
T Consensus       318 -~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~  378 (695)
T 2bkl_A          318 -SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAY  378 (695)
T ss_dssp             -SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEE
T ss_pred             -CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEE
Confidence             02357778888 667777776 4777777655335555555443 2221               4678889887766

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.60  E-value=1.1e-12  Score=112.85  Aligned_cols=201  Identities=12%  Similarity=0.178  Sum_probs=137.4

Q ss_pred             CCCcEEEEEE-CCCCCEEEEEec-CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCCcccccc
Q 015290           31 DVDIVSAIEF-DKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYL  107 (409)
Q Consensus        31 h~~~v~~v~~-~~~~~~la~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~  107 (409)
                      |...+..+++ .++++++++... ++.|.+|+.. ++                           .+..+. .+.      
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~---------------------------~~~~~~~~~~------  120 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ---------------------------FVRKFGATIL------  120 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC---------------------------EEEEECTTTC------
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc---------------------------EEEEecCccC------
Confidence            4467899999 578877766643 7899999943 33                           122232 222      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..+.++++  +++|+++++...++.|.+||.... ......                                 
T Consensus       121 ------~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~---------------------------------  158 (286)
T 1q7f_A          121 ------QHPRGVTV--DNKGRIIVVECKVMRVIIFDQNGN-VLHKFG---------------------------------  158 (286)
T ss_dssp             ------SCEEEEEE--CTTSCEEEEETTTTEEEEECTTSC-EEEEEE---------------------------------
T ss_pred             ------CCceEEEE--eCCCCEEEEECCCCEEEEEcCCCC-EEEEeC---------------------------------
Confidence                  46889999  789988777778899999996533 221110                                 


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                ...+...+..++++++++.+++. .++.|.+||..  +..+..+.     ..++
T Consensus       159 --------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~-----~~g~  205 (286)
T 1q7f_A          159 --------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIG-----GEGI  205 (286)
T ss_dssp             --------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEES-----CTTT
T ss_pred             --------------------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEc-----cCCc
Confidence                                      01233457899999999877777 89999999986  44444421     1223


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCC-eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ...+..++++|+| +++++...++ .|.+||.....     +..+..+.           ....+.+++++|+|+++++.
T Consensus       206 ~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~-----~~~~~~~~-----------~~~~~~~i~~~~~g~l~vs~  268 (286)
T 1q7f_A          206 TNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQL-----ISALESKV-----------KHAQCFDVALMDDGSVVLAS  268 (286)
T ss_dssp             SCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCE-----EEEEEESS-----------CCSCEEEEEEETTTEEEEEE
T ss_pred             cCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCE-----EEEEcccC-----------CCCcceeEEECCCCcEEEEC
Confidence            3568999999999 8888888776 99999965422     12232210           01246789999999887775


Q ss_pred             ecCeEEEEEccC
Q 015290          346 DYMNLKLWDIRM  357 (409)
Q Consensus       346 ~~~~v~iwd~~~  357 (409)
                      .++.|++|++..
T Consensus       269 ~~~~v~v~~~~~  280 (286)
T 1q7f_A          269 KDYRLYIYRYVQ  280 (286)
T ss_dssp             TTTEEEEEECSC
T ss_pred             CCCeEEEEEccc
Confidence            469999999863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=1.3e-13  Score=121.39  Aligned_cols=237  Identities=13%  Similarity=0.078  Sum_probs=153.4

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..|.++.|++++..++..+.++.++.|.-.                              ....+..+.           
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~-----------   44 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG-----------   44 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC-----------
T ss_pred             cccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC-----------
Confidence            457788999988888777778888888321                              233445555           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ..+.+++|  ++++++++++..++.|.+||..+++.....                                       
T Consensus        45 -~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------   82 (333)
T 2dg1_A           45 -LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF---------------------------------------   82 (333)
T ss_dssp             -CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE---------------------------------------
T ss_pred             -ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe---------------------------------------
Confidence             56789999  789987778888999999998877543321                                       


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC----CeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                            ..+...+.+++++|+++++++. .+    +.|.+||.. .+.....+.     ...+.
T Consensus        83 ----------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----~~~~~  134 (333)
T 2dg1_A           83 ----------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLSTA  134 (333)
T ss_dssp             ----------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSSC
T ss_pred             ----------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEc-----cCccC
Confidence                                  1234568899999999888877 55    689999987 443332211     01234


Q ss_pred             CceEEEEEeCCCCCEEEEEeC------CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290          268 EVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  341 (409)
                      ..+..++++|+| +++++...      .+.|..+|..+++.     ..+..             ....+..++|+|+|++
T Consensus       135 ~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~-------------~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          135 YCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQ-------------NISVANGIALSTDEKV  195 (333)
T ss_dssp             CCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEE-------------EESSEEEEEECTTSSE
T ss_pred             CcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE-----EEeec-------------CCCcccceEECCCCCE
Confidence            578999999999 87776653      35566666654432     11111             0234678999999987


Q ss_pred             EEEe-ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          342 LLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       342 l~sg-~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      |+.+ +. +.|.+||+...+..+..+......     ....   ...+..++++++|+++++...++.
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~~---~~~~~~i~~d~~G~l~v~~~~~~~  255 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFTG---HEGPDSCCIDSDDNLYVAMYGQGR  255 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECCS---SSEEEEEEEBTTCCEEEEEETTTE
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecCC---CCCCCceEECCCCCEEEEEcCCCE
Confidence            6655 33 899999996434443322100000     0000   001157999999987777655543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=7.5e-12  Score=117.02  Aligned_cols=299  Identities=12%  Similarity=0.052  Sum_probs=174.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEecc--CCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ....+..+.|+|||+++++++.|+.|.+||+.  +.+                           .+..+...        
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---------------------------~v~~i~~G--------  239 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---------------------------TVAEIKIG--------  239 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---------------------------EEEEEECC--------
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---------------------------EeEEEecC--------
Confidence            34467799999999999999999999999985  443                           23333332        


Q ss_pred             cceeccceEEEEEEec----CCCCEEEEEe-CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC-
Q 015290          109 SLEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-  182 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  182 (409)
                           .....++|  +    |||++++++. .+++|.++|..+.+........... +....+. ....+.....++.. 
T Consensus       240 -----~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~~~~~-p~~rva~i~~s~~~~  310 (567)
T 1qks_A          240 -----SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDEQEYH-PEPRVAAILASHYRP  310 (567)
T ss_dssp             -----SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTTCCEE-SCCCEEEEEECSSSS
T ss_pred             -----CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccccccc-CCCceEEEEEcCCCC
Confidence                 34678999  7    6999888764 5599999999888776654321100 0000000 00011112212221 


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeec-C
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-K  259 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~-~  259 (409)
                      .++..  ....+.|.++|........ +..+  ........+.|+|++++++++  .++.|.++|+. +++....+.+ .
T Consensus       311 ~~vv~--~~~~g~v~~vd~~~~~~~~-v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg  384 (567)
T 1qks_A          311 EFIVN--VKETGKILLVDYTDLNNLK-TTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG  384 (567)
T ss_dssp             EEEEE--ETTTTEEEEEETTCSSEEE-EEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS
T ss_pred             EEEEE--ecCCCeEEEEecCCCccce-eeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC
Confidence            22222  2346788888876533211 1111  233456688999999998775  78999999999 6777666544 2


Q ss_pred             CCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCcccc---ccccccccccccccCCcccccccccceeeeEe
Q 015290          260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                         -..|.+.--.+ ++|++..+++++. .++.|.++|....+..   .+.++.+..             ....-..+..
T Consensus       385 ---~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g~g~~~i~~  447 (567)
T 1qks_A          385 ---QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LGGGSLFIKT  447 (567)
T ss_dssp             ---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEEC
T ss_pred             ---cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CCCCCEEEEe
Confidence               12343322222 6887525555554 4689999998873311   111122222             0112244778


Q ss_pred             ccCCCEEEEee--------cCeEEEEEccCC-----CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          336 ANDGQHLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       336 s~~g~~l~sg~--------~~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      +|++++|.+..        .++|.++|+.+.     .+.+..+...+-     ..+.+  ..-.+..+.|+|+|+++..+
T Consensus       448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----AGITE--GQPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----HTCCS--SCCEEEEEEECTTSSEEEEE
T ss_pred             CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc-----cccCC--CCcceEeeeECCCCCEEEEE
Confidence            99999888754        259999999863     222244431100     00000  00112689999999987765


Q ss_pred             c
Q 015290          403 S  403 (409)
Q Consensus       403 s  403 (409)
                      .
T Consensus       521 ~  521 (567)
T 1qks_A          521 V  521 (567)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=1.4e-13  Score=124.10  Aligned_cols=252  Identities=8%  Similarity=-0.038  Sum_probs=137.6

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc-cceec--
Q 015290           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK-SLEIE--  113 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-~~~~~--  113 (409)
                      .+.|+|||++||.++.++.|.+|++.+++.                           ......+.. +.+-. .+...  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~---------------------------~~~~~~~~~-~~~~g~~l~~~~~  136 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEE---------------------------QVIYTVDEE-WKGYGTWVANSDC  136 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECCTT-EEEEEEEEECTTS
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCc---------------------------EEEEecccc-cCCCCCEEEeccC
Confidence            378999999999999999999999987652                           111111110 00000 00000  


Q ss_pred             c-----ceEEEEEEecCCCCEEEEE-----eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CC
Q 015290          114 E-----KINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SF  182 (409)
Q Consensus       114 ~-----~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (409)
                      .     ....+.|  +|+++.++.+     ..+..|.+||+.+++...+...              ........+++ ++
T Consensus       137 ~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--------------~~~~~~~~~sp~dg  200 (396)
T 3c5m_A          137 TKLVGIEILKRDW--QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD--------------TAWLGHPIYRPFDD  200 (396)
T ss_dssp             SEEEEEEEEGGGC--CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE--------------SSCEEEEEEETTEE
T ss_pred             Ccccccccccccc--CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC--------------CcccccceECCCCC
Confidence            0     0001345  6788777654     4667899999988776554321              11122223333 33


Q ss_pred             ceeeccccccc----ceeEEEecCCcccceeeeeecccc-ccceeEEEeCCCCCeEEEe-cC-----CeEEEEEccCCCc
Q 015290          183 AHGYHLEWTEN----MATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQ  251 (409)
Q Consensus       183 ~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~  251 (409)
                      ..++.......    ..|.+|++....    .+.+.... ...+..++|+|+|+.|+.+ .+     +.|++||+. .+.
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-~g~  275 (396)
T 3c5m_A          201 STVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE-TLE  275 (396)
T ss_dssp             EEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-TCC
T ss_pred             CEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-CCC
Confidence            33333222112    467888875422    12221211 3357889999999987765 33     449999998 454


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeC-CCCCEEEEEe----------------CCCeEEEEeCCCccccccccccccccc
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSS----------------SRGFVRLVDMRQSALCDHSARILRDAA  314 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~  314 (409)
                      ......     ..+    .. +.|+| +| +++++++                .++.|.+||+.+++.     ..+..+.
T Consensus       276 ~~~l~~-----~~~----~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~  339 (396)
T 3c5m_A          276 NEEVMV-----MPP----CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----QKLCKHS  339 (396)
T ss_dssp             EEEEEE-----CCS----EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBC-----CEEEECC
T ss_pred             eEEeee-----CCC----CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----EEccCCC
Confidence            333211     111    22 89999 99 7777654                347899999987653     2222211


Q ss_pred             cccCCccccc-ccccceeeeEeccCCCEEEEeec--CeEEEEEcc
Q 015290          315 ESHGSKSFFT-EIIASISDIKFANDGQHLLSRDY--MNLKLWDIR  356 (409)
Q Consensus       315 ~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~  356 (409)
                      ...   ..+. .-...+..++|+|||++|+..++  +...||.+.
T Consensus       340 ~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          340 TSW---DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCC---CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             Ccc---ccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            000   0000 00012566899999998887653  544454443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=1.8e-11  Score=107.32  Aligned_cols=254  Identities=7%  Similarity=0.027  Sum_probs=158.3

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      .....+.+. +++++++...++.|.+||..+++.                           +..+...            
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------~~~i~~~------------   83 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------VGRITGF------------   83 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECC------------
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------EEEcCCC------------
Confidence            456777775 355556666789999999988763                           3334322            


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       .....+++  +++++.+++...++.|.+||..+++............    ....+.+  +..    ....++.+....
T Consensus        84 -~~p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~----~~~~p~~--i~~----~~~~lyv~~~~~  150 (328)
T 3dsm_A           84 -TSPRYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM----ESGSTEQ--MVQ----YGKYVYVNCWSY  150 (328)
T ss_dssp             -SSEEEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT----TTCBCCC--EEE----ETTEEEEEECTT
T ss_pred             -CCCcEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccc----cCCCcce--EEE----ECCEEEEEcCCC
Confidence             46788999  5778444444489999999999988765544222000    0000011  111    112222222223


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC----------CeEEEEEccCCCceeeeeecCCC
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----------~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      ++.|.++|..+..   .+..+ .. ......++++|+|++++++ .+          +.|.++|.. +++....+.+.  
T Consensus       151 ~~~v~viD~~t~~---~~~~i-~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~~--  222 (328)
T 3dsm_A          151 QNRILKIDTETDK---VVDEL-TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKFK--  222 (328)
T ss_dssp             CCEEEEEETTTTE---EEEEE-EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT-TTEEEEEEECC--
T ss_pred             CCEEEEEECCCCe---EEEEE-Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC-CCeEEEEEecC--
Confidence            6789999987643   33332 11 2345678999999987777 54          789999998 56655553221  


Q ss_pred             cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC-CC
Q 015290          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQ  340 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~  340 (409)
                          .......++|+|++ +.|+.+..  .|.+||..+++...  ......             .......++++|+ +.
T Consensus       223 ----~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~--~~~~~~-------------~~~~p~gi~vdp~~g~  280 (328)
T 3dsm_A          223 ----LGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV--RPFLEF-------------RDTKYYGLTVNPNNGE  280 (328)
T ss_dssp             ----TTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS--SCSBCC-------------CSSCEEEEEECTTTCC
T ss_pred             ----CCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee--eeeecC-------------CCCceEEEEEcCCCCe
Confidence                12357899999998 77776654  89999998876421  011110             0245788999994 55


Q ss_pred             EEEEe----ec-CeEEEEEccCCCcceEEEecccCc
Q 015290          341 HLLSR----DY-MNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       341 ~l~sg----~~-~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      +.++.    .. +.|.+||..  ++.+..+.....+
T Consensus       281 lyva~~~~y~~~~~V~v~d~~--g~~~~~i~~G~~P  314 (328)
T 3dsm_A          281 VYVADAIDYQQQGIVYRYSPQ--GKLIDEFYVGIIP  314 (328)
T ss_dssp             EEEEECTTSSSEEEEEEECTT--CCEEEEEEEEESE
T ss_pred             EEEEcccccccCCEEEEECCC--CCEEEEEEeccCc
Confidence            55555    44 999999986  7888888765554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.55  E-value=1.7e-12  Score=113.88  Aligned_cols=212  Identities=11%  Similarity=0.102  Sum_probs=140.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee---------cCCC
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF---------QSHE  101 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~  101 (409)
                      +......++++|+|+++++...++.|++|+..+...                          .+..+         .++-
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~--------------------------~~~~~~~~~~~g~~~~~~  142 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG--------------------------PLLILGRSMQPGSDQNHF  142 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC--------------------------CSEEESBTTBCCCSTTCC
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE--------------------------EEEEecccCCCCCCcccc
Confidence            345788999999999888888899999999865421                          01112         1222


Q ss_pred             ccccccccceeccceEEEEEEecC-CCCEEEEEe-CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCC
Q 015290          102 PEFDYLKSLEIEEKINRVRWCAAP-NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (409)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (409)
                                  .....|++  ++ ++.++++.+ .++.|++|+.. +............                    
T Consensus       143 ------------~~P~~ia~--~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~--------------------  187 (329)
T 3fvz_A          143 ------------CQPTDVAV--EPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSG--------------------  187 (329)
T ss_dssp             ------------SSEEEEEE--CTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCS--------------------
T ss_pred             ------------CCCcEEEE--eCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCC--------------------
Confidence                        46889999  78 787777776 68999999954 4333221100000                    


Q ss_pred             CCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeee
Q 015290          180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVD  257 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~  257 (409)
                                                  ..   ...++-..+..++++|+ +..+++. .++.|++|+.. +++.+..+.
T Consensus       188 ----------------------------~~---~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~-~G~~~~~~~  235 (329)
T 3fvz_A          188 ----------------------------SS---PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD-TKEFVREIK  235 (329)
T ss_dssp             ----------------------------SS---CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT-TCCEEEEEC
T ss_pred             ----------------------------CC---CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC-CCcEEEEEe
Confidence                                        00   00122345688999998 6666666 89999999998 666666542


Q ss_pred             cCCCcCcCccCceEEEEEeCCCCCEEEEE-------eCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYS-------SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (409)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (409)
                           ...+...+.+++|+| + ..+++.       ..+..|++||..+++..    ..+..          ..++...+
T Consensus       236 -----~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~----~~~~~----------~~~~~~~p  294 (329)
T 3fvz_A          236 -----HASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEII----DVFKP----------VRKHFDMP  294 (329)
T ss_dssp             -----CTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEE----EEECC----------SSSCCSSE
T ss_pred             -----ccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEE----EEEcC----------CCCccCCe
Confidence                 234556788999999 4 444433       34558999999887642    22221          01223568


Q ss_pred             eeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          331 SDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       331 ~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      ..++++|+|.++++... +.|++|++.
T Consensus       295 ~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          295 HDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             eEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            89999999976666654 999999986

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=1.1e-11  Score=107.12  Aligned_cols=232  Identities=9%  Similarity=0.069  Sum_probs=149.1

Q ss_pred             cEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           34 IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        34 ~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ---...|+|+ +.++++...++.|..||..++..                            ..+. ..           
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~-----------   53 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRVT-MD-----------   53 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEEE-CS-----------
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEe-CC-----------
Confidence            4457889995 55666666788999999887652                            1111 12           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ..+.++++  +++|+++++ . ++.|.+||..+++...+.....                                   
T Consensus        54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~-----------------------------------   93 (297)
T 3g4e_A           54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN-----------------------------------   93 (297)
T ss_dssp             -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred             -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence             57889999  789985444 4 5679999998776544321000                                   


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC---------CeEEEEEccCCCceeeeeecCCCc
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                                            ......++.++++|+|+++++. ..         ....+|.+...+.....       
T Consensus        94 ----------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------  144 (297)
T 3g4e_A           94 ----------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-------  144 (297)
T ss_dssp             ----------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-------
T ss_pred             ----------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-------
Confidence                                  1122346789999999977764 32         33466666533332222       


Q ss_pred             CcCccCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCC--CccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          263 MDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                       .........++|+|++ +.| ++.+.++.|.+||+.  ++.+..  .+.+..          +..+......++++++|
T Consensus       145 -~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          145 -FDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             -EEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTS
T ss_pred             -eeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCC
Confidence             1223456899999999 655 556678899999873  443210  011111          11112457789999999


Q ss_pred             CEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc-CCCCeEEEccc
Q 015290          340 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  404 (409)
Q Consensus       340 ~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~s~s~  404 (409)
                      ++.++... +.|..||..+ ++.+..+..+...+               ++++|. ||++.|..++.
T Consensus       211 ~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          211 KLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence            87777655 8899999875 78888887664433               699998 88887665443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=1.1e-10  Score=100.80  Aligned_cols=272  Identities=7%  Similarity=-0.027  Sum_probs=166.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      +...+.+++++++|+++++...++.|.+||.. +...                          ...+..+.         
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--------------------------~~~~~~~~---------   56 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT--------------------------EYPLPTPD---------   56 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--------------------------EEECSSTT---------
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--------------------------EecCCccc---------
Confidence            34679999999999987776667899999987 4310                          01111222         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..+.++++  +++|..+++...++.|..|+.. ++..... ...           .......+...+++.+......
T Consensus        57 ---~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~-----------~~~~~~~i~~~~~g~l~v~~~~  118 (299)
T 2z2n_A           57 ---AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEYT-LPN-----------PDSAPYGITEGPNGDIWFTEMN  118 (299)
T ss_dssp             ---CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE-CSS-----------TTCCEEEEEECTTSCEEEEETT
T ss_pred             ---CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEEe-CCC-----------cCCCceeeEECCCCCEEEEecC
Confidence               57889999  7899887777778889999986 3332221 100           0011112222223332222211


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                        ++.+..++...    .............+..+++.++++.+++. .++.|..||..  +..... .     .......
T Consensus       119 --~~~i~~~d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~  184 (299)
T 2z2n_A          119 --GNRIGRITDDG----KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITES--GDITEF-K-----IPTPASG  184 (299)
T ss_dssp             --TTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE-E-----CSSTTCC
T ss_pred             --CceEEEECCCC----CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC--CcEEEe-e-----CCCCCCc
Confidence              45677777622    11111112344568899999999888777 78899999983  333222 1     2233456


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      +..++++++| .++++...++.|.+||. +++.     ..+..           ..+...+.+++++++|++.++.. ++
T Consensus       185 ~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          185 PVGITKGNDD-ALWFVEIIGNKIGRITT-SGEI-----TEFKI-----------PTPNARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             EEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-----EEEEC-----------SSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             ceeEEECCCC-CEEEEccCCceEEEECC-CCcE-----EEEEC-----------CCCCCCceeEEECCCCCEEEeccCCc
Confidence            8899999998 87777777889999998 5542     11111           01134688999999998766654 48


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      .|..||..  ++ +..+......             ..+.++++ ++|.+.++.+.+
T Consensus       247 ~i~~~d~~--g~-~~~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~~~  286 (299)
T 2z2n_A          247 KIGRLTSN--NI-IEEYPIQIKS-------------AEPHGICF-DGETIWFAMECD  286 (299)
T ss_dssp             EEEEEETT--TE-EEEEECSSSS-------------CCEEEEEE-CSSCEEEEETTT
T ss_pred             eEEEECCC--Cc-eEEEeCCCCC-------------CccceEEe-cCCCEEEEecCC
Confidence            99999983  43 3333211110             01258889 899877775544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=1.5e-11  Score=107.15  Aligned_cols=234  Identities=10%  Similarity=0.113  Sum_probs=146.0

Q ss_pred             CcEEEEEECCCCCEEEE-------EecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee--ecCCCcc
Q 015290           33 DIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPE  103 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~  103 (409)
                      ....+++|+++|+++++       +..++.|.+||..+++..                         .+..  ..++.  
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~--   70 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG--   70 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE--
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC--
Confidence            34679999999988887       677899999998766520                         0000  01122  


Q ss_pred             ccccccceeccceEEEEEEecCC-CCEEEEEeCCCeEEEEEcCCceeeee-eccCCCcccccccccccccCceeccCCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                                ..+.++.+  +++ ++ |..++..+.|.+||.. ++.... ....                         
T Consensus        71 ----------~~~~~i~~--~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~-------------------------  111 (314)
T 1pjx_A           71 ----------GIPAGCQC--DRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDS-------------------------  111 (314)
T ss_dssp             ----------CCEEEEEE--CSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCT-------------------------
T ss_pred             ----------CCCceEEE--ecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccC-------------------------
Confidence                      57889999  688 65 4444444578889987 554322 1100                         


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC---------------CeEEEEE
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWN  245 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------------~~i~lwd  245 (409)
                                                      .......+.+++++++|+.+++. .+               +.|..|+
T Consensus       112 --------------------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (314)
T 1pjx_A          112 --------------------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             --------------------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             --------------------------------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence                                            01122356789999999887776 54               4566666


Q ss_pred             ccCCCceeeeeecCCCcCcCccCceEEEEEe----CCCCCEEE-EEeCCCeEEEEeCC-CccccccccccccccccccCC
Q 015290          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLLA-YSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGS  319 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~-s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~  319 (409)
                      ..  +.....        ..+......++|+    |++ +.++ +...++.|.+||.. .++...  ...+..       
T Consensus       160 ~~--g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~-------  219 (314)
T 1pjx_A          160 TD--GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH-------  219 (314)
T ss_dssp             TT--SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE-------
T ss_pred             CC--CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE-------
Confidence            54  332222        1223456889999    998 6554 44567899999976 332110  011111       


Q ss_pred             cccccccc-cceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          320 KSFFTEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       320 ~~~~~~~~-~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                         +.++. ..+..++++++|+++++.. ++.|.+||..+ ++.+..+..+...+               .+++|+|+|+
T Consensus       220 ---~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~---------------~~i~~~~dg~  280 (314)
T 1pjx_A          220 ---IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQTK  280 (314)
T ss_dssp             ---CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTSS
T ss_pred             ---CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCc---------------eeEEECCCCC
Confidence               11112 3567899999998887765 48999999874 66666665543322               5899999999


Q ss_pred             eEEEcc
Q 015290          398 HFATGS  403 (409)
Q Consensus       398 ~l~s~s  403 (409)
                      .|..++
T Consensus       281 ~l~v~~  286 (314)
T 1pjx_A          281 TIFVTE  286 (314)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=1.7e-12  Score=114.85  Aligned_cols=213  Identities=14%  Similarity=0.116  Sum_probs=133.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEe---------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCC
Q 015290           31 DVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (409)
                      ....+..+++  ||+++|...         .++.|.+|++.+++.                            ..+    
T Consensus        13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l----   58 (347)
T 2gop_A           13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI----   58 (347)
T ss_dssp             CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE----
T ss_pred             eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc----
Confidence            3467888888  899887653         256788999887652                            111    


Q ss_pred             ccccccccceeccceEEEEEEecCCCCEEEEEeCC---C--eEEEEEcCCceeeeeeccCCCcccccccccccccCceec
Q 015290          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (409)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (409)
                                  ..+..++|  +|||+.|+.++.+   +  .|.+|++.+++.....                       
T Consensus        59 ------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-----------------------  101 (347)
T 2gop_A           59 ------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-----------------------  101 (347)
T ss_dssp             ------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-----------------------
T ss_pred             ------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-----------------------
Confidence                        25778899  8999999887643   2  3666777666543321                       


Q ss_pred             cCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC-----------------
Q 015290          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----------------  238 (409)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-----------------  238 (409)
                                                             .+.. +..++|+|+|+.|+.+ .+                 
T Consensus       102 ---------------------------------------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A          102 ---------------------------------------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             ---------------------------------------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             ---------------------------------------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence                                                   1223 7889999999988876 42                 


Q ss_pred             ----------CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC-------eEEEEeCCCcc
Q 015290          239 ----------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSA  301 (409)
Q Consensus       239 ----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-------~i~iwd~~~~~  301 (409)
                                ..|.+||+. .+..+..+       .. . .+..+.|+|+|  ++++++.++       ...+|.+.+++
T Consensus       142 ~g~~~~~~~~~~l~~~d~~-~~~~~~~l-------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTE-SEEVIEEF-------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             --------CEEEEEEEETT-TTEEEEEE-------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             cCcccccCccceEEEEECC-CCeEEeee-------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc
Confidence                      568899987 55542332       22 2 67889999998  666665432       33444433332


Q ss_pred             ccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c--------CeEEEEEccCCCcceEEEecccCcc
Q 015290          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHLR  372 (409)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~--------~~v~iwd~~~~~~~~~~~~~~~~~~  372 (409)
                      .     ..+..             + ..+..+  +|||++|+.++ +        ..|.+||  . ++.......+...+
T Consensus       210 ~-----~~l~~-------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~  265 (347)
T 2gop_A          210 E-----EKMFE-------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGV  265 (347)
T ss_dssp             E-----EEEEE-------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEE
T ss_pred             e-----EEecc-------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCccc
Confidence            1     22211             1 233333  99999888664 2        3677787  2 44433333333332


Q ss_pred             cccccccCCCCccceee-EEEcCCCCeEEEcccCCC
Q 015290          373 PKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       373 ~~~~~~~~~~~~~~v~~-~~~spdg~~l~s~s~dg~  407 (409)
                                     .. +.|+ || ++++++.++.
T Consensus       266 ---------------~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          266 ---------------GQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             ---------------EEEEEET-TE-EEEEEEETTE
T ss_pred             ---------------CCccEEc-Cc-EEEEEecCCc
Confidence                           34 8899 88 8888888764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=4.6e-12  Score=112.56  Aligned_cols=237  Identities=11%  Similarity=0.062  Sum_probs=136.8

Q ss_pred             EEEECCCCCEEEEEe----------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        37 ~v~~~~~~~~la~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .++|+|||++++++.          .++.|.+||..+.+.                           +..+......   
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~---  103 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR---  103 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence            899999999999886          367899999886652                           2222211000   


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeee-eccCCCccc-------ccccccccccCceec
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFV-------SSENTLLAEKNFMNE  176 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~  176 (409)
                         .........+++  +|+|++|+++..  +++|.+||+.+++.... ........+       ........++.....
T Consensus       104 ---~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v  178 (361)
T 2oiz_A          104 ---VQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTI  178 (361)
T ss_dssp             ---CCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred             ---cccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEE
Confidence               000034667889  899999998863  68999999998876654 332110000       000000011111110


Q ss_pred             cCCC---------------------------CCceeecccccccceeEEEecCCcccceeeeee-ccc----c----ccc
Q 015290          177 HNPP---------------------------SFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHA----H----DFN  220 (409)
Q Consensus       177 ~~~~---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~----~----~~~  220 (409)
                      ....                           ....++..  ..++.+.++|+..... .....+ ...    +    ...
T Consensus       179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          179 NLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFV--SYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             EECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEE--BTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECC
T ss_pred             EECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEE--eCCCeEEEEEecCCCc-eecccccccCccccccccccCC
Confidence            0000                           00011111  1245677777753211 111110 000    0    011


Q ss_pred             eeEEEeCCCCCeEEEe-c-----------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC
Q 015290          221 INSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  288 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~-----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~  288 (409)
                      ...++++|+++.++++ .           .+.|.+||+. +.+.+..+       ..+.  +.+++|+|+| ++|++++.
T Consensus       256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~-t~~~v~~i-------~~~~--p~~ia~spdg-~~l~v~n~  324 (361)
T 2oiz_A          256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-TKQRVARI-------PGRD--ALSMTIDQQR-NLMLTLDG  324 (361)
T ss_dssp             SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT-TTEEEEEE-------ECTT--CCEEEEETTT-TEEEEECS
T ss_pred             eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC-CCcEEEEE-------ecCC--eeEEEECCCC-CEEEEeCC
Confidence            1237899998888776 4           3479999998 67777663       3343  8899999999 88888876


Q ss_pred             CCeEEEEeCCCc--cccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          289 RGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       289 dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                       +.|.+||..++  +.    +..+..             +......++++|+|+
T Consensus       325 -~~v~v~D~~t~~l~~----~~~i~~-------------~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 -GNVNVYDISQPEPKL----LRTIEG-------------AAEASLQVQFHPVGG  360 (361)
T ss_dssp             -SCEEEEECSSSSCEE----EEEETT-------------SCSSEEEEEECCCSC
T ss_pred             -CeEEEEECCCCccee----eEEecc-------------CCCCcEEEEecCCCC
Confidence             99999999998  53    222211             124567899999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=2.9e-11  Score=113.05  Aligned_cols=204  Identities=11%  Similarity=0.051  Sum_probs=142.9

Q ss_pred             CCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEE
Q 015290           42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  121 (409)
Q Consensus        42 ~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~  121 (409)
                      |.+.++++...++.|.++|..+++.                           +..+...             ..+..+.|
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------~~~i~~g-------------~~p~~v~~  204 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTG-------------YAVHISRL  204 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECS-------------SCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeE---------------------------EEEEeCC-------------CCccceEE
Confidence            4456677777899999999988763                           3334332             35678999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcC--CceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEE
Q 015290          122 CAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  199 (409)
Q Consensus       122 ~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  199 (409)
                        +|||+++++++.|+.|.+||+.  +.+......                                             
T Consensus       205 --SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---------------------------------------------  237 (567)
T 1qks_A          205 --SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---------------------------------------------  237 (567)
T ss_dssp             --CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---------------------------------------------
T ss_pred             --CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---------------------------------------------
Confidence              8999999999999999999995  443322211                                             


Q ss_pred             ecCCcccceeeeeeccccccceeEEEeC----CCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCc---CccC-c
Q 015290          200 NVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-V  269 (409)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~---~~~~-~  269 (409)
                                     .  ......++|+    |+|++++++  .++++.++|.. +.+.+..+........   .|.. .
T Consensus       238 ---------------~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~r  299 (567)
T 1qks_A          238 ---------------I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPR  299 (567)
T ss_dssp             ---------------C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCC
T ss_pred             ---------------c--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCc
Confidence                           1  1234689999    699999887  68999999988 6777776544321111   1222 6


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-  347 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-  347 (409)
                      +..+..+++++.+++....+|.|.++|....+..  .+..+..              ......+.|+|+|+++++++ . 
T Consensus       300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~--~v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~s  363 (567)
T 1qks_A          300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNL--KTTEISA--------------ERFLHDGGLDGSHRYFITAANAR  363 (567)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE--EEEEEEC--------------CSSEEEEEECTTSCEEEEEEGGG
T ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc--eeeeeec--------------cccccCceECCCCCEEEEEeCCC
Confidence            7889999988566666777899999998764310  0111111              23466789999999988775 3 


Q ss_pred             CeEEEEEccCCCcceEEEec
Q 015290          348 MNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +.|.++|+.+ ++.+..+..
T Consensus       364 n~V~ViD~~t-~kl~~~i~v  382 (567)
T 1qks_A          364 NKLVVIDTKE-GKLVAIEDT  382 (567)
T ss_dssp             TEEEEEETTT-TEEEEEEEC
T ss_pred             CeEEEEECCC-CcEEEEEec
Confidence            9999999986 777766654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=1e-11  Score=121.28  Aligned_cols=240  Identities=13%  Similarity=0.059  Sum_probs=134.8

Q ss_pred             CcEEEEEECCCCCEEEEEecC-----CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      ..+..++|||||++||.++.+     ..|++||+.+++.                           +. ...+.      
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~---------------------------~~-~~~~~------  208 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP---------------------------LA-DELKW------  208 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE---------------------------EE-EEEEE------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---------------------------CC-ccCCC------
Confidence            478899999999999987654     3699999998763                           11 01111      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..+..++|  +|| +.|+.++.|+..+     .+.....                                   
T Consensus       209 ------~~~~~~~w--spD-~~l~~~~~~~~~~-----~~~~~~~-----------------------------------  239 (741)
T 1yr2_A          209 ------VKFSGLAW--LGN-DALLYSRFAEPKE-----GQAFQAL-----------------------------------  239 (741)
T ss_dssp             ------EESCCCEE--STT-SEEEEEECCCC-------------C-----------------------------------
T ss_pred             ------ceeccEEE--ECC-CEEEEEEecCccc-----ccccccC-----------------------------------
Confidence                  22357889  789 8998887765410     0000000                                   


Q ss_pred             ccccccceeEEEecCCcccce-eeeeeccccccceeEEEeCCCCCeEEEe-cCC-----eEEEEEccCCC--ceeeeeec
Q 015290          188 LEWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISD--QCFNIVDM  258 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~-----~i~lwd~~~~~--~~~~~~~~  258 (409)
                         .....|++|++.+..... .+... ..+...+..+.|+|||++|+.. .++     .|++||+. .+  .....   
T Consensus       240 ---~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~---  311 (741)
T 1yr2_A          240 ---NYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT-NGKIGPVTA---  311 (741)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE-TTEECCCEE---
T ss_pred             ---CCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC-CCCCcccEE---
Confidence               001124444443322111 11110 2233357889999999998876 543     89999997 33  21233   


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeC----CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  334 (409)
                          +..+...+... ++|+| ..|+..+.    ++.|.+||+.++.  .....++..             +...+..++
T Consensus       312 ----l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~-------------~~~~l~~~~  370 (741)
T 1yr2_A          312 ----LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPE-------------SKDNLESVG  370 (741)
T ss_dssp             ----EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECC-------------CSSEEEEEE
T ss_pred             ----ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecC-------------CCCeEEEEE
Confidence                22233334444 34888 77776664    3459999987642  000112211             123466777


Q ss_pred             eccCCCEEEEee-cCeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          335 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       335 ~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      |+ ++.++++.. ++..+||.+...++....+..+ ...+               ..++++||++.|+
T Consensus       371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~  422 (741)
T 1yr2_A          371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA---------------SGLSGRPGDRHAY  422 (741)
T ss_dssp             EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE---------------EEEECCBTCSCEE
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE---------------EEeecCCCCCEEE
Confidence            77 456666665 4666666554335555555432 2221               4788999988666

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=8e-11  Score=102.09  Aligned_cols=231  Identities=9%  Similarity=-0.001  Sum_probs=147.7

Q ss_pred             CCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .........|+|+|+ +++++..++.|..|+.. +.                            ...+..+.        
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~----------------------------~~~~~~~~--------   85 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT----------------------------VDVLLDAT--------   85 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC----------------------------EEEEEESC--------
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC----------------------------EEEEeCCC--------
Confidence            455677899999998 56677778899999873 32                            12233333        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..+..+++  +++|+++++...++.|.+|+.. ++.......                                  
T Consensus        86 ----~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~----------------------------------  124 (305)
T 3dr2_A           86 ----AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR----------------------------------  124 (305)
T ss_dssp             ----SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECE----------------------------------
T ss_pred             ----CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEec----------------------------------
Confidence                57889999  7899866665666889999875 443222110                                  


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE----e-c-------------CCeEEEEEccCCCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ  251 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~----~-~-------------d~~i~lwd~~~~~~  251 (409)
                                             ........++.++++|+|+++++    | .             .+.|..||.. .+.
T Consensus       125 -----------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~  180 (305)
T 3dr2_A          125 -----------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSP  180 (305)
T ss_dssp             -----------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCC
T ss_pred             -----------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCc
Confidence                                   00011234567899999988886    4 2             2456666654 333


Q ss_pred             eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC------CeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      ....        . .......++|+|++ +.|+.+...      +.|.+||+..+.+.  ....+..            .
T Consensus       181 ~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~------------~  236 (305)
T 3dr2_A          181 LQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH--DRRHFAS------------V  236 (305)
T ss_dssp             CEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE--EEEEEEC------------C
T ss_pred             EEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc--CCeEEEE------------C
Confidence            3222        1 22356789999999 866666554      78999998754311  0111111            0


Q ss_pred             cccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      .......++++++|++.++. .+.|.+|+..  ++.+..+..+...                .+++|+|+++.|..++.+
T Consensus       237 ~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          237 PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEETT
T ss_pred             CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcCC
Confidence            01345678999999955544 4559999974  7777777765532                489999999888877665


Q ss_pred             C
Q 015290          406 R  406 (409)
Q Consensus       406 g  406 (409)
                      +
T Consensus       298 ~  298 (305)
T 3dr2_A          298 C  298 (305)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=4.6e-11  Score=105.01  Aligned_cols=271  Identities=11%  Similarity=0.091  Sum_probs=156.0

Q ss_pred             EEEECCCCCEEEEEe----------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        37 ~v~~~~~~~~la~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .++++|||++++++.          .++.|.+||..+.+.                           +.++.-...    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v---------------------------~~~I~v~~g----  130 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP---------------------------TADIELPDA----  130 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE---------------------------EEEEEETTC----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE---------------------------EEEEECCCc----
Confidence            499999999888775          367899999988763                           222210000    


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                       ...........+.+  +|||++++++..  ++.|.++|+.+++..........     ....+.....          +
T Consensus       131 -~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~----------~  192 (386)
T 3sjl_D          131 -PRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT----------F  192 (386)
T ss_dssp             -CCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE----------E
T ss_pred             -cccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce----------e
Confidence             00000023456888  899999988864  68999999999988766542110     0000100000          0


Q ss_pred             eecccccccceeEEEecCCcccceeee-eeccccccce-eEEEe-CCCCCeEEEecCCeEEEEEccCCC-ceeeeeecCC
Q 015290          185 GYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNI-NSISN-NSDCETFVSADDLRINLWNLEISD-QCFNIVDMKP  260 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~v-~~l~~-~~~~~~l~~~~d~~i~lwd~~~~~-~~~~~~~~~~  260 (409)
                      .   ....||.+-+.++.......... ..+.....++ ...+| .++|++++...+|.+.+.|+.... .....+.+-.
T Consensus       193 ~---~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~  269 (386)
T 3sjl_D          193 F---MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  269 (386)
T ss_dssp             E---EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             E---EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence            0   11225555555554311110000 0111111222 12355 467766666678999999997222 1222221000


Q ss_pred             C---cCcCccCceEEEEEeCCCCCEEEEEeC----------CCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          261 S---NMDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       261 ~---~~~~~~~~v~~~~~~p~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                      .   ......+....++++|++ +.++....          .+.|.+.|+.+++.    ++.+..              .
T Consensus       270 ~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv----~~~i~v--------------g  330 (386)
T 3sjl_D          270 EAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEM--------------G  330 (386)
T ss_dssp             HHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEE--------------E
T ss_pred             cccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeE----EEEEEC--------------C
Confidence            0   000012233457779998 65555432          25799999999775    244443              2


Q ss_pred             cceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC
Q 015290          328 ASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  395 (409)
Q Consensus       328 ~~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  395 (409)
                      ..++.+++++|++ +|++..  ++.|.++|..+ ++.+.++.....+.                .+.+++|
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p~----------------~l~~s~d  384 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHGP----------------QVITTAD  384 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSSC----------------CEEEECC
T ss_pred             CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCCc----------------eeEECCc
Confidence            4688999999997 666653  49999999987 89999998776663                6888777

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=1.7e-09  Score=93.18  Aligned_cols=270  Identities=6%  Similarity=-0.060  Sum_probs=164.3

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...+.+++++++|++.++...++.|.+|+.. ++.                         .. ..+..+.          
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-------------------------~~-~~~~~~~----------   61 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-------------------------KE-FEVPTPD----------   61 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------EE-EECSSTT----------
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-------------------------EE-EECCCCC----------
Confidence            4578999999999988777678999999977 432                         00 1112222          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..+.++++  ++++.++++...++.|..+|.. ++..........            .........+.+.+.....  
T Consensus        62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~------------~~~~~i~~~~~g~l~v~~~--  122 (300)
T 2qc5_A           62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD------------SGPYGITEGLNGDIWFTQL--  122 (300)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT------------CCEEEEEECSTTCEEEEET--
T ss_pred             --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC------------CCCccceECCCCCEEEEcc--
Confidence              57889999  7888877777768889999987 544322110000            1111111122222222211  


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                      .++.+..++.+.    +............+..+++.++++.+++. .++.|..+|..  +..... .     .......+
T Consensus       123 ~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~  190 (300)
T 2qc5_A          123 NGDRIGKLTADG----TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEEY-P-----LPTNAAAP  190 (300)
T ss_dssp             TTTEEEEECTTS----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEEE-E-----CSSTTCCE
T ss_pred             CCCeEEEECCCC----CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEEe-e-----CCCCCCCc
Confidence            144666676642    11111112344568899999999866666 68899999874  333222 1     22334568


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-Ce
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~  349 (409)
                      ..++++++| +++++....+.|.+||. +++.     ..+..           ......+.+++++++|++.++... +.
T Consensus       191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~  252 (300)
T 2qc5_A          191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEI-----SEYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQ  252 (300)
T ss_dssp             EEEEECTTS-SEEEEETTTTEEEEECT-TCCE-----EEEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred             ceEEECCCC-CEEEEccCCCEEEEEcC-CCcE-----EEEEC-----------CCCCCCceEEEECCCCCEEEeccCCCe
Confidence            899999998 88877777788999998 4332     11111           001245788999999986666644 89


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      |..||..  ++.. .+......             ..+.+++++++|++.++..
T Consensus       253 i~~~~~~--g~~~-~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          253 IGRITND--NTIQ-EYQLQTEN-------------AEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             EEEECTT--SCEE-EEECCSTT-------------CCCCCEEECTTSCEEEECS
T ss_pred             EEEECCC--CcEE-EEECCccC-------------CccceeEeCCCCCEEEEcc
Confidence            9999973  4332 33221110             0115899999998776654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=3.4e-10  Score=99.00  Aligned_cols=230  Identities=10%  Similarity=0.030  Sum_probs=142.7

Q ss_pred             cEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        34 ~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      -.....|+|++ .++++...++.|..||..+++.                            ..+. ..           
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~-----------   89 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP-----------   89 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS-----------
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC-----------
Confidence            35678999974 5566666788999999887642                            1111 12           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                       ..+.++.|  +++|+++++. .+ .|.+||..+++........  .                                 
T Consensus        90 -~~v~~i~~--~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~--~---------------------------------  129 (326)
T 2ghs_A           90 -FMGSALAK--ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELE--S---------------------------------  129 (326)
T ss_dssp             -SCEEEEEE--EETTEEEEEE-TT-EEEEEETTTCCEEEEECSS--T---------------------------------
T ss_pred             -CcceEEEE--eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC--C---------------------------------
Confidence             57899999  6788766654 44 4889998877654321100  0                                 


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC----CeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                                            ......++.++++|+|+++++. .+    +...||.+. .+.....        ....
T Consensus       130 ----------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~--------~~~~  178 (326)
T 2ghs_A          130 ----------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL--------FADI  178 (326)
T ss_dssp             ----------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE--------EEEE
T ss_pred             ----------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEe--------eCCC
Confidence                                  0112357889999999877655 32    234444444 3433222        1122


Q ss_pred             CceEEEEEeCCCCCEEE-EEeCCCeEEEEeCC--Cc-cccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          268 EVITSAEFHPIYCNLLA-YSSSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~-s~s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      .....++|+|++ +.++ +.+.++.|.+||+.  ++ ....  ...+..          +.........++++++|.+.+
T Consensus       179 ~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          179 SIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             SSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCEEE
T ss_pred             cccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCEEE
Confidence            356789999999 7554 44567899999986  44 3211  011111          001123467899999998777


Q ss_pred             Eeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc-CCCCeEEEccc
Q 015290          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  404 (409)
Q Consensus       344 sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~s~s~  404 (409)
                      +... +.|.+||..  ++.+..+..+...+               ++++|+ ||++.|+.++.
T Consensus       246 a~~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          246 ARWGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred             EEeCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence            6644 899999984  67777776554332               689998 89887655443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.41  E-value=5e-11  Score=115.91  Aligned_cols=192  Identities=14%  Similarity=0.031  Sum_probs=124.5

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCC-----eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ..+..++|  ||||++|+.++.++     .|++||+.+++.....                                   
T Consensus       125 ~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-----------------------------------  167 (710)
T 2xdw_A          125 VALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-----------------------------------  167 (710)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-----------------------------------
T ss_pred             EEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-----------------------------------
Confidence            46888999  89999998775443     8999999888654321                                   


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCe----------------EEEEEccCCCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR----------------INLWNLEISDQ  251 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~----------------i~lwd~~~~~~  251 (409)
                                                . ....+..++|+|||+.|+.+ .++.                |++|++. ++.
T Consensus       168 --------------------------~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~-t~~  219 (710)
T 2xdw_A          168 --------------------------L-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG-TDQ  219 (710)
T ss_dssp             --------------------------E-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT-SCG
T ss_pred             --------------------------c-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECC-CCc
Confidence                                      0 11125678999999999887 6654                9999998 443


Q ss_pred             ee--eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-----CCeEEEEeCCC------ccccccccccccccccccC
Q 015290          252 CF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQ------SALCDHSARILRDAAESHG  318 (409)
Q Consensus       252 ~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~  318 (409)
                      ..  .++     ....+...+..+.|+|+| ++|+..+.     +..|.+||+.+      +...   ...+..      
T Consensus       220 ~~~~~v~-----~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l~~------  284 (710)
T 2xdw_A          220 SEDILCA-----EFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILK---WVKLID------  284 (710)
T ss_dssp             GGCEEEE-----CCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEEEC------
T ss_pred             ccceEEe-----ccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccc---eEEeeC------
Confidence            21  111     123355668899999999 88777654     56899999876      3211   122222      


Q ss_pred             CcccccccccceeeeEeccCCCEEEEeec-----CeEEEEEccCCCc--ceEEEecccCcccccccccCCCCccceeeEE
Q 015290          319 SKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (409)
Q Consensus       319 ~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-----~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (409)
                             +...+.. .|+|+|+.|+..++     ..|.+||+.. +.  ....+..+....             .+..++
T Consensus       285 -------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~-------------~~~~~~  342 (710)
T 2xdw_A          285 -------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-PEESKWKVLVPEHEKD-------------VLEWVA  342 (710)
T ss_dssp             -------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-CCGGGCEEEECCCSSC-------------EEEEEE
T ss_pred             -------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-CCcccceeccCCCCCC-------------eEEEEE
Confidence                   1223333 58899987775532     4699999875 32  234444443310             014788


Q ss_pred             EcCCCCeEEEcccCCC
Q 015290          392 VSGDGLHFATGSYRRD  407 (409)
Q Consensus       392 ~spdg~~l~s~s~dg~  407 (409)
                      |++++.++++...|+.
T Consensus       343 ~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          343 CVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             EETTTEEEEEEEETTE
T ss_pred             EEcCCEEEEEEEECCE
Confidence            8888888888877763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.41  E-value=8.8e-11  Score=101.36  Aligned_cols=112  Identities=10%  Similarity=-0.024  Sum_probs=77.6

Q ss_pred             cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCce---eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC---FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      +......++|+|+++.+++. .++.|.+|++...+..   ...+       ..+...+..++++++| +++++.  ++.|
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-------~~~~~~p~~i~~d~~G-~l~v~~--~~~v  239 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-------TVEPGKTDGLRVDAGG-LIWASA--GDGV  239 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-------CCSSSCCCSEEEBTTS-CEEEEE--TTEE
T ss_pred             CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-------eCCCCCCCeEEECCCC-CEEEEc--CCeE
Confidence            34456789999999998666 7899999998633333   2221       1234456789999999 877666  7889


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEe-ccCCCEEEEeecCeEEEEEccC
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF-ANDGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~sg~~~~v~iwd~~~  357 (409)
                      .+||... +.    ...+..             +.. +.+++| +|+++.|++++.+.+.-++..+
T Consensus       240 ~~~~~~g-~~----~~~~~~-------------~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~  286 (296)
T 3e5z_A          240 HVLTPDG-DE----LGRVLT-------------PQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNV  286 (296)
T ss_dssp             EEECTTS-CE----EEEEEC-------------SSC-CCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred             EEECCCC-CE----EEEEEC-------------CCC-ceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence            9999863 32    133332             123 788999 6899988888776666666653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.40  E-value=2.7e-10  Score=102.68  Aligned_cols=265  Identities=9%  Similarity=0.033  Sum_probs=154.5

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      -.....|+|+++++++++...++.|++||..++..                           ...... .          
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------------~~~~~~-~----------  171 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------------TTVHPG-F----------  171 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------------EEEEET-C----------
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------------EEeecc-C----------
Confidence            34688999999999888777789999999987652                           111222 1          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                        .... ++|  +++++.|+++..++  .|.+|+..++.......                                   
T Consensus       172 --~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g-----------------------------------  211 (409)
T 3hrp_A          172 --KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG-----------------------------------  211 (409)
T ss_dssp             --CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE-----------------------------------
T ss_pred             --CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEee-----------------------------------
Confidence              2334 888  78999998888766  78888776543211100                                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                            .........+.+++++|++..|+.+ .++.|+.||.. .+.. ..+...  ...++..
T Consensus       212 ----------------------~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~~-~~~~~~--~~~g~~~  265 (409)
T 3hrp_A          212 ----------------------QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQEV-TLIKQL--ELSGSLG  265 (409)
T ss_dssp             ----------------------ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCCE-EEEEEC--CCCSCCC
T ss_pred             ----------------------eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCCE-EEEecc--cccCCCC
Confidence                                  0001133456788999955556667 88899999987 3332 221000  0111212


Q ss_pred             ce-E-EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcc--cccccccceeeeEeccCCCEEEE
Q 015290          269 VI-T-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       269 ~v-~-~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      .- . .++|+|++..++++-..++.|+.|+.....      ..+..+........  .....-.....++++|+|+++++
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            21 3 999999542777777778999999976531      12211000000000  00000134688999999997777


Q ss_pred             ee-c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          345 RD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       345 g~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      -. . +.|+.||+.. +. +..+.++..........-..........++++|+|.++++...++.|
T Consensus       340 d~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I  403 (409)
T 3hrp_A          340 DGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI  403 (409)
T ss_dssp             ETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred             eCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence            66 5 9999999753 54 44554441110000000000011224699999999888877766554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=1e-10  Score=99.35  Aligned_cols=195  Identities=7%  Similarity=0.017  Sum_probs=133.6

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCCccccccccce
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLE  111 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~  111 (409)
                      ..+.+++++++|+++++.. ++.|.+||..+...                            ..+. ...          
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~----------------------------~~~~~~~~----------  107 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ----------------------------TVLPFDGL----------  107 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----------------------------EECCCCSC----------
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----------------------------eeeecCCc----------
Confidence            4678899999999666655 88999999876542                            1111 111          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..+.++++  +++|.++++...++.|.+|+..+.......                                      
T Consensus       108 --~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------------------------  145 (270)
T 1rwi_B          108 --NYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------------------------------------  145 (270)
T ss_dssp             --SSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSCEECC--------------------------------------
T ss_pred             --CCCcceEE--CCCCCEEEEECCCCEEEEEECCCceeEeec--------------------------------------
Confidence              46889999  788987777777888988865433211100                                      


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                             ......+..++++++++.+++. .++.|.+||.. .......       ...+...+
T Consensus       146 -----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~~p  194 (270)
T 1rwi_B          146 -----------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNNQVVL-------PFTDITAP  194 (270)
T ss_dssp             -----------------------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT-TCCEEEC-------CCSSCCSE
T ss_pred             -----------------------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC-CCceEee-------cccCCCCc
Confidence                                   1122345789999999877777 78899999987 3332221       12223568


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-Ce
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~  349 (409)
                      ..++++++| .++++...++.|.+||......     .....            .+...+.+++++++|+++++... +.
T Consensus       195 ~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~-----~~~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~  256 (270)
T 1rwi_B          195 WGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-----TVLPF------------TGLNTPLAVAVDSDRTVYVADRGNDR  256 (270)
T ss_dssp             EEEEECTTC-CEEEEETTTSCEEEECTTCSCC-----EECCC------------CSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred             eEEEECCCC-CEEEEECCCCcEEEEcCCCCcc-----eeecc------------CCCCCceeEEECCCCCEEEEECCCCE
Confidence            899999999 8888888888999999866432     11111            01235789999999987777654 99


Q ss_pred             EEEEEccC
Q 015290          350 LKLWDIRM  357 (409)
Q Consensus       350 v~iwd~~~  357 (409)
                      |+++++..
T Consensus       257 v~~~~~~~  264 (270)
T 1rwi_B          257 VVKLTSLE  264 (270)
T ss_dssp             EEEECCCG
T ss_pred             EEEEcCCC
Confidence            99999874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=5e-10  Score=98.75  Aligned_cols=257  Identities=8%  Similarity=-0.001  Sum_probs=144.9

Q ss_pred             CcEEEEEECCCCCEEEEEe--cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ..+..|+++|+|+++++..  .++.++||.+.+++..        .           .|...  ....+|-         
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--------~-----------~p~~~--~~~~~~~---------   66 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--------P-----------FPPQS--GNAIITF---------   66 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--------E-----------SCCCC--SSCCCCC---------
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--------c-----------CCCcc--cCcccce---------
Confidence            5789999999999988864  2343666666533210        0           00000  0011222         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeC-----CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                         ..+.+|++  +++++++++-..     ++.|.+||+.+++...........                          
T Consensus        67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--------------------------  115 (343)
T 2qe8_A           67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--------------------------  115 (343)
T ss_dssp             ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--------------------------
T ss_pred             ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--------------------------
Confidence               57999999  788865555433     578999999888754433211000                          


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c----CCeEEEEEccCCCceeeeeecCC
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                                                   ..+...+..+++++++..++.+ .    ++.|.+||+. .+.....+....
T Consensus       116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~~~~~~  165 (343)
T 2qe8_A          116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARVLQGYP  165 (343)
T ss_dssp             -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEECTTCT
T ss_pred             -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEEecCCC
Confidence                                         1123345788888765555444 3    6789999987 555444431100


Q ss_pred             C--------cCcC--------------ccCceEEEEEeCCCCCEEEEEeCCC-eEEEEeCC---Cccccccccccccccc
Q 015290          261 S--------NMDD--------------LTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMR---QSALCDHSARILRDAA  314 (409)
Q Consensus       261 ~--------~~~~--------------~~~~v~~~~~~p~~~~~l~s~s~dg-~i~iwd~~---~~~~~~~~~~~~~~~~  314 (409)
                      .        ...+              ....+..++|+|++ +.|+.+..++ .+..++..   .+....  ......  
T Consensus       166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~--  240 (343)
T 2qe8_A          166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTD--AELGSK--  240 (343)
T ss_dssp             TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCH--HHHHTT--
T ss_pred             cccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCCh--hhhhcc--
Confidence            0        0000              01246889999999 8888777665 44444421   110000  000000  


Q ss_pred             cccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc
Q 015290          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (409)
                           . ...++......++++++|.++++... +.|.+||... ++...........              .+.+++|.
T Consensus       241 -----~-~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~--------------~p~~va~~  299 (343)
T 2qe8_A          241 -----I-ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLS--------------WTDSFNFG  299 (343)
T ss_dssp             -----C-EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGS--------------CEEEEEEC
T ss_pred             -----e-EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCcee--------------cCCeeEEC
Confidence                 0 00112335678999999988887765 9999999833 5533222211111              12589999


Q ss_pred             CCCCeEEEcccCC
Q 015290          394 GDGLHFATGSYRR  406 (409)
Q Consensus       394 pdg~~l~s~s~dg  406 (409)
                      ++|+++++.+..+
T Consensus       300 ~~g~l~v~~~~~~  312 (343)
T 2qe8_A          300 SDGYLYFDCNQLH  312 (343)
T ss_dssp             TTSCEEEEECCGG
T ss_pred             CCCcEEEEeCccc
Confidence            9998887766443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.9e-11  Score=107.83  Aligned_cols=189  Identities=8%  Similarity=0.047  Sum_probs=123.0

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..++.+++  ++...++++|+.++ +++|++...+......   ..                                 +
T Consensus        38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~---------------------------------~   78 (388)
T 1xip_A           38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSD---ST---------------------------------P   78 (388)
T ss_dssp             SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SC---------------------------------C
T ss_pred             ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---cc---------------------------------c
Confidence            46889999  68888999999985 6669876443100000   00                                 0


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                                   .++...  ..+.. |+.|+|  ++.+|+++.++.|++||++... ....       ...|...+.++
T Consensus        79 -------------~~~~~~--~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~-~~~~-------~~~~~~~v~~i  132 (388)
T 1xip_A           79 -------------LTFKWE--KEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELS-EFRT-------VTSFEKPVFQL  132 (388)
T ss_dssp             -------------CCCSEE--EECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTT-CEEE-------EEECSSCEEEE
T ss_pred             -------------ccceEE--eeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhh-ccCc-------cceeecceeeE
Confidence                         011111  23455 999999  8999999977999999998333 2222       23455667777


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ecCeEEE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL  352 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~i  352 (409)
                      .+.+.   .+++++.||.|.+||+.++...    .   .              ...|++++|||+|  ++.| .+|.+++
T Consensus       133 ~~~~p---~~av~~~dG~L~v~dl~~~~~~----~---~--------------~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          133 KNVNN---TLVILNSVNDLSALDLRTKSTK----Q---L--------------AQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             EECSS---EEEEEETTSEEEEEETTTCCEE----E---E--------------EESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             EecCC---CEEEEECCCCEEEEEccCCccc----c---c--------------cCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            76653   3888899999999999876531    1   1              3479999999999  4445 4699999


Q ss_pred             EEccCCCcc--eEEEecccCccccccccc-CCCCccceeeEEEcCCCCeEEE
Q 015290          353 WDIRMDSTP--VATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       353 wd~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      |+... +..  ..++.....       +. +.+.-+.|.++.|.+++.+|++
T Consensus       187 ~~~~~-~~~~~k~~I~~Pp~-------~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          187 FAWRN-GEMEKQFEFSLPSE-------LEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEET-TEEEEEEEECCCHH-------HHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCC-ccccccceecCCcc-------cccccCCCeeEEEEEEecCCeEEEE
Confidence            98874 343  445522110       00 0001133479999999998886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.37  E-value=6e-11  Score=115.03  Aligned_cols=189  Identities=9%  Similarity=0.014  Sum_probs=117.2

Q ss_pred             cceEEEEEEecCCCCEEEEE-----eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ..+.+++|  ||||++|+.+     +.+.+|++||+.+++......                                  
T Consensus       121 ~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~----------------------------------  164 (695)
T 2bkl_A          121 VSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV----------------------------------  164 (695)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC----------------------------------
T ss_pred             EEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc----------------------------------
Confidence            57889999  8999999843     334689999998876431000                                  


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCe-------------EEEEEccCCCce--
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-------------INLWNLEISDQC--  252 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~-------------i~lwd~~~~~~~--  252 (409)
                                               +...  ....++|+|||+.|+.+ .+..             |++|++. ++..  
T Consensus       165 -------------------------~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~-t~~~~~  216 (695)
T 2bkl_A          165 -------------------------IEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG-TEPSKD  216 (695)
T ss_dssp             -------------------------BSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT-SCGGGC
T ss_pred             -------------------------cCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC-CCchhc
Confidence                                     0111  11468999999999987 7665             9999998 4431  


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC----eEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ..++     ....+...+.++.|+|+| ++|+..+.++    .|.+||..+++.     ..+..             +..
T Consensus       217 ~lv~-----~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~-------------~~~  272 (695)
T 2bkl_A          217 TVVH-----ERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-----RLLVK-------------GVG  272 (695)
T ss_dssp             EEEE-----CCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-----EEEEE-------------CSS
T ss_pred             eEEE-----ecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-----EEeec-------------CCC
Confidence            1121     134455678999999999 8777776555    677776544432     22222             123


Q ss_pred             ceeeeEeccCCCEEEEee----cCeEEEEEccCCCcc--eEEEeccc-CcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          329 SISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP--VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~----~~~v~iwd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      .+....+ ++|.+++...    ++.|.+||+.. +..  ...+..+. ...              +..++|+ ++.++++
T Consensus       273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~--------------l~~~~~~-~~~lv~~  335 (695)
T 2bkl_A          273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSAS--------------LLSVSIV-GGHLSLE  335 (695)
T ss_dssp             CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSCE--------------EEEEEEE-TTEEEEE
T ss_pred             ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCCe--------------EEEEEEE-CCEEEEE
Confidence            3445555 6666444443    27899999875 332  23333332 211              1467777 6777778


Q ss_pred             cccCCC
Q 015290          402 GSYRRD  407 (409)
Q Consensus       402 ~s~dg~  407 (409)
                      ...|+.
T Consensus       336 ~~~dg~  341 (695)
T 2bkl_A          336 YLKDAT  341 (695)
T ss_dssp             EEETTE
T ss_pred             EEECCE
Confidence            777764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=2e-11  Score=107.78  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=124.3

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..++.+++++...++++|+.++ +++|+.+....         .+                    ..-..++......++
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~---------~~--------------------~~~~~~~~~~~~~~l   87 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRD---------HI--------------------TSDSTPLTFKWEKEI   87 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH---------HH--------------------HSSSCCCCCSEEEEC
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhh---------hh--------------------ccccccccceEEeeC
Confidence            4799999999999999999875 66799764331         00                    000000111112223


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      .. |+.|+|    ++..|+++ .++.|++||+.+.......                                       
T Consensus        88 p~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~---------------------------------------  122 (388)
T 1xip_A           88 PD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV---------------------------------------  122 (388)
T ss_dssp             TT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE---------------------------------------
T ss_pred             CC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc---------------------------------------
Confidence            36 999999    77899888 8899999999765422110                                       


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                            ..+...+.++.+.+.  .++++ .||.+.+||+. .+....           +...|+
T Consensus       123 ----------------------~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~-~~~~~~-----------~~~~Vs  166 (388)
T 1xip_A          123 ----------------------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR-TKSTKQ-----------LAQNVT  166 (388)
T ss_dssp             ----------------------EECSSCEEEEEECSS--EEEEEETTSEEEEEETT-TCCEEE-----------EEESEE
T ss_pred             ----------------------ceeecceeeEEecCC--CEEEEECCCCEEEEEcc-CCcccc-----------ccCCce
Confidence                                  123344566666543  27777 99999999998 444332           335799


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccc---ccccceeeeEeccCCCEEEE
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT---EIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +++|+|+|   ++.|..||.+++|+...+....  .+.+..      + ..+.   +|...|.++.|.++++++++
T Consensus       167 ~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~------P-p~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          167 SFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSL------P-SELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECC------C-HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecC------C-cccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999998   5778899999999887654200  011211      0 0011   24678999999999999986

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=1.3e-10  Score=112.57  Aligned_cols=145  Identities=10%  Similarity=-0.006  Sum_probs=83.5

Q ss_pred             cccceeEEEeCCCCCeEEEe-c----CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC--
Q 015290          217 HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--  289 (409)
Q Consensus       217 ~~~~v~~l~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--  289 (409)
                      +...+..+.|+|||++|+.. .    .+.|+++|+.........       +..+....... ++++|..+++....+  
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~  303 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAP  303 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence            34456789999999988753 2    358999998733223333       23344444444 666663455555443  


Q ss_pred             -CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--c--CeEEEEEccCCCcceEE
Q 015290          290 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVAT  364 (409)
Q Consensus       290 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--~--~~v~iwd~~~~~~~~~~  364 (409)
                       +.|..+|+.++...  ..+.+..             |...+.  .|++++++|+...  +  ..|++||+.  +.....
T Consensus       304 ~~~l~~~d~~~~~~~--~~~~l~~-------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~  364 (693)
T 3iuj_A          304 NRRLVTVDAANPGPA--HWRDLIP-------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVRE  364 (693)
T ss_dssp             TCEEEEEETTSCCGG--GCEEEEC-------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEE
T ss_pred             CCEEEEEeCCCCCcc--ccEEEec-------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEE
Confidence             57889998875420  0011111             223333  8999999887653  3  378999986  444444


Q ss_pred             EecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      +.......              +..+.++|++..|+..
T Consensus       365 l~~p~~~~--------------~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          365 VALPGLGS--------------VSGFNGKHDDPALYFG  388 (693)
T ss_dssp             ECCSSSSE--------------EEECCCCTTCSCEEEE
T ss_pred             eecCCCce--------------EEeeecCCCCCEEEEE
Confidence            43222110              1356667777765543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.33  E-value=8.5e-09  Score=91.61  Aligned_cols=286  Identities=8%  Similarity=-0.001  Sum_probs=161.9

Q ss_pred             EECCCCCEEEEEec--CC---eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        39 ~~~~~~~~la~~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      ...|+++++.+...  ..   .|.+||..+++.                           +..+....            
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------   67 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------   67 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence            44578887777653  22   889999987663                           33333222            


Q ss_pred             cceEEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                      .+  .+.+  +|||+.++.+.          .++.|.+||..+.+............     +. ..........++++.
T Consensus        68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-----~~-~g~~p~~~~~spDG~  137 (373)
T 2mad_H           68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----FD-VGPYSWMNANTPNNA  137 (373)
T ss_pred             CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-----cc-cCCCccceEECCCCC
Confidence            23  7889  89999998885          36789999998776655433210000     00 001122445567777


Q ss_pred             eeecccccccceeEEEecCCcccceeeee-eccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      +++......++.|.++| .+.   +.+.. + .. .   .++.+.|+++. +++. .||.+.++|. . +..........
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~---~~~~~~i-~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~~~~~  206 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGG---SSDDQLL-SS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAGLVGA  206 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCC---CEEeEEc-CC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEEeccc
Confidence            77776654457888888 763   33333 2 11 1   12455566543 3444 8999999999 3 33332221110


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      . +.+.........+.+++ ..++..+.++.+.+.|+.......  ...+....... ....+  .......++++||++
T Consensus       207 ~-~~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~-~~~~~--~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          207 M-LTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGR-KADTW--RPGGWQQVAYLKSSD  279 (373)
T ss_pred             c-ccCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcc-cccce--ecCceEeEEECCCCC
Confidence            0 11111112335667776 444444477899999987643210  11111100000 00000  012244578999998


Q ss_pred             EEEEeec-----------CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEccc-CCC
Q 015290          341 HLLSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSY-RRD  407 (409)
Q Consensus       341 ~l~sg~~-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~-dg~  407 (409)
                      .|..+.+           +.|.++|..+ .+.+..+......                ..++|+|||+ +|+++.. ++.
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~  342 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEV  342 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCe
Confidence            7776431           5799999986 7888888655443                4899999999 6777663 554


Q ss_pred             C
Q 015290          408 N  408 (409)
Q Consensus       408 i  408 (409)
                      |
T Consensus       343 V  343 (373)
T 2mad_H          343 L  343 (373)
T ss_pred             E
Confidence            3

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=3.1e-10  Score=96.58  Aligned_cols=182  Identities=9%  Similarity=0.032  Sum_probs=126.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcc
Q 015290          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (409)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  205 (409)
                      .++.|++++.|+.|.+||..+++......                                                   
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~---------------------------------------------------   32 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP---------------------------------------------------   32 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence            45689999999999999998887765432                                                   


Q ss_pred             cceeeeeeccccc-cceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          206 HARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       206 ~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                                .+. ..+.++++.|+|++++ +.++.|..||..  ++.+..+..      +....+.++.+.|+| ++++
T Consensus        33 ----------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~--G~~~W~~~~------~~~~~~~~~~~~~dG-~~lv   92 (276)
T 3no2_A           33 ----------LEKGWECNSVAATKAGEILF-SYSKGAKMITRD--GRELWNIAA------PAGCEMQTARILPDG-NALV   92 (276)
T ss_dssp             ----------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT--SCEEEEEEC------CTTCEEEEEEECTTS-CEEE
T ss_pred             ----------CCccCCCcCeEECCCCCEEE-eCCCCEEEECCC--CCEEEEEcC------CCCccccccEECCCC-CEEE
Confidence                      122 3467889999999888 546679999984  555555321      123467899999999 9998


Q ss_pred             EEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcce
Q 015290          285 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  362 (409)
Q Consensus       285 s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~  362 (409)
                      +.+. ++.+..+|. +++..    ..+.. ...      ...+......+++.++|+++++... +.|..||..  ++.+
T Consensus        93 ~~~~~~~~v~~vd~-~Gk~l----~~~~~-~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~  158 (276)
T 3no2_A           93 AWCGHPSTILEVNM-KGEVL----SKTEF-ETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLL  158 (276)
T ss_dssp             EEESTTEEEEEECT-TSCEE----EEEEE-CCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred             EecCCCCEEEEEeC-CCCEE----EEEec-cCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEE
Confidence            8877 778888886 44431    22221 000      0111124556788999999998875 999999985  8888


Q ss_pred             EEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ..+.....+                .++...++|.++++++.++.|
T Consensus       159 w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v  188 (276)
T 3no2_A          159 NSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCF  188 (276)
T ss_dssp             EEEECSSCC----------------CEEEECTTSCEEEECBTTSEE
T ss_pred             EEEECCCCc----------------cceeEcCCCCEEEEeCCCCeE
Confidence            888765433                367778888888877766543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.32  E-value=4.7e-10  Score=98.24  Aligned_cols=187  Identities=14%  Similarity=0.001  Sum_probs=121.9

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      .....+.+   .+++.+++...++.|.+||..+++......                                       
T Consensus        44 ~~~~~i~~---~~~~lyv~~~~~~~v~viD~~t~~~~~~i~---------------------------------------   81 (328)
T 3dsm_A           44 DVAQSMVI---RDGIGWIVVNNSHVIFAIDINTFKEVGRIT---------------------------------------   81 (328)
T ss_dssp             SCEEEEEE---ETTEEEEEEGGGTEEEEEETTTCCEEEEEE---------------------------------------
T ss_pred             ccceEEEE---ECCEEEEEEcCCCEEEEEECcccEEEEEcC---------------------------------------
Confidence            34667777   345566666778999999999886644321                                       


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                                             .......++++++++.+++. .++.|.+||.. +.+....+....  ..+.......
T Consensus        82 -----------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~  135 (328)
T 3dsm_A           82 -----------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQ  135 (328)
T ss_dssp             -----------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCC
T ss_pred             -----------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcce
Confidence                                   12346788998888655666 79999999998 666655543221  0111124456


Q ss_pred             EEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c---
Q 015290          273 AEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---  347 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~---  347 (409)
                      +++ .++ .++++.. .++.|.++|..+++..    ..+..              ......++++|+|+++++.. +   
T Consensus       136 i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          136 MVQ-YGK-YVYVNCWSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             EEE-ETT-EEEEEECTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred             EEE-ECC-EEEEEcCCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccC
Confidence            677 344 5555544 4889999999987642    22222              12356789999999777663 3   


Q ss_pred             -------CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          348 -------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       348 -------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                             +.|.++|..+ ++....+.......+              ..++|+||+++|..+.
T Consensus       196 ~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p--------------~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWP--------------SEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             CSSCBCCCEEEEEETTT-TEEEEEEECCTTCCC--------------EEEEECTTSCEEEEES
T ss_pred             CccccCCceEEEEECCC-CeEEEEEecCCCCCc--------------eeEEEecCCCEEEEEc
Confidence                   6899999875 666666653221111              5899999999887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.32  E-value=9.9e-09  Score=88.29  Aligned_cols=239  Identities=8%  Similarity=-0.009  Sum_probs=147.2

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...+.+++++++|.++++...++.|..|+... +.                         +.+ .+....          
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-------------------------~~~-~~~~~~----------   98 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG-II-------------------------KEY-TLPNPD----------   98 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-------------------------EEE-ECSSTT----------
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE-------------------------EEE-eCCCcC----------
Confidence            46789999999999888777688899998752 21                         001 111122          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..+.++++  ++++.++++...++.|..||. +++.........            ..........+++.+.....  
T Consensus        99 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~------------~~~~~~i~~~~~g~l~v~~~--  159 (299)
T 2z2n_A           99 --SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK------------GSYPSFITLGSDNALWFTEN--  159 (299)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSST------------TCCEEEEEECTTSCEEEEET--
T ss_pred             --CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEecCCCC------------CCCCceEEEcCCCCEEEEeC--
Confidence              57889999  688888777777889999998 554433211000            01111122222222222211  


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                      .++.+..++. +   ++............+..++++++++.+++. .++.|..||..  +.... +.     ...+...+
T Consensus       160 ~~~~i~~~~~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~-----~~~~~~~~  227 (299)
T 2z2n_A          160 QNNAIGRITE-S---GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS--GEITE-FK-----IPTPNARP  227 (299)
T ss_dssp             TTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EE-----CSSTTCCE
T ss_pred             CCCEEEEEcC-C---CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC--CcEEE-EE-----CCCCCCCc
Confidence            1456777776 2   122221113344567899999999877777 78899999983  33222 11     23345678


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeE
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v  350 (409)
                      .+++++++| +++++...++.|..||. ++..     ..+..           ..+...+.++++ ++|++.++...+.|
T Consensus       228 ~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-----~~~~~-----------~~~~~~~~~i~~-~~g~l~v~~~~~~l  288 (299)
T 2z2n_A          228 HAITAGAGI-DLWFTEWGANKIGRLTS-NNII-----EEYPI-----------QIKSAEPHGICF-DGETIWFAMECDKI  288 (299)
T ss_dssp             EEEEECSTT-CEEEEETTTTEEEEEET-TTEE-----EEEEC-----------SSSSCCEEEEEE-CSSCEEEEETTTEE
T ss_pred             eeEEECCCC-CEEEeccCCceEEEECC-CCce-----EEEeC-----------CCCCCccceEEe-cCCCEEEEecCCcE
Confidence            999999999 87777667889999998 3332     22211           011246788999 88887776655777


Q ss_pred             EEEEccC
Q 015290          351 KLWDIRM  357 (409)
Q Consensus       351 ~iwd~~~  357 (409)
                      ..++.++
T Consensus       289 ~~~~~~~  295 (299)
T 2z2n_A          289 GKLTLIK  295 (299)
T ss_dssp             EEEEEC-
T ss_pred             EEEEcCc
Confidence            7788763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.31  E-value=4.7e-09  Score=93.31  Aligned_cols=254  Identities=10%  Similarity=-0.007  Sum_probs=143.1

Q ss_pred             EEEECCCCCEEEEEe----------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCC-Ccccc
Q 015290           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (409)
Q Consensus        37 ~v~~~~~~~~la~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (409)
                      .++|+|||++++++.          .++.|.+||..+.+.                           +..+.-. ..+  
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~---------------------------~~~i~~~~~~~--  120 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAPR--  120 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE---------------------------EEEEECCCccc--
Confidence            899999999998885          367899999987653                           1211110 000  


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeee-eccCCCcccccccccccccCceeccCCCCC
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                          .........+.|  +|||++|+++..  ++.|.++| .+++.... .....     +          ......+..
T Consensus       121 ----~~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----~----------~~~~~~~~~  178 (373)
T 2mad_H          121 ----FDVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----C----------YHIHPGAPS  178 (373)
T ss_pred             ----cccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----e----------EEEEeCCCc
Confidence                000023457888  899999998864  57899999 88876544 32110     0          000001111


Q ss_pred             ceeecccccccceeEEEecCCcccceeee--eeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC-ceeeeeec
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM  258 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~  258 (409)
                      .+.   ....++.+.+++. +........  ..+.+.........+.+++..++.. ..+.+.+.|+.... .....+++
T Consensus       179 ~~~---~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          179 TFY---LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             eEE---EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence            111   1223677777777 422221111  0001111111234556665555444 77889999986221 12222211


Q ss_pred             CCCc---CcCccCceEEEEEeCCCCCEEEEEeC----------CCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          259 KPSN---MDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       259 ~~~~---~~~~~~~v~~~~~~p~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      ....   ..........+.++|++ +.++.+..          .+.|.++|..+++.    +..+..             
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v----v~~i~~-------------  316 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT----SSQISL-------------  316 (373)
T ss_pred             cCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEE----EEEEEC-------------
Confidence            1100   00012334457899998 65555432          35799999988764    233333             


Q ss_pred             cccceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEE
Q 015290          326 IIASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~  365 (409)
                       ......++|+|||+ +++++.  ++.|.+||..+ ++.+..+
T Consensus       317 -g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~i  357 (373)
T 2mad_H          317 -GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQST  357 (373)
T ss_pred             -CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-CCEEeee
Confidence             23578999999999 677765  49999999986 7777763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.26  E-value=7.1e-10  Score=108.28  Aligned_cols=190  Identities=12%  Similarity=0.060  Sum_probs=114.2

Q ss_pred             cceEEEEEEecCCCCEEEEEeCC-----CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ..+..++|  ||||++|+.++.+     ..|++||+.+++.....                                   
T Consensus       163 ~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-----------------------------------  205 (741)
T 1yr2_A          163 TALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-----------------------------------  205 (741)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             EEEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-----------------------------------
Confidence            36888999  8999999887543     46999999887653210                                   


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCC--------------eEEEEEccCCCce-
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--------------RINLWNLEISDQC-  252 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~--------------~i~lwd~~~~~~~-  252 (409)
                                                 .+...+..++|+|| +.|+.+ .++              .|++|++. ++.. 
T Consensus       206 ---------------------------~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~  256 (741)
T 1yr2_A          206 ---------------------------LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG-TPQSA  256 (741)
T ss_dssp             ---------------------------EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT-SCGGG
T ss_pred             ---------------------------CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC-CCchh
Confidence                                       01111346789999 888876 544              38899987 3331 


Q ss_pred             -eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----CeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          253 -FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       253 -~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                       ..++     ....+...+..+.|+|+| ++|+..+.+     ..|.+||+.++...  ....+..             +
T Consensus       257 ~~lv~-----~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~-------------~  315 (741)
T 1yr2_A          257 DQPVF-----ATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIP-------------D  315 (741)
T ss_dssp             CEEEE-----CCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEEC-------------S
T ss_pred             CEEEe-----ccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecC-------------C
Confidence             1121     023344468899999999 888777654     38999998765210  0022221             0


Q ss_pred             ccceeeeEeccCCCEEEEeec-----CeEEEEEccCC-CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          327 IASISDIKFANDGQHLLSRDY-----MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~~-----~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      ....... ++|+|+.|+..++     +.|.+||+... ++....+..+...+               ..++|+ ++.+++
T Consensus       316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l---------------~~~~~~-~~~lv~  378 (741)
T 1yr2_A          316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL---------------ESVGIA-GNRLFA  378 (741)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE---------------EEEEEE-BTEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE---------------EEEEEE-CCEEEE
Confidence            1223333 3488988876542     56999998742 12333333333221               356666 556666


Q ss_pred             EcccCCC
Q 015290          401 TGSYRRD  407 (409)
Q Consensus       401 s~s~dg~  407 (409)
                      +...|+.
T Consensus       379 ~~~~dg~  385 (741)
T 1yr2_A          379 SYIHDAK  385 (741)
T ss_dssp             EEEETTE
T ss_pred             EEEECCE
Confidence            7666653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=6.9e-09  Score=91.90  Aligned_cols=171  Identities=12%  Similarity=0.099  Sum_probs=97.1

Q ss_pred             eEEEeCCCCCeEEEec--------------------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE--eCCC
Q 015290          222 NSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIY  279 (409)
Q Consensus       222 ~~l~~~~~~~~l~~~~--------------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~  279 (409)
                      ..+.|+|+++.++++.                    +.+|.+||+. .++.+..+++.     ........+.|  +|++
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg-----~~g~~P~~i~f~~~Pdg  264 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLG-----EENRMALELRPLHDPTK  264 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESC-----TTEEEEEEEEECSSTTC
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecC-----CCCCccceeEeeECCCC
Confidence            3577899999888873                    6899999999 56666665432     11223456656  9999


Q ss_pred             CCEEEEEe------CCCeEEEEeCCCccccccccccccccccccCC--c----ccccccccceeeeEeccCCCEEEEeec
Q 015290          280 CNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGS--K----SFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       280 ~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                       ++++.++      .+++|.+|....++..  ..+.+.. ...+..  .    ..|.+-......+.+||||++|.++..
T Consensus       265 -~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi-~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr  340 (462)
T 2ece_A          265 -LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEI-PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW  340 (462)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEE-CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred             -CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeC-CCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence             6666555      5678888776544321  1111111 000000  0    001111235788999999999998863


Q ss_pred             --CeEEEEEccCCC--cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          348 --MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       348 --~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                        +.|.+||+...+  +.+..+...... ..........-......++++|||++|+++.
T Consensus       341 g~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          341 GIGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence              999999986322  344444432110 0000000000000014899999999998876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.24  E-value=6.5e-09  Score=90.25  Aligned_cols=116  Identities=9%  Similarity=0.063  Sum_probs=79.1

Q ss_pred             ceeEEEeC----CCCCeEEEe--cCCeEEEEEccCCCcee--eeeecCCCcCcCcc-CceEEEEEeCCCCCEEEEEeCCC
Q 015290          220 NINSISNN----SDCETFVSA--DDLRINLWNLEISDQCF--NIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYSSSRG  290 (409)
Q Consensus       220 ~v~~l~~~----~~~~~l~~~--~d~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~s~dg  290 (409)
                      ....++++    |+++.++.+  .++.|.+||....+...  ..+    ..+..+. ..+..++++++| +++++...++
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~  247 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW----GHIPGTHEGGADGMDFDEDN-NLLVANWGSS  247 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE----EECCCCSSCEEEEEEEBTTC-CEEEEEETTT
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE----EECCCCCCCCCCceEECCCC-CEEEEEcCCC
Confidence            35678899    998766544  68899999976223211  111    0123333 567889999999 8888887888


Q ss_pred             eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccC
Q 015290          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM  357 (409)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~  357 (409)
                      .|.+||..+++..    ..+..             +...+.+++|+|+|++|..++ . +.|..|++..
T Consensus       248 ~i~~~d~~~g~~~----~~~~~-------------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          248 HIEVFGPDGGQPK----MRIRC-------------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECTTCBSCS----EEEEC-------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCCcEe----EEEeC-------------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999998755431    22222             124688999999999666554 3 7999999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.24  E-value=1.3e-08  Score=89.40  Aligned_cols=288  Identities=9%  Similarity=0.015  Sum_probs=162.3

Q ss_pred             EEEECCCCCEEEEEec-----CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           37 AIEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        37 ~v~~~~~~~~la~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .....|+++.+++...     ++.|.++|..+.+.                           +..+....          
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~----------   79 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF----------   79 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS----------
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC----------
Confidence            3456789998888765     67999999987763                           34443322          


Q ss_pred             eccceEEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC
Q 015290          112 IEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (409)
                        .+ . +.+  +|||+.++++.          .++.|.+||..+.+............      ............+++
T Consensus        80 --~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r------~~~g~~P~~~a~spD  147 (386)
T 3sjl_D           80 --LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR------FLVGTYPWMTSLTPD  147 (386)
T ss_dssp             --SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC------CCBSCCGGGEEECTT
T ss_pred             --CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc------cccCCCCceEEEcCC
Confidence              33 3 888  89999988775          36789999999988766543211000      000112333445566


Q ss_pred             CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      +.+++......++.|.++|+.+..   .+..+ ... + . ...+....+.+++. .||.+.+.++...+...... .+ 
T Consensus       148 Gk~lyVan~~~~~~VsVID~~t~~---vv~tI-~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~-  218 (386)
T 3sjl_D          148 GKTLLFYQFSPAPAVGVVDLEGKA---FKRML-DVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TE-  218 (386)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTE---EEEEE-ECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CC-
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCc---EEEEE-ECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cc-
Confidence            677776655456789999998743   33322 110 1 0 11222223444444 77777777776323332211 00 


Q ss_pred             CcCcCccCceE-EEEEe-CCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290          261 SNMDDLTEVIT-SAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (409)
Q Consensus       261 ~~~~~~~~~v~-~~~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  338 (409)
                       .+..-...+. ...|. ++| ++++ .+.+|.+.+.|+.+.....  ...+..-.... ...  .-.......++++++
T Consensus       219 -~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~-~~~--g~~p~g~q~~a~~~~  290 (386)
T 3sjl_D          219 -VFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKF--LPAVEALTEAE-RAD--GWRPGGWQQVAYHRA  290 (386)
T ss_dssp             -CCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEE--CCCEESSCHHH-HHT--TEEECSSSCEEEETT
T ss_pred             -eeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCccee--ecceecccccc-ccc--cccCCCcceeeECCC
Confidence             0111112221 23665 666 5444 5668999999997654210  11111000000 000  000123456788999


Q ss_pred             CCEEEEee-----------cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEc-ccC
Q 015290          339 GQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYR  405 (409)
Q Consensus       339 g~~l~sg~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~-s~d  405 (409)
                      ++.+....           .+.|.+.|+.+ ++.+..+......                ++++++||++ +|+++ ..+
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTT
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCC
Confidence            98777642           15799999987 8888888765443                4899999997 66554 335


Q ss_pred             CC
Q 015290          406 RD  407 (409)
Q Consensus       406 g~  407 (409)
                      ++
T Consensus       354 ~~  355 (386)
T 3sjl_D          354 KT  355 (386)
T ss_dssp             TE
T ss_pred             Ce
Confidence            54

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.18  E-value=2.2e-08  Score=89.65  Aligned_cols=253  Identities=11%  Similarity=0.076  Sum_probs=139.1

Q ss_pred             CCCCEEEEEecC-----CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           42 KTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        42 ~~~~~la~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      ++++.+++....     +.|.++|..+.+.                           +..+..-.            .+ 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v---------------------------v~~I~vG~------------~P-  121 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI---------------------------LGMTDGGF------------LP-  121 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEE---------------------------EEEEEECS------------SC-
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEE---------------------------EEEEECCC------------CC-
Confidence            477766666542     6999999988763                           33333222            34 


Q ss_pred             EEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccC-CCcccccccccccccCceeccCCCCCcee
Q 015290          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                       .+.+  +||++.++++.          .++.|.++|..+.+........ ....       ...........++++.++
T Consensus       122 -gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~-------~~g~~P~~~~~spDGk~l  191 (426)
T 3c75_H          122 -HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF-------LVGTYQWMNALTPDNKNL  191 (426)
T ss_dssp             -EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC-------CBSCCGGGSEECTTSSEE
T ss_pred             -ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc-------ccCCCcceEEEcCCCCEE
Confidence             7899  89999988875          4678999999998876654422 0000       000111223334455555


Q ss_pred             ecccccccceeEEEecCCcccceeeeee------ccc--------cc----------cce----------------eEEE
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVY------PHA--------HD----------FNI----------------NSIS  225 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~--------~~----------~~v----------------~~l~  225 (409)
                      +......++.|.+.|+.+......+..-      ..+        ..          ..+                ..+.
T Consensus       192 yV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~  271 (426)
T 3c75_H          192 LFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA  271 (426)
T ss_dssp             EEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred             EEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence            5544333456666666653322111110      000        00          000                0123


Q ss_pred             eCCCCCeEEEe-cCCeEEEEEccCCCce--eeeeecCCCcC---cCccCceEEEEEeCCCCCEEEEEeC----------C
Q 015290          226 NNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNM---DDLTEVITSAEFHPIYCNLLAYSSS----------R  289 (409)
Q Consensus       226 ~~~~~~~l~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~s~----------d  289 (409)
                      +.+++..++.. ..+.+.+.|+. ....  +..+.+.....   .........++++|++ ..++....          +
T Consensus       272 ~~~dg~~~~~~s~~g~V~ViD~~-~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          272 FSLRSGRLVWPTYTGKIFQADLT-AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             ECTTTCEEEEEBTTSEEEEEEEC-SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCE
T ss_pred             ecCCCCEEEEEeCCCcEEEEecc-CCceEEeeeeeeccccccccccccCCceeeEEcCCC-CEEEEEecccccccccCCC
Confidence            34444444443 45566666664 2111  01110000000   0011112236899998 55444421          3


Q ss_pred             CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEE
Q 015290          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~  365 (409)
                      +.|.++|..+.+.    +..+..              ......++|+|||+ ++++..  ++.|.++|+.+ .+.+..+
T Consensus       350 ~~VsVID~~T~kv----v~~I~v--------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI  409 (426)
T 3c75_H          350 RFVVVLNAETGER----INKIEL--------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV  409 (426)
T ss_dssp             EEEEEEETTTCCE----EEEEEE--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred             CEEEEEECCCCeE----EEEEEC--------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence            5799999998764    233433              23578999999999 888776  39999999987 8888887

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=1.3e-07  Score=81.31  Aligned_cols=237  Identities=8%  Similarity=-0.011  Sum_probs=144.0

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...+.+++++++|+++++...++.|..||.. ++.                          ....+....          
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~--------------------------~~~~~~~~~----------  103 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF--------------------------TEYPLPQPD----------  103 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--------------------------EEEECSSTT----------
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe--------------------------EEecCCCCC----------
Confidence            3678999999999887776667889999977 331                          001111122          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ..+.++++  ++++.++++...++.|..++.. ++...... ..           ...........+.+.+.....  
T Consensus       104 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-~~-----------~~~~~~~i~~d~~g~l~v~~~--  164 (300)
T 2qc5_A          104 --SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL-PN-----------KGSYPAFITLGSDNALWFTEN--  164 (300)
T ss_dssp             --CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEEC-SS-----------TTCCEEEEEECTTSSEEEEET--
T ss_pred             --CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEccC-CC-----------CCCCceeEEECCCCCEEEEec--
Confidence              46889999  6888877777778899999987 54432211 00           001111122222222222111  


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                      .++.|..++...    +............+..++++++++.+++. ..+.|..|+..  +......      .......+
T Consensus       165 ~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~~~------~~~~~~~~  232 (300)
T 2qc5_A          165 QNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT--GEISEYD------IPTPNARP  232 (300)
T ss_dssp             TTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEEEE------CSSTTCCE
T ss_pred             CCCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC--CcEEEEE------CCCCCCCc
Confidence            134677776632    11111112344568899999999877777 77889999984  3332221      22344568


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeE
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v  350 (409)
                      .+++++++| +++++...++.|..||.. +..     ..+..           ......+.+++++++|++.++.. +.|
T Consensus       233 ~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~-----~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~-~~i  293 (300)
T 2qc5_A          233 HAITAGKNS-EIWFTEWGANQIGRITND-NTI-----QEYQL-----------QTENAEPHGITFGKDGSVWFALK-CKI  293 (300)
T ss_dssp             EEEEECSTT-CEEEEETTTTEEEEECTT-SCE-----EEEEC-----------CSTTCCCCCEEECTTSCEEEECS-SEE
T ss_pred             eEEEECCCC-CEEEeccCCCeEEEECCC-CcE-----EEEEC-----------CccCCccceeEeCCCCCEEEEcc-Cce
Confidence            899999999 877777677899999983 332     11211           00123578899999998776665 366


Q ss_pred             EEEEc
Q 015290          351 KLWDI  355 (409)
Q Consensus       351 ~iwd~  355 (409)
                      ..+|.
T Consensus       294 ~~~~p  298 (300)
T 2qc5_A          294 GKLNL  298 (300)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            66664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.12  E-value=3e-08  Score=85.39  Aligned_cols=104  Identities=10%  Similarity=0.064  Sum_probs=71.5

Q ss_pred             ceeEEEeCCCCCeEEEe--cCCeEEEEEcc-CCCcee--eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290          220 NINSISNNSDCETFVSA--DDLRINLWNLE-ISDQCF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~-~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i  294 (409)
                      ..+.++|+|+++.|+.+  .++.|.+|++. ..+...  ..+    ..+..+...+..++++++| ++.++...++.|..
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~----~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~  224 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV----YKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIR  224 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE----EECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEE
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE----EECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEE
Confidence            45789999999877655  68899999974 233321  111    0123344567899999999 88888888889999


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceeeeEec-cCCCEEEEe
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR  345 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~sg  345 (409)
                      ||..+++..    ..+..             +...+++++|. |+++.|...
T Consensus       225 ~d~~tG~~~----~~i~~-------------p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          225 LDPVTGKRL----QTVKL-------------PVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             ECTTTCCEE----EEEEC-------------SSSBEEEEEEESGGGCEEEEE
T ss_pred             EcCCCceEE----EEEEC-------------CCCCceEEEEeCCCCCEEEEE
Confidence            999876542    22322             12468999998 888766544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.03  E-value=9e-08  Score=86.24  Aligned_cols=215  Identities=11%  Similarity=0.101  Sum_probs=125.5

Q ss_pred             EEECCCCCEEEEEecCC--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCccccccccceecc
Q 015290           38 IEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEE  114 (409)
Q Consensus        38 v~~~~~~~~la~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~  114 (409)
                      ++|+|+++.|+++..++  .|.+|+..++...                        +.+..+.. ..            .
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~------------------------~~~g~~~~~~~------------~  219 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP------------------------TRIGQLGSTFS------------G  219 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE------------------------EEEEECCTTSC------------S
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCcee------------------------EEeeeccchhc------------C
Confidence            89999999988888766  7888887654320                        01111111 22            4


Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      .+.++++  +|++..|+.+..++.|+.||..++..........                                     
T Consensus       220 ~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~-------------------------------------  260 (409)
T 3hrp_A          220 KIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL-------------------------------------  260 (409)
T ss_dssp             CCCBCEE--CTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC-------------------------------------
T ss_pred             CcEEEEE--eCCCCeEEEEECCCcEEEEECCCCCEEEEecccc-------------------------------------
Confidence            6778999  6744566667778899999988765332211000                                     


Q ss_pred             eeEEEecCCcccceeeeeecccccc--ceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecC-CCcC------
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK-PSNM------  263 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-~~~~------  263 (409)
                                          .+...  +...++|+|+ +.++++- .++.|+.|+..  +......... ....      
T Consensus       261 --------------------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g~~~~~~g~~~~~g~~dg~~~  318 (409)
T 3hrp_A          261 --------------------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--GECEWFCGSATQKTVQDGLRE  318 (409)
T ss_dssp             --------------------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECTTCCSCBCEEGG
T ss_pred             --------------------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--CCEEEEEeCCCCCCcCCCccc
Confidence                                11111  1138999996 4444455 78899999877  3222221110 0000      


Q ss_pred             cCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCc--ccccccccceeeeEeccCCC
Q 015290          264 DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~g~  340 (409)
                      ...-.....++++|+| +++++-+ .++.|+.||+.++..     ..+..+.......  ......-.....++++++|.
T Consensus       319 ~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~  392 (409)
T 3hrp_A          319 EALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG  392 (409)
T ss_dssp             GCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred             ccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence            0012347899999999 8888877 889999999777653     2222210000000  00000123578899999987


Q ss_pred             EEEEeec-CeEEEEEc
Q 015290          341 HLLSRDY-MNLKLWDI  355 (409)
Q Consensus       341 ~l~sg~~-~~v~iwd~  355 (409)
                      ++++-.. +.|+.+++
T Consensus       393 lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          393 YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEESTTCEEEEEEE
T ss_pred             EEEEECCCCeEEEEEe
Confidence            6666654 88887765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=7.7e-10  Score=98.41  Aligned_cols=188  Identities=9%  Similarity=-0.009  Sum_probs=95.2

Q ss_pred             CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEE
Q 015290           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (409)
Q Consensus        43 ~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~  122 (409)
                      ++..+++++.||.|..||..+++.                           +-.+.. .             .+.+..+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~---------------------------~W~~~~-~-------------~~~s~p~-   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI---------------------------KWTLKE-D-------------PVLQVPT-   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE---------------------------EEEEEC-C-------------CSCCCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE---------------------------EEEecC-C-------------Cceecce-
Confidence            577889999999999999988874                           222222 1             2222333 


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecC
Q 015290          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (409)
Q Consensus       123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (409)
                       ..++..+++++.|+.|+.||..+++...........                                           
T Consensus        46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-------------------------------------------   81 (369)
T 2hz6_A           46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-------------------------------------------   81 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-------------------------------------------
T ss_pred             -EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-------------------------------------------
Confidence             256667777789999999999887654432210000                                           


Q ss_pred             CcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCC
Q 015290          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (409)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  281 (409)
                                  .....+    .+. .+..++++ .++.++.||.. +++.+..+       ..+.    ...++|++ .
T Consensus        82 ------------~~~~sp----~~~-~~~~v~~g~~dg~v~a~D~~-tG~~~w~~-------~~~~----~~~~~p~~-~  131 (369)
T 2hz6_A           82 ------------LVQASP----CRS-SDGILYMGKKQDIWYVIDLL-TGEKQQTL-------SSAF----ADSLSPST-S  131 (369)
T ss_dssp             ------------HHTTCS----CC------CCCCEEEEEEEEECCC----------------------------------
T ss_pred             ------------ccccCc----eEe-cCCEEEEEeCCCEEEEEECC-CCcEEEEe-------cCCC----cccccccC-C
Confidence                        000011    111 23456667 88999999998 66655442       2221    23456777 8


Q ss_pred             EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC---CEEEEee-cCeEEEEEccC
Q 015290          282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSRD-YMNLKLWDIRM  357 (409)
Q Consensus       282 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~sg~-~~~v~iwd~~~  357 (409)
                      .+++++.|+.|+.||.++++..    ..+..               ......+++++.   ..+++++ ++.|+.||.++
T Consensus       132 ~v~~~~~dg~v~a~d~~tG~~~----W~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          132 LLYLGRTEYTITMYDTKTRELR----WNATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             -EEEEEEEEEEECCCSSSSSCC----CEEEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             EEEEEecCCEEEEEECCCCCEE----EeEec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            8888999999999999988742    11111               011223344431   3444454 59999999986


Q ss_pred             CCcceEEEe
Q 015290          358 DSTPVATFK  366 (409)
Q Consensus       358 ~~~~~~~~~  366 (409)
                       ++.+-.+.
T Consensus       193 -G~~~W~~~  200 (369)
T 2hz6_A          193 -GDVLWIQN  200 (369)
T ss_dssp             -CCEEEEEE
T ss_pred             -CcEEEEec
Confidence             77766665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.97  E-value=9.3e-08  Score=84.13  Aligned_cols=79  Identities=9%  Similarity=-0.010  Sum_probs=56.8

Q ss_pred             EEEeCCCCCEEEEE-e---C-----CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE-E
Q 015290          273 AEFHPIYCNLLAYS-S---S-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L  342 (409)
Q Consensus       273 ~~~~p~~~~~l~s~-s---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l  342 (409)
                      +.++|++ +.++.+ .   .     ++.+.++|+.+.+.    +..+..              ......++|+|||++ +
T Consensus       269 v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v----v~~i~v--------------g~~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          269 VAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQT----SGPISN--------------GHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             EEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCE----EECCEE--------------EEEECEEEECCSSSCEE
T ss_pred             eEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeE----EEEEEC--------------CCCcceEEECCCCCEEE
Confidence            6899999 655544 3   2     23566999998764    233333              235789999999984 4


Q ss_pred             EEee--cCeEEEEEccCCCcceEEEecccCc
Q 015290          343 LSRD--YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       343 ~sg~--~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      ++..  ++.|.++|+.+ .+.+..+.....+
T Consensus       330 va~~~~~~~VsVID~~t-~kvv~~I~vg~~P  359 (368)
T 1mda_H          330 YANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             EEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             EEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence            4444  49999999987 8888888877665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.97  E-value=6.5e-07  Score=78.08  Aligned_cols=104  Identities=13%  Similarity=-0.022  Sum_probs=67.5

Q ss_pred             ceeEEEeCCCCCeEEEe--cCCeEEEEEcc-CCC-cee--eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          220 NINSISNNSDCETFVSA--DDLRINLWNLE-ISD-QCF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~-~~~-~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      ....++|+|+++.++.+  .++.|.+|++. ..+ ...  ..+.    .+......+..++++++| ++.++...++.|.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~----~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~  254 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI----DSTGIKGGMDGSVCDAEG-HIWNARWGEGAVD  254 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE----ECTTSSSEEEEEEECTTS-CEEEEEETTTEEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE----ECCCCCCCCCeeEECCCC-CEEEEEeCCCEEE
Confidence            35689999999877655  67899999985 123 211  1110    022233557889999999 8877776778899


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEec-cCCCEEEEee
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD  346 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~sg~  346 (409)
                      +||.. ++.    ...+..             +...+.+++|+ ++++.|+.++
T Consensus       255 ~~d~~-g~~----~~~i~~-------------~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          255 RYDTD-GNH----IARYEV-------------PGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EECTT-CCE----EEEEEC-------------SCSBEEEEEEESTTSCEEEEEE
T ss_pred             EECCC-CCE----EEEEEC-------------CCCCcEEEEEecCCCCEEEEEe
Confidence            99984 332    122222             12368999998 8887665543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.93  E-value=2.2e-07  Score=80.22  Aligned_cols=108  Identities=12%  Similarity=-0.002  Sum_probs=67.0

Q ss_pred             ceeEEEeCCCCCeEEEe-cC------CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          220 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      ..+.++|+|+++.|+.+ ..      +.|..|++. ... +.....-   ..........++++++| ++.++ ..+ .|
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~-~~~-l~~~~~~---~~~~~~~pdgi~~d~~G-~lwv~-~~~-gv  260 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR-DGA-LHDRRHF---ASVPDGLPDGFCVDRGG-WLWSS-SGT-GV  260 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE-TTE-EEEEEEE---ECCSSSCCCSEEECTTS-CEEEC-CSS-EE
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec-CCC-ccCCeEE---EECCCCCCCeEEECCCC-CEEEe-cCC-cE
Confidence            35679999999988776 54      789999987 332 2110000   11122345678999999 75544 344 49


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  354 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd  354 (409)
                      .+||.....     ...+..              ...+..++|+|+++.|..++.+.+..++
T Consensus       261 ~~~~~~g~~-----~~~~~~--------------~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          261 CVFDSDGQL-----LGHIPT--------------PGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             EEECTTSCE-----EEEEEC--------------SSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             EEECCCCCE-----EEEEEC--------------CCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            999985432     122322              1247889999999888877665554444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=5.1e-07  Score=80.81  Aligned_cols=119  Identities=6%  Similarity=-0.066  Sum_probs=76.5

Q ss_pred             EecCCCCEEEEEeC-C----CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc------
Q 015290          122 CAAPNGSMFILSTN-D----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW------  190 (409)
Q Consensus       122 ~~s~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  190 (409)
                      .|.++++.++++.. +    +.|.++|..+++.........              .. ....++++..++.+..      
T Consensus        79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--------------~P-gia~SpDgk~lyVan~~~~~~~  143 (426)
T 3c75_H           79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--------------LP-HPVAAEDGSFFAQASTVFERIA  143 (426)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--------------SC-EEEECTTSSCEEEEEEEEEETT
T ss_pred             cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--------------CC-ceEECCCCCEEEEEeccccccc
Confidence            44577777776644 2    699999999998876654321              12 3344555665555543      


Q ss_pred             --cccceeEEEecCCcccceeeeeecc-c----cccceeEEEeCCCCCeEEEe-c--CCeEEEEEccCCCceeeeeec
Q 015290          191 --TENMATKIANVGNSVHARCQKVYPH-A----HDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       191 --~~~~~i~~~~~~~~~~~~~~~~~~~-~----~~~~v~~l~~~~~~~~l~~~-~--d~~i~lwd~~~~~~~~~~~~~  258 (409)
                        ..++.|.++|..+......+..  . .    .......++++|||++++++ .  ++.|.+.|+. +.+.+..+.+
T Consensus       144 ~G~~~~~VsviD~~t~~vv~~I~v--~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v  218 (426)
T 3c75_H          144 RGKRTDYVEVFDPVTFLPIADIEL--PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDV  218 (426)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEE--TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEEC
T ss_pred             cCCCCCEEEEEECCCCcEEEEEEC--CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC-CCeEEEEEEc
Confidence              1356899999987443332221  1 0    11234578999999999986 3  5789999999 6666666543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.88  E-value=3.2e-07  Score=80.68  Aligned_cols=171  Identities=8%  Similarity=0.069  Sum_probs=100.0

Q ss_pred             ccccceeEEEeCCCCCeEEEe-c-----CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe--
Q 015290          216 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--  287 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~-~-----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s--  287 (409)
                      .+...+..++++++++++++- .     +..|.+||+. +++.+..+.+... ...+...+..++++|++...+++..  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-tg~~~~~~~~~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-NNQLSRVIYLPPP-ITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-TTEEEEEEECCTT-TSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-CCeEEEEEECChh-hcccccccceEEEecCCCEEEEEcCcc
Confidence            355678899999998766654 3     5899999998 6666666544311 1223456789999986525556655  


Q ss_pred             -CCCeEEEEeCCCcccccccccccccccc-ccCCc-ccccc--------------cccceeeeEeccCCCEEEEeec--C
Q 015290          288 -SRGFVRLVDMRQSALCDHSARILRDAAE-SHGSK-SFFTE--------------IIASISDIKFANDGQHLLSRDY--M  348 (409)
Q Consensus       288 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--------------~~~~i~~~~~s~~g~~l~sg~~--~  348 (409)
                       .++.|.+||+.+++..    +.+..|.. .+... -...+              ....+..++|+|||+.|+.+..  .
T Consensus       142 ~~~~~i~v~d~~~g~~~----r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAA----RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             GGGCEEEEEETTTCCEE----EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             CCCCeEEEEECCCCCEE----EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence             6789999999876531    22221100 00000 00000              0123678999999998887753  5


Q ss_pred             eEEEEEccC--CCc--------ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRM--DST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|..++...  .+.        .+..+ ++....               ..++++++|.++++...++.|
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~p---------------dgia~d~~G~l~va~~~~~~V  271 (343)
T 2qe8_A          218 SMYRIKSADLSNLQLTDAELGSKIERY-SEKPIC---------------DGISIDKDHNIYVGDLAHSAI  271 (343)
T ss_dssp             EEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSC---------------SCEEECTTCCEEEEEGGGTEE
T ss_pred             eEEEEEHHHhcCCCCChhhhhcceEec-ccCCCC---------------ceEEECCCCCEEEEccCCCeE
Confidence            555555321  010        01111 111111               378999999888877766554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=7.8e-06  Score=68.93  Aligned_cols=220  Identities=12%  Similarity=0.116  Sum_probs=131.0

Q ss_pred             CcEEEEEECCCCCEEEEE-ecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           33 DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ..+..++|++++..|..+ ..++.|..++..+...                           ...+...-          
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------------------~~~~~~~~----------   78 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------------------TTIIRQDL----------   78 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------EEEECTTC----------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------EEEEECCC----------
Confidence            356799999976655554 4568999999876542                           11111111          


Q ss_pred             eccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                        .....+++  ++++..|+.+ ...+.|.++++.........                                     
T Consensus        79 --~~p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-------------------------------------  117 (267)
T 1npe_A           79 --GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-------------------------------------  117 (267)
T ss_dssp             --CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------------------------
T ss_pred             --CCccEEEE--EecCCeEEEEECCCCEEEEEEcCCCCEEEEE-------------------------------------
Confidence              35788999  5765555544 55678888887643221110                                     


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--c--CCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                              .........++++|++..|+.+  .  .+.|..+++.  +.....+      ....
T Consensus       118 ------------------------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~------~~~~  165 (267)
T 1npe_A          118 ------------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRIL------AQDN  165 (267)
T ss_dssp             ------------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEE------ECTT
T ss_pred             ------------------------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEE------EECC
Confidence                                    1111345789999976665554  3  4688888876  3222221      1112


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ......++++|++..++++-...+.|.++|.......    .....              ......++..  +..|..+.
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~  225 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTD  225 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEE
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEE
Confidence            2457899999987245555566789999998754321    11111              1123455554  45555553


Q ss_pred             -c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          347 -Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       347 -~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                       . +.|..+|..+ ++.+..+.......+              ..+++.|++.
T Consensus       226 ~~~~~v~~~d~~~-g~~~~~i~~g~~~~p--------------~gi~~~~~~~  263 (267)
T 1npe_A          226 WKTNSVIAMDLAI-SKEMDTFHPHKQTRL--------------YGITIALSQC  263 (267)
T ss_dssp             TTTTEEEEEETTT-TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred             CCCCeEEEEeCCC-CCceEEEcccccccc--------------ceeeecCccC
Confidence             4 8999999875 787888764432111              4788888875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=2.5e-07  Score=85.04  Aligned_cols=110  Identities=10%  Similarity=0.030  Sum_probs=67.9

Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccc------cc--ccccccccccccCCcccccccccceeeeEeccCCC
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC------DH--SARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                      ...++.++|||...++++..+.+|.++|+.+.+..      ..  .......              ......++|+|+| 
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v--------------G~gP~h~aF~~dG-  342 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL--------------GLGPLHTAFDGRG-  342 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC--------------CSCEEEEEECTTS-
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC--------------CCCcceEEECCCC-
Confidence            45689999999334445557889999999864210      00  0011111              2356789999999 


Q ss_pred             EEEEee--cCeEEEEEccCC---------CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          341 HLLSRD--YMNLKLWDIRMD---------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       341 ~l~sg~--~~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      ++.+..  +++|.+||+...         .+.+..+..|-.+.- ..      ..   ....++|||++|+++.
T Consensus       343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-~~------~~---~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-LK------TV---MGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-EE------ET---TTTSTTCCSSEEEEEE
T ss_pred             eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-ce------ec---cceEeCCCCCEEEEcC
Confidence            666654  499999998741         345666665543210 00      00   1456789999998764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.82  E-value=1.9e-07  Score=90.41  Aligned_cols=186  Identities=13%  Similarity=0.086  Sum_probs=111.7

Q ss_pred             cceEEEEEEecCCCCEEEEEe-----CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          114 EKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ..+..++|  ||||++|+.+.     .+..|++||+.+++......                                  
T Consensus       129 ~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~----------------------------------  172 (693)
T 3iuj_A          129 TALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL----------------------------------  172 (693)
T ss_dssp             CEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE----------------------------------
T ss_pred             EEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc----------------------------------
Confidence            46888899  89999888542     22578999998876432200                                  


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCC-------------eEEEEEccCCCce-e
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-------------RINLWNLEISDQC-F  253 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~-------------~i~lwd~~~~~~~-~  253 (409)
                                                ..  .....++|+ |++.|+.+ .+.             .|++|++.+.... .
T Consensus       173 --------------------------~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~  223 (693)
T 3iuj_A          173 --------------------------KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR  223 (693)
T ss_dssp             --------------------------EE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE
T ss_pred             --------------------------CC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce
Confidence                                      00  112456899 99888877 553             4899998733221 2


Q ss_pred             eeeecCCCcCcC-ccCceEEEEEeCCCCCEEEEEe----CCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          254 NIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       254 ~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      .++     .... |...+.++.|+|+| ++|+...    .++.|.++|+.++...   ...+..             +..
T Consensus       224 ~v~-----~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~~---~~~l~~-------------~~~  281 (693)
T 3iuj_A          224 LVF-----GAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENAP---LLTVQG-------------DLD  281 (693)
T ss_dssp             EEE-----SCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTCC---CEEEEC-------------SSS
T ss_pred             EEE-----ecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCCc---eEEEeC-------------CCC
Confidence            221     1233 45567899999999 7665433    2358999998775321   122222             122


Q ss_pred             ceeeeEeccCCCEEE-Eee-c---CeEEEEEccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          329 SISDIKFANDGQHLL-SRD-Y---MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~-sg~-~---~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      ..... |+++|..|+ ... +   +.|..+|+.. +..  ...+..+...+                 +.|+++++.|+.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~-----------------~~~s~~g~~lv~  342 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-PGPAHWRDLIPERQQV-----------------LTVHSGSGYLFA  342 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-CCGGGCEEEECCCSSC-----------------EEEEEETTEEEE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-CCccccEEEecCCCCE-----------------EEEEEECCEEEE
Confidence            23333 667776555 332 2   6799999875 333  34555555432                 288888887776


Q ss_pred             cccC
Q 015290          402 GSYR  405 (409)
Q Consensus       402 ~s~d  405 (409)
                      ...+
T Consensus       343 ~~~~  346 (693)
T 3iuj_A          343 EYMV  346 (693)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.81  E-value=9e-06  Score=70.10  Aligned_cols=236  Identities=11%  Similarity=0.121  Sum_probs=129.1

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      .....++|+++|+++++-..++.|..||..+...                            ..+. -.           
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~-----------   71 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE-----------   71 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence            4577899999999777766788999998765321                            1111 11           


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCC-C-eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                       ..+..+++  +++|+++++.... + .|..++..+++.......                                   
T Consensus        72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-----------------------------------  113 (306)
T 2p4o_A           72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-----------------------------------  113 (306)
T ss_dssp             -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred             -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-----------------------------------
Confidence             46788999  7889866655433 2 355566666654332110                                   


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc-eeeeeec--CCCcCcCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM--KPSNMDDL  266 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~-~~~~~~~--~~~~~~~~  266 (409)
                                               ........++..+++..+++- .++.|..+|.. .+. .+.....  ........
T Consensus       114 -------------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~-~~~~~v~~~~~~~~~~~~~~~  167 (306)
T 2p4o_A          114 -------------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV-QPSGSIWLEHPMLARSNSESV  167 (306)
T ss_dssp             -------------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETT-TTEEEEEEECGGGSCSSTTCC
T ss_pred             -------------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCC-CCcEeEEEECCccccccccCC
Confidence                                     000112233444444444444 57888888876 221 1111000  00001111


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC-ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      -.....+  +|++..++++-...+.|..||+.. ++..  ....+..              ......++++++|++.++.
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEEC
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEe
Confidence            1234555  788723445556678999999875 3211  0111111              1245778999999876665


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc---CCCCeEEEcccC
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYR  405 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~l~s~s~d  405 (409)
                      .. +.|.++|..  ++...........             ...++++|.   ||++.|..++..
T Consensus       230 ~~~~~V~~~~~~--G~~~~~~~~~~~~-------------~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          230 HIYNSVVRIAPD--RSTTIIAQAEQGV-------------IGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             BTTCCEEEECTT--CCEEEEECGGGTC-------------TTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCeEEEECCC--CCEEEEeeccccc-------------CCceEEEEecccCCCCEEEEECCC
Confidence            54 899999964  5543221111110             012689999   898777655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.78  E-value=2.5e-06  Score=81.97  Aligned_cols=140  Identities=9%  Similarity=0.041  Sum_probs=90.0

Q ss_pred             eCCCC---CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC-----------------------------cCccCceEE
Q 015290          226 NNSDC---ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-----------------------------DDLTEVITS  272 (409)
Q Consensus       226 ~~~~~---~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~v~~  272 (409)
                      ...+|   +.++.+ .+|.++++|.. +++.+..+...+...                             .+... -..
T Consensus       320 ~~~dG~~~~~l~~~~~~G~l~~lD~~-tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~-w~~  397 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPKNGFFFVLDRT-NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN-WHP  397 (677)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-SSC
T ss_pred             cccCCcEeeEEEEECCCCEEEEEECC-CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-CCC
Confidence            33466   577788 99999999998 677665544322110                             00000 125


Q ss_pred             EEEeCCCCCEEEEEeC-------------------------------------------CCeEEEEeCCCcccccccccc
Q 015290          273 AEFHPIYCNLLAYSSS-------------------------------------------RGFVRLVDMRQSALCDHSARI  309 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~  309 (409)
                      ++++|++ .++++...                                           .|.|..||+.+++.      .
T Consensus       398 ~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~------~  470 (677)
T 1kb0_A          398 MSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA------A  470 (677)
T ss_dssp             CEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE------E
T ss_pred             ceEcCCC-CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE------E
Confidence            7889987 77766532                                           27799999988864      2


Q ss_pred             ccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCcccee
Q 015290          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (409)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (409)
                      |.. .           +..++....+..++.+++.++ ++.+++||.++ ++.+..+........              .
T Consensus       471 W~~-~-----------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~~~~--------------~  523 (677)
T 1kb0_A          471 WSV-E-----------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVA--------------A  523 (677)
T ss_dssp             EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------C
T ss_pred             eec-C-----------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCCCccc--------------C
Confidence            222 0           012345556777788888886 49999999987 899988875543321              2


Q ss_pred             eEEEcCCCCeEEE
Q 015290          389 ECSVSGDGLHFAT  401 (409)
Q Consensus       389 ~~~~spdg~~l~s  401 (409)
                      -+.|.++|+.++.
T Consensus       524 p~~y~~~G~~~v~  536 (677)
T 1kb0_A          524 PSTYMVDGRQYVS  536 (677)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEEeCCEEEEE
Confidence            4677788875443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=6.1e-06  Score=68.63  Aligned_cols=209  Identities=7%  Similarity=-0.021  Sum_probs=125.8

Q ss_pred             cEEEEEECCCCCEEEEEec--CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec--CCCcccccccc
Q 015290           34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKS  109 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~  109 (409)
                      ....+.|++|+.++++.+.  ++.|.++|..+++.                           +..+.  .+.        
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------------------------~~~i~l~~~~--------   66 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------------------------ENIHKMDDSY--------   66 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------------------------EEEEECCTTC--------
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------------------------EEEEecCCCc--------
Confidence            4678999998765555443  57999999998874                           22221  221        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                           ....+++  . .++..++.-.++.+.++|..+.+.......                                  
T Consensus        67 -----fgeGi~~--~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~----------------------------------  104 (266)
T 2iwa_A           67 -----FGEGLTL--L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH----------------------------------  104 (266)
T ss_dssp             -----CEEEEEE--E-TTEEEEEETTCSEEEEEETTTTEEEEEEEC----------------------------------
T ss_pred             -----ceEEEEE--e-CCEEEEEEecCCEEEEEECCCCcEEEEEEC----------------------------------
Confidence                 2234555  2 233444556778999999988776554321                                  


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                                                + ...  ...+++|++.++.+ .++.|.++|.. +.+....+.+...  ...-.
T Consensus       105 --------------------------g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~--~~p~~  152 (266)
T 2iwa_A          105 --------------------------Q-MKD--GWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKYN--GHRVI  152 (266)
T ss_dssp             --------------------------C-SSS--CCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECC
T ss_pred             --------------------------C-CCC--eEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECCC--Ccccc
Confidence                                      1 011  12345578888888 88899999998 5555555432210  01112


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE-eec
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s-g~~  347 (409)
                      .++.+.|. +| .+++....++.|.+.|..+++..    ..+......+.....-..-....+.++|+|+++.++. +..
T Consensus       153 ~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          153 RLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             CEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             cceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE----EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence            46788888 66 66666667889999999998752    2222100000000000000135689999999876655 444


Q ss_pred             -CeEEEEEccC
Q 015290          348 -MNLKLWDIRM  357 (409)
Q Consensus       348 -~~v~iwd~~~  357 (409)
                       +.|...++..
T Consensus       227 ~~~v~~i~l~~  237 (266)
T 2iwa_A          227 WPKLFEIKLHL  237 (266)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEec
Confidence             8888888864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.76  E-value=5.7e-07  Score=82.67  Aligned_cols=141  Identities=11%  Similarity=0.031  Sum_probs=88.3

Q ss_pred             eeEEEecCCccccee-eeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCc-----------eeeeeecCC
Q 015290          195 ATKIANVGNSVHARC-QKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ-----------CFNIVDMKP  260 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~-----------~~~~~~~~~  260 (409)
                      .|.+.|..+.. ... +...  .-.....++.++|||++++++  .+.+|.++|+.....           ....     
T Consensus       255 ~V~VID~~~~~-~~~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-----  326 (595)
T 1fwx_A          255 GVKVVDGRKEA-SSLFTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-----  326 (595)
T ss_dssp             TEEEEECSGGG-CCSSEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-----
T ss_pred             cEEEEeCcccC-CceeEEEE--ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-----
Confidence            47777776521 112 1221  122345789999999988876  789999999983210           1111     


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc------ccccccccccccccccCCccccc-ccccceeee
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA------LCDHSARILRDAAESHGSKSFFT-EIIASISDI  333 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~  333 (409)
                        . .-......++|+|+| ...++.-.|+.|.+||+....      .....+..+..|         +. +|...-..+
T Consensus       327 --v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~---------yqpGh~~~~~g~  393 (595)
T 1fwx_A          327 --P-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH---------YQPGHLKTVMGE  393 (595)
T ss_dssp             --C-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS---------SCEEEEEETTTT
T ss_pred             --c-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc---------cccccceeccce
Confidence              1 122457899999999 877788889999999987621      001111222221         11 344444566


Q ss_pred             EeccCCCEEEEeec---CeE-----------EEEEcc
Q 015290          334 KFANDGQHLLSRDY---MNL-----------KLWDIR  356 (409)
Q Consensus       334 ~~s~~g~~l~sg~~---~~v-----------~iwd~~  356 (409)
                      +++|||++|++...   .++           .++|+.
T Consensus       394 t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis  430 (595)
T 1fwx_A          394 TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS  430 (595)
T ss_dssp             STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred             EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence            88999999998753   444           889995

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.72  E-value=8.6e-07  Score=77.99  Aligned_cols=70  Identities=4%  Similarity=-0.136  Sum_probs=52.8

Q ss_pred             EEeCCCCCeEEEe-c-C--------CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeE
Q 015290          224 ISNNSDCETFVSA-D-D--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV  292 (409)
Q Consensus       224 l~~~~~~~~l~~~-~-d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i  292 (409)
                      ++++|+++.++.+ . .        +.+.++|+. +.+.+..+       ... .....++|+|+|..++++.. .++.|
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~vv~~i-------~vg-~~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPI-------SNG-HDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECC-------EEE-EEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECC-CCeEEEEE-------ECC-CCcceEEECCCCCEEEEEccCCCCeE
Confidence            7899999988876 5 3        367799998 66666553       211 25789999999934667777 59999


Q ss_pred             EEEeCCCccc
Q 015290          293 RLVDMRQSAL  302 (409)
Q Consensus       293 ~iwd~~~~~~  302 (409)
                      .++|+.+++.
T Consensus       340 sVID~~t~kv  349 (368)
T 1mda_H          340 DIYDAASDQD  349 (368)
T ss_dssp             EEEESSSCEE
T ss_pred             EEEECCCCcE
Confidence            9999999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.72  E-value=6.7e-06  Score=79.16  Aligned_cols=79  Identities=8%  Similarity=0.020  Sum_probs=52.6

Q ss_pred             CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +|.|..||+.+++..      |.. ..           ..+.....+...+.+++.|+ |+.|+.||.++ ++.+-.++.
T Consensus       454 ~g~l~A~D~~tG~~~------W~~-~~-----------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAA------WEV-PY-----------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEE------EEE-EE-----------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ceeEEEEECCCCCeE------eEc-cC-----------CCCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeC
Confidence            377888999888742      222 00           12233445666778888887 59999999987 898888876


Q ss_pred             ccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      ......              .-+.|..||+..+
T Consensus       515 ~~~~~~--------------~p~ty~~~G~qyv  533 (689)
T 1yiq_A          515 ASGVMA--------------APVTYSVDGEQYV  533 (689)
T ss_dssp             SSCCCS--------------CCEEEEETTEEEE
T ss_pred             CCCccc--------------CceEEEECCEEEE
Confidence            544321              2477788887443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=4.1e-06  Score=69.67  Aligned_cols=198  Identities=8%  Similarity=-0.004  Sum_probs=113.9

Q ss_pred             ceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      ....+.|  ++++.++++.+.  ++.|.+.|+.+++........                                    
T Consensus        22 f~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------------------------------------   63 (266)
T 2iwa_A           22 FTQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD------------------------------------   63 (266)
T ss_dssp             CEEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC------------------------------------
T ss_pred             CcccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC------------------------------------
Confidence            3678999  677754444443  579999999998876543211                                    


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                             .+ .....+++.  ++.|. +. .++.+.++|.. +.+.+..+...    .++    
T Consensus        64 -----------------------~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g----~~~----  108 (266)
T 2iwa_A           64 -----------------------DS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQ----MKD----  108 (266)
T ss_dssp             -----------------------TT-CCEEEEEEE--TTEEEEEETTCSEEEEEETT-TTEEEEEEECC----SSS----
T ss_pred             -----------------------CC-cceEEEEEe--CCEEEEEEecCCEEEEEECC-CCcEEEEEECC----CCC----
Confidence                                   11 111234554  44554 45 89999999998 67777765322    011    


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-Ce
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~  349 (409)
                       ...++++| +.++.+..++.|.++|..+.+..    ..+.. ...+       ..-..++.+.|. +|+..+.... +.
T Consensus       109 -g~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~----~~I~V-g~~~-------~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          109 -GWGLATDG-KILYGSDGTSILYEIDPHTFKLI----KKHNV-KYNG-------HRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             -CCEEEECS-SSEEEECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             -eEEEEECC-CEEEEECCCCeEEEEECCCCcEE----EEEEE-CCCC-------cccccceeEEEE-CCEEEEecCCCCe
Confidence             12355677 54555556889999999886542    22222 0000       001236678888 6755444434 99


Q ss_pred             EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      |.+-|..+ ++.+..+............  ..........++|+|+++.|+.++
T Consensus       174 V~vID~~t-g~V~~~I~~~g~~~~~~~~--~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          174 IARISAKD-GTLLGWILLPNLRKKLIDE--GFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEEEETTT-CCEEEEEECHHHHHHHHHT--TCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCC-CcEEEEEECCCcccccccc--cccccCceEEEEEcCCCCEEEEEC
Confidence            99999986 8888888743100000000  000000015899999987655433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.69  E-value=5.7e-09  Score=92.82  Aligned_cols=148  Identities=10%  Similarity=0.106  Sum_probs=74.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (409)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (409)
                      -++..+++++.|+.|..||..+++.......                                                 
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------   37 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------   37 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------------------------------------
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------------------------------------
Confidence            3577999999999999999999987655321                                                 


Q ss_pred             ccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE-EEEEeCCCCCE
Q 015290          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNL  282 (409)
Q Consensus       205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~  282 (409)
                                    ..+.+..+..++..++++ .|+.|+.||.. +++.+..+...      ....+. +..+. .+ ..
T Consensus        38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~------~~~~~~~sp~~~-~~-~~   94 (369)
T 2hz6_A           38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFT------IPELVQASPCRS-SD-GI   94 (369)
T ss_dssp             --------------CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCC------HHHHHTTCSCC-------
T ss_pred             --------------CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeecc------CccccccCceEe-cC-CE
Confidence                          112222233567777887 99999999997 55544332111      000010 01111 23 56


Q ss_pred             EEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcc
Q 015290          283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  361 (409)
Q Consensus       283 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~  361 (409)
                      +++++.++.|+.||.++++..    ..+..+              .   ...++|++..|++++ ++.|+.||.++ ++.
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~----w~~~~~--------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~  152 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQ----QTLSSA--------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-REL  152 (369)
T ss_dssp             CCCCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSC
T ss_pred             EEEEeCCCEEEEEECCCCcEE----EEecCC--------------C---cccccccCCEEEEEecCCEEEEEECCC-CCE
Confidence            777888999999999998742    222220              0   134566778888876 49999999986 666


Q ss_pred             eEEEe
Q 015290          362 VATFK  366 (409)
Q Consensus       362 ~~~~~  366 (409)
                      +-.+.
T Consensus       153 ~W~~~  157 (369)
T 2hz6_A          153 RWNAT  157 (369)
T ss_dssp             CCEEE
T ss_pred             EEeEe
Confidence            55544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.67  E-value=4.5e-05  Score=64.24  Aligned_cols=112  Identities=14%  Similarity=0.061  Sum_probs=70.2

Q ss_pred             ceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC--CCeEEEE
Q 015290          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV  295 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~--dg~i~iw  295 (409)
                      ....+++++++..|+.+  ..+.|.++++. ... ...+      ..........++++|++..++++...  .+.|..+
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~-~~~~------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQ-RRVL------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEE------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcC-CCC-EEEE------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            45789999976666554  67899999987 322 2221      11112456899999965144444433  4688888


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      ++.....     ..+..            ........++++|++..|..+. . +.|.++|+.
T Consensus       152 ~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          152 HMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             ETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence            8764321     11111            0013467899999988777664 3 899999986

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.66  E-value=1.6e-05  Score=69.11  Aligned_cols=121  Identities=11%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             ceeEEEeCC-CCCeEEEe-c-----------------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC
Q 015290          220 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (409)
Q Consensus       220 ~v~~l~~~~-~~~~l~~~-~-----------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (409)
                      ....+++.+ +|+..++. .                 ++.|..||.. .+......       . .-.....++++|++ 
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~-------~-~~~~p~gia~~~dg-  196 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL-------K-ELHVPGGAEVSADS-  196 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE-------E-EESCCCEEEECTTS-
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec-------c-CCccCcceEECCCC-
Confidence            356788888 88766654 2                 2667778875 33322111       1 11234679999998 


Q ss_pred             CEEE-EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e----------cC
Q 015290          281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D----------YM  348 (409)
Q Consensus       281 ~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~----------~~  348 (409)
                      +.|+ +-...+.|.+|++......  ....+..             ..+ ...++++++|++.++. .          .+
T Consensus       197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~  260 (322)
T 2fp8_A          197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP  260 (322)
T ss_dssp             SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence            7554 4456789999998753210  0111111             012 5678999999866654 3          25


Q ss_pred             eEEEEEccCCCcceEEEecc
Q 015290          349 NLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~  368 (409)
                      .|..+|..  ++.+..+...
T Consensus       261 ~v~~~d~~--G~~~~~~~~~  278 (322)
T 2fp8_A          261 KGIKFDEF--GNILEVIPLP  278 (322)
T ss_dssp             EEEEECTT--SCEEEEEECC
T ss_pred             EEEEECCC--CCEEEEEECC
Confidence            67788864  7777777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=7.5e-06  Score=67.31  Aligned_cols=196  Identities=11%  Similarity=0.091  Sum_probs=113.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      .-...|.|  + ++.++.+.+.+|  .|+.+|+.+++........                                   
T Consensus        43 ~ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----------------------------------   84 (262)
T 3nol_A           43 AFTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----------------------------------   84 (262)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------------------------
T ss_pred             cccceEEE--E-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------------------------
Confidence            34578899  4 666666777766  8999999999876553311                                   


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                                               ....--.+++  +++.|.. . .++.+.+||.. +.+.+..+...     + .  
T Consensus        85 -------------------------~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~-t~~~~~ti~~~-----~-e--  128 (262)
T 3nol_A           85 -------------------------KRYFGEGISD--WKDKIVGLTWKNGLGFVWNIR-NLRQVRSFNYD-----G-E--  128 (262)
T ss_dssp             -------------------------TTCCEEEEEE--ETTEEEEEESSSSEEEEEETT-TCCEEEEEECS-----S-C--
T ss_pred             -------------------------CccceeEEEE--eCCEEEEEEeeCCEEEEEECc-cCcEEEEEECC-----C-C--
Confidence                                     0001112333  3444544 4 79999999998 77777775432     1 1  


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                        ...+++++ ..|+....++.|.++|..+.+..    ..+.. ....       ..-..++.+.|. +|+..+..-. +
T Consensus       129 --G~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~----~~I~V-~~~g-------~~~~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          129 --GWGLTHND-QYLIMSDGTPVLRFLDPESLTPV----RTITV-TAHG-------EELPELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             --CCCEEECS-SCEEECCSSSEEEEECTTTCSEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             --ceEEecCC-CEEEEECCCCeEEEEcCCCCeEE----EEEEe-ccCC-------ccccccceeEEE-CCEEEEEEccCC
Confidence              12333566 55555555788999999886642    22221 0000       001234557776 6765544433 9


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      .|.+.|..+ ++.+..+....-... ..........  ...+||+|+++.|...+
T Consensus       193 ~I~vIDp~t-G~V~~~Id~~~L~~~-~~~~~~~~~v--lNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          193 KIVRIDPET-GKVTGIIDLNGILAE-AGPLPSPIDV--LNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEECTTT-CBEEEEEECTTGGGG-SCSCCSSCCC--EEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCC-CcEEEEEECCcCccc-cccccCcCCc--eEEEEEcCCCCEEEEEC
Confidence            999999987 888888875321100 0000000011  15899999987766554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.61  E-value=4.5e-05  Score=73.46  Aligned_cols=165  Identities=10%  Similarity=-0.014  Sum_probs=90.1

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeeccC-CCcccccccccccccCceeccCCCCCceeeccc---ccccceeEEEecC
Q 015290          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE---WTENMATKIANVG  202 (409)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~  202 (409)
                      +..+++++.|+.|..+|..+++........ .......+.     ...+.   . .+.++....   ...++.+..+|.+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~-----~sP~v---~-~g~v~vg~~~~~~~~~g~v~a~D~~  191 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTIT-----GAPRV---V-NGKVVIGNGGAEFGVRGYVTAYDAE  191 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCC-----SCCEE---E-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCcccc-----CCcEE---E-CCEEEEEeCCCccCCCCEEEEEECC
Confidence            458888899999999999999988766542 110000000     00000   0 111111111   1135678888877


Q ss_pred             Ccccceeeeeecc---------------------------ccccceeEEEeCCCCCeEEEe-cCC---------------
Q 015290          203 NSVHARCQKVYPH---------------------------AHDFNINSISNNSDCETFVSA-DDL---------------  239 (409)
Q Consensus       203 ~~~~~~~~~~~~~---------------------------~~~~~v~~l~~~~~~~~l~~~-~d~---------------  239 (409)
                      +............                           +.......++++|+...++.+ .++               
T Consensus       192 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  271 (689)
T 1yiq_A          192 TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDN  271 (689)
T ss_dssp             TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred             CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            6432221111000                           011111357888888888888 665               


Q ss_pred             ----eEEEEEccCCCceeeeeecCCCcCcC--ccCceEEEEEeCCCCC---EEEEEeCCCeEEEEeCCCccc
Q 015290          240 ----RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCN---LLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       240 ----~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---~l~s~s~dg~i~iwd~~~~~~  302 (409)
                          .|..+|.. +++.+..+.......-.  ....+.......+| +   .++.++.+|.++++|.+++++
T Consensus       272 ~y~~~v~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          272 LFLSSIVAVNAD-TGEYVWHYQTTPGDAWDYTATQHMILAELPIDG-KPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             TTTTEEEEEETT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             eeeeeEEEEEcc-CCceeEeeecCCcccccccCCCCcEEEeeccCC-cEEEEEEEECCCCeEEEEECCCCCE
Confidence                38999998 67666554322110000  11222222333355 4   788999999999999999875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.61  E-value=1e-05  Score=71.94  Aligned_cols=117  Identities=11%  Similarity=0.119  Sum_probs=63.1

Q ss_pred             EeCCCCCeEEEe-c------CCeEEEEEccCCCc--eeeeeecCCCcCcC-----------ccCceEEEEEeCCCCCEEE
Q 015290          225 SNNSDCETFVSA-D------DLRINLWNLEISDQ--CFNIVDMKPSNMDD-----------LTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       225 ~~~~~~~~l~~~-~------d~~i~lwd~~~~~~--~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~~l~  284 (409)
                      +|+|++++++.+ .      +++|.+|... .+.  ..+++++......+           -......+.++||| ++|.
T Consensus       259 ~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLY  336 (462)
T 2ece_A          259 LHDPTKLMGFINMVVSLKDLSSSIWLWFYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLY  336 (462)
T ss_dssp             CSSTTCCEEEEEEEEETTTCCEEEEEEEEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEE
T ss_pred             eECCCCCEEEEEEeeeccCCCceEEEEEec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-CEEE
Confidence            449999988876 5      4577777665 232  12223222211111           02457889999999 7666


Q ss_pred             EEe-CCCeEEEEeCCCccccccccccccccccccCCc-ccccc--cccceeeeEeccCCCEEEEee
Q 015290          285 YSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSK-SFFTE--IIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       285 s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      .+. ..+.|.+||+..... .+.......  .+...+ ....+  -......++++|||++|+++.
T Consensus       337 VSnrg~d~VavfdV~d~~~-~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          337 LSLWGIGEVRQYDISNPFK-PVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEETTTTEEEEEECSSTTS-CEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCCCEEEEEEecCCCC-cEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            655 468999999864311 111111111  000000 00000  012357899999999998876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.60  E-value=2.1e-05  Score=64.63  Aligned_cols=194  Identities=8%  Similarity=0.100  Sum_probs=116.5

Q ss_pred             CcEEEEEECCCCCEEEEEecCC--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .....+.|+ ++.++.+.+.+|  .|+++|+.+++.                           +..+.-.          
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv---------------------------~~~~~l~----------   84 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT---------------------------LQQIELG----------   84 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE---------------------------EEEEECC----------
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE---------------------------EEEEecC----------
Confidence            345788998 677777777776  899999998874                           2222211          


Q ss_pred             eeccceE--EEEEEecCCCCEEE-EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          111 EIEEKIN--RVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       111 ~~~~~v~--~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                         ....  .++.    ++..|. +.-.++.+.++|..+.+....+..                                
T Consensus        85 ---~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~--------------------------------  125 (262)
T 3nol_A           85 ---KRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY--------------------------------  125 (262)
T ss_dssp             ---TTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCCEEEEEEC--------------------------------
T ss_pred             ---CccceeEEEE----eCCEEEEEEeeCCEEEEEECccCcEEEEEEC--------------------------------
Confidence               2232  3444    333444 445688999999988876654331                                


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                 .++ +  ..+  +++++.|+.+ .++.|.++|.. +.+.+..+.+.   ..+.
T Consensus       126 ---------------------------~~e-G--~gl--t~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~---~~g~  169 (262)
T 3nol_A          126 ---------------------------DGE-G--WGL--THNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVT---AHGE  169 (262)
T ss_dssp             ---------------------------SSC-C--CCE--EECSSCEEECCSSSEEEEECTT-TCSEEEEEECE---ETTE
T ss_pred             ---------------------------CCC-c--eEE--ecCCCEEEEECCCCeEEEEcCC-CCeEEEEEEec---cCCc
Confidence                                       111 1  223  3567788887 78889999998 56666654332   1111


Q ss_pred             c-CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          267 T-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       267 ~-~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      . ..++.+.|. +| .+++..-.++.|.+.|.++++..    ..+....-.+.... ...-....+.++|+|+++.|...
T Consensus       170 ~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~----~~Id~~~L~~~~~~-~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          170 ELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVT----GIIDLNGILAEAGP-LPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             ECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEE----EEEECTTGGGGSCS-CCSSCCCEEEEEEETTTTEEEEE
T ss_pred             cccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEE----EEEECCcCcccccc-ccCcCCceEEEEEcCCCCEEEEE
Confidence            1 345667887 67 77766667889999999998752    22222000000000 00112467899999988766655


Q ss_pred             e
Q 015290          346 D  346 (409)
Q Consensus       346 ~  346 (409)
                      +
T Consensus       243 G  243 (262)
T 3nol_A          243 G  243 (262)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=3.6e-05  Score=73.93  Aligned_cols=166  Identities=7%  Similarity=-0.112  Sum_probs=90.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeeeccC-CCcccccccccccccCceeccCCCCCceeecccc----cccceeEEEe
Q 015290          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW----TENMATKIAN  200 (409)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~  200 (409)
                      ++..++.++.|+.+..+|..+++........ .......+     ....+.   . .+. ++.+..    ..++.|+.+|
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~-----~~~p~v---~-~~~-v~v~~~~~~~~~~g~v~a~D  196 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTI-----TGAPRV---F-KGK-VIIGNGGAEYGVRGYITAYD  196 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBC-----CSCCEE---E-TTE-EEECCBCTTTCCBCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCccc-----ccCcEE---E-CCE-EEEEecccccCCCCEEEEEE
Confidence            3558888899999999999999988776543 10000000     000000   0 111 111111    1256788888


Q ss_pred             cCCcccceeeeeecc----------------------------ccccceeEEEeCCCCCeEEEe-cCC------------
Q 015290          201 VGNSVHARCQKVYPH----------------------------AHDFNINSISNNSDCETFVSA-DDL------------  239 (409)
Q Consensus       201 ~~~~~~~~~~~~~~~----------------------------~~~~~v~~l~~~~~~~~l~~~-~d~------------  239 (409)
                      ..+..........-.                            +.......++++|++..++.+ .++            
T Consensus       197 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~  276 (677)
T 1kb0_A          197 AETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKG  276 (677)
T ss_dssp             TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred             CCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccC
Confidence            766432221111000                            111112357888888888877 553            


Q ss_pred             -------eEEEEEccCCCceeeeeecCCCcCc--CccCceEEEEEeCCCC--CEEEEEeCCCeEEEEeCCCccc
Q 015290          240 -------RINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       240 -------~i~lwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~--~~l~s~s~dg~i~iwd~~~~~~  302 (409)
                             .|..+|.. +++.+..+.......-  .......-+....+|.  ..++.++.+|.++++|.+++++
T Consensus       277 gd~~~~~sv~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          277 GDNLYLASIVALDPD-TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             CCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCeeeEEEEEEECC-CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence                   48889988 6666655432211000  0012223334444552  4788899999999999999875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.54  E-value=3e-05  Score=63.80  Aligned_cols=197  Identities=9%  Similarity=0.024  Sum_probs=114.4

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      .-...|.|  + ++.++++.+.++.|+.+|+.+++..... ..                                     
T Consensus        55 ~ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-------------------------------------   93 (268)
T 3nok_A           55 AFTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-------------------------------------   93 (268)
T ss_dssp             CCEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-------------------------------------
T ss_pred             cccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-------------------------------------
Confidence            34578888  3 4666777788899999999998765542 11                                     


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                                            .. ..--.+++.. ++..+.. .++.+.+||.. +.+.+..+...     +. +  ..
T Consensus        94 ----------------------~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~~-----~e-G--wG  140 (268)
T 3nok_A           94 ----------------------GN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRYS-----GE-G--WG  140 (268)
T ss_dssp             ----------------------TT-CCEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEECS-----SC-C--CC
T ss_pred             ----------------------CC-cceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeCC-----Cc-e--eE
Confidence                                  00 0012244432 2333344 89999999998 77777775432     11 1  23


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEE
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~  351 (409)
                      ++  +++ +.|+.+..++.|.++|..+.+..    ..+.. ...+       ..-..++.+.|. +|+..+..-. +.|.
T Consensus       141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V-~~~g-------~~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQV-KLRG-------QPVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEe-CCCC-------cccccccccEEe-CCEEEEEECCCCeEE
Confidence            44  556 66666666889999999887642    22222 0000       001235667777 7765544434 8999


Q ss_pred             EEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       352 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +-|..+ ++.+..+....-...........+...  ..+||+|+++.|...+
T Consensus       205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred             EEeCCC-CcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence            999986 888888875421000000000001111  5899999876555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.52  E-value=0.0002  Score=59.21  Aligned_cols=208  Identities=11%  Similarity=0.145  Sum_probs=118.0

Q ss_pred             cceEEEEEEecCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290          114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (409)
                      +.+..++|  +|++..| ++...++.|...|.. ++.......                                     
T Consensus        27 ~~lSGla~--~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------------------------------------   66 (255)
T 3qqz_A           27 NNISSLTW--SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------------------------------------   66 (255)
T ss_dssp             SCEEEEEE--ETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------------------------------------
T ss_pred             cCcceeEE--eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------------------------------------
Confidence            67999999  5665555 456778888888887 554433210                                     


Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc--eeeeeecCCCcCcCccCc
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~  269 (409)
                                            .+ ....-.+++.+++.++++. .++.+.++++...+.  .......+.. .......
T Consensus        67 ----------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g  122 (255)
T 3qqz_A           67 ----------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCG  122 (255)
T ss_dssp             ----------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-SCCCSSC
T ss_pred             ----------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-cccccCC
Confidence                                  11 1345678888888877777 788999999874443  2233222110 1223456


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-  347 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-  347 (409)
                      ...++|+|.+ +.|.++.......+|.++ +.................      ..+...+.+++++|....|..-+ . 
T Consensus       123 ~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~~~~l~i~~~~~~~~------~~~~~d~S~l~~dp~tg~lliLS~~s  194 (255)
T 3qqz_A          123 FEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLSSNELHISKDKALQR------QFTLDDVSGAEFNQQKNTLLVLSHES  194 (255)
T ss_dssp             CEEEEEETTT-TEEEEEEESSSEEEEEEE-STTCSSCCEEEECHHHHH------TCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred             cceEEEeCCC-CEEEEEECcCCceEEEEc-ccccCCceeeecchhhcc------ccccCCceeEEEcCCCCeEEEEECCC
Confidence            7999999998 666666655444555543 111100011111000000      00123578999999865555544 4 


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      ..|..+|.+  ++.+..+.-..+.-.    +  ...+-..-.++|.++|+..++
T Consensus       195 ~~L~~~d~~--g~~~~~~~L~~g~~~----l--~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          195 RALQEVTLV--GEVIGEMSLTKGSRG----L--SHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             TEEEEECTT--CCEEEEEECSTTGGG----C--SSCCCSEEEEEECTTCCEEEE
T ss_pred             CeEEEEcCC--CCEEEEEEcCCccCC----c--ccccCCCCeeEECCCCCEEEE
Confidence            899999976  677666654322100    0  000111148999999985555

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.52  E-value=5.9e-05  Score=61.43  Aligned_cols=209  Identities=8%  Similarity=0.084  Sum_probs=118.7

Q ss_pred             ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCccccccccc
Q 015290           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (409)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (409)
                      .++.+.++ .|...          .-...+.|  +. +.++.+.+.+|  .|+.+|+.+++.........          
T Consensus         8 ~~~v~~~~-phd~~----------~ftqGL~~--~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----------   63 (243)
T 3mbr_X            8 GYRVVKRY-PHDTT----------AFTEGLFY--LR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----------   63 (243)
T ss_dssp             CEEEEEEE-ECCTT----------CCEEEEEE--ET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT----------
T ss_pred             ceEEEEEc-CCCCc----------cccccEEE--EC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC----------
Confidence            34556666 45432          55778999  33 55556666654  89999999998766533211          


Q ss_pred             ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEE
Q 015290          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWN  245 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd  245 (409)
                                                                       + ..--.+++.  ++.|. .. .++.+.+||
T Consensus        64 -------------------------------------------------~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           64 -------------------------------------------------P-YFGAGIVAW--RDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             -------------------------------------------------T-CCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             -------------------------------------------------C-cceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence                                                             0 001123333  34444 44 899999999


Q ss_pred             ccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (409)
                      .. +.+.+..+...     + .+  ..++  +++ ..|+.+..++.|.++|..+.+..    ..+.. ...+.       
T Consensus        92 ~~-tl~~~~ti~~~-----~-~G--wglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~-------  147 (243)
T 3mbr_X           92 LA-TLTPRARFRYP-----G-EG--WALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGR-------  147 (243)
T ss_dssp             TT-TTEEEEEEECS-----S-CC--CEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------
T ss_pred             CC-cCcEEEEEeCC-----C-Cc--eEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCc-------
Confidence            98 77777775432     1 11  3444  556 44554456889999999886542    22222 00000       


Q ss_pred             cccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccc-cCCCCccceeeEEEcCCCCeEEEcc
Q 015290          326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       326 ~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      .-..++.+.+. +|+..+..-. ..|.+.|..+ ++.+..+....-... .... .......  ..+|++|+++.|...+
T Consensus       148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~-~~~~~~~~~~vl--NGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          148 PLDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPD-ADALTDSTNDVL--NGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTT-TTSCCCTTSSCE--EEEEEETTTTEEEEEE
T ss_pred             ccccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCccc-cccccCCcCCce--EEEEEcCCCCEEEEEC
Confidence            01234556665 6665544433 8999999987 888888874421100 0000 0001111  5899999877665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=5.8e-05  Score=62.07  Aligned_cols=196  Identities=9%  Similarity=0.059  Sum_probs=117.8

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee-ecCCCccccccccce
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE-FQSHEPEFDYLKSLE  111 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~~  111 (409)
                      .....+.|+ ++.++.+.+.+|.|+++|+++++..                           .. +...           
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------~~~l~~~-----------   95 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------------------------WMERLGN-----------   95 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------------------------EEEECTT-----------
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------------------------eEECCCC-----------
Confidence            345688887 4667777888899999999998852                           11 2111           


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        .--..++.   ..++..++.-.++.+.++|..+.+....+..                                    
T Consensus        96 --~FgeGit~---~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~------------------------------------  134 (268)
T 3nok_A           96 --IFAEGLAS---DGERLYQLTWTEGLLFTWSGMPPQRERTTRY------------------------------------  134 (268)
T ss_dssp             --CCEEEEEE---CSSCEEEEESSSCEEEEEETTTTEEEEEEEC------------------------------------
T ss_pred             --cceeEEEE---eCCEEEEEEccCCEEEEEECCcCcEEEEEeC------------------------------------
Confidence              11123555   2344555556788999999998877655431                                    


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                             .++ +  ..++  ++++.|+.+ .++.|.++|.. +.+.+..+.+..  -...-..+
T Consensus       135 -----------------------~~e-G--wGLt--~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~--~g~~v~~l  183 (268)
T 3nok_A          135 -----------------------SGE-G--WGLC--YWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKL--RGQPVELI  183 (268)
T ss_dssp             -----------------------SSC-C--CCEE--EETTEEEEECSSSEEEEECTT-TCCEEEEEECEE--TTEECCCE
T ss_pred             -----------------------CCc-e--eEEe--cCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCC--CCcccccc
Confidence                                   111 1  2333  567888888 78999999988 666666553321  01112345


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEe
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR  345 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg  345 (409)
                      +.+.|. +| .+++..-.++.|.+.|.++++..    ..+....-.+........-....+.++++|+++ +++||
T Consensus       184 NeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~----~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          184 NELECA-NG-VIYANIWHSSDVLEIDPATGTVV----GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEEE-TT-EEEEEETTCSEEEEECTTTCBEE----EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccEEe-CC-EEEEEECCCCeEEEEeCCCCcEE----EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            778887 66 76766667889999999998752    222220000000000001124678999999865 55555

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.41  E-value=5e-05  Score=66.00  Aligned_cols=162  Identities=9%  Similarity=-0.044  Sum_probs=91.7

Q ss_pred             cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                      ++.+..+|.+ .   +....+ ......+.++...+++..++..  +.+..+| . .+......       ......+.+
T Consensus       156 ~~~l~~~d~~-g---~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~-~g~~~~~~-------~~~~~~~~~  219 (330)
T 3hxj_A          156 DNYLYAINPD-G---TEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-P-DGTEKWNF-------YAGYWTVTR  219 (330)
T ss_dssp             TSEEEEECTT-S---CEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-T-TSCEEEEE-------CCSSCCCSC
T ss_pred             CCEEEEECCC-C---CEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-C-CCcEEEEE-------ccCCcceec
Confidence            4566666664 1   222222 2233456667777777755555  8889999 4 45444332       222345778


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEE
Q 015290          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  352 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~i  352 (409)
                      +..+++| .+ ..++.++.|..+|... +..    ..+..   .          ...+..+.+.+++.+.+...++.|..
T Consensus       220 ~~~~~~g-~l-~v~t~~~gl~~~~~~g-~~~----~~~~~---~----------~~~~~~~~~~~~g~l~v~t~~ggl~~  279 (330)
T 3hxj_A          220 PAISEDG-TI-YVTSLDGHLYAINPDG-TEK----WRFKT---G----------KRIESSPVIGNTDTIYFGSYDGHLYA  279 (330)
T ss_dssp             CEECTTS-CE-EEEETTTEEEEECTTS-CEE----EEEEC---S----------SCCCSCCEECTTSCEEEECTTCEEEE
T ss_pred             eEECCCC-eE-EEEcCCCeEEEECCCC-CEe----EEeeC---C----------CCccccceEcCCCeEEEecCCCCEEE
Confidence            8888887 54 4456677888887533 221    11111   0          12234456666675554444588999


Q ss_pred             EEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +|. + ++.+..+......+               .++...++|++. .++.+|.+
T Consensus       280 ~d~-~-g~~~~~~~~~~~~~---------------~~~~~d~~g~l~-~gt~~G~~  317 (330)
T 3hxj_A          280 INP-D-GTEKWNFETGSWII---------------ATPVIDENGTIY-FGTRNGKF  317 (330)
T ss_dssp             ECT-T-SCEEEEEECSSCCC---------------SCCEECTTCCEE-EECTTSCE
T ss_pred             ECC-C-CcEEEEEEcCCccc---------------cceEEcCCCEEE-EEcCCCeE
Confidence            996 3 66666665433322               467777888654 56667654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.35  E-value=0.00022  Score=63.29  Aligned_cols=194  Identities=10%  Similarity=0.005  Sum_probs=101.4

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCccc
Q 015290          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (409)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (409)
                      +..++.++.++.|..+|..+++............  ..   .........    . ..++.+.  .++.+..+|..+.. 
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--~~---~~~~~~~~~----~-~~v~~g~--~~g~l~~~d~~tG~-  209 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--SL---RGESAPTTA----F-GAAVVGG--DNGRVSAVLMEQGQ-  209 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE----T-TEEEECC--TTTEEEEEETTTCC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--ee---cCCCCcEEE----C-CEEEEEc--CCCEEEEEECCCCc-
Confidence            3478888889999999999998776654321110  00   000000000    0 1122221  25567777765532 


Q ss_pred             ceeeeeeccccc-c-----ceeEEEeCC--CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeC
Q 015290          207 ARCQKVYPHAHD-F-----NINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  277 (409)
Q Consensus       207 ~~~~~~~~~~~~-~-----~v~~l~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  277 (409)
                        .+..+..... .     .+..+...|  .+..++.+ .++.+..+|.. +++.+....         ......+... 
T Consensus       210 --~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~-tG~~~w~~~---------~~~~~~~~~~-  276 (376)
T 3q7m_A          210 --MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR-SGQIMWKRE---------LGSVNDFIVD-  276 (376)
T ss_dssp             --EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT-TCCEEEEEC---------CCCEEEEEEE-
T ss_pred             --EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC-CCcEEeecc---------CCCCCCceEE-
Confidence              2211100000 0     000011111  24566666 88999999998 565554321         1123344443 


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEcc
Q 015290          278 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       278 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~  356 (409)
                       + ..++.++.++.|..+|..+++..      +.. ....         ...+......  +..|+.++ ++.|.++|..
T Consensus       277 -~-~~l~~~~~~g~l~~~d~~tG~~~------w~~-~~~~---------~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          277 -G-NRIYLVDQNDRVMALTIDGGVTL------WTQ-SDLL---------HRLLTSPVLY--NGNLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             -T-TEEEEEETTCCEEEEETTTCCEE------EEE-CTTT---------TSCCCCCEEE--TTEEEEECTTSEEEEEETT
T ss_pred             -C-CEEEEEcCCCeEEEEECCCCcEE------Eee-cccC---------CCcccCCEEE--CCEEEEEeCCCeEEEEECC
Confidence             4 56777788999999999988642      222 0000         0112222222  45666666 4999999998


Q ss_pred             CCCcceEEEec
Q 015290          357 MDSTPVATFKI  367 (409)
Q Consensus       357 ~~~~~~~~~~~  367 (409)
                      + ++.+..+..
T Consensus       337 t-G~~~~~~~~  346 (376)
T 3q7m_A          337 D-GRFVAQQKV  346 (376)
T ss_dssp             T-CCEEEEEEC
T ss_pred             C-CcEEEEEec
Confidence            6 787777665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.35  E-value=0.00062  Score=56.22  Aligned_cols=218  Identities=11%  Similarity=0.143  Sum_probs=122.3

Q ss_pred             CcEEEEEECCCCCE-EEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee--cCCCcccccccc
Q 015290           33 DIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS  109 (409)
Q Consensus        33 ~~v~~v~~~~~~~~-la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~  109 (409)
                      +.+..++|+|++.. +++...++.|...|.. ++.                           ...+  .+.         
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------------------------~~~i~l~g~---------   69 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------------------------IRTIPLDFV---------   69 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------------------------EEEEECSSC---------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------------------------EEEEecCCC---------
Confidence            46999999997654 4556677888888877 432                           2222  222         


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ...-.|++  .+++.++++.-.++.+.++++..........                                   
T Consensus        70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~-----------------------------------  108 (255)
T 3qqz_A           70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILK-----------------------------------  108 (255)
T ss_dssp             ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEE-----------------------------------
T ss_pred             ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeee-----------------------------------
Confidence                35677888  5777766776677888888876543211100                                   


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEcc--CCCceeeeeecCCCcCcCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~--~~~~~~~~~~~~~~~~~~~  266 (409)
                              ...+       ...  ..........|+|+|.++.|.++ ......+|.+.  .....+.....+...-..+
T Consensus       109 --------~~~~-------~~~--~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A          109 --------KIKI-------PLQ--ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             --------EEEC-------CCS--SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             --------eecc-------ccc--cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence                    0000       000  01234457889999999878777 54444555553  1111222221100000112


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...+.+++++|...++++.....+.|.++|.... .    ...+.. ..+   ...+..--.....++|.++|++.++ +
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~----~~~~~L-~~g---~~~l~~~~~qpEGia~d~~G~lyIv-s  241 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V----IGEMSL-TKG---SRGLSHNIKQAEGVAMDASGNIYIV-S  241 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E----EEEEEC-STT---GGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E----EEEEEc-CCc---cCCcccccCCCCeeEECCCCCEEEE-c
Confidence            3356899999987567777777888999997653 2    122222 000   0000000135678999999985555 5


Q ss_pred             c-CeEEEEEc
Q 015290          347 Y-MNLKLWDI  355 (409)
Q Consensus       347 ~-~~v~iwd~  355 (409)
                      + +.++.+.-
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            5 76666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.34  E-value=0.00042  Score=56.47  Aligned_cols=198  Identities=9%  Similarity=0.047  Sum_probs=116.1

Q ss_pred             CCcEEEEEECCCCCEEEEEecCC--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      ......+.|++ +.++.+.+.+|  .|+.+|+.+++.                           +....-.         
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv---------------------------~~~~~l~---------   62 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI---------------------------LQRAEVP---------   62 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE---------------------------EEEEECC---------
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE---------------------------EEEEeCC---------
Confidence            34577899986 56666666654  899999998874                           2222111         


Q ss_pred             ceeccce--EEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          110 LEIEEKI--NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       110 ~~~~~~v--~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                          ...  -.++.   .+++..+..-.++.+.++|..+.+....+..                                
T Consensus        63 ----~~~fgeGi~~---~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~--------------------------------  103 (243)
T 3mbr_X           63 ----PPYFGAGIVA---WRDRLIQLTWRNHEGFVYDLATLTPRARFRY--------------------------------  103 (243)
T ss_dssp             ----TTCCEEEEEE---ETTEEEEEESSSSEEEEEETTTTEEEEEEEC--------------------------------
T ss_pred             ----CCcceeEEEE---eCCEEEEEEeeCCEEEEEECCcCcEEEEEeC--------------------------------
Confidence                122  23444   2333444556788999999988876655331                                


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                                 .++ +  ..++  ++++.|+.+ .++.|.++|.. +.+.+..+.+...  ...
T Consensus       104 ---------------------------~~~-G--wglt--~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~--g~~  148 (243)
T 3mbr_X          104 ---------------------------PGE-G--WALT--SDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAG--GRP  148 (243)
T ss_dssp             ---------------------------SSC-C--CEEE--ECSSCEEEECSSSEEEEECTT-TCCEEEEEECEET--TEE
T ss_pred             ---------------------------CCC-c--eEEe--eCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccC--Ccc
Confidence                                       111 1  3343  467778887 88899999998 5666665533210  001


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      -..++.+.+. +| .+++..-.+..|.+.|.++++..    ..+....-.+.....-..-....+.++++|+++.|...+
T Consensus       149 ~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~----~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          149 LDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVV----AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEE----EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEE----EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            1345677776 56 66666656889999999998752    333220000000000001124678999999876555443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.33  E-value=0.0004  Score=61.57  Aligned_cols=191  Identities=11%  Similarity=0.076  Sum_probs=99.6

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcc
Q 015290          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (409)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  205 (409)
                      ++..++.++.++.|..+|..+++...........  .+.        ...   . . ..++.+.  .++.+..+|..+..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~--------p~~---~-~-~~v~v~~--~~g~l~~~d~~tG~  164 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA--LSR--------PVV---S-D-GLVLIHT--SNGQLQALNEADGA  164 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC--CSC--------CEE---E-T-TEEEEEC--TTSEEEEEETTTCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce--EcC--------CEE---E-C-CEEEEEc--CCCeEEEEECCCCc
Confidence            4558888899999999999999887655432110  000        000   0 1 1122222  25677777776532


Q ss_pred             cceeeeeeccccccce------eEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc---e-EEEE
Q 015290          206 HARCQKVYPHAHDFNI------NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV---I-TSAE  274 (409)
Q Consensus       206 ~~~~~~~~~~~~~~~v------~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~  274 (409)
                         .+..+ ... ..+      ......  +..++.+ .++.+..+|.. +++.+................   + ....
T Consensus       165 ---~~W~~-~~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~  236 (376)
T 3q7m_A          165 ---VKWTV-NLD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME-QGQMIWQQRISQATGSTEIDRLSDVDTTPV  236 (376)
T ss_dssp             ---EEEEE-ECC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEETT-TCCEEEEEECCC-----------CCCCCCE
T ss_pred             ---EEEEE-eCC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC-CCcEEEEEecccCCCCcccccccccCCCcE
Confidence               22211 111 111      111111  4467777 89999999998 566554432211000000000   0 0111


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEE
Q 015290          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  353 (409)
Q Consensus       275 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iw  353 (409)
                      ..  + ..++.++.++.+..+|.++++..      +.. .            ......+...  +..|..++ ++.|..+
T Consensus       237 ~~--~-~~v~~~~~~g~l~~~d~~tG~~~------w~~-~------------~~~~~~~~~~--~~~l~~~~~~g~l~~~  292 (376)
T 3q7m_A          237 VV--N-GVVFALAYNGNLTALDLRSGQIM------WKR-E------------LGSVNDFIVD--GNRIYLVDQNDRVMAL  292 (376)
T ss_dssp             EE--T-TEEEEECTTSCEEEEETTTCCEE------EEE-C------------CCCEEEEEEE--TTEEEEEETTCCEEEE
T ss_pred             EE--C-CEEEEEecCcEEEEEECCCCcEE------eec-c------------CCCCCCceEE--CCEEEEEcCCCeEEEE
Confidence            11  3 46777788999999999988642      222 0            0112233332  45566555 4899999


Q ss_pred             EccCCCcceEEEe
Q 015290          354 DIRMDSTPVATFK  366 (409)
Q Consensus       354 d~~~~~~~~~~~~  366 (409)
                      |..+ ++.+-...
T Consensus       293 d~~t-G~~~w~~~  304 (376)
T 3q7m_A          293 TIDG-GVTLWTQS  304 (376)
T ss_dssp             ETTT-CCEEEEEC
T ss_pred             ECCC-CcEEEeec
Confidence            9986 66665554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.29  E-value=0.00075  Score=65.76  Aligned_cols=31  Identities=13%  Similarity=0.064  Sum_probs=25.0

Q ss_pred             cEEEEEEC-CCCCEEEEEec-CC----eEEEEeccCC
Q 015290           34 IVSAIEFD-KTGDYLAVGDR-GG----RVILFETVGG   64 (409)
Q Consensus        34 ~v~~v~~~-~~~~~la~~~~-dg----~i~iw~~~~~   64 (409)
                      .+...+|| |||++||.+.. +|    .|.++|+.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g  211 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP  211 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence            68889999 99999986643 22    5999999887

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.00067  Score=61.28  Aligned_cols=71  Identities=10%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             eeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeC
Q 015290          221 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~  297 (409)
                      ...++++| ++..+++- .++.|..++.. .+.......     .. .......++|+|+| + ++++-...+.|..++.
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeC
Confidence            46788999 66666666 78899999987 443322211     11 12456899999999 7 5555567788999876


Q ss_pred             CC
Q 015290          298 RQ  299 (409)
Q Consensus       298 ~~  299 (409)
                      ..
T Consensus       300 d~  301 (430)
T 3tc9_A          300 DW  301 (430)
T ss_dssp             ET
T ss_pred             Cc
Confidence            53

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.0018  Score=56.63  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=70.2

Q ss_pred             eeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-CeEEEEeC
Q 015290          221 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g~i~iwd~  297 (409)
                      ...+++.+.+..|+. - ..+.|.+.++. ... ...+      ....-.....++++|.+..++.+-... +.|..+++
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~-~~~l------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAH-RKVL------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEE------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCc-eEEE------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            467888876555554 4 67889999987 322 2221      122234568999999662555554445 78888887


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      .....     ..+-.            ......+.++++|++..|..+. . +.|..+|+.
T Consensus       190 dG~~~-----~~~~~------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          190 DGSGR-----RIIAD------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             TSCSC-----EESCC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCc-----EEEEE------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            65321     11111            0023568899999888777765 3 889999986

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.23  E-value=0.00076  Score=64.71  Aligned_cols=282  Identities=11%  Similarity=0.064  Sum_probs=137.4

Q ss_pred             EEEECC-CCCEEEEEecCC-----------eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCcc
Q 015290           37 AIEFDK-TGDYLAVGDRGG-----------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPE  103 (409)
Q Consensus        37 ~v~~~~-~~~~la~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~  103 (409)
                      ++++.+ ++++++.|+.+.           .+.+||..+++-.                         .+..+.. +.  
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-------------------------~~~~~~~~~~--  242 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-------------------------DRTVTVTKHD--  242 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-------------------------CCEEEECSCC--
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-------------------------eCcccCCCCC--
Confidence            556667 888888887543           5788888776531                         1111211 11  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                                ....++++  ..+++.++.|+ .+..+.+||..+++......+....            ....+...+++
T Consensus       243 ----------~~~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R------------~~~s~~~~~dg  298 (656)
T 1k3i_A          243 ----------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR------------GYQSSATMSDG  298 (656)
T ss_dssp             ----------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC------------SSCEEEECTTS
T ss_pred             ----------CccccccC--CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc------------cccceEEecCC
Confidence                      22334566  47898888887 4468999999988766543222111            00111111223


Q ss_pred             ceeeccc-cc---ccceeEEEecCCcccceee-----eeeccccccceeEEEeCCCCCeEEEe-cC---------CeEEE
Q 015290          183 AHGYHLE-WT---ENMATKIANVGNSVHARCQ-----KVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINL  243 (409)
Q Consensus       183 ~~~~~~~-~~---~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------~~i~l  243 (409)
                      .++..|+ ..   ....+.+||..+..= ..+     .-.... ..   ...+..++..++.| .+         ..+..
T Consensus       299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W-~~~~~~~~~p~~~~-~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~  373 (656)
T 1k3i_A          299 RVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTA-DK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNW  373 (656)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCC-CT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEE
T ss_pred             eEEEEeCcccCCcccccceEeCCCCCcc-eeCCCccccccccc-cc---cceeecCCceEEEECCCCcEEEecCccceee
Confidence            3333333 11   123688888865321 111     000000 00   01122344444444 44         35677


Q ss_pred             EEccCCCceeeeeecCCCc--CcCccCceEEEEEeC-CCCCEEEEEeCCC-----------eEEEEeCCCcccccccccc
Q 015290          244 WNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHP-IYCNLLAYSSSRG-----------FVRLVDMRQSALCDHSARI  309 (409)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p-~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~  309 (409)
                      ||.. ..............  .......-.++.|.. ++ ++++.|+.++           .+.+||..+....     .
T Consensus       374 yd~~-~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-----~  446 (656)
T 1k3i_A          374 YYTS-GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT-----V  446 (656)
T ss_dssp             EECS-TTCEEEEEEECEETTEECCCCBTCEEEEEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE-----E
T ss_pred             eecC-CcceeecCCccccccccCCCCCCCceEeccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee-----E
Confidence            8877 33322221111000  000011224555554 55 8888887543           5777777664321     1


Q ss_pred             ccccccccCCcccccccccceeeeEeccCCCEEEEee-c-----------CeEEEEEccCCCcceEEEecccCccccccc
Q 015290          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (409)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  377 (409)
                      ... ...+.        ...-.+++..|+|++++.|+ +           ..+.+||..+ .+ -..+..........  
T Consensus       447 ~~~-~~mp~--------~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~-W~~~~~~~~~R~~h--  513 (656)
T 1k3i_A          447 FAS-NGLYF--------ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DT-FYKQNPNSIVRVYH--  513 (656)
T ss_dssp             ECT-TCCSS--------CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TE-EEECCCCSSCCCTT--
T ss_pred             Ecc-CCCCC--------CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-Cc-eeecCCCCCccccc--
Confidence            110 00000        11223456678999998875 2           4689999875 32 22222111111000  


Q ss_pred             ccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          378 LYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       378 ~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                                ..+.+.|||+.++.|+.
T Consensus       514 ----------s~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          514 ----------SISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ----------EEEEECTTSCEEEEECC
T ss_pred             ----------cHhhcCCCcEEEecCCC
Confidence                      24556799999999885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=0.002  Score=55.27  Aligned_cols=154  Identities=11%  Similarity=0.102  Sum_probs=79.5

Q ss_pred             ceeEEEeCCCCCeEEEe-cCC--eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      .+..+++.++++++++. ...  .|..+|.. .+.........      .......++..+++ ..+++-..++.|.++|
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~~------~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d  144 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTLP------DAIFLNGITPLSDT-QYLTADSYRGAIWLID  144 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEECT------TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeCC------CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence            46789999999866665 332  46666765 44443332211      11223455555655 5555555688899999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcc--eEEEecccCcc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTP--VATFKIHEHLR  372 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~--~~~~~~~~~~~  372 (409)
                      ...++.     ..+.......  .....+.-...+.+  +|++++|..+. . +.|..|++...++.  ...+.....+ 
T Consensus       145 ~~~~~~-----~v~~~~~~~~--~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-  214 (306)
T 2p4o_A          145 VVQPSG-----SIWLEHPMLA--RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-  214 (306)
T ss_dssp             TTTTEE-----EEEEECGGGS--CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred             CCCCcE-----eEEEECCccc--cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence            765421     1100000000  00000001123344  88888777764 3 89999998632221  1222111111 


Q ss_pred             cccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                                     ..++++++|++.++....+
T Consensus       215 ---------------~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          215 ---------------DDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             ---------------SSEEEBTTCCEEEECBTTC
T ss_pred             ---------------CCeEECCCCCEEEEeCCCC
Confidence                           3688888887666554443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.18  E-value=0.0016  Score=58.00  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             eeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-CeEEEEeC
Q 015290          221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g~i~iwd~  297 (409)
                      ...+++.+.+..|+.+  ..+.|.+.++. ... ...+      +...-.....++++|.+..++.+-... +.|..+++
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~-~~~l------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAH-RKVL------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTT-SCS-CEEE------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCc-eEEe------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            3567888765555544  67788888876 222 2221      122234578999998762444444444 77888887


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      .....     ..+..            ......+.++|+|++..|..+. . +.|..+|+.
T Consensus       233 dG~~~-----~~~~~------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          233 DGSGR-----RIIAD------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             TSCSC-----EEEEC------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCCc-----EEEEE------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            65321     11111            0023467899999888777764 3 889999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.17  E-value=0.0038  Score=56.37  Aligned_cols=173  Identities=9%  Similarity=0.041  Sum_probs=86.7

Q ss_pred             eeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCce-eeeeecCCCcCcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEe
Q 015290          221 INSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVD  296 (409)
Q Consensus       221 v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd  296 (409)
                      ...++++| ++.++++- .++.|+.+|.. .+.. ...+..      +.......++|+|++ + ++++-...+.|..++
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~  301 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVD  301 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEEe
Confidence            45688999 56655555 78889999886 4443 222111      111233579999999 7 555555678899988


Q ss_pred             CCC--ccccccccccccccccccCCcc--cccccccceeeeEe---------ccCCCEEEEeec-CeEEEEEccCCCcce
Q 015290          297 MRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTPV  362 (409)
Q Consensus       297 ~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~---------s~~g~~l~sg~~-~~v~iwd~~~~~~~~  362 (409)
                      ...  +...  ....+...........  .....-.....+++         .++|.+.++-.. +.|+.++..  +. +
T Consensus       302 ~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G~-v  376 (433)
T 4hw6_A          302 YNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--GR-V  376 (433)
T ss_dssp             BCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--SE-E
T ss_pred             CCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--CC-E
Confidence            653  2210  0011111000000000  00000123567888         666665555444 889999853  54 3


Q ss_pred             EEEecccC---ccccccc-ccCCCCccceeeEEEc-CCCCeEEEcccCCC
Q 015290          363 ATFKIHEH---LRPKLCD-LYNNDSIFDKFECSVS-GDGLHFATGSYRRD  407 (409)
Q Consensus       363 ~~~~~~~~---~~~~~~~-~~~~~~~~~v~~~~~s-pdg~~l~s~s~dg~  407 (409)
                      ..+-+...   .-. ... +-..........++++ ++|.++++-..++.
T Consensus       377 ~t~~G~g~~~~~G~-~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r  425 (433)
T 4hw6_A          377 TTYAGRGNSREWGY-VDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR  425 (433)
T ss_dssp             EEEECCCTTCSSCC-BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred             EEEEeCCCCCcccc-CCCccccccEeCCCcEEEEECCCCEEEEEeCCCCE
Confidence            34433211   000 000 0001111224689999 67776666544443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.11  E-value=0.0089  Score=58.74  Aligned_cols=247  Identities=9%  Similarity=0.112  Sum_probs=141.9

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...|.++...++|++|..|+.++-|.+||..+++.                            ..+......      + 
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----------------------------~~~~~~~~~------l-  449 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----------------------------ENFNQRNSQ------L-  449 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----------------------------EEECTTTSC------C-
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----------------------------EEeecCCCC------c-
Confidence            36799999988888566787777799999876642                            111110000      0 


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      ....|.++..  .++|.+.+ |+.+ -+.+||..+++........ .+                                
T Consensus       450 ~~~~v~~i~~--d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~-~~--------------------------------  492 (795)
T 4a2l_A          450 VNENVYAILP--DGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEK-DG--------------------------------  492 (795)
T ss_dssp             SCSCEEEEEE--CSSSCEEE-EESS-CEEEEETTTTEEEECCBCT-TC--------------------------------
T ss_pred             CCCeeEEEEE--CCCCCEEE-EecC-ceeEEeCCCCeEEEccccc-cc--------------------------------
Confidence            0157888887  67776554 4444 4888898776554321100 00                                


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                      .      .-....|.++...++|...+... +-+..||.. .+..  .+.............|.
T Consensus       493 ----------------~------~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~-~~~~--~~~~~~~~~~l~~~~i~  546 (795)
T 4a2l_A          493 ----------------T------PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQE-GLDI--QKASILPVSNVTKLFTN  546 (795)
T ss_dssp             ----------------C------BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEE-TTEE--EECCCSCSCGGGGSCEE
T ss_pred             ----------------c------ccCCceEEEEEECCCCCEEEEeC-CceEEEeCC-CCeE--EEecCCCCCCCCCCeeE
Confidence                            0      11235688888888887555446 568888887 3433  22110000112346789


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEE
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  351 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~  351 (409)
                      ++..+++| .+.++.. . -|..||..+++.     ..+.. ..+      +  ....|.++...++|++.+++ .+.|.
T Consensus       547 ~i~~d~~g-~lWigT~-~-Gl~~~d~~~~~~-----~~~~~-~~g------l--~~~~i~~i~~d~~g~lWi~t-~~Gl~  608 (795)
T 4a2l_A          547 CIYEASNG-IIWVGTR-E-GFYCFNEKDKQI-----KRYNT-TNG------L--PNNVVYGILEDSFGRLWLST-NRGIS  608 (795)
T ss_dssp             EEEECTTS-CEEEEES-S-CEEEEETTTTEE-----EEECG-GGT------C--SCSCEEEEEECTTSCEEEEE-TTEEE
T ss_pred             EEEECCCC-CEEEEeC-C-CceeECCCCCcE-----EEeCC-CCC------C--chhheEEEEECCCCCEEEEc-CCceE
Confidence            99999998 7655443 4 478899876542     22221 000      0  02358888899999876666 46678


Q ss_pred             EEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       352 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      .||..+  ..+..+....+...         ..+...++...++|.+++. +.+|
T Consensus       609 ~~~~~~--~~~~~~~~~dGl~~---------~~f~~~~~~~~~~G~l~~g-~~~G  651 (795)
T 4a2l_A          609 CFNPET--EKFRNFTESDGLQS---------NQFNTASYCRTSVGQMYFG-GING  651 (795)
T ss_dssp             EEETTT--TEEEEECGGGTCSC---------SCEEEEEEEECTTSCEEEE-ETTE
T ss_pred             EEcCCC--CcEEEcCCcCCCcc---------ccCccCceeECCCCeEEEe-cCCc
Confidence            888763  44556654444321         0111135677788875554 4344

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.09  E-value=0.0015  Score=56.56  Aligned_cols=112  Identities=10%  Similarity=-0.003  Sum_probs=65.1

Q ss_pred             eeEEEeCCCCCeEEEe--cCCeEEEEEccCCC-ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---------
Q 015290          221 INSISNNSDCETFVSA--DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------  288 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---------  288 (409)
                      ...++++|+++.|+.+  ..+.|..|++.... .....+       ....+ ...++++++| ++.++...         
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~-------~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~  257 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL-------VKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGR  257 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE-------EECSS-EEEEEECTTS-CEEEEEEEETTSSTTSC
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE-------EeCCC-CCCeEECCCC-CEEEEecCcccccccCC
Confidence            4679999999877665  57899999987211 111221       01112 6789999999 77666544         


Q ss_pred             -CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       289 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                       .+.|..+|.. ++.    ...+.. ..+.        ....+..+++ .++++.++... +.|..+++.
T Consensus       258 ~~~~v~~~d~~-G~~----~~~~~~-~~g~--------~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          258 VDPKGIKFDEF-GNI----LEVIPL-PPPF--------AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEEEEECTT-SCE----EEEEEC-CTTT--------TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CccEEEEECCC-CCE----EEEEEC-CCCC--------ccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence             4668888864 332    122222 0000        0123555665 35555555444 889999876

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.08  E-value=0.0033  Score=60.26  Aligned_cols=166  Identities=13%  Similarity=0.013  Sum_probs=88.6

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc---ccccceeEEEecCC
Q 015290          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE---WTENMATKIANVGN  203 (409)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~  203 (409)
                      +..++.++.|+.|..+|..+++...............+..    ...+    . .+.++....   ...++.+..+|.++
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~----~P~v----~-~~~v~vg~~~~~~~~~g~v~a~D~~t  187 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITG----APRV----V-KGKVIIGNGGAEYGVRGFVSAYDADT  187 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCS----CCEE----E-TTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecC----CCEE----E-CCEEEEeCCCCCcCCCCEEEEEECCC
Confidence            4578888899999999999999887765421110000000    0000    0 111111110   11256777777765


Q ss_pred             cccceeeeeecc---------------------------ccccceeEEEeCCCCCeEEEe-cCC----------------
Q 015290          204 SVHARCQKVYPH---------------------------AHDFNINSISNNSDCETFVSA-DDL----------------  239 (409)
Q Consensus       204 ~~~~~~~~~~~~---------------------------~~~~~v~~l~~~~~~~~l~~~-~d~----------------  239 (409)
                      ..........-.                           +.......+++.|+...++.+ .++                
T Consensus       188 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l  267 (668)
T 1kv9_A          188 GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNL  267 (668)
T ss_dssp             CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             CcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence            332221111000                           011112346788888888877 665                


Q ss_pred             ---eEEEEEccCCCceeeeeecCCCcCcC--ccCceEEEEEeCCCCC---EEEEEeCCCeEEEEeCCCcccc
Q 015290          240 ---RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCN---LLAYSSSRGFVRLVDMRQSALC  303 (409)
Q Consensus       240 ---~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---~l~s~s~dg~i~iwd~~~~~~~  303 (409)
                         .|..+|.. +++.+..+.......-.  .........+..+| +   .++.++.+|.+.++|..++++.
T Consensus       268 ~~~~v~AlD~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          268 YLSSILAIRPD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDG-KPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeeEEEEcCC-CCceeeEeecCCCccccccCCCCcEEEEeccCC-cEEEEEEEECCCCEEEEEECCCCCEe
Confidence               38889988 66666554322110000  01223333334456 4   6889999999999999998753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.08  E-value=0.00017  Score=62.57  Aligned_cols=115  Identities=10%  Similarity=-0.063  Sum_probs=70.1

Q ss_pred             ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290          220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~  298 (409)
                      .+.++...+++. +..+ .++.|..+|..  +.....+.       .....+.++...+++ .+++. +  +.|..+| .
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~-------~~~~~~~~~~~d~~g-~l~v~-t--~~l~~~d-~  202 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFK-------TNDAITSAASIGKDG-TIYFG-S--DKVYAIN-P  202 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEE-------CSSCCCSCCEECTTC-CEEEE-S--SSEEEEC-T
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEe-------cCCCceeeeEEcCCC-EEEEE-e--CEEEEEC-C
Confidence            355566677776 4455 88999999987  44433321       123345667777777 65544 4  7789999 5


Q ss_pred             CccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecc
Q 015290          299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      +++.      .+.. .          .....+.++...++|.+.+...++.|..+|..  ++.+..+...
T Consensus       203 ~g~~------~~~~-~----------~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~  253 (330)
T 3hxj_A          203 DGTE------KWNF-Y----------AGYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTG  253 (330)
T ss_dssp             TSCE------EEEE-C----------CSSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECS
T ss_pred             CCcE------EEEE-c----------cCCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCC
Confidence            5442      1211 0          00235778888888876665556888888853  5666555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.06  E-value=0.0037  Score=58.66  Aligned_cols=80  Identities=15%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +|.|..||..+++..      +.. ..           ...+....+...+..++.++ ++.|+.||.++ ++.+..+..
T Consensus       443 ~g~l~a~D~~tG~~~------W~~-~~-----------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t-G~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAK------WTK-WE-----------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKD-GKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEE------EEE-EE-----------SSCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             CCeEEEEECCCCCEE------EEe-cC-----------CCCccceeEEECCCEEEEEcCCCeEEEEECCC-CCEEEEEeC
Confidence            477888888887642      222 00           11222333333455666676 59999999987 888888875


Q ss_pred             ccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      ......              .-+.+..+|+.++.
T Consensus       504 ~~~~~~--------------~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          504 PSGGIG--------------SPMTYSFKGKQYIG  523 (571)
T ss_dssp             SSCCCS--------------CCEEEEETTEEEEE
T ss_pred             CCCcEe--------------eeEEEEECCEEEEE
Confidence            543221              23556678875443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.03  E-value=0.013  Score=57.55  Aligned_cols=290  Identities=9%  Similarity=0.034  Sum_probs=151.8

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...|.++...++|.+.+ |+.+| |.+|+..++..                            ..+......   ...+.
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~----------------------------~~~~~~~~~---~~~l~  308 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSF----------------------------ASYSSNPVE---NGSLS  308 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEE----------------------------EEECCCTTS---TTSCS
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeE----------------------------EEEecCCCC---CCCCC
Confidence            46799999999887544 55554 88888765542                            111100000   00000


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                       ...|.++..  +++|. |-.|+.++-|..|+..++............       ......+.+......+.+. .|.. 
T Consensus       309 -~~~i~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~-------~l~~~~V~~i~~d~~g~lW-iGt~-  375 (795)
T 4a2l_A          309 -QRSVRSIFM--DSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKN-------SLSDNVVSCIVEDKDKNLW-IGTN-  375 (795)
T ss_dssp             -SSCEEEEEE--CTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSS-------SCSCSSEEEEEECTTSCEE-EEES-
T ss_pred             -CCcEEEEEE--eCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCC-------CCCCCeeEEEEECCCCCEE-EEEC-
Confidence             157999988  67774 556777677888887766543332111000       0011112222222222211 1211 


Q ss_pred             ccceeEEEecCCcccceeeeeecc--------ccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290          192 ENMATKIANVGNSVHARCQKVYPH--------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                       ++-+..++..+..    ...+..        -....|.++...++++.|..| .++-|..||.. .+..... ....  
T Consensus       376 -~~Gl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~-~~~~~~~-~~~~--  446 (795)
T 4a2l_A          376 -DGGLNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN-SGQVENF-NQRN--  446 (795)
T ss_dssp             -SSCEEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT-TCCEEEE-CTTT--
T ss_pred             -CCCeEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC-CCcEEEe-ecCC--
Confidence             3356666655421    111100        123568899988888845556 76779999987 4433222 1110  


Q ss_pred             CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      -......|.++...++| .+.+.. .+| |.+||..+++.     ..+.. ...+.     .-....|.++...++|++.
T Consensus       447 ~~l~~~~v~~i~~d~~g-~lwigt-~~G-l~~~~~~~~~~-----~~~~~-~~~~~-----~~~~~~i~~i~~d~~g~lW  512 (795)
T 4a2l_A          447 SQLVNENVYAILPDGEG-NLWLGT-LSA-LVRFNPEQRSF-----TTIEK-EKDGT-----PVVSKQITTLFRDSHKRLW  512 (795)
T ss_dssp             SCCSCSCEEEEEECSSS-CEEEEE-SSC-EEEEETTTTEE-----EECCB-CTTCC-----BCCCCCEEEEEECTTCCEE
T ss_pred             CCcCCCeeEEEEECCCC-CEEEEe-cCc-eeEEeCCCCeE-----EEccc-ccccc-----ccCCceEEEEEECCCCCEE
Confidence            01234578999999888 655544 444 88899877543     11111 00000     0012468899999999876


Q ss_pred             EEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       343 ~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      +... +.|..||..+ ++.  .+...... ..+       ....|.++..+++|.+.++.
T Consensus       513 igt~-~Gl~~~~~~~-~~~--~~~~~~~~-~~l-------~~~~i~~i~~d~~g~lWigT  560 (795)
T 4a2l_A          513 IGGE-EGLSVFKQEG-LDI--QKASILPV-SNV-------TKLFTNCIYEASNGIIWVGT  560 (795)
T ss_dssp             EEES-SCEEEEEEET-TEE--EECCCSCS-CGG-------GGSCEEEEEECTTSCEEEEE
T ss_pred             EEeC-CceEEEeCCC-CeE--EEecCCCC-CCC-------CCCeeEEEEECCCCCEEEEe
Confidence            6555 6788899864 333  33211000 000       00123578888888755443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.99  E-value=0.0013  Score=63.19  Aligned_cols=63  Identities=6%  Similarity=0.041  Sum_probs=42.5

Q ss_pred             CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +|.|..||+.+++..      |.. ..           ..+.....+...+.+++.++ ++.|+.||.++ ++.+..+..
T Consensus       437 ~g~l~A~D~~tG~~~------W~~-~~-----------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAA------WKV-PY-----------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEE------EEE-EE-----------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cceEEEEeCCCCcEE------EEc-cC-----------CCCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecC
Confidence            478999999888742      222 00           11233344555677888887 49999999986 888888876


Q ss_pred             ccC
Q 015290          368 HEH  370 (409)
Q Consensus       368 ~~~  370 (409)
                      ...
T Consensus       498 ~~~  500 (668)
T 1kv9_A          498 QSG  500 (668)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.97  E-value=0.0082  Score=53.33  Aligned_cols=121  Identities=7%  Similarity=-0.047  Sum_probs=69.9

Q ss_pred             cceeEEEeCCCCCeEEEe--cC-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      .....++++|.+..|+.+  .. +.|..+++.  +.....+      ....-.....|+++|++..++++-+..+.|..+
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRII------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEE------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEE------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            345789999877666655  44 678888876  3322221      122234578999998763455555567889999


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      |+.....    ......             .......+++. .+.++.+-.. +.|..+|..+ ++.+..+.
T Consensus       274 d~dG~~~----~~~~~~-------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~  326 (386)
T 3v65_B          274 NLDGSHR----KAVISQ-------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFT-GKNQEIIR  326 (386)
T ss_dssp             CTTSCSC----EEEECS-------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             eCCCCee----EEEEEC-------------CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC-CcceEEEc
Confidence            9865321    011111             01245667773 3333334333 8888888543 55555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.94  E-value=0.0031  Score=60.48  Aligned_cols=242  Identities=10%  Similarity=0.031  Sum_probs=120.2

Q ss_pred             EEEEECCCCCEEEEEe-cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           36 SAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      .++++.+++++++.|+ .+..+.+||..+.+-                         ..+..+....            .
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------------------------~~~~~~~~~R------------~  288 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------------------------IPGPDMQVAR------------G  288 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------------------------EECCCCSSCC------------S
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCce-------------------------eECCCCCccc------------c
Confidence            3567788999999998 445899999876542                         1111111111            1


Q ss_pred             ceEEEEEEecCCCCEEEEEe-CC-----CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          115 KINRVRWCAAPNGSMFILST-ND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      . .++..  -++++.++.|+ .+     ..+.+||..++...........+       ....... .+.......++..+
T Consensus       289 ~-~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p-------~~~~~~~-~~~~~~~~iyv~Gg  357 (656)
T 1k3i_A          289 Y-QSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP-------MLTADKQ-GLYRSDNHAWLFGW  357 (656)
T ss_dssp             S-CEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG-------GCCCCTT-GGGTTTCSCCEEEC
T ss_pred             c-cceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc-------ccccccc-ceeecCCceEEEEC
Confidence            1 22334  26888888888 44     57899999988766542111000       0000000 00001111111111


Q ss_pred             cc------cccceeEEEecCCcccceeeeeeccc------cccceeEEEeC-CCCCeEEEe-cCC-----------eEEE
Q 015290          189 EW------TENMATKIANVGNSVHARCQKVYPHA------HDFNINSISNN-SDCETFVSA-DDL-----------RINL  243 (409)
Q Consensus       189 ~~------~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~-~~~~~l~~~-~d~-----------~i~l  243 (409)
                      ..      .....+..||..+..-....... ..      ....-.++.+. .+++.++.| .++           .+.+
T Consensus       358 ~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~-~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~  436 (656)
T 1k3i_A          358 KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR-QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITL  436 (656)
T ss_dssp             GGGCEEECCSSSEEEEEECSTTCEEEEEEEC-EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEEC
T ss_pred             CCCcEEEecCccceeeeecCCcceeecCCcc-ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEc
Confidence            10      11336778887764322211111 00      01112344443 367777777 532           5777


Q ss_pred             EEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----------CeEEEEeCCCccccccccccccc
Q 015290          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRD  312 (409)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~  312 (409)
                      ||.. ........ .  ..+... ..-.++...|++ ++++.|+.+           ..+.+||..+++.     ..+..
T Consensus       437 yd~~-~~~W~~~~-~--~~mp~~-R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-----~~~~~  505 (656)
T 1k3i_A          437 GEPG-TSPNTVFA-S--NGLYFA-RTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-----YKQNP  505 (656)
T ss_dssp             CSTT-SCCEEEEC-T--TCCSSC-CBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-----EECCC
T ss_pred             CCCC-CCCeeEEc-c--CCCCCC-cccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCce-----eecCC
Confidence            8876 33322221 0  011111 112355667888 999998854           4688999876542     11111


Q ss_pred             cccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                         .+.       .........+.|+|+.++.|+.
T Consensus       506 ---~~~-------~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          506 ---NSI-------VRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ---CSS-------CCCTTEEEEECTTSCEEEEECC
T ss_pred             ---CCC-------ccccccHhhcCCCcEEEecCCC
Confidence               000       0112234456799999998863

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=0.023  Score=55.75  Aligned_cols=284  Identities=12%  Similarity=0.084  Sum_probs=150.5

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee-ecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE-FQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~  110 (409)
                      ...|.++...++|.+ ..|+.++-|..|+..++...                         .+.. -....         
T Consensus       362 ~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-------------------------~~~~~~~~~~---------  406 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI-------------------------YNKENRELLS---------  406 (781)
T ss_dssp             SSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE-------------------------CC-----CCC---------
T ss_pred             CcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE-------------------------EccCCCCCCC---------
Confidence            357999999988874 45665566888887654310                         0000 00111         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|.++..  .+++. |..|+.++-+..++..+++........           .....+......+.+.+. .+. 
T Consensus       407 ---~~v~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~-----------~~~~~v~~i~~d~~g~lw-igt-  467 (781)
T 3v9f_A          407 ---NSVLCSLK--DSEGN-LWFGTYLGNISYYNTRLKKFQIIELEK-----------NELLDVRVFYEDKNKKIW-IGT-  467 (781)
T ss_dssp             ---SBEEEEEE--CTTSC-EEEEETTEEEEEECSSSCEEEECCSTT-----------TCCCCEEEEEECTTSEEE-EEE-
T ss_pred             ---cceEEEEE--CCCCC-EEEEeccCCEEEEcCCCCcEEEeccCC-----------CCCCeEEEEEECCCCCEE-EEE-
Confidence               57888887  56665 555776667888888777654432100           011112222222222221 111 


Q ss_pred             cccceeEEEecCCcccceeeeeec--cccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                        .+-+..++..+..-.. .....  ......|.++...++|...+...++-+..||.. .+. +..+... .  .-...
T Consensus       468 --~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~~~-~--~l~~~  539 (781)
T 3v9f_A          468 --HAGVFVIDLASKKVIH-HYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD-MQL-VRKFNQY-E--GFCSN  539 (781)
T ss_dssp             --TTEEEEEESSSSSCCE-EECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT-CCE-EEEECTT-T--TCSCS
T ss_pred             --CCceEEEeCCCCeEEe-cccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC-CCe-EEEccCC-C--CCCCC
Confidence              1235566654421111 00000  011357889999988876665554447778876 333 3322111 0  11245


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~  348 (409)
                      .|.++..+++| .+.++. .+|.+..||..+++.     ..+.. ..+.        ....|.++...++|++.+++. +
T Consensus       540 ~i~~i~~d~~g-~lWi~T-~~Glv~~~d~~~~~~-----~~~~~-~~gl--------~~~~i~~i~~d~~g~lW~~t~-~  602 (781)
T 3v9f_A          540 TINQIYRSSKG-QMWLAT-GEGLVCFPSARNFDY-----QVFQR-KEGL--------PNTHIRAISEDKNGNIWASTN-T  602 (781)
T ss_dssp             CEEEEEECTTS-CEEEEE-TTEEEEESCTTTCCC-----EEECG-GGTC--------SCCCCCEEEECSSSCEEEECS-S
T ss_pred             eeEEEEECCCC-CEEEEE-CCCceEEECCCCCcE-----EEccc-cCCC--------CCceEEEEEECCCCCEEEEcC-C
Confidence            78999999988 665544 466558888876542     22222 0000        023577888899998776654 4


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      .|..+|..  ...+..+....+...         ..+...++...++|.+++. +.+|
T Consensus       603 Gl~~~~~~--~~~~~~~~~~dGl~~---------~~f~~~~~~~~~~G~l~~g-~~~G  648 (781)
T 3v9f_A          603 GISCYITS--KKCFYTYDHSNNIPQ---------GSFISGCVTKDHNGLIYFG-SING  648 (781)
T ss_dssp             CEEEEETT--TTEEEEECGGGTCCS---------SCEEEEEEEECTTSCEEEE-ETTE
T ss_pred             ceEEEECC--CCceEEecccCCccc---------cccccCceEECCCCEEEEE-CCCc
Confidence            47778876  345556654433211         1111135667788876554 4444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.79  E-value=0.00024  Score=69.28  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=71.3

Q ss_pred             ceeEEEeC-CCCCeEEEe--cCC----eEEEEEccCCC-ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC--
Q 015290          220 NINSISNN-SDCETFVSA--DDL----RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--  289 (409)
Q Consensus       220 ~v~~l~~~-~~~~~l~~~--~d~----~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--  289 (409)
                      .+...+|| |||++|+.+  .+|    .|+++|+. ++ +.+..      .+.   ....+++|+||| +.|+....+  
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~-~g~~~l~~------~~~---~~~~~~~WspDg-~~l~y~~~d~~  243 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS-DPSQTIAD------KVS---GTNGEIVWGPDH-TSLFYVTKDET  243 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT-CTTCCCCC------CEE---EECSCCEECSST-TEEEEEEECTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC-CCCEeCCc------ccc---CceeeEEEecCC-CEEEEEEECCC
Confidence            56788999 999999865  233    49999998 44 32110      011   123468999999 777766654  


Q ss_pred             ---CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee---c-CeEEEEEccC
Q 015290          290 ---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRM  357 (409)
Q Consensus       290 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~---~-~~v~iwd~~~  357 (409)
                         ..|.++++.++....  ..++..            ........+.|||||++|+...   . ..|+++|+..
T Consensus       244 ~~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence               257778876643210  111211            0012356789999999988543   2 6788899875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.78  E-value=0.016  Score=50.64  Aligned_cols=121  Identities=7%  Similarity=-0.047  Sum_probs=68.9

Q ss_pred             cceeEEEeCCCCCeEEEe--cC-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      .....++++|.+..|+.+  .. +.|..+++.  +.....+      ....-.....++++|++..++++-...+.|..+
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRII------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEES------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEE------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            345789999976666654  44 778888876  3322221      122234578999998762455555567889999


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      |+.....    ......             .......+++. .+.+..+-.. +.|..+|..+ ++....+.
T Consensus       231 ~~dG~~~----~~~~~~-------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~  283 (349)
T 3v64_C          231 NLDGSHR----KAVISQ-------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFT-GKNQEIIR  283 (349)
T ss_dssp             ETTSCSC----EEEECS-------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             eCCCCce----EEEEeC-------------CCCCceEEEEE-CCEEEEecCCCCeEEEEEccC-CCccEEec
Confidence            9865321    011111             01235667773 3333333333 8888888543 55444443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.69  E-value=0.024  Score=53.28  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      +|.|..||+.+++..      |+. ..           ..++..-.....+.+++.|+ |+.++.||.++ ++.+-.++.
T Consensus       465 ~G~l~A~D~~tG~~~------W~~-~~-----------~~~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVV------WEH-KE-----------HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEE------EEE-EE-----------SSCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cceEEEEECCCCCEE------EEe-cC-----------CCCCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecC
Confidence            578889999888642      322 10           01222222222456777776 59999999987 898888876


Q ss_pred             ccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      ......              .-+.|..||+..+
T Consensus       526 ~~g~~a--------------~P~~y~~~G~qYv  544 (582)
T 1flg_A          526 GSGIVS--------------PPITWEQDGEQYL  544 (582)
T ss_dssp             SSCCCS--------------CCEEEEETTEEEE
T ss_pred             CCCccc--------------CceEEEECCEEEE
Confidence            554321              1367777887433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.66  E-value=0.0073  Score=54.53  Aligned_cols=113  Identities=12%  Similarity=-0.006  Sum_probs=64.7

Q ss_pred             cceeEEEeCCCCCeEEEecCC-----eEEEEEccCCCcee-eeeecCCCcCcCccCceEEEEEeC-CCCCEEEEEeCCCe
Q 015290          219 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGF  291 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~~d~-----~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~s~dg~  291 (409)
                      .....++++++++++++...+     .+...+.. ..... ..       +. .-.....++++| ++ .++++-..++.
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~  251 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAM  251 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSE
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCE
Confidence            346789999999944443321     13333322 11110 11       11 123456788999 66 76666667788


Q ss_pred             EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      |+.+|..++....   ..+..   ..         ...-..++|+|+|++|..+. . +.|+.+++.
T Consensus       252 V~~~d~~~g~~~~---~~~~~---~~---------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          252 ISSYDPATGTLTE---EEVMM---DT---------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEECTTTCCEEE---EEEEC---SC---------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEEECCCCeEEE---EEecc---CC---------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            9999987654210   11111   00         11234699999999776664 3 899998865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.65  E-value=0.023  Score=48.83  Aligned_cols=122  Identities=7%  Similarity=-0.025  Sum_probs=69.4

Q ss_pred             ceeEEEeCCCCCeEEEe--cC-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          220 NINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ....++++|.+..|+.+  .. +.|...++.  +.....+      ....-.....++++|++..++++-+..+.|..+|
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~------~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d  192 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  192 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEE------EECCCCCceEEEEeccCCEEEEEECCCCeEEEEe
Confidence            45789999876666554  33 688888876  3333322      1112346789999988724445555667899999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      +.....     +.+.. . .        ........+++.. +.++.+-.. +.|..+|..+ ++.+..+.
T Consensus       193 ~dg~~~-----~~~~~-~-~--------~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~-g~~~~~i~  246 (316)
T 1ijq_A          193 VNGGNR-----KTILE-D-E--------KRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT-GSDVNLLA  246 (316)
T ss_dssp             TTSCSC-----EEEEE-C-T--------TTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred             cCCCce-----EEEee-c-C--------CccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCC-CcceEEEe
Confidence            875321     22211 0 0        0012345677753 333333334 8999998754 55444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.64  E-value=0.025  Score=48.89  Aligned_cols=153  Identities=9%  Similarity=0.015  Sum_probs=82.6

Q ss_pred             ccceeEEEeCCCCCeEEEecCCeEE-EEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          218 DFNINSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ...+..+++.+++.+++.+.++.+. -+|-.  +.....+.      ......+..+.+.+++ .+++ ++.+|.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~------~~~~~~~~~~~~~~~g-~~~~-~~~~G~~~~s~  231 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHN------RTTSRRLHNMGFTPDG-RLWM-IVNGGKIAFSD  231 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEE------CCSSSCEEEEEECTTS-CEEE-EETTTEEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECC------CCCCCccceeEECCCC-CEEE-EeCCceEEEec
Confidence            3457788999998888888444443 33421  22222221      1234568899999988 6554 45678777764


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  376 (409)
                      ...++       .|.. ...+..     .....+..+++.+++.+++++.++.| ++..+ .++.-..+........   
T Consensus       232 ~D~G~-------tW~~-~~~~~~-----~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~D-gG~tW~~~~~~~~~~~---  293 (327)
T 2xbg_A          232 PDNSE-------NWGE-LLSPLR-----RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQD-GGQTWQQDVDVKKVPS---  293 (327)
T ss_dssp             TTEEE-------EECC-CBCTTS-----SCCSCEEEEEESSSSCEEEEESTTCE-EEESS-TTSSCEECGGGTTSSS---
T ss_pred             CCCCC-------eeEe-ccCCcc-----cCCcceEEEEecCCCEEEEEeCCCeE-EEeCC-CCcccEEcCccCCCCC---
Confidence            33232       1211 000000     00135788899998888888877766 34433 2544444432211000   


Q ss_pred             cccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          377 DLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                            .   +.++.|.++++.+ .++.+|.|
T Consensus       294 ------~---~~~v~~~~~~~~~-~~G~~G~i  315 (327)
T 2xbg_A          294 ------N---FYKILFFSPDQGF-ILGQKGIL  315 (327)
T ss_dssp             ------C---CCEEEEEETTEEE-EECSTTEE
T ss_pred             ------C---eEEEEEECCCceE-EEcCCceE
Confidence                  0   1478887666544 44556643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.63  E-value=0.025  Score=48.58  Aligned_cols=110  Identities=12%  Similarity=0.088  Sum_probs=69.0

Q ss_pred             eeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe--CCCeEEEEe
Q 015290          221 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVD  296 (409)
Q Consensus       221 v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s--~dg~i~iwd  296 (409)
                      ...+++.+.+..|+. - ..+.|.++++. . .....+      ..........++++|.+ ..|+...  ..+.|...+
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~d-G-~~~~~l------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLD-G-SLRKVL------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETT-S-CSCEEE------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECC-C-CcEEEE------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEE
Confidence            467888875555544 4 67899999987 3 222222      12233456899999976 4444443  357788888


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      +.....     ..+-.            ..-...+.++++|++..|..+. . +.|..+|+.
T Consensus       152 ~dG~~~-----~~~~~------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          152 MDGSSR-----FIIIN------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             TTSCSC-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCCe-----EEEEE------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence            764321     11111            0013467899999888777765 4 899999986

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.61  E-value=0.029  Score=48.78  Aligned_cols=145  Identities=12%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             ceeEEEeCC--CCC-eE-EEe-c--CCeEEEEEccCCCceeeeeecCCCcCcC-ccCceEEEEEeCCCCCEEEEEeC---
Q 015290          220 NINSISNNS--DCE-TF-VSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS---  288 (409)
Q Consensus       220 ~v~~l~~~~--~~~-~l-~~~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~---  288 (409)
                      ....+.+.+  ++. +| ++- .  +.+|.+|++...+.....+.    ++.+ .-...+.+.+.++| .+.++...   
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft  187 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI  187 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence            445566544  343 34 332 3  67888988874333322211    0111 22457899999999 76666531   


Q ss_pred             --------------CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEE
Q 015290          289 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL  352 (409)
Q Consensus       289 --------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~i  352 (409)
                                    .|.|..+|.  ++.     +.+..             .-...+.++|+||++.|..+. . +.|..
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~--~~~-----~~~~~-------------~l~~pNGia~spDg~~lYvadt~~~~I~~  247 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSP--NDV-----RVVAE-------------GFDFANGINISPDGKYVYIAELLAHKIHV  247 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECT--TCC-----EEEEE-------------EESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CcccccchhhccCCccEEEEEEC--CeE-----EEeec-------------CCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence                          233444443  211     11111             123568899999999888775 3 99999


Q ss_pred             EEccCCCcce--EEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcccC
Q 015290          353 WDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYR  405 (409)
Q Consensus       353 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s~d  405 (409)
                      |++..+++..  ..+.....+                -.+++.+ +|.+.+++..+
T Consensus       248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESC
T ss_pred             EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCC
Confidence            9987434321  223111111                3788888 58877655433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.59  E-value=0.029  Score=48.22  Aligned_cols=118  Identities=8%  Similarity=-0.039  Sum_probs=72.1

Q ss_pred             eeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-CeEEEEeC
Q 015290          221 INSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g~i~iwd~  297 (409)
                      ...+++.+.+..|+ +- ..+.|.+.++. .......       ..........++++|.+..++.+.... +.|...++
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~-------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~  150 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEE-------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence            46788887555554 44 78899999987 3322222       111224568999999662444444333 67888887


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~  365 (409)
                      .....     +.+..            ..-.....++++|++..|..+. . +.|..+|+.  +.....+
T Consensus       151 dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~  201 (316)
T 1ijq_A          151 NGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTI  201 (316)
T ss_dssp             TSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEE
T ss_pred             CCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEE
Confidence            54321     11111            0023578899999888877765 3 899999986  4444444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.59  E-value=0.045  Score=51.51  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-EEE
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FAT  401 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~s  401 (409)
                      .+.+++.++ |+.++.||.++ ++.+-.++.......              .-+.|..||+. +++
T Consensus       483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g~~~--------------~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSGAIG--------------YPMTYTHKGTQYVAI  533 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCCcEe--------------ccEEEEeCCEEEEEE
Confidence            456677776 59999999987 888888765443321              23666678874 443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.069  Score=52.31  Aligned_cols=296  Identities=9%  Similarity=0.073  Sum_probs=141.9

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (409)
                      ..|.++...++|.+.+ |+.+ -+.+||..++..                            ..+......   ...+ .
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~----------------------------~~~~~~~~~---~~~l-~  256 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF----------------------------TNFHNNPGN---IHGA-L  256 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE----------------------------EC---------------C
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE----------------------------EEEEcCCCc---cccc-c
Confidence            5689999988887655 4445 588888765542                            001000000   0000 0


Q ss_pred             ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc-cccccccccccCceeccCCCCCceeeccccc
Q 015290          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      ...|.++..  ..+| .|..|+..+-|.+++..++.........+... ............+.+......+.+ -.+.. 
T Consensus       257 ~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~-  331 (781)
T 3v9f_A          257 SSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTW-  331 (781)
T ss_dssp             CCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEB-
T ss_pred             CceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEec-
Confidence            157888887  5666 55566664558888887765433221000000 000000011111222222222211 11111 


Q ss_pred             ccceeEEEecCCcccceeeee-----eccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          192 ENMATKIANVGNSVHARCQKV-----YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                       ++-+..++.....-......     ...-....|.++...+++...+...++-|..||.. .+. ...+. .+  ....
T Consensus       332 -~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~-~~--~~~~  405 (781)
T 3v9f_A          332 -GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG-KRV-AIYNK-EN--RELL  405 (781)
T ss_dssp             -SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT-EEE-EECC--------CC
T ss_pred             -CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC-CCe-EEEcc-CC--CCCC
Confidence             33455555443111000000     00112356889998888865544466678888876 322 22110 00  1123


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|.++...+++ .+.+ |+.++-|..+|..+++.     ..+.. .         ......|.++...++|.+.+...
T Consensus       406 ~~~v~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~~~~-----~~~~~-~---------~~~~~~v~~i~~d~~g~lwigt~  468 (781)
T 3v9f_A          406 SNSVLCSLKDSEG-NLWF-GTYLGNISYYNTRLKKF-----QIIEL-E---------KNELLDVRVFYEDKNKKIWIGTH  468 (781)
T ss_dssp             CSBEEEEEECTTS-CEEE-EETTEEEEEECSSSCEE-----EECCS-T---------TTCCCCEEEEEECTTSEEEEEET
T ss_pred             CcceEEEEECCCC-CEEE-EeccCCEEEEcCCCCcE-----EEecc-C---------CCCCCeEEEEEECCCCCEEEEEC
Confidence            4678999988887 6555 56666788999876543     11111 0         00124688888888887655444


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                       +.|..||..+ ++............          ....|.++...++|.+.+..
T Consensus       469 -~Gl~~~~~~~-~~~~~~~~~~~~~~----------~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          469 -AGVFVIDLAS-KKVIHHYDTSNSQL----------LENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             -TEEEEEESSS-SSCCEEECTTTSSC----------SCSCEEEEEECTTCCEEEEE
T ss_pred             -CceEEEeCCC-CeEEecccCccccc----------ccceeEEEEEcCCCCEEEEE
Confidence             6789999864 33322221110000          00113578888888765543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.56  E-value=0.033  Score=48.12  Aligned_cols=117  Identities=7%  Similarity=0.053  Sum_probs=66.2

Q ss_pred             ccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      ...+..+++.++++.++.+.+|.+++.+.. .+.....+...  .+ .....+.++.+.+++ .+++.+. +|.| .+..
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~tW~~~~~~--~~-~~~~~~~~v~~~~~~-~~~~~g~-~g~i-~~S~  276 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSENWGELLSP--LR-RNSVGFLDLAYRTPN-EVWLAGG-AGAL-LCSQ  276 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETT-EEEEECCCBCT--TS-SCCSCEEEEEESSSS-CEEEEES-TTCE-EEES
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCC-CCCeeEeccCC--cc-cCCcceEEEEecCCC-EEEEEeC-CCeE-EEeC
Confidence            345678888898887766677887776422 23332221100  00 122358899999877 7666654 6655 3344


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  355 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~  355 (409)
                      ..++       .|..-...       ......+.++.|.+++++++.|.+|.|.-++-
T Consensus       277 DgG~-------tW~~~~~~-------~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          277 DGGQ-------TWQQDVDV-------KKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             STTS-------SCEECGGG-------TTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CCCc-------ccEEcCcc-------CCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            4442       12210000       00123577888887777777777787776653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.56  E-value=0.036  Score=48.46  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~   60 (409)
                      ..-..|+|.|+|++++ +..+|.|.+++
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE
Confidence            3567999999998555 55679999988

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.55  E-value=0.033  Score=47.88  Aligned_cols=120  Identities=5%  Similarity=-0.046  Sum_probs=68.2

Q ss_pred             cceeEEEeCCCCCeEEEe-c--CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      .....++++|.+..|+.+ .  .+.|...++.  +.....+      ....-.....++++|++..++.+=+..+.|..+
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFII------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEE------EECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            345788999876666554 2  5678777776  3322221      112234568999999762455555567889999


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEE
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~  365 (409)
                      |+......    .....             .......+++..+ .++.+-.. +.|..+|..+ ++....+
T Consensus       194 d~dG~~~~----~~~~~-------------~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~-G~~~~~i  245 (318)
T 3sov_A          194 NLDGTNRQ----AVVKG-------------SLPHPFALTLFED-ILYWTDWSTHSILACNKYT-GEGLREI  245 (318)
T ss_dssp             ETTSCSCE----EEECS-------------CCSCEEEEEEETT-EEEEEETTTTEEEEEETTT-CCSCEEE
T ss_pred             cCCCCceE----EEecC-------------CCCCceEEEEeCC-EEEEEecCCCeEEEEECCC-CCceEEE
Confidence            98753210    11111             0123456676533 33333333 8899999864 5544444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.48  E-value=0.089  Score=51.22  Aligned_cols=120  Identities=8%  Similarity=-0.068  Sum_probs=74.8

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw  295 (409)
                      .....|++.+.++.|+.+  ..+.|.+.++. .. ...++      +.........|+++|.+..++.+-.. .+.|...
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~-~~~~l------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GV-KRKTL------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SS-SEEEE------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCC-CC-eEEEE------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            345678898877666655  78899999987 33 33332      22223457899999975244444322 3678888


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~  365 (409)
                      ++.....     ..+-.            ..-.....|++++.+..|+.+. . +.|...++.  +.....+
T Consensus       543 ~~dG~~~-----~~lv~------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v  595 (791)
T 3m0c_C          543 GLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTI  595 (791)
T ss_dssp             ETTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEE
T ss_pred             ecCCCce-----EEEEe------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEE
Confidence            8865432     11111            0023578899998888777775 3 889999986  4444444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=0.0044  Score=55.96  Aligned_cols=141  Identities=9%  Similarity=0.039  Sum_probs=79.2

Q ss_pred             ceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CC----eE
Q 015290          220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----FV  292 (409)
Q Consensus       220 ~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg----~i  292 (409)
                      ....|+++| ++..|+.+ ..+.|+.+|+. .+......       . .......++|++++ ++|+.+.. ++    .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~-------~-~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY-------S-GLSKVRTICWTHEA-DSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE-------C-CCSCEEEEEECTTS-SEEEEEECCSCTTSEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe-------c-CCCCcceEEEeCCC-CEEEEEeCCCCcccceE
Confidence            457899998 45566666 44888899987 44333321       1 33457899999999 74444443 22    23


Q ss_pred             EEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeec-CeEEEEEccCCCcceEEEecccC
Q 015290          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                      .+++ ..+....  ...+..              ......++++| +|.++++-.. +.|..++... +...........
T Consensus       208 ~~~~-~~g~~~~--~~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~  269 (430)
T 3tc9_A          208 YILT-RESGFKV--ITELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDS  269 (430)
T ss_dssp             EEEE-GGGTSCS--EEEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSS
T ss_pred             EEEe-CCCceee--eeeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCC
Confidence            3333 2222110  011111              12467789999 5655555434 8999999863 332122221111


Q ss_pred             cccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      ..+              ..++|+|+|++|..+
T Consensus       270 ~~P--------------~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          270 GWE--------------FHIQFHPSGNYAYIV  287 (430)
T ss_dssp             SCC--------------EEEEECTTSSEEEEE
T ss_pred             Ccc--------------eeEEEcCCCCEEEEE
Confidence            111              589999999955443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.46  E-value=0.0014  Score=63.16  Aligned_cols=120  Identities=8%  Similarity=-0.019  Sum_probs=67.3

Q ss_pred             eeEEEeCCCCCeEEEe--cC-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          221 INSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      ...++++|.+.+|+.+  .. +.|..+++.  +....++      ....-.....|+|+|++..++++-+..+.|..+|+
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEE------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEE------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            4678899876666554  23 677777765  3222221      11122345789999986356666667788999998


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ec-CeEEEEEccCCCcceEEEe
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      .....     +.+.. .         .........+++..+  .|+.. .. +.|..+|..+ ++.+..+.
T Consensus       570 dG~~~-----~~~~~-~---------~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~-G~~~~~i~  622 (699)
T 1n7d_A          570 NGGNR-----KTILE-D---------EKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT-GSDVNLLA  622 (699)
T ss_dssp             SSSCC-----EEECC-C---------SSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT-EEEEECCC
T ss_pred             CCCce-----EEEEe-c---------CCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC-CCceEEee
Confidence            65321     11111 0         000122345666544  44433 34 8999999764 55555553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.44  E-value=0.057  Score=48.08  Aligned_cols=120  Identities=8%  Similarity=-0.059  Sum_probs=73.3

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw  295 (409)
                      .....+++.+.+..|+.+  ..+.|.+.++. .......       +...-.....++++|.+..++.+-.. .+.|...
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l-------~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEE-------EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEE-------EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence            345788888755555544  67889999887 3332222       12223457899999976244444322 4678888


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~  365 (409)
                      ++.....     ..+-.            ..-.....+++++++..|..+. . +.|..+|+.  +.....+
T Consensus       231 ~~dG~~~-----~~~~~------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~  283 (400)
T 3p5b_L          231 GLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTI  283 (400)
T ss_dssp             ETTSCSC-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEE
T ss_pred             eCCCCcc-----EEEEE------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEE
Confidence            8765331     11111            0013578899999888888775 3 889999986  4444333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.42  E-value=0.018  Score=49.03  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=52.4

Q ss_pred             ceeEEEeCCCCCeEEEe-cC-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          220 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      ....++..++|+..+++ .. +.|...+..  +.....+..... ........+.++++|+| ++|+.....|.|..+|+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~-~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESG-NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCC-CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCC-CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence            46889999999999988 66 777666665  333333322211 11223346799999999 77777766999999998


Q ss_pred             CC
Q 015290          298 RQ  299 (409)
Q Consensus       298 ~~  299 (409)
                      +.
T Consensus       214 ~~  215 (334)
T 2p9w_A          214 SK  215 (334)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.35  E-value=0.13  Score=50.13  Aligned_cols=120  Identities=10%  Similarity=0.007  Sum_probs=68.2

Q ss_pred             ceeEEEeCCCCCeEEEe--cC-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          220 NINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ....|+++|.+.+|+.+  .. +.|...++.  +....++      +...-.....|++++.+..++++-...+.|...+
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~l------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d  586 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  586 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEE------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            46789999976666654  33 678888887  3333332      2223356789999987624444445567899999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~  365 (409)
                      +......    .+... .          ..-....+|++.  +.+|+... . +.|...|..+ ++.+..+
T Consensus       587 ~dG~~~~----~v~~~-~----------~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t-G~~~~~l  639 (791)
T 3m0c_C          587 VNGGNRK----TILED-E----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLL  639 (791)
T ss_dssp             TTSCSCE----EEEEC-T----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEE
T ss_pred             cCCCceE----EEecC-C----------CccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC-CcceEEe
Confidence            8654321    11111 0          001123456654  34555554 3 8888888654 5544444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.35  E-value=0.066  Score=46.77  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=21.2

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~   60 (409)
                      .....|+|.|+|++++ +..+|.|.+++
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence            4568999999998554 56679999887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.31  E-value=0.082  Score=47.07  Aligned_cols=121  Identities=7%  Similarity=-0.021  Sum_probs=67.8

Q ss_pred             ceeEEEeCCCCCeEEEe--c-CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          220 NINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ....|+++|.+..|+.+  . .+.|...++.  +.....+      ....-.....|+++|++..++.+-...+.|..+|
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d  274 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  274 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEE------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence            45789999976666654  2 4678888877  3322221      1222346789999988724444445567899999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE-Eeec-CeEEEEEccCCCcceEEEe
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      +.....     +.+.. .         .+.......+++.  +..|. +-.. +.|..+|..+ ++.+..+.
T Consensus       275 ~dG~~~-----~~~~~-~---------~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~-G~~~~~i~  328 (400)
T 3p5b_L          275 VNGGNR-----KTILE-D---------EKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLA  328 (400)
T ss_dssp             TTSCCC-----EEEEE-C---------SSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred             CCCCcc-----EEEEe-C---------CCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence            865432     11111 0         0001234466663  33444 3334 8888888654 54444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.29  E-value=0.2  Score=51.09  Aligned_cols=34  Identities=9%  Similarity=0.027  Sum_probs=28.0

Q ss_pred             CCcEEEEEECCC------CCEEEEEec-CCeEEEEeccCCc
Q 015290           32 VDIVSAIEFDKT------GDYLAVGDR-GGRVILFETVGGK   65 (409)
Q Consensus        32 ~~~v~~v~~~~~------~~~la~~~~-dg~i~iw~~~~~~   65 (409)
                      .+.|.|+++.|.      ++++|+|.. |++|+|+++.+.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            457999999873      479999996 9999999998643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.28  E-value=0.049  Score=47.98  Aligned_cols=125  Identities=12%  Similarity=0.143  Sum_probs=77.4

Q ss_pred             ceeEEEeCCCCCeEEEecCCeEEEEEccCCCc-----------eeeeeecCCCcCcCccCceEEEEEeCCCC--CEEEEE
Q 015290          220 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS  286 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~  286 (409)
                      .|..+..+|+|++||...+..|.|-.+.....           ..+.+.+.+.+ ......|..+.|+|-+.  ..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence            56779999999999988777899888872110           01123222211 11357899999999863  388889


Q ss_pred             eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE--eec-CeEEE
Q 015290          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--RDY-MNLKL  352 (409)
Q Consensus       287 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s--g~~-~~v~i  352 (409)
                      ..|+.|++||+......  +. .+.. ..   ..-.+......|.+++|.+++-.|..  .+. |.|+-
T Consensus       146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEK--PI-VLNK-PN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTSC--CE-EESC-CC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCCC--Cc-chhc-cc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99999999999863211  11 2221 00   00011223367889999998765544  334 77654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.28  E-value=0.086  Score=46.59  Aligned_cols=210  Identities=8%  Similarity=0.108  Sum_probs=114.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (409)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (409)
                      +|..+.++.-. ..++.|+|+++....+...+.-             ..++.-..++..-     ....+..|.-|+++.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e-------------~VvfWkWis~~~l-----~lVT~taVyHWsi~~  134 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------DVTFWKWISLNTV-----ALVTDNAVYHWSMEG  134 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------CCCEEEEEETTEE-----EEECSSEEEEEESSS
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------CceEEEecCCCeE-----EEEcCCeeEEecccC
Confidence            35555665554 5788888888876655433211             0111000000000     112255788888875


Q ss_pred             cccceeeeeecccc----ccceeEEEeCCCCCeEEE-e---c----CCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          204 SVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       204 ~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~-~---~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                        ...+.+.| ..|    ...|..-..+++.++++. |   .    .|.+.+|..+  +...+.       +.+|.....
T Consensus       135 --~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~-------ieGhaa~F~  202 (494)
T 1bpo_A          135 --ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQP-------IEGHAASFA  202 (494)
T ss_dssp             --SCCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEE-------ECCSEEEEE
T ss_pred             --CCCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccch-------heeeeeeeE
Confidence              23455554 333    345667777899998874 3   2    4677899988  333333       578876655


Q ss_pred             EEEEeCCC--CCEEEEEeC---CCeEEEEeCCCccccc--cccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          272 SAEFHPIY--CNLLAYSSS---RGFVRLVDMRQSALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       272 ~~~~~p~~--~~~l~s~s~---dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      .+.+.-+.  .++|+.+..   .+.++|.++.......  -..+..+. ...|.      .-.+-..++..|+.-..+..
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe------~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------STTCCEEEEEEETTTTEEEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee-eCCcc------cccCceeEEEecccCCEEEE
Confidence            54443211  134555544   3789999985431000  00011111 00000      01233456888888777777


Q ss_pred             eec-CeEEEEEccCCCcceEEEecccCcc
Q 015290          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (409)
Q Consensus       345 g~~-~~v~iwd~~~~~~~~~~~~~~~~~~  372 (409)
                      -+. |.|++||+.+ +.++..-+-....+
T Consensus       276 iTK~G~i~lyDleT-gt~i~~nrIs~~~i  303 (494)
T 1bpo_A          276 ITKYGYIHLYDLET-GTCIYMNRISGETI  303 (494)
T ss_dssp             EETTSEEEEEETTT-CCEEEEEECCSSCE
T ss_pred             EecCceEEEEeccc-ceeeeeecccCCce
Confidence            776 9999999997 77776655444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.24  E-value=0.0075  Score=58.07  Aligned_cols=111  Identities=7%  Similarity=-0.045  Sum_probs=64.9

Q ss_pred             eeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-CeEEEEeC
Q 015290          221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM  297 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g~i~iwd~  297 (409)
                      ...|++.+.+..|+.+  ..+.|.++++. ... ..++      +.........++++|.+..++++-... +.|.++++
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~-~~~l------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVK-RKTL------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCC-EEEE------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecC-CCc-eEEE------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            3567888655555544  67889999887 332 2222      121223457889998762444443222 67777776


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      .....     +.+..            ..-...+.|+|+|++..|..+. . +.|..+++.
T Consensus       527 dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          527 NGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             SSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             CCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            54321     11111            0013467899999877776664 3 889999986

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.22  E-value=0.14  Score=47.96  Aligned_cols=29  Identities=7%  Similarity=0.094  Sum_probs=23.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEM  155 (409)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  155 (409)
                      +..++.++.|+.+..+|..+++.......
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~  143 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEV  143 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence            45788888899999999999988776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.1  Score=47.51  Aligned_cols=124  Identities=16%  Similarity=0.084  Sum_probs=68.1

Q ss_pred             ceeEEEe-------CCCCCeEEEe-cCC-------eEEEEEccCCCcee-----eeeecCCCcCcCccCceEEEEEeCCC
Q 015290          220 NINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY  279 (409)
Q Consensus       220 ~v~~l~~-------~~~~~~l~~~-~d~-------~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (409)
                      ....++|       +++++.|+++ ..+       .|.+.+....+...     ..+       ... .....++++|++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~~p~giavdp~~  258 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-KQCNGATIHPIN  258 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-SCCCCEEECTTT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-CCceEEEEcCCC
Confidence            4678999       9999977666 332       25566544212221     121       111 234577889955


Q ss_pred             CCEEEEEeCCCeEEEEeCC-------CccccccccccccccccccCCcccc-cccccceeeeEeccCCCEEEEee-c-Ce
Q 015290          280 CNLLAYSSSRGFVRLVDMR-------QSALCDHSARILRDAAESHGSKSFF-TEIIASISDIKFANDGQHLLSRD-Y-MN  349 (409)
Q Consensus       280 ~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~sg~-~-~~  349 (409)
                      ..++++-..++.|..+|+.       ++... .+......   . .....+ .+.......++|+|+|++|..+. . ..
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~-tp~~~~~~---g-~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~  333 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSW-DPIVKNNP---N-TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY  333 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCC-CCBGGGCT---T-TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceee-cccccccc---c-ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE
Confidence            3667777788889999987       43320 00000000   0 000000 00123457899999999766664 3 88


Q ss_pred             EEEEEcc
Q 015290          350 LKLWDIR  356 (409)
Q Consensus       350 v~iwd~~  356 (409)
                      |+.++..
T Consensus       334 I~kid~d  340 (496)
T 3kya_A          334 FMRSDYD  340 (496)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            9887764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.20  E-value=0.036  Score=47.22  Aligned_cols=173  Identities=9%  Similarity=0.006  Sum_probs=94.5

Q ss_pred             ccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc-cCceEEEEE---eCCCCCEEEEEe--
Q 015290          216 AHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF---HPIYCNLLAYSS--  287 (409)
Q Consensus       216 ~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~---~p~~~~~l~s~s--  287 (409)
                      .......+++|++. +.++++. ..++|..||.. .+....+ ........+- ...+..+.|   .|++ .++++..  
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~   86 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA   86 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence            33444567899875 4455555 89999999987 3433332 1111000011 124579999   6887 7777543  


Q ss_pred             -----------CCCeEEEEeCC---CccccccccccccccccccCCcccccc-cccceeeeEeccCCCEEEEee-c-CeE
Q 015290          288 -----------SRGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD-Y-MNL  350 (409)
Q Consensus       288 -----------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~sg~-~-~~v  350 (409)
                                 .+..|..||+.   +++..    ........... .....+ -......++..++|+.-++++ . +.|
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~-~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDE-FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI  161 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHH-HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCcccccc-ccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence                       26789999998   55432    11111000000 000000 012478999999999888776 4 555


Q ss_pred             EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      ...+.  +++.+..+........         .......++++|||..|+....+|.
T Consensus       162 ~rV~p--dG~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~  207 (334)
T 2p9w_A          162 ARVSA--DGKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRA  207 (334)
T ss_dssp             EEECT--TSCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSS
T ss_pred             EEEeC--CCCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCe
Confidence            55554  3665544432221100         0111258999999988877655654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.14  E-value=0.18  Score=47.72  Aligned_cols=111  Identities=8%  Similarity=0.032  Sum_probs=69.9

Q ss_pred             ceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEe
Q 015290          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVD  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd  296 (409)
                      ....+++.+.+..|+.+  ..+.|.+.++. .. ...++      ....-.....++++|....++.+- +..+.|...+
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~-~~~~l------~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~  152 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQ-HRQVL------VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA  152 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-ST-TCEEE------ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecC-CC-cEEEE------EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence            35678888766666554  67889999987 32 22222      112234568999998651444443 2356777777


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      +......    .+...              -.....++++++++.|..+. . +.|...|+.
T Consensus       153 ~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          153 MDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             TTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            7654321    11111              24578899999888888775 3 899999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.16  Score=46.27  Aligned_cols=71  Identities=8%  Similarity=0.003  Sum_probs=44.4

Q ss_pred             eeEEEeCCCCCeEE-Ee-cCCeEEEEEccC------CCce-----------e-eeeecCCCcCcCccCceEEEEEeCCCC
Q 015290          221 INSISNNSDCETFV-SA-DDLRINLWNLEI------SDQC-----------F-NIVDMKPSNMDDLTEVITSAEFHPIYC  280 (409)
Q Consensus       221 v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~------~~~~-----------~-~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (409)
                      ...++++|++..|+ +- .++.|..+|+..      .+..           . ..+.     . +.....+.++|+|+| 
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-----~-~~~~~p~~ia~~p~G-  321 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-----I-ADPSWEFQIFIHPTG-  321 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-----C-SSSSCCEEEEECTTS-
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-----c-CCCCCceEEEEcCCC-
Confidence            35678999655555 55 788999999861      1221           1 1110     1 123456899999999 


Q ss_pred             CE-EEEEeCCCeEEEEeCC
Q 015290          281 NL-LAYSSSRGFVRLVDMR  298 (409)
Q Consensus       281 ~~-l~s~s~dg~i~iwd~~  298 (409)
                      ++ +++-+....|+.++..
T Consensus       322 ~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          322 KYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             SEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEecC
Confidence            74 5555567788886653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.06  E-value=0.21  Score=46.96  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=45.8

Q ss_pred             EEeCCCCCeEEEe-cC----------------CeEEEEEccCCCceeeeeecCCCc---CcCccCceEEEEEe-CCCC--
Q 015290          224 ISNNSDCETFVSA-DD----------------LRINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFH-PIYC--  280 (409)
Q Consensus       224 l~~~~~~~~l~~~-~d----------------~~i~lwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~-p~~~--  280 (409)
                      +++.++...++.+ .+                +.|.-+|.. +++.+-.+......   +.....++ -+... .+|.  
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~  323 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-TGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKAR  323 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-CCceeeEeecCCCccccccCCCccE-EEeccccCCcEE
Confidence            4556667777776 44                378889988 66665544322110   01111222 12222 4552  


Q ss_pred             CEEEEEeCCCeEEEEeCCCcccc
Q 015290          281 NLLAYSSSRGFVRLVDMRQSALC  303 (409)
Q Consensus       281 ~~l~s~s~dg~i~iwd~~~~~~~  303 (409)
                      ..++.++.+|.+.++|.+++++.
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEe
Confidence            35777889999999999998753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.06  E-value=0.11  Score=44.60  Aligned_cols=105  Identities=4%  Similarity=0.058  Sum_probs=61.1

Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE--eCCCCC-EEEEEeCCCeEEEEeCC---Ccccccccccccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMR---QSALCDHSARILR  311 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~  311 (409)
                      +++|.+|++......+..+......+..-...++.+++  +|.+.. +++....+|.+..|++.   .+....+.++.+.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            68999998741222343321000000011145667777  775423 67777888999999884   3322222234444


Q ss_pred             ccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      .              .+.+..+...+....|..+.+ ..|..++.+
T Consensus       178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            4              346788999998888888875 446666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.99  E-value=0.091  Score=46.32  Aligned_cols=164  Identities=12%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             EeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc
Q 015290          225 SNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (409)
Q Consensus       225 ~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  304 (409)
                      ....++..++.+.++.||.-++. .+..++.+..+..   ---..+..+..+|+| .+||..+. ..|.|-.+..+....
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~-~~~~Yk~L~~~~~---i~f~~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~  100 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVL-TDSLYHSLNFSRH---LVLDDTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNV  100 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETT-TCSSCEEEECTTT---CCCCTTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCC
T ss_pred             EEEcCCCEEEEEECCEEEEEECC-CCCcceEEecCcc---cccCceeEEEECCCC-CEEEEecC-CeEEEEEecCccccC
Confidence            34567888888878899988887 3444555432210   011246789999999 98888754 478998887432111


Q ss_pred             cc------c--ccccccccccCCcccccccccceeeeEeccCC---CEEEEe-ecCeEEEEEccCC-CcceEEEecccCc
Q 015290          305 HS------A--RILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR-DYMNLKLWDIRMD-STPVATFKIHEHL  371 (409)
Q Consensus       305 ~~------~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~sg-~~~~v~iwd~~~~-~~~~~~~~~~~~~  371 (409)
                      ..      +  +.+..   ++.    -.....+|.++.|+|-|   ..|++- +|+.||+||+... .++. .++.....
T Consensus       101 ~~~~~~~~~q~~ty~l---~~~----~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~  172 (452)
T 3pbp_A          101 EDVSIQDAFQIFHYSI---DEE----EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNS  172 (452)
T ss_dssp             CCHHHHHTTEEEEEEG---GGC----C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSE
T ss_pred             cccccccccceeEEEc---CCc----ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccc
Confidence            00      0  11111   000    01124689999999964   356665 5699999999852 2333 44421110


Q ss_pred             ccccccccCCCCccceeeEEEcCCCCeEEE--cccCCCC
Q 015290          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYRRDN  408 (409)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~s--~s~dg~i  408 (409)
                            +......-.|.+++|.++|-.|..  .+.+|.|
T Consensus       173 ------fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI  205 (452)
T 3pbp_A          173 ------FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI  205 (452)
T ss_dssp             ------EESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred             ------cCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence                  011122234579999998876665  4466654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.92  E-value=0.28  Score=46.10  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=23.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEM  155 (409)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  155 (409)
                      +..++.++.|+.|..+|..+++.......
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            44788888999999999999998876553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.88  E-value=0.19  Score=43.61  Aligned_cols=111  Identities=11%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             ceeEEEeCCCCCeEEEec----C------------CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEE
Q 015290          220 NINSISNNSDCETFVSAD----D------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~~----d------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  283 (409)
                      ..+.+.+.++|.++++..    |            ..=.+|.+. .+. ...       +...-...+.++|+||+ +.|
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d-~~~-~~~-------~~~~l~~pNGia~spDg-~~l  235 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PND-VRV-------VAEGFDFANGINISPDG-KYV  235 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC-TTC-CEE-------EEEEESSEEEEEECTTS-SEE
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE-CCe-EEE-------eecCCcccCcceECCCC-CEE
Confidence            467888888888776641    1            122344443 222 222       11122456899999999 655


Q ss_pred             EEE-eCCCeEEEEeCCC-ccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEee-c-CeEEEEEcc
Q 015290          284 AYS-SSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       284 ~s~-s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      +.+ +..+.|..|++.. +++..  .+.+..              ....-.+++.+ +|++.+++. + +.|..|+..
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~--~~~~~~--------------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTP--LRVLSF--------------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEE--EEEEEC--------------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             EEEeCCCCeEEEEEECCCCcEec--CEEEeC--------------CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            554 5678999999864 22211  122211              24567789999 598777653 4 555555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.87  E-value=0.06  Score=47.00  Aligned_cols=113  Identities=14%  Similarity=0.072  Sum_probs=61.2

Q ss_pred             ceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC---CCCEEEEEeCC-----Ce
Q 015290          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----GF  291 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~d-----g~  291 (409)
                      ....++|.|+|+++++-.++.|.+++ .  +.......++  ...........++++|+   +..++++-...     +.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~--g~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-E--GRLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-T--TEEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-C--CCccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            46789999999865555669999998 3  2222111111  11222356789999998   41444443332     56


Q ss_pred             EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |..|+...+... ....++..   -+..  .-..|  ....++|.|||.+.++-
T Consensus       107 v~r~~~~~~~~~-~~~~l~~~---~p~~--~~~~h--~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGV-LDRVVLDG---IPAR--PHGLH--SGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEECSSCEE-EEEEEEEE---ECCC--TTCCC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcC-ceEEEEEe---CCCC--CCCCc--CCceEEECCCCCEEEEE
Confidence            778887643210 00011111   0000  00112  24689999999766664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.80  E-value=0.36  Score=45.64  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=69.8

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iw  295 (409)
                      .....+++.+.+..|+.+  ..+.|.+.++.  +....++      ....-.....|+++|.+..++.+- +..+.|...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~~~l------~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~  155 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD--GSLRKVL------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA  155 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEE------ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECC--CCCEEEE------EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence            346789999866666655  78899999988  3333232      112234467899999752444443 224567666


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      ++.....     ..+-.            ..-.....+++++++..|..+. . +.|...|+.
T Consensus       156 ~~dG~~~-----~~l~~------------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          156 GMDGSSR-----FIIIN------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             ETTSCSC-----EEEEC------------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred             ECCCCce-----EEEEe------------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence            7654321     11111            0023568899999888777775 3 888888886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.75  E-value=0.39  Score=45.40  Aligned_cols=204  Identities=8%  Similarity=-0.009  Sum_probs=112.0

Q ss_pred             CCcEEEEEECCCCCEEEEEe-cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ......|+|++.+..|..+. ..+.|..++.++...                          ....+...-         
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--------------------------~~~v~~~~~---------   83 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------------------VQNVVVSGL---------   83 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC---------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--------------------------eEEEEeCCC---------
Confidence            45678999999666666554 457788888765421                          011122111         


Q ss_pred             eeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                         .....|++  ++.+..|+.+ ...+.|.+.++.+.....+.                                    
T Consensus        84 ---~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~------------------------------------  122 (619)
T 3s94_A           84 ---LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLF------------------------------------  122 (619)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEE------------------------------------
T ss_pred             ---CCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEE------------------------------------
Confidence               35778888  5655555544 56688888888754322221                                    


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c--CCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                                               ...-.....|++.|.+..|+.+ .  .+.|...++.  +.....+      ....
T Consensus       123 -------------------------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l------~~~~  169 (619)
T 3s94_A          123 -------------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFII------INSE  169 (619)
T ss_dssp             -------------------------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEE------ECSS
T ss_pred             -------------------------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC--CCceEEE------EeCC
Confidence                                     1112235678999875555554 2  4566666665  3333222      1222


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      -.....+++++++.+++.+-...+.|...|+......    .....             .......+++..+  .|....
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~----~~~~~-------------~~~~P~gi~~~~~--~ly~td  230 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ----AVVKG-------------SLPHPFALTLFED--ILYWTD  230 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------------------CCCEEESSS--EEEEEC
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE----EEEeC-------------CCCCceEEEEeCC--EEEEec
Confidence            3467899999976244445456678888888654321    11111             0112346777655  555543


Q ss_pred             -c-CeEEEEEccCCCcceEE
Q 015290          347 -Y-MNLKLWDIRMDSTPVAT  364 (409)
Q Consensus       347 -~-~~v~iwd~~~~~~~~~~  364 (409)
                       . +.|...|..+ ++....
T Consensus       231 ~~~~~V~~~d~~t-g~~~~~  249 (619)
T 3s94_A          231 WSTHSILACNKYT-GEGLRE  249 (619)
T ss_dssp             TTTCSEEEEESSS-CCCCEE
T ss_pred             CCCCEEEEEECCC-CcccEE
Confidence             3 8888888765 443333

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.73  E-value=0.07  Score=46.60  Aligned_cols=113  Identities=14%  Similarity=0.062  Sum_probs=60.9

Q ss_pred             cceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC---CCCEEEEEeC---C---
Q 015290          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R---  289 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~---d---  289 (409)
                      .....|+|.|+|+++++-.++.|.+++..  +. .....++  ...........|+++|+   +..++++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~--G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPS--GK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSS--CE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCC--Cc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            44678999999985555566999988743  43 2111111  01122345789999997   4144444332   3   


Q ss_pred             -CeEEEEeCCCccccccccc-cccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          290 -GFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       290 -g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                       +.|..|+...........+ ++..   -+.    -..|  ....++|.|||.+.++-
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~---~~~----~~~h--~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDG---IPG----AYIH--NGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEE---EEC----CSSC--CCCCEEECTTSCEEEEC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEc---CCC----CCCc--CCceEEECCCCcEEEEE
Confidence             5677777654310000001 1111   000    0112  34679999999877664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.63  E-value=0.3  Score=42.52  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=22.8

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEecc
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV   62 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~   62 (409)
                      .....|+|.|+|++|+++...|.|++++..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            346899999999834455678999998854

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.47  E-value=0.37  Score=41.65  Aligned_cols=116  Identities=10%  Similarity=0.001  Sum_probs=63.7

Q ss_pred             ccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC----CCCEEEEE--eCCC
Q 015290          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYS--SSRG  290 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~--s~dg  290 (409)
                      -.....|+|.|+|..+++- ..|.|++++.. .+.......+.. ...........|+++|+    + .+.++-  ..++
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~~~-v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~  107 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEVPG-VSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDN  107 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTT-CCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeecccCc-eeecCCCCceeeEeccccccCC-EEEEEEecCCCC
Confidence            3456899999999987777 59999999865 333222211111 12223456789999995    4 343332  2345


Q ss_pred             eEEEEeCCCccc----cccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          291 FVRLVDMRQSAL----CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       291 ~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      .|.-|....+..    ......++..   .+.    -..|  .-..++|.|||.+.++.
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~---~p~----~~~H--~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRG---IPK----GVIH--NGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEE---ECC----CSSC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEc---CCC----CCCc--cCccccCCCCCCEEEEE
Confidence            566666554211    0000111111   000    0122  35679999999877664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.46  E-value=0.37  Score=41.48  Aligned_cols=128  Identities=11%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             ceeEEEe--CCC-CC-eEEEe-cCCeEEEEEccC------CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC
Q 015290          220 NINSISN--NSD-CE-TFVSA-DDLRINLWNLEI------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  288 (409)
Q Consensus       220 ~v~~l~~--~~~-~~-~l~~~-~d~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~  288 (409)
                      .+..+++  +|. ++ +++.. .+|.+..|++..      ..+.++.+.        ..+.+..+..++.. ..|+.+-.
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--------lgsq~EgcvvDd~~-g~Lyv~eE  199 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--------MNSQTEGMAADDEY-GRLYIAEE  199 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--------CSSCEEEEEEETTT-TEEEEEET
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--------CCCCcceEEEcCCC-CeEEEecc
Confidence            3455666  664 44 45555 889999999842      123334332        12467889999887 78888888


Q ss_pred             CCeEEEEeCCCcccc-ccccccccccccccCCcccccccccceeeeEe--ccCCC-EEEEee--cCeEEEEEccCCCcce
Q 015290          289 RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQ-HLLSRD--YMNLKLWDIRMDSTPV  362 (409)
Q Consensus       289 dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~g~-~l~sg~--~~~v~iwd~~~~~~~~  362 (409)
                      +.-|..+|.+..... ...+..+..           ..-...+..|++  .++++ ||++.+  +++..+||.....+.+
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             cceEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence            876666665422100 000111111           001235777777  56666 677665  3899999996336777


Q ss_pred             EEEec
Q 015290          363 ATFKI  367 (409)
Q Consensus       363 ~~~~~  367 (409)
                      ..|.-
T Consensus       269 g~f~I  273 (355)
T 3amr_A          269 ADFRI  273 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.45  E-value=0.9  Score=46.37  Aligned_cols=113  Identities=9%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290          216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  295 (409)
                      ..++.+++++-- +| +|++|....|++|++. .++.+.. +     .... ..+..+.....+ ++++.|..-..+.++
T Consensus       883 ~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~-~~~~L~~-~-----~~~~-~~i~~~~l~~~~-~~I~vgD~~~Sv~~~  951 (1158)
T 3ei3_A          883 EVKGAVYSMVEF-NG-KLLASINSTVRLYEWT-TEKELRT-E-----CNHY-NNIMALYLKTKG-DFILVGDLMRSVLLL  951 (1158)
T ss_dssp             EESSCEEEEEEE-TT-EEEEEETTEEEEEEEC-TTSCEEE-E-----EEEC-CCSCEEEEEEET-TEEEEEESSBCEEEE
T ss_pred             EcCCcCEEEeee-CC-EEEEEcCCEEEEEECC-CCceEEE-E-----eecc-ccEEEEEEeccC-CEEEEEEhhheEEEE
Confidence            345678877643 24 7888877899999998 3333321 0     0111 112233333345 788888776666665


Q ss_pred             eCC--CccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          296 DMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       296 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      ..+  .+++     ..+..   +        .+..+++++.|-.++ .++.++. |.+.+....
T Consensus       952 ~y~~~~~~L-----~~~a~---D--------~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          952 AYKPMEGNF-----EEIAR---D--------FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EEETTTTEE-----EEEEE---C--------CSCBCEEEEEEEETT-EEEEEETTSEEEEEEEC
T ss_pred             EEEcCCCeE-----EEEEe---e--------cccccEEEEEEEccC-cEEEEcCCCcEEEEecC
Confidence            433  3221     22222   0        113478888887654 5556664 999998765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.45  E-value=0.15  Score=44.56  Aligned_cols=78  Identities=6%  Similarity=-0.037  Sum_probs=43.8

Q ss_pred             cceeEEEeCCCCC-eEEEecCCeEEEEEccCCCceeeee-ecCCCcCcCccCceEEEEEeCC---CCCEEEEEeC-----
Q 015290          219 FNINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIV-DMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS-----  288 (409)
Q Consensus       219 ~~v~~l~~~~~~~-~l~~~~d~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~-----  288 (409)
                      .....|+|.|+|+ ++++-..|.|++++..  +.....+ .++ ............++++|+   +..+.++-+.     
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            3467899999998 5554477999998854  3221111 111 001122345789999995   3144444332     


Q ss_pred             --CCeEEEEeCCC
Q 015290          289 --RGFVRLVDMRQ  299 (409)
Q Consensus       289 --dg~i~iwd~~~  299 (409)
                        ...|..|++..
T Consensus        95 ~~~~~v~r~~~~~  107 (353)
T 2g8s_A           95 KAGTAVGYGRLSD  107 (353)
T ss_dssp             CEEEEEEEEEECT
T ss_pred             CceeEEEEEEECC
Confidence              23566666643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.40  E-value=0.19  Score=51.44  Aligned_cols=153  Identities=7%  Similarity=0.118  Sum_probs=82.9

Q ss_pred             cceeEEEecCCcccceeeeeecccc----ccceeEEEeCCCCCeEEE-e-------cCCeEEEEEccCCCceeeeeecCC
Q 015290          193 NMATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKP  260 (409)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~-~-------~d~~i~lwd~~~~~~~~~~~~~~~  260 (409)
                      +..|.-|+++.  ...+.+.| ..|    ...|..-..+++.++++. |       -.|.+.+|..+ . ...+.     
T Consensus       124 ~~aVyHW~~~~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r-~~sQ~-----  193 (1630)
T 1xi4_A          124 DNAVYHWSMEG--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-R-KVSQP-----  193 (1630)
T ss_pred             CCeEEEeccCC--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-c-ccchh-----
Confidence            44577777754  22444433 333    355666777888888873 3       24778899887 2 22222     


Q ss_pred             CcCcCccCceEEEEEe--CCCCCEEEEEeC---CCeEEEEeCCCccccccccccccccccccCCccc-cc--ccccceee
Q 015290          261 SNMDDLTEVITSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF-FT--EIIASISD  332 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~--p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~i~~  332 (409)
                        +.||.+....+...  +....+|+.+..   .+.++|-++.......   ..+..     ..... |.  .-..-..+
T Consensus       194 --iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~k-----k~~~~~~~~~~~~Dfpv~  263 (1630)
T 1xi4_A          194 --IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPK-----KAVDVFFPPEAQNDFPVA  263 (1630)
T ss_pred             --hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC---CCCcc-----ccccccCCcccccCcceE
Confidence              57776655544443  222134444332   3689998885430000   11110     00000 00  01223446


Q ss_pred             eEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       333 ~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~  366 (409)
                      +..|+.-..+..-+. |.|.+||+.+ +.++..-+
T Consensus       264 ~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~r  297 (1630)
T 1xi4_A          264 MQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNR  297 (1630)
T ss_pred             EEeccccCEEEEEecCceEEEEeccc-chhhhhcc
Confidence            777877667776666 9999999987 66554433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.34  E-value=0.4  Score=43.36  Aligned_cols=118  Identities=11%  Similarity=0.074  Sum_probs=61.4

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC-cCccCceEEEEEeCC---CCCEEEEEeC-----
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPI---YCNLLAYSSS-----  288 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~---~~~~l~s~s~-----  288 (409)
                      .....|+|.|+|+++++- ..+.|++++.. .+.......+..... .........|+|+|+   +..+.++-+.     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            356799999999977777 44578888764 333322222221100 112456789999995   4144444332     


Q ss_pred             -------CCeEEEEeCCCcccc-ccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          289 -------RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       289 -------dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                             ...|.-|+...+... .....++..   .+.    -..  .....++|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~---~p~----~~~--H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG---LPS----SKD--HQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEE---ECC----CSS--CCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEc---CCC----CCC--CCCCeEeECCCCeEEEEEC
Confidence                   234555554332100 000111211   000    011  2468899999998766643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.15  E-value=0.93  Score=42.92  Aligned_cols=116  Identities=4%  Similarity=-0.066  Sum_probs=67.7

Q ss_pred             ceeEEEeCCCCCeEEEe-c--CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          220 NINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ....|+++|....|+.+ .  .+.|...++.  +.....+      .. .-.....+++++++.+++.+-...+.|..+|
T Consensus       124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l------~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTL------VP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEE------EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEE------EC-CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            45789999865555554 2  5677777776  3333332      11 2346789999998724444445678899999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~  365 (409)
                      +.....     +.+..             .......+++..  ..|...+ . +.|...|..+ ++....+
T Consensus       195 ~dG~~~-----~v~~~-------------~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~t-g~~~~~l  244 (628)
T 4a0p_A          195 MLGLNR-----EVIAD-------------DLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTS-GQNRTII  244 (628)
T ss_dssp             TTSCSC-----EEEEE-------------CCSCEEEEEEET--TEEEEEETTTTEEEEEETTT-CCSCEEE
T ss_pred             CCCCce-----EEeec-------------cCCCceEEEEEC--CEEEEecCCCCEEEEEECCC-CCceEEE
Confidence            876432     12211             012345677764  3444443 3 8888888654 4444444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.10  E-value=0.2  Score=39.91  Aligned_cols=114  Identities=11%  Similarity=-0.030  Sum_probs=62.1

Q ss_pred             ceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcC--cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .+..++|+|+|.+.++ .+|.+.-.+.. +.....-+.. ...+  .+-.. ..++.|.|+| .+.++  .||.|.-++.
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~-t~~~~~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPP-THDNDNWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCC-CSTTCCHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCC-CCCccccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence            5679999999986666 77765554443 2111000000 0000  01111 4789999999 66665  5698887775


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEE
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  351 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~  351 (409)
                      .+.. .    ..+-. . ..   .+-..--..+..+.|.|+|.+-+.. ++.++
T Consensus       115 P~~~-~----~~Wl~-~-a~---~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A          115 PQSD-T----DNWIA-R-AT---EVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             CCST-T----CCHHH-H-SE---EEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             CcCC-C----Cceec-c-cc---EeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence            4322 1    11111 0 00   0000001357899999999988888 77654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.76  E-value=0.16  Score=40.47  Aligned_cols=63  Identities=8%  Similarity=-0.049  Sum_probs=35.3

Q ss_pred             cceeEEEeCCCCCeEEEecCCeEEEEEccCCCc-----eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  291 (409)
                      ..+..|.+.|+|.+.+.. |+.++-+.......     ....+      ....-...+.+.|.|++ .+.+..  ++.
T Consensus       135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~------g~~g~~~yr~l~f~~~G-~l~~v~--~g~  202 (236)
T 1tl2_A          135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKI------GQGGWDTFKFLFFSSVG-TLFGVQ--GGK  202 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEE------ESSSGGGEEEEEECTTS-CEEEEE--TTE
T ss_pred             CceEEEEECCCceEEEEe-CCcEEecCCCCCCCccccccccee------ccCCcceEEEEEECCCC-cEEEEe--CCe
Confidence            456899999999888877 77754322221110     00110      11222344567799988 666554  663

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.65  E-value=0.86  Score=38.58  Aligned_cols=106  Identities=8%  Similarity=-0.001  Sum_probs=55.2

Q ss_pred             EeCCCCCeEEEec---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCc
Q 015290          225 SNNSDCETFVSAD---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS  300 (409)
Q Consensus       225 ~~~~~~~~l~~~~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~  300 (409)
                      .|++++++|+-..   ++.-.||.+...+.....+       ..+..    ..++|++ +.|+-.+. ...|.+.++..+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l-------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI-------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEE-------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEE-------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence            5667888877552   4444555544334333332       22211    3467778 66665554 567888887665


Q ss_pred             cccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--c-CeEEEEEccCCCcceEEE
Q 015290          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATF  365 (409)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--~-~~v~iwd~~~~~~~~~~~  365 (409)
                      ...    .++..                ... ..++|++.+|+-..  + ..|..-++.  +.....+
T Consensus       178 ~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~L  222 (302)
T 3s25_A          178 SEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVL  222 (302)
T ss_dssp             EEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEEC
T ss_pred             CEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEE
Confidence            421    11211                111 23568888888654  2 345555554  4444443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.08  E-value=1.9  Score=39.00  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~   64 (409)
                      ...+.|+|.|+|+++++-...+.|.+++..++
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            45679999999997776544457888875544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.36  E-value=2  Score=36.06  Aligned_cols=23  Identities=9%  Similarity=-0.076  Sum_probs=16.2

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSR-----GFVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~d-----g~i~iwd~~~~~  301 (409)
                      ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          159 SG-VIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CC-EEEEECCCCCCcccceEEEEeCCCCc
Confidence            55 777777754     458889987754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.20  E-value=3.1  Score=37.61  Aligned_cols=60  Identities=12%  Similarity=-0.009  Sum_probs=35.0

Q ss_pred             cceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc----CccCceEEEEEeCC
Q 015290          219 FNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI  278 (409)
Q Consensus       219 ~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~  278 (409)
                      .....|+|.|++. .|+++ ..|.|++++.........+.+++.....    ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3457899999985 45555 8899999975411111111222211111    12456789999996

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.03  E-value=4.8  Score=33.75  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=15.9

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSR-----GFVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~d-----g~i~iwd~~~~~  301 (409)
                      ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       200 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          200 KD-KIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            45 777777653     358889988754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.32  E-value=6.6  Score=33.86  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=26.0

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~   65 (409)
                      -..-+.|+|.|||+++++-...|.|++++..++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            3567899999999977766558999998765443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.82  E-value=0.84  Score=41.82  Aligned_cols=80  Identities=15%  Similarity=0.070  Sum_probs=52.5

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceee--eeecCC--CcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i  292 (409)
                      .....+.++|||++++.+  .+.++.++|++.-...+.  .++.+.  ..-..-.-.....+|+++| +...+.--|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence            345678899999999875  799999999983111000  000000  0001123456789999999 777777789999


Q ss_pred             EEEeCCC
Q 015290          293 RLVDMRQ  299 (409)
Q Consensus       293 ~iwd~~~  299 (409)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999865

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.46  E-value=7  Score=32.67  Aligned_cols=23  Identities=13%  Similarity=-0.084  Sum_probs=15.3

Q ss_pred             CCCCEEEEEeCC-------CeEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSR-------GFVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~d-------g~i~iwd~~~~~  301 (409)
                      ++ ++++.|+.+       ..+.+||+.+++
T Consensus       155 ~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          155 GG-LLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TT-EEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CC-EEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            45 677777642       358889987754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.20  E-value=7.5  Score=32.64  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=33.9

Q ss_pred             CCCeEEEe-cC-----CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----CeEEEEeC
Q 015290          229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  297 (409)
Q Consensus       229 ~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----g~i~iwd~  297 (409)
                      +++.++.| .+     ..+.+||+. ...-...-.     +.........+.+  ++ ++++.|+.+     ..+.+||+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~-----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPE-RNEWRMITA-----MNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT-TTEEEECCC-----CSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCC-CCeEeeCCC-----CCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence            45555655 33     457888887 333222211     1111122222333  45 777887764     46889998


Q ss_pred             CCcc
Q 015290          298 RQSA  301 (409)
Q Consensus       298 ~~~~  301 (409)
                      .+.+
T Consensus       239 ~~~~  242 (308)
T 1zgk_A          239 ETET  242 (308)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.12  E-value=7.7  Score=32.68  Aligned_cols=105  Identities=11%  Similarity=0.059  Sum_probs=56.0

Q ss_pred             EeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC--CeEEEEeCCCc
Q 015290          225 SNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFVRLVDMRQS  300 (409)
Q Consensus       225 ~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--g~i~iwd~~~~  300 (409)
                      +++++++.|+-.  ....|..-++. .+. .+.+      +.   +.. ...+.|++ .+|+-...+  ..|..-++...
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~-~~~l------~~---~~~-~~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTA-SQS-EALF------YD---CNC-YKPVVLDD-TNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETT-TTE-EEEE------EC---SCE-EEEEEEET-TEEEEEEGGGTTEEEEECSSSC
T ss_pred             EeeEECCEEEEEeCCCceEEEEECC-CCC-EEEE------eC---CCc-cceeeecC-CEEEEEEcCCCcEEEEEECCCC
Confidence            456777777755  35677777766 333 2222      11   112 23456888 666655433  35555566554


Q ss_pred             cccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec---CeEEEEEccCCCcceEEEe
Q 015290          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFK  366 (409)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~---~~v~iwd~~~~~~~~~~~~  366 (409)
                      ..     ..+..               ..+  ..|+|++++|.-+++   +.|..-++.  |...+.+.
T Consensus       218 ~~-----~~Lt~---------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l~  262 (302)
T 3s25_A          218 NP-----VVLTE---------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKELA  262 (302)
T ss_dssp             CC-----EECSC---------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEEE
T ss_pred             Ce-----EEEeC---------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEee
Confidence            32     22222               122  347888988876533   556666654  55444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=89.54  E-value=8.3  Score=32.16  Aligned_cols=64  Identities=9%  Similarity=0.069  Sum_probs=34.0

Q ss_pred             CCCeEEEe-cC-----CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----CeEEEEeC
Q 015290          229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  297 (409)
Q Consensus       229 ~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----g~i~iwd~  297 (409)
                      +++.++.| .+     ..+..||+. ...-...-.     +.........+.+  ++ ++++.|+.+     ..+.+||+
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~-~~~W~~~~~-----~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPH-TGHWTNVTP-----MATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT-TTEEEEECC-----CSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCCCCCcccceEEEEeCC-CCcEEeCCC-----CCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeC
Confidence            45566665 33     457888887 333322211     1111111122222  45 777877764     46889998


Q ss_pred             CCcc
Q 015290          298 RQSA  301 (409)
Q Consensus       298 ~~~~  301 (409)
                      .+.+
T Consensus       230 ~~~~  233 (301)
T 2vpj_A          230 RTDS  233 (301)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.54  E-value=8.4  Score=32.24  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=16.8

Q ss_pred             CCCEEEEEeCC----CeEEEEEcCCceeeee
Q 015290          126 NGSMFILSTND----KTIKLWKVRDQKVKKI  152 (409)
Q Consensus       126 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~  152 (409)
                      ++..++.|+.+    ..+.+||+.+++....
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~   85 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK   85 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence            55566666644    4577777777665443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.52  E-value=9.4  Score=32.80  Aligned_cols=21  Identities=5%  Similarity=-0.148  Sum_probs=14.0

Q ss_pred             CCCEEEEEecC-CeEEEEeccC
Q 015290           43 TGDYLAVGDRG-GRVILFETVG   63 (409)
Q Consensus        43 ~~~~la~~~~d-g~i~iw~~~~   63 (409)
                      ++++++.|+.+ ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~   40 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQA   40 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTS
T ss_pred             CCEEEEEeCcCCCeEEEEcccc
Confidence            56777777643 4677788764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.51  E-value=8.3  Score=32.17  Aligned_cols=23  Identities=22%  Similarity=0.066  Sum_probs=16.5

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSR-----GFVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~d-----g~i~iwd~~~~~  301 (409)
                      ++ ++++.|+.+     ..+.+||+.+++
T Consensus       204 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          204 NN-LLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence            45 778887764     368899988754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.01  E-value=7.1  Score=33.52  Aligned_cols=26  Identities=8%  Similarity=-0.009  Sum_probs=19.5

Q ss_pred             CCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290          230 CETFVSA-DDLRINLWNLEISDQCFNIV  256 (409)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (409)
                      +..+++| .++++...|++ +++.+..+
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~-tG~~~W~~  137 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINML-NGEIISAF  137 (339)
T ss_dssp             CEEEEECEEEEEEEEEETT-TCCEEEEE
T ss_pred             CCEEEEEecCCEEEEEECC-CCcEEEEE
Confidence            4467777 88899888888 67776664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.39  E-value=12  Score=31.38  Aligned_cols=23  Identities=9%  Similarity=-0.164  Sum_probs=16.1

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCcc
Q 015290          278 IYCNLLAYSSSR-----GFVRLVDMRQSA  301 (409)
Q Consensus       278 ~~~~~l~s~s~d-----g~i~iwd~~~~~  301 (409)
                      ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          168 NR-LLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CC-EEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            45 777777754     458889987754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.08  E-value=25  Score=33.72  Aligned_cols=28  Identities=25%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             CCCCEEEEEeCCC--eEEEEEcCCceeeee
Q 015290          125 PNGSMFILSTNDK--TIKLWKVRDQKVKKI  152 (409)
Q Consensus       125 ~~~~~l~s~~~d~--~i~iwd~~~~~~~~~  152 (409)
                      .+++.++.|+.++  .+.+||+.++.....
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDV  528 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence            4777778876554  688888887766543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.90  E-value=16  Score=32.88  Aligned_cols=29  Identities=14%  Similarity=0.059  Sum_probs=22.0

Q ss_pred             ceEEEEEeCCCCC-EEEEEeCCCeEEEEeCC
Q 015290          269 VITSAEFHPIYCN-LLAYSSSRGFVRLVDMR  298 (409)
Q Consensus       269 ~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~  298 (409)
                      ..+.|+|.|+| . .|+.+...|.|++++..
T Consensus        15 ~P~~~a~~pdG-~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDG-SQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSS-SCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCC-CeEEEEEeCCceEEEEeCC
Confidence            45799999998 5 34445678999999754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.21  E-value=8.8  Score=35.36  Aligned_cols=77  Identities=5%  Similarity=0.009  Sum_probs=45.8

Q ss_pred             ceEEEEEeCCCCCEEEE-EeCCCeEEEEeCCCccccc-----cccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          269 VITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCD-----HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s-~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      ....+.++||| ++++. |-.+.++.++|++.-....     ........  +.+        -.-.....+|.++| ..
T Consensus       324 sPHGv~vsPDG-kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a--e~e--------~GlGPlHt~Fd~~G-~a  391 (638)
T 3sbq_A          324 NPHGCNTSSDG-KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG--EPE--------LGLGPLHTTFDGRG-NA  391 (638)
T ss_dssp             SCCCEEECTTS-CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE--CCB--------CCSCEEEEEECSSS-EE
T ss_pred             CCcceeeCCCC-CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe--ecc--------CCCcccEEEECCCC-ce
Confidence            34678899999 65555 4568899999987521100     00000000  000        01245678999999 44


Q ss_pred             EEe-e-cCeEEEEEccC
Q 015290          343 LSR-D-YMNLKLWDIRM  357 (409)
Q Consensus       343 ~sg-~-~~~v~iwd~~~  357 (409)
                      .+. - |.+|.-|++..
T Consensus       392 YTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEETTTTEEEEEEHHH
T ss_pred             EeeeeecceEEEEeccH
Confidence            444 2 68999999974

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.11  E-value=16  Score=30.67  Aligned_cols=26  Identities=4%  Similarity=0.230  Sum_probs=15.2

Q ss_pred             CCCEEEEEeC-C-----CeEEEEEcCCceeee
Q 015290          126 NGSMFILSTN-D-----KTIKLWKVRDQKVKK  151 (409)
Q Consensus       126 ~~~~l~s~~~-d-----~~i~iwd~~~~~~~~  151 (409)
                      +++.++.|+. +     ..+.+||+.+.+...
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~  179 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE  179 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE
Confidence            4556666654 1     356777777665543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.84  E-value=7.3  Score=37.08  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc--cccCceeccCCCCCceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL--AEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      ..|.++.+    +..++++-+.|+++|+|++.++++.........+....-...+  ..+..+....    .++..-...
T Consensus       222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~----~~lv~y~P~  293 (729)
T 3f7f_A          222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYN----NTLVTLLPL  293 (729)
T ss_dssp             CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESS----SEEEEEETT
T ss_pred             ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhee----eEEEEEecC
Confidence            35666665    3669999999999999999999988776653221100001111  3344444332    333322224


Q ss_pred             ccceeEEEecCCc
Q 015290          192 ENMATKIANVGNS  204 (409)
Q Consensus       192 ~~~~i~~~~~~~~  204 (409)
                      .+|..++|.+...
T Consensus       294 ~~G~Fk~~~l~~~  306 (729)
T 3f7f_A          294 ENGLFQMGTLLVD  306 (729)
T ss_dssp             TTCEEEEEEEEC-
T ss_pred             CCCeEEEEEEEEc
Confidence            4678899988543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.90  E-value=40  Score=32.25  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=37.8

Q ss_pred             CCCeEEEe-cCC--eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC-CCCEEEEEeC--C-----CeEEEEeC
Q 015290          229 DCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI-YCNLLAYSSS--R-----GFVRLVDM  297 (409)
Q Consensus       229 ~~~~l~~~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~s~--d-----g~i~iwd~  297 (409)
                      +++.++.| .++  .+.+||.. ...- ..+... ..++.......++.+..+ + ++++.|+.  +     +.+.+||+
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~-t~~W-~~~~~~-g~~p~~r~~~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~  575 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVT-EEIF-KDVTPK-DEFFQNSLVSAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFKY  575 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETT-TTEE-EECCCS-SGGGGSCCBSCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEEE
T ss_pred             CCEEEEECCCCCCCCEEEEECC-CCce-EEccCC-CCCCCcccceeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEEc
Confidence            67777776 433  68889987 3332 221110 001111222234555655 5 77888775  2     45888998


Q ss_pred             CCcc
Q 015290          298 RQSA  301 (409)
Q Consensus       298 ~~~~  301 (409)
                      .+..
T Consensus       576 ~~~~  579 (695)
T 2zwa_A          576 DAEN  579 (695)
T ss_dssp             CTTC
T ss_pred             cCCc
Confidence            8765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.69  E-value=38  Score=33.83  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  302 (409)
                      .+.+++..++. .++++-+.|+++|+|++.+++.
T Consensus       237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCe
Confidence            46777788877 8999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 37/302 (12%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162
           + +  KSL+    +  V++  + +G  ++ +  +KT ++++V D  +      D      
Sbjct: 52  DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN 222
            EN   +        +P S  +   + ++ +   K    G            +     I 
Sbjct: 109 PENLNTS-------SSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282
                            ++   + + + + +++   + S    + + +T+    P     
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342
           +A  S    VR+ D     L +                   T    S+  + F  DGQ +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402
           +S             ++   +  K       ++  + + D +      + + +  +  +G
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS---VATTQNDEYILSG 326

Query: 403 SY 404
           S 
Sbjct: 327 SK 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 38/317 (11%), Positives = 85/317 (26%), Gaps = 49/317 (15%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------KEMD 156
              + RV +   P  S+ + ++ D TIK+W       ++                  ++ 
Sbjct: 17  RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH- 215
                     L   + F          H             I +       +  +V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 216 ------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268
                  H   +  +  N D     S  +D  + +W +   +    + + +         
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---- 190

Query: 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328
           +  + E      +    S ++   +      S   D + ++      +            
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDN 248

Query: 329 SISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387
            +  + F + G+ +LS  D   L++WD + +   + T   HE              +   
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHE------------HFVTS- 294

Query: 388 FECSVSGDGLHFATGSY 404
                     +  TGS 
Sbjct: 295 --LDFHKTAPYVVTGSV 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 33/302 (10%), Positives = 78/302 (25%), Gaps = 34/302 (11%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172
             KI  + W    +  + + ++ D  + +W            +     ++          
Sbjct: 55  LAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 232
                +     +           ++         + C+ +  +    +    +       
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 233 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT---------EVITSAEFHPIYCNLL 283
                          +S        +  S   D +             +   H    N +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343
            +  +           +   D + R+    A+          II  I+ + F+  G+ LL
Sbjct: 233 CFFPNGNAF------ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 344 S-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402
           +  D  N  +WD    +        H+            + +       V+ DG+  ATG
Sbjct: 287 AGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC---LGVTDDGMAVATG 330

Query: 403 SY 404
           S+
Sbjct: 331 SW 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 42/357 (11%), Positives = 94/357 (26%), Gaps = 49/357 (13%)

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
            +G K   + H++     + + F     P+         H      + +L   E +  V 
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFP----PDALIGPGIPRH---ARQINTLNHGEVVCAVT 58

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDHFPFVSS-----ENTLLA-- 169
                     + +     +K+W +        V ++  ++   ++ S     +   L   
Sbjct: 59  IS--NPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

Query: 170 -EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS 228
            E + ++  +  +       E T +     A   +     C       +    +  +   
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175

Query: 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288
             +     D       + + +      +D    + D                  L Y  +
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235

Query: 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347
             ++ +     +    H  +  +     H S             +KFA  G+  +S    
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL---------SLKFAYCGKWFVSTGKD 286

Query: 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
             L  W        +   K                S+     C +S D  +  TGS 
Sbjct: 287 NLLNAWRTP-YGASIFQSKES-------------SSVLS---CDISVDDKYIVTGSG 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 36/319 (11%), Positives = 69/319 (21%), Gaps = 43/319 (13%)

Query: 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176
           + V  C    G+  +  ++D T+K+W     K  +          SS+       +   +
Sbjct: 17  DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF--- 233
                +                      +H +            +  I            
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 234 ---VSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSR 289
              V               D    + D +  + +  L                +   S  
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196

Query: 290 GFVRLVDMRQ-------------------------SALCDHSARILRDAAESHGSKSFFT 324
             +R+ D+                           S   D + +I               
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
               S       N    + S D   +KLWD++     +      E          +   +
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLE-------SGGSGGVV 308

Query: 385 FDKFECSVSGDGLHFATGS 403
           +       S   L  A GS
Sbjct: 309 WR---IRASNTKLVCAVGS 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 33/345 (9%), Positives = 81/345 (23%), Gaps = 29/345 (8%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
           D +S I+   +   L +    G + +++           + +S   K             
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTD 69

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
            +    + + E   +  +            A           +DK I        +V   
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 153 KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV 212
           +                 K         + +    +    +                 + 
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 213 YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---- 268
               +     ++          S+ D R+ +   +     +N           L      
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249

Query: 269 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325
               + S EF P     L  + S G +   +++       + + +++ A+ +        
Sbjct: 250 LAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQ-------TRKKIKNFAKFN-------- 293

Query: 326 IIASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE 369
                S +K A     L         K       +  +    I+ 
Sbjct: 294 ---EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYI 335

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.27
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.24
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.96
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.91
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.61
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.51
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.49
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.38
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.03
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.88
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.39
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.3
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.13
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.63
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.4
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.66
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.7
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.09
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.66
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.56
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.54
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.84
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	83.24
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	80.38

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-39  Score=284.93  Aligned_cols=283  Identities=16%  Similarity=0.232  Sum_probs=220.4

Q ss_pred             ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      ..++|.+.|++++|+|+|++||+|+ ||.|+|||+.+....                      .........+|.     
T Consensus        46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~----------------------~~~~~~~~~~h~-----   97 (337)
T d1gxra_          46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD-----   97 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT-----
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc----------------------ceeEEeeecCCC-----
Confidence            3456999999999999999999998 799999999876531                      001223345677     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                             +.|.+++|  +|++++|++++.|++|++||+.............           ....+....++++..+++
T Consensus        98 -------~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~  157 (337)
T d1gxra_          98 -------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-----------SAPACYALAISPDSKVCF  157 (337)
T ss_dssp             -------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-----------SSSCEEEEEECTTSSEEE
T ss_pred             -------CcEEEEEE--cCCCCEEEEeeccccccccccccccccccccccc-----------cccccccccccccccccc
Confidence                   89999999  7999999999999999999987654332222111           112233334455666666


Q ss_pred             cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      .+..  ++.+++|++.+   .++.... .+|...|.+++|++++..++++ .|+.+++||++ .++.+..        ..
T Consensus       158 s~~~--d~~i~~~~~~~---~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~-~~~~~~~--------~~  222 (337)
T d1gxra_         158 SCCS--DGNIAVWDLHN---QTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQ--------HD  222 (337)
T ss_dssp             EEET--TSCEEEEETTT---TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE--------EE
T ss_pred             cccc--ccccccccccc---ccccccc-cccccccccccccccccccccccccccccccccc-cceeecc--------cc
Confidence            5554  88999999976   3444544 7889999999999999999999 99999999998 6666554        34


Q ss_pred             ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      |...|.+++|+|++ ++|++++.|+.+++||++.++.     ...             ..|...|++++|+|+|++|++|
T Consensus       223 ~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-----~~~-------------~~~~~~i~~v~~s~~g~~l~s~  283 (337)
T d1gxra_         223 FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQL-------------HLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEE-------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccceEEEEEcccc-cccceecccccccccccccccc-----ccc-------------cccccccceEEECCCCCEEEEE
Confidence            67889999999999 9999999999999999988653     111             2346789999999999999999


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      +. +.|++||+.+ ++.+..+. |...+               ++++|+||+++|++|+.||+|
T Consensus       284 s~Dg~i~iwd~~~-~~~~~~~~-~~~~v---------------~~~~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         284 GKDNLLNAWRTPY-GASIFQSK-ESSSV---------------LSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             ETTSEEEEEETTT-CCEEEEEE-CSSCE---------------EEEEECTTSCEEEEEETTSCE
T ss_pred             eCCCeEEEEECCC-CCEEEEcc-CCCCE---------------EEEEEeCCCCEEEEEeCCCeE
Confidence            74 9999999986 77776665 44443               699999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-38  Score=286.03  Aligned_cols=320  Identities=16%  Similarity=0.219  Sum_probs=214.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ++|.+.|+||+|+|||++||+|+ |+.|+|||+.+++..       ..+..+....  ..+.........+|.       
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~-------  121 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-------ARLSDDSAAN--KDPENLNTSSSPSSD-------  121 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-------EEECC-------------------CCC-------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE-------eeeccccccc--ccccccccccccCCC-------
Confidence            46999999999999999999997 889999999877631       1111000000  000000111122333       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|++++|  +|++++|++|+.|+.|++||...++.......+.             ..+......+....+..+
T Consensus       122 -----~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~  181 (388)
T d1erja_         122 -----LYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE-------------QDIYSLDYFPSGDKLVSG  181 (388)
T ss_dssp             -----CBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSEEEEE
T ss_pred             -----CCEEEEEE--CCCCCcceeccccccccccccccccccccccccc-------------cccccccccccccccccc
Confidence                 78999999  7999999999999999999999887765543221             122333334444455544


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.+++||....   ...... ..+...+....+.+++++|++| .|+.|++||.+ .+.....+........+|.
T Consensus       182 ~~--~~~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~h~  254 (388)
T d1erja_         182 SG--DRTVRIWDLRTG---QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHK  254 (388)
T ss_dssp             ET--TSEEEEEETTTT---EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCS
T ss_pred             cc--ceeeeeeecccc---cccccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecc-cCccceeeccccccccCCC
Confidence            43  889999999763   333322 3344444444445578999999 99999999998 6666665544444567889


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|++++|+|++ ++|++++.||.|++||++++....    .... ............|...|.+++|+|+|++|++|+.
T Consensus       255 ~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         255 DSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             CCEEEEEECCCC-CEEEEEECCCcEEEEeccCCcccc----cccc-ccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence            999999999999 999999999999999998765321    1111 0111112234467789999999999999999975


Q ss_pred             -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       |.|++||+++ ++++..+++|...+..+.         ....++|+||+.+||||+.||+|
T Consensus       329 dg~i~vwd~~~-~~~~~~l~~H~~~V~~~~---------~~~~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         329 DRGVLFWDKKS-GNPLLMLQGHRNSVISVA---------VANGSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             TSEEEEEETTT-CCEEEEEECCSSCEEEEE---------ECSSCTTCTTCEEEEEEETTSEE
T ss_pred             CCEEEEEECCC-CcEEEEEeCCCCCEEEEE---------EecCcccCCCCCEEEEEeCCCEE
Confidence             9999999986 899999999998762110         00123467899999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-38  Score=272.16  Aligned_cols=288  Identities=10%  Similarity=0.106  Sum_probs=224.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .+.+.+..++++|+|+.||.++ ++.|.+|++++...                           ...+.+|.        
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~---------------------------~~~~~~H~--------   58 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------------TEIYTEHS--------   58 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------------CEEECCCS--------
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce---------------------------eEEEcCCC--------
Confidence            3556777899999999999885 66899999987663                           45678998        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          +.|++++|  +|+|++|++|+.||+|++||+.++.......+.           ...+.+..+.+++++.+++.++
T Consensus        59 ----~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          59 ----HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-----------VFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-----------CSSSCEEEEEECTTSCEEEEEE
T ss_pred             ----CCEEEEEE--eCCCCeEeccccCceEeeeeeeccccccccccc-----------cccCcccccccccccccccccc
Confidence                89999999  799999999999999999999887543322111           1123344555667777777776


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ...+..+++|+.++.   +....+ .+|...|++++|+|++++ +++| .|+.|++||++ ..+....       +..|.
T Consensus       122 ~~~~~~~~v~~~~~~---~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~-------~~~~~  189 (311)
T d1nr0a1         122 EGRERFGHVFLFDTG---TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FGEHT  189 (311)
T ss_dssp             CCSSCSEEEEETTTC---CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------ECCCS
T ss_pred             ccccccccccccccc---cccccc-cccccccccccccccceeeeccccccccccccccc-ccccccc-------ccccc
Confidence            655678999999863   344444 789999999999999886 6778 99999999999 6666655       57889


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-  346 (409)
                      ..|+++.|+|++ ++|++++.|+.|++||.+++...    ..+..      ......+|...|.+++|+|++++|++|+ 
T Consensus       190 ~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         190 KFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccCccc-ccccccccccccccccccccccc----ccccc------cccccccccccccccccCCCCCEEEEEeC
Confidence            999999999999 99999999999999999886531    22222      1122456788999999999999999997 


Q ss_pred             cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |+.|+|||+++ ++++..+..+.....              ..+.+.+++.+|++++.||.|
T Consensus       259 Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         259 DKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFI  305 (311)
T ss_dssp             TSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCE
T ss_pred             CCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEE
Confidence            59999999986 888998887765321              134455566689999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-37  Score=273.77  Aligned_cols=282  Identities=17%  Similarity=0.258  Sum_probs=214.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++|+|+|++++||+|+.||+|+|||+.+++                           .+..+.+|.        
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~---------------------------~~~~~~~~~--------   97 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---------------------------KVHAIPLRS--------   97 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---------------------------EEEEEECSC--------
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---------------------------eEEEEeccc--------
Confidence            499999999999999999999999999999998776                           467788898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++|  +|++.++++++.|+.+++|+...............          ................+... 
T Consensus        98 ----~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-  160 (340)
T d1tbga_          98 ----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELA----------GHTGYLSCCRFLDDNQIVTS-  160 (340)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC----------CCSSCEEEEEEEETTEEEEE-
T ss_pred             ----ccEEeeEe--eccceeeeeecccceeecccccccccccccceecc----------cccccccccccccccccccc-
Confidence                89999999  79999999999999999999875532211110000          00000000000000111111 


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                       ..+.....+......   ..... ..+...+....+.+.+.++++| .|+.|++||++ .+..+..       +.+|..
T Consensus       161 -~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-~~~~~~~-------~~~h~~  227 (340)
T d1tbga_         161 -SGDTTCALWDIETGQ---QTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------FTGHES  227 (340)
T ss_dssp             -ETTTEEEEEETTTTE---EEEEE-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEE-------ECCCSS
T ss_pred             -ccccccccccccccc---ccccc-cccceeEeeeccccccceeEEeecCceEEEEECC-CCcEEEE-------EeCCCC
Confidence             124455566554422   12222 4567778899999999999999 99999999998 6776666       578999


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-  347 (409)
                      .|++++|+|++ ++|++|+.||.|++||++.....    ..+..           ..+...+.+++|+|++++|++|+. 
T Consensus       228 ~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~----~~~~~-----------~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
T d1tbga_         228 DINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECSSSCEEEEEETT
T ss_pred             CeEEEEECCCC-CEEEEEeCCCeEEEEeecccccc----ccccc-----------ccccCceEEEEECCCCCEEEEEECC
Confidence            99999999999 99999999999999999876531    22211           123467999999999999999985 


Q ss_pred             CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      |.|++||+.+ ++++..+.+|...+               ++++|+||+++|+||+.||+|
T Consensus       292 g~i~iwd~~~-~~~~~~~~~H~~~V---------------~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         292 FNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSCE
T ss_pred             CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEeCCCCEEEEEccCCEE
Confidence            9999999986 89999999998876               699999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-37  Score=269.91  Aligned_cols=279  Identities=16%  Similarity=0.280  Sum_probs=229.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++|+|+|++++||||+.||+|+|||+.+++                           .+..+.+|.       
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~---------------------------~~~~~~~h~-------   59 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------FERTLKGHT-------   59 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------CCEEECCCS-------
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence            4599999999999999999999999999999998876                           356788998       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.+++|  ++++.+++++..++.+.+|+............+             ........+.+....++.+
T Consensus        60 -----~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  119 (317)
T d1vyhc1          60 -----DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRTMHGH-------------DHNVSSVSIMPNGDHIVSA  119 (317)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEECCCCC-------------SSCEEEEEECSSSSEEEEE
T ss_pred             -----CcEEEEee--ecccccccccccccccccccccccccccccccc-------------cccceeeeccCCCceEEee
Confidence                 89999999  799999999999999999998876654433211             1223334444555555555


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.+++|++++   .+....+ .+|...+.+++|+|++++|+++ .|+.|++|++. .......       +.+|.
T Consensus       120 ~~--d~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~-~~~~~~~-------~~~~~  185 (317)
T d1vyhc1         120 SR--DKTIKMWEVQT---GYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAE-------LREHR  185 (317)
T ss_dssp             ET--TSEEEEEETTT---CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred             cc--CcceeEeeccc---ceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeec-cceeeEE-------EecCC
Confidence            54  88999999976   3445555 7889999999999999999999 99999999998 5555555       56788


Q ss_pred             CceEEEEEeCCCC-------------------CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          268 EVITSAEFHPIYC-------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       268 ~~v~~~~~~p~~~-------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ..+.++.|+|++.                   .++++++.|+.|++||+++++.    +..+             .+|..
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~----~~~~-------------~~~~~  248 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTL-------------VGHDN  248 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEE-------------ECCSS
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE----EEEE-------------eCCCC
Confidence            8888888887541                   4789999999999999998753    2333             34567


Q ss_pred             ceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      .|.+++|+|++++|++|+ ||.|++||+.+ ++++..+.+|...+               ++++|+|++++|++|+.||+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V---------------~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTSE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCe
Confidence            899999999999999987 59999999986 89999999998876               69999999999999999998


Q ss_pred             C
Q 015290          408 N  408 (409)
Q Consensus       408 i  408 (409)
                      |
T Consensus       313 i  313 (317)
T d1vyhc1         313 V  313 (317)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-36  Score=270.67  Aligned_cols=255  Identities=15%  Similarity=0.180  Sum_probs=200.8

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      .++|+|++|+|||++||+|+.||.|+|||..+++                         +..+..+++|.          
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~----------   51 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN----------   51 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS----------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCC----------
Confidence            4789999999999999999999999999998754                         23567889999          


Q ss_pred             eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                        ++|.+|+|  +|++++|++++.|++|++||+.++.......                                     
T Consensus        52 --~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-------------------------------------   90 (371)
T d1k8kc_          52 --GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-------------------------------------   90 (371)
T ss_dssp             --SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred             --CCEEEEEE--CCCCCEEEEEECCCeEEEEeecccccccccc-------------------------------------
Confidence              89999999  7899999999999999999998765443221                                     


Q ss_pred             ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                            +.+|...|.+++|+|+++.|+++ .|+.|++|++......... .   .....|...|
T Consensus        91 ----------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~-~---~~~~~~~~~v  144 (371)
T d1k8kc_          91 ----------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-K---HIKKPIRSTV  144 (371)
T ss_dssp             ----------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-E---EECTTCCSCE
T ss_pred             ----------------------cccccccccccccccccccceeecccCcceeeeeecccccccc-c---cccccccccc
Confidence                                  15688899999999999999999 9999999998843322111 1   1146788999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccc-ccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      .+++|+|++ ++|++|+.|+.|++||............. +..............+|...|.+++|+|+|++|++++. +
T Consensus       145 ~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  223 (371)
T d1k8kc_         145 LSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  223 (371)
T ss_dssp             EEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             ccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC
Confidence            999999999 99999999999999998775432111000 00000000111223567889999999999999999974 9


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      .|++||+.. ++.+..+..|..++               .+++|+||+++|++|+++
T Consensus       224 ~i~iwd~~~-~~~~~~~~~~~~~v---------------~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         224 TVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             EEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEETTS
T ss_pred             cceEEeeec-ccceeeeecccccc---------------eeeeecCCCCEEEEEcCC
Confidence            999999986 88889999888765               699999999999887643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-35  Score=255.20  Aligned_cols=279  Identities=12%  Similarity=0.121  Sum_probs=199.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cCCCcccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~  107 (409)
                      .+|.+.|++++|+||+++||+|+.||.|++||+.+++.                           ...+ .+|.      
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~h~------   55 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------------------NRVFPDVHA------   55 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EECSSCSCS------
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------------EEEEcCCCC------
Confidence            34999999999999999999999999999999988763                           3334 4677      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                            ..|++++|  +|+++ +++++.|+.+++|+............          .............++++.++..
T Consensus        56 ------~~v~~v~~--~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~g~~~~~  116 (299)
T d1nr0a2          56 ------TMITGIKT--TSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAV----------ANKLSSQPLGLAVSADGDIAVA  116 (299)
T ss_dssp             ------SCEEEEEE--CTTSC-EEEEETTTEEEEECSSSSSSCTTSCC----------EEECSSCEEEEEECTTSSCEEE
T ss_pred             ------CcEEEEEe--eccce-eecccceeeEEEeccCCccccccccc----------cccccccccccccccccccccc
Confidence                  89999999  68885 66778899999999875432211100          0001112222333444444443


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      +.   ++.+++|+...     ....   .....+.+++|+|+++++++| .|+.|++||++ .+......      ...|
T Consensus       117 ~~---~~~i~~~~~~~-----~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~-~~~~~~~~------~~~~  178 (299)
T d1nr0a2         117 AC---YKHIAIYSHGK-----LTEV---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVK------TIVH  178 (299)
T ss_dssp             EE---SSEEEEEETTE-----EEEE---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE-TTEEEEEE------EEEC
T ss_pred             cc---ccccccccccc-----cccc---ccccccccccccccccccccccccccccccccc-cccccccc------cccc
Confidence            32   56889998532     2222   233457889999999999999 99999999998 44443321      3568


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...|++++|+|++ ++|++++.|+.|++||+.++...    ...          ..+.+|...|++++|+|++++|++|+
T Consensus       179 ~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~----~~~----------~~~~~h~~~v~~l~~s~~~~~l~sgs  243 (299)
T d1nr0a2         179 PAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFEL----AHT----------NSWTFHTAKVACVSWSPDNVRLATGS  243 (299)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEE----SCC----------CCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccc-ccccccccccccccccccccccc----ccc----------ccccccccccccccccccccceEEEc
Confidence            8899999999999 99999999999999999875421    111          12345678999999999999999997


Q ss_pred             c-CeEEEEEccCCCcceEEEe--cccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          347 Y-MNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       347 ~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      . +.|++||+++ +.....+.  .|....               ....+++++++|++|+.||+|
T Consensus       244 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         244 LDNSVIVWNMNK-PSDHPIIIKGAHAMSS---------------VNSVIWLNETTIVSAGQDSNI  292 (299)
T ss_dssp             TTSCEEEEETTC-TTSCCEEETTSSTTSC---------------EEEEEEEETTEEEEEETTSCE
T ss_pred             CCCEEEEEECCC-CCcceEEEecCCCCCc---------------EEEEEECCCCEEEEEeCCCEE
Confidence            5 9999999986 33322222  222211               234455678899999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-34  Score=247.32  Aligned_cols=252  Identities=13%  Similarity=0.116  Sum_probs=193.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|++++|+|+|++||+|+.||.|+|||+.+....                         ....+.+|.       
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~-------  102 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS-------  102 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-------------------------ccccccccc-------
Confidence            459999999999999999999999999999999876531                         335578888       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce-e
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-G  185 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  185 (409)
                           ++|.+++|  ++++++|++++.  ++.+++|++.+++.......+.             ..+..+.+++++.+ +
T Consensus       103 -----~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~-------------~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1         103 -----GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA-------------RAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS-------------SCEEEEEECSSSSCEE
T ss_pred             -----Cccccccc--cccccccccccccccccccccccccccccccccccc-------------cccccccccccceeee
Confidence                 89999999  799999999875  4679999999876655433221             12233334444443 4


Q ss_pred             ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (409)
                      ++++.  |+.|++||+++   .++...+ ..|...|++++|+|++++++++ .|+.|++||+. .+.....+........
T Consensus       163 ~sgs~--d~~i~i~d~~~---~~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         163 ISGSD--DNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             EEEET--TSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTSSSC
T ss_pred             ccccc--ccccccccccc---ccccccc-ccccccccccccCccccccccccccccccccccc-cccccccccccccccc
Confidence            44443  88999999986   4555555 7899999999999999999999 99999999998 6666666655555667


Q ss_pred             CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (409)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  344 (409)
                      +|...|++++|+|++ ++|++|+.||.|+|||+++++.    .+.+..|.          .+...+.++.|  ++++|++
T Consensus       236 ~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~----~~~l~~~~----------~~~~~~~~~~~--~~~~l~s  298 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV----EKTIPVGT----------RIEDQQLGIIW--TKQALVS  298 (311)
T ss_dssp             SSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEECCS----------SGGGCEEEEEE--CSSCEEE
T ss_pred             cccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEECCC----------CccceEEEEEe--cCCEEEE
Confidence            899999999999999 9999999999999999998764    24443321          01123444444  4567887


Q ss_pred             ee-cCeEEEEEcc
Q 015290          345 RD-YMNLKLWDIR  356 (409)
Q Consensus       345 g~-~~~v~iwd~~  356 (409)
                      ++ ||.|++||++
T Consensus       299 ~s~dG~i~~wd~d  311 (311)
T d1nr0a1         299 ISANGFINFVNPE  311 (311)
T ss_dssp             EETTCCEEEEETT
T ss_pred             EECCCEEEEEeCC
Confidence            76 5999999973

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=241.63  Aligned_cols=240  Identities=10%  Similarity=0.112  Sum_probs=193.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|.+++|+|++++||+|+.||.|++||+.....                         +....+.+|.       
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~-------  141 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-------------------------RIKAELTSSA-------  141 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------EEEEEEECSS-------
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc-------------------------cccccccccc-------
Confidence            45889999999999999999999999999999876542                         2456677888       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..|.++.|  ++++.++++++.|+.|++|++.+++.......+.             ..+....+++....++.+
T Consensus       142 -----~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~~~~~  201 (337)
T d1gxra_         142 -----PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-------------DGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSEEEEE
T ss_pred             -----cccccccc--cccccccccccccccccccccccccccccccccc-------------cccccccccccccccccc
Confidence                 88999999  7999999999999999999999887665443221             122233344555566655


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                      ..  ++.+++||+++   .+.+..+  .|...|.+++|+|+++++++| .|+.+++||++ ......        ...|.
T Consensus       202 ~~--d~~v~i~d~~~---~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--------~~~~~  265 (337)
T d1gxra_         202 GL--DNTVRSWDLRE---GRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN-KPDKYQ--------LHLHE  265 (337)
T ss_dssp             ET--TSEEEEEETTT---TEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SSCEEE--------ECCCS
T ss_pred             cc--ccccccccccc---ceeeccc--ccccceEEEEEcccccccceecccccccccccc-cccccc--------ccccc
Confidence            54  89999999976   3444443  578899999999999999999 99999999998 444433        35688


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~  347 (409)
                      ..|++++|+|++ ++|++++.||.|++||+.+++..    ...              .|...|.+++|+|++++|++|++
T Consensus       266 ~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~~----~~~--------------~~~~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         266 SCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI----FQS--------------KESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEE--------------ECSSCEEEEEECTTSCEEEEEET
T ss_pred             cccceEEECCCC-CEEEEEeCCCeEEEEECCCCCEE----EEc--------------cCCCCEEEEEEeCCCCEEEEEeC
Confidence            999999999999 99999999999999999887531    222              23578999999999999999874


Q ss_pred             -CeEEEEEc
Q 015290          348 -MNLKLWDI  355 (409)
Q Consensus       348 -~~v~iwd~  355 (409)
                       +.|+|||+
T Consensus       327 D~~I~vWdl  335 (337)
T d1gxra_         327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence             99999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-33  Score=243.65  Aligned_cols=283  Identities=13%  Similarity=0.239  Sum_probs=200.8

Q ss_pred             ccCCCcE-EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        29 ~~h~~~v-~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .+|.+.| +|++|  ++++||+|+.||+|+|||+.+++                           ++..+.+|.      
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~------   53 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------   53 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE---------------------------EEEEEECCS------
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEECCC------
Confidence            3487765 66665  58899999999999999998776                           578899999      


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc----------
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH----------  177 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  177 (409)
                            ++|++++|  +++ .+|++++.|++|++|++.........................+...+...          
T Consensus        54 ------~~V~~l~~--s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          54 ------GGVWALKY--AHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             ------SCEEEEEE--ETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             ------CCEEEEEE--cCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEE
Confidence                  89999999  565 58999999999999999877654433322211110000000000000000          


Q ss_pred             ---------------------C---------------------CCCCceeecccccccceeEEEecCCcccceeeeeecc
Q 015290          178 ---------------------N---------------------PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH  215 (409)
Q Consensus       178 ---------------------~---------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  215 (409)
                                           .                     .+....++.+  ..++.+++||+..   .+.+... .
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~d~~i~~~d~~~---~~~~~~~-~  198 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG--SYDNTLIVWDVAQ---MKCLYIL-S  198 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEE--ETTSCEEEEETTT---TEEEEEE-C
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeee--cccceeeeeeccc---ccceeee-e
Confidence                                 0                     0000111111  2356788888865   3444444 6


Q ss_pred             ccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290          216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i  294 (409)
                      ++...+.++.++|+++.++++ .|+.|++||++ .+..+..       +.+|...|.++++++   ++|++|+.||.|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~-------~~~h~~~v~~~~~~~---~~l~~~~~dg~i~i  267 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYT-------LQGHTALVGLLRLSD---KFLVSAAADGSIRG  267 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TCCEEEE-------ECCCSSCCCEEEECS---SEEEEECTTSEEEE
T ss_pred             ccccccccccccccceeeecccccceEEeeecc-ccccccc-------ccccccccccccccc---ceeeeeeccccccc
Confidence            777888999999999999999 99999999999 6666665       678999999999874   68999999999999


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceee-eEeccCCCEEEEeecCeEEEEEccCCCcceE-EEecccCcc
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSRDYMNLKLWDIRMDSTPVA-TFKIHEHLR  372 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~-~~~~~~~~~  372 (409)
                      ||+++..      +.+..             |...+.+ ..+++++++|++|+|+.|+|||+++ ++++. .+.+|...+
T Consensus       268 wd~~~~~------~~~~~-------------~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~t-g~~~~~~~~~~~~~V  327 (355)
T d1nexb2         268 WDANDYS------RKFSY-------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRS-GKLVHANILKDADQI  327 (355)
T ss_dssp             EETTTCC------EEEEE-------------ECTTCCCCCEEEECSSEEEEEETTEEEEEETTT-CCBCCSCTTTTCSEE
T ss_pred             ccccccc------eeccc-------------ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCC-CCEEEEEecCCCCCE
Confidence            9998754      22323             2234444 4567888999999899999999986 77664 455666654


Q ss_pred             cccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                                     ++++|+|+ .++++++.||++
T Consensus       328 ---------------~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         328 ---------------WSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             ---------------EEEEEETT-EEEEEEESSSCE
T ss_pred             ---------------EEEEEcCC-eEEEEEECCCcE
Confidence                           69999987 578889999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-32  Score=239.23  Aligned_cols=297  Identities=11%  Similarity=0.085  Sum_probs=208.6

Q ss_pred             CCcEEEEEECCCCCEEEEEecCC-eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      ...+++++|+|+++.||+++.+. .|+.|+......                         ..+..+.+|..        
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~gh~~--------   63 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV-------------------------PPVVQFTGHGS--------   63 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS-------------------------CSEEEECTTTT--------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc-------------------------cceEEEeCCCC--------
Confidence            34568999999999999886553 345565443322                         23556777751        


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         ..|++++|+|..++.+|++|+.||+|++||+..+............     .+....+.+....+++++..++.++.
T Consensus        64 ---~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          64 ---SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS-----EFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             ---SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE-----EEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             ---CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccc-----ccccccCcEEEEEECCCCCccceeec
Confidence               5799999965557889999999999999999765433222111000     01112233445556677777776666


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      ..++.+++|+.++   ++++..+ .+|...|.+++|+|+++. ++++ .|+.+++||.. ..+....+    .....|..
T Consensus       136 ~~~~~~~~~~~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~-~~~~~~~~----~~~~~~~~  206 (325)
T d1pgua1         136 GRDNFGVFISWDS---GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSASD----RTHHKQGS  206 (325)
T ss_dssp             CSSCSEEEEETTT---CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEEE----CSSSCTTC
T ss_pred             cccceEEEEeecc---cccceee-eecccccccccccccccceEEEeeccccccccccc-ccccceec----ccccCCCC
Confidence            6677899998875   4556655 789999999999999876 5667 89999999988 44433332    12467888


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec---cCCCEEEEe
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---NDGQHLLSR  345 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~g~~l~sg  345 (409)
                      .|++++|+|++..+|++++.|+.|++||+++++.    +..+..             |..++..+.|+   |+|++|+++
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~-------------~~~~v~~~~~s~~~~dg~~l~s~  269 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIED-------------DQEPVQGGIFALSWLDSQKFATV  269 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCB-------------TTBCCCSCEEEEEESSSSEEEEE
T ss_pred             ccEEeeeccccceeccccccccceeeeeeccccc----cccccc-------------cccccccceeeeeccCCCEEEEE
Confidence            9999999997548999999999999999988764    233433             34455555554   689999998


Q ss_pred             e-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      + |+.|+|||+++ ++++..+..|.......           ..++.|.++ .+|+++|.||+|
T Consensus       270 s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~l~s~s~dg~i  320 (325)
T d1pgua1         270 GADATIRVWDVTT-SKCVQKWTLDKQQLGNQ-----------QVGVVATGN-GRIISLSLDGTL  320 (325)
T ss_dssp             ETTSEEEEEETTT-TEEEEEEECCTTCGGGC-----------EEEEEEEET-TEEEEEETTSCE
T ss_pred             eCCCeEEEEECCC-CCEEEEEEecCCcccCe-----------EEEEEECCC-CEEEEEECCCEE
Confidence            7 59999999986 88999888777654211           023444444 478899999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-32  Score=237.30  Aligned_cols=303  Identities=8%  Similarity=0.026  Sum_probs=200.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|++.|++|+|+|++++||+|+.||+|+|||+++...                       .. .+....+|.        
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-----------------------~~-~~~~~~~h~--------   56 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------------------NV-DLLQSLRYK--------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------------------EE-EEEEEEECS--------
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-----------------------ce-EEEEecCCC--------
Confidence            4899999999999999999999999999999987653                       11 122334677        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ++|.+++|.| .++.+|++|+.|++|++|++..+..............            ...........+..+.
T Consensus        57 ----~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~  119 (342)
T d1yfqa_          57 ----HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG------------ICRICKYGDDKLIAAS  119 (342)
T ss_dssp             ----SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSC------------EEEEEEETTTEEEEEE
T ss_pred             ----CCEEEEEEeC-CCCCEEEEcccccceeeeecccccccccccccccccc------------cccccccccccccccc
Confidence                8999999963 4466899999999999999987765544332221111            1111111222233322


Q ss_pred             ccccceeEEEecCCcccceeeeeeccc--cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                        .++.+++||++..............  .......+.+.+.+..++++ .|+.|++||++.........     ....+
T Consensus       120 --~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~~~~~  192 (342)
T d1yfqa_         120 --WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-----EESGL  192 (342)
T ss_dssp             --TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE-----EECSC
T ss_pred             --cccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee-----eeccc
Confidence              2789999998653322222211122  22334566777888899999 99999999998333222111     02234


Q ss_pred             cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ...+.+..+.+.....+++++.||.+.+|+................  ..........+|...+++++|+|++++||+|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~  270 (342)
T d1yfqa_         193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred             ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee--eeeeeccCCCcccccceeEEecCCccEEEEEC
Confidence            4456666666654489999999999999998764322111110000  00111122345677899999999999999997


Q ss_pred             c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       347 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                      . |.|++||+++ ++.+..+..+...                ..++|+|+|++|++++.|++
T Consensus       271 ~Dg~v~vWD~~~-~~~l~~~~~~~~~----------------~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         271 SDGIISCWNLQT-RKKIKNFAKFNED----------------SVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             TTSCEEEEETTT-TEEEEECCCCSSS----------------EEEEEEECSSEEEEEEECTH
T ss_pred             CCCEEEEEECCC-CcEEEEecCCCCC----------------EEEEEEeCCCEEEEEEcCCc
Confidence            4 9999999986 7777777654433                37899999999999888864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-32  Score=243.31  Aligned_cols=300  Identities=11%  Similarity=0.082  Sum_probs=185.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|.++++++  ++|++|+.|++|+|||..+.+...                     ..........|...      
T Consensus        12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~---------------------~~~~~~~~~~~~~~------   62 (393)
T d1sq9a_          12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------------------PKDKSYSHFVHKSG------   62 (393)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC---------------------GGGGEEEEECCTTC------
T ss_pred             cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc---------------------ccceeEeeeeccCC------
Confidence            4999999999874  699999999999999987654310                     00011112223200      


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC--C---CCCce
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--P---PSFAH  184 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~  184 (409)
                      +.+......+... ..++.++++++.||.|++|++............... ..  .............+  .   ....+
T Consensus        63 ~~~~~~~~~~~~~-~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  138 (393)
T d1sq9a_          63 LHHVDVLQAIERD-AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LL--DSDMKKHSFWALKWGASNDRLLSHR  138 (393)
T ss_dssp             EEEEEEEEEEETT-TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CS--CTTGGGSCEEEEEEECCC----CEE
T ss_pred             ceEeeeEeeeccC-CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccc-ee--eeccCCCceEEEEEecCCCcccccE
Confidence            0000111222221 123346788999999999998644321111100000 00  00001111111111  1   11233


Q ss_pred             eecccccccceeEEEecCCcccce--------------eeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290          185 GYHLEWTENMATKIANVGNSVHAR--------------CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (409)
                      +..+.  .++.+++|++.......              ........+...+.+++|+|++ +|++| .|++|++||++ .
T Consensus       139 ~~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~-~  214 (393)
T d1sq9a_         139 LVATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS-T  214 (393)
T ss_dssp             EEEEE--TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-T
T ss_pred             EEEEc--CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec-c
Confidence            33333  38899999985321100              0011113455668999999998 88899 99999999998 6


Q ss_pred             CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      ++.+..+... ..+.+|...|++++|+|+| ++|++|+.|+   .|++||+++++..    ..+............+.+|
T Consensus       215 ~~~~~~~~~~-~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~----~~l~~~~~~~~~~~~~~gH  288 (393)
T d1sq9a_         215 LRPLYNFESQ-HSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAH  288 (393)
T ss_dssp             TEEEEEEECC-C---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSB
T ss_pred             cccccccccc-cccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceee----eeeccccccccceeeeecc
Confidence            6665554322 3467899999999999999 9999999887   4999999987642    3333322233344556789


Q ss_pred             ccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCccc
Q 015290          327 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP  373 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~  373 (409)
                      ...|++++|+||+++|++|+ |++|+|||+++ ++++.++.+|...+.
T Consensus       289 ~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIE  335 (393)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCS
T ss_pred             cCceeeeccCCCCCeeEEECCCCEEEEEECCC-CCEEEEECCcCCccc
Confidence            99999999999999999998 59999999987 899999999988764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-31  Score=232.28  Aligned_cols=288  Identities=16%  Similarity=0.223  Sum_probs=197.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      .+|.+.|.+ +++++|++||||+.||+|+|||+.+++                           ++..+.+|.       
T Consensus        13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~~~~h~-------   57 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT-------   57 (342)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-------
T ss_pred             CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence            359998865 366679999999999999999998776                           577889999       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccc-----------------cccc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL-----------------LAEK  171 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  171 (409)
                           +.|.+++|  +++  +|++++.|+++++|+................ +......                 ...+
T Consensus        58 -----~~V~~v~~--~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~  127 (342)
T d2ovrb2          58 -----GGVWSSQM--RDN--IIISGSTDRTLKVWNAETGECIHTLYGHTST-VRCMHLHEKRVVSGSRDATLRVWDIETG  127 (342)
T ss_dssp             -----SCEEEEEE--ETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEEETTEEEEEETTSEEEEEESSSC
T ss_pred             -----CCEEEEEe--CCC--ccccceecccccccccccccceeccccccee-EeeeecccccccccccceeEEEeecccc
Confidence                 89999999  454  9999999999999998876544333221111 0000000                 0000


Q ss_pred             CceeccC---------CCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeE
Q 015290          172 NFMNEHN---------PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI  241 (409)
Q Consensus       172 ~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i  241 (409)
                      .......         ......+..+  ..++.+++|+...   ..++..+ .+|...+..+.  +++.+++++ .||.|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~~~d~~~---~~~~~~~-~~~~~~~~~~~--~~~~~l~s~~~dg~i  199 (342)
T d2ovrb2         128 QCLHVLMGHVAAVRCVQYDGRRVVSG--AYDFMVKVWDPET---ETCLHTL-QGHTNRVYSLQ--FDGIHVVSGSLDTSI  199 (342)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCEEEE--ETTSCEEEEEGGG---TEEEEEE-CCCSSCEEEEE--ECSSEEEEEETTSCE
T ss_pred             cceeeeecccccceeeccccceeeee--cCCCeEEEeeccc---ceeeEEE-cCccccccccc--CCCCEEEEEeCCCeE
Confidence            0000000         0011111122  3478999999865   3445554 67766655554  468899999 99999


Q ss_pred             EEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcc
Q 015290          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (409)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  321 (409)
                      ++||++ ....+..       +.+|...+.++++++   ++|++++.|+.|++||+...+..    ..+..         
T Consensus       200 ~~~d~~-~~~~~~~-------~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~----~~~~~---------  255 (342)
T d2ovrb2         200 RVWDVE-TGNCIHT-------LTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCL----QTLQG---------  255 (342)
T ss_dssp             EEEETT-TCCEEEE-------ECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEE----EEECS---------
T ss_pred             EEeecc-cceeeeE-------ecccccceeEEecCC---CEEEEEcCCCEEEEEeccccccc----ccccc---------
Confidence            999999 6666665       577888888888764   68999999999999999886532    22222         


Q ss_pred             cccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          322 FFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       322 ~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                       ...|...+.++.++  ++++++|++ |.|++||+++ ++.+..+.......          ..-.|++++|+|++.+||
T Consensus       256 -~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t-g~~i~~~~~~~~~~----------~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         256 -PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGG----------SGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             -TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGG----------GTCEEEEEEECSSEEEEE
T ss_pred             -cceeeeceeecccC--CCeeEEEcCCCEEEEEECCC-CCEEEEEecccCCC----------CCCCEEEEEECCCCCEEE
Confidence             12334566666665  568998875 9999999986 88888775322110          001137999999999999


Q ss_pred             EcccCCC
Q 015290          401 TGSYRRD  407 (409)
Q Consensus       401 s~s~dg~  407 (409)
                      +|+.||+
T Consensus       322 ~g~~dGt  328 (342)
T d2ovrb2         322 VGSRNGT  328 (342)
T ss_dssp             EECSSSS
T ss_pred             EEeCCCC
Confidence            9999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-31  Score=236.95  Aligned_cols=213  Identities=11%  Similarity=0.119  Sum_probs=166.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.++|++++|+|++++||+|+.|++|+|||+.++..                         +....+.+|.        
T Consensus        49 gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~-------------------------~~~~~~~~~~--------   95 (371)
T d1k8kc_          49 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN--------   95 (371)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS--------
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc-------------------------cccccccccc--------
Confidence            4999999999999999999999999999999986542                         2344567777        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.+++|  +|+++.|++++.|++|++|++.........                                    
T Consensus        96 ----~~v~~i~~--~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~------------------------------------  133 (371)
T d1k8kc_          96 ----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVC------------------------------------  133 (371)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEE------------------------------------
T ss_pred             ----cccccccc--ccccccceeecccCcceeeeeecccccccc------------------------------------
Confidence                89999999  799999999999999999998765322111                                    


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec-----C----
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-----K----  259 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~-----~----  259 (409)
                                           ......|...|.+++|+|++++|++| .|+.|++|+... .........     .    
T Consensus       134 ---------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~  191 (371)
T d1k8kc_         134 ---------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFG  191 (371)
T ss_dssp             ---------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC-TTTSCCCCCBTTBSCCCTT
T ss_pred             ---------------------cccccccccccccccccccccceeccccCcEEEEEeecc-Cccccccccccccccccce
Confidence                                 01125788899999999999999999 999999999863 211100000     0    


Q ss_pred             --CCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc
Q 015290          260 --PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (409)
Q Consensus       260 --~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  337 (409)
                        ......|...|.+++|+|++ ++|++++.|+.|++||+..++.    +..+.             .|..+|.+++|+|
T Consensus       192 ~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~----~~~~~-------------~~~~~v~s~~fs~  253 (371)
T d1k8kc_         192 ELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLA-------------SETLPLLAVTFIT  253 (371)
T ss_dssp             CEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEE-------------CSSCCEEEEEEEE
T ss_pred             eeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccc----eeeee-------------cccccceeeeecC
Confidence              01246788899999999999 9999999999999999987643    22232             3467899999999


Q ss_pred             CCCEEEEeecCeEEEEEccC
Q 015290          338 DGQHLLSRDYMNLKLWDIRM  357 (409)
Q Consensus       338 ~g~~l~sg~~~~v~iwd~~~  357 (409)
                      ++++|++|.|+.+++|....
T Consensus       254 d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         254 ESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             TTEEEEEETTSSCEEEEEET
T ss_pred             CCCEEEEEcCCceEEEEeeC
Confidence            99999999887777766543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-30  Score=232.68  Aligned_cols=252  Identities=14%  Similarity=0.189  Sum_probs=188.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|++++|+|++++|++|+.||.|++|+...++                           .+..+.+|.        
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~---------------------------~~~~~~~h~--------  163 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE--------  163 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccc---------------------------ccccccccc--------
Confidence            478889999999999999999999999999998765                           466778898        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.++.|  ++++..+++++.++.+++||..+...........             ..........+..+++.+.
T Consensus       164 ----~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~  224 (388)
T d1erja_         164 ----QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-------------GVTTVAVSPGDGKYIAAGS  224 (388)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-------------CEEEEEECSTTCCEEEEEE
T ss_pred             ----cccccccc--ccccccccccccceeeeeeecccccccccccccc-------------ccccccccCCCCCeEEEEc
Confidence                89999999  7899999999999999999998876655433211             1111222333455666655


Q ss_pred             ccccceeEEEecCCcccceeee---eeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecC-----C
Q 015290          190 WTENMATKIANVGNSVHARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-----P  260 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-----~  260 (409)
                      .  ++.+++|+..+......+.   ....+|...|.+++|+|++++|+++ .|+.|++||++. ..........     .
T Consensus       225 ~--d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~  301 (388)
T d1erja_         225 L--DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-ANNKSDSKTPNSGTCE  301 (388)
T ss_dssp             T--TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEE
T ss_pred             C--CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC-Ccccccccccccccee
Confidence            4  8899999998754333221   1125788999999999999999999 999999999973 2221111000     0


Q ss_pred             CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE------
Q 015290          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK------  334 (409)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------  334 (409)
                      .....|...|.+++|+|++ ++|++|+.||.|++||+++++.    +..+.             +|...|.+++      
T Consensus       302 ~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~l~-------------~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         302 VTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP----LLMLQ-------------GHRNSVISVAVANGSS  363 (388)
T ss_dssp             EEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE----EEEEE-------------CCSSCEEEEEECSSCT
T ss_pred             eecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEe-------------CCCCCEEEEEEecCcc
Confidence            1135678899999999999 9999999999999999998764    23333             4466777765      


Q ss_pred             eccCCCEEEEee-cCeEEEEEcc
Q 015290          335 FANDGQHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       335 ~s~~g~~l~sg~-~~~v~iwd~~  356 (409)
                      |+|++++|++|+ ||+|+|||++
T Consensus       364 ~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         364 LGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCEEEEEeee
Confidence            578999999987 5999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=213.67  Aligned_cols=266  Identities=15%  Similarity=0.232  Sum_probs=196.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      |...|+|++|  ||++||+|+.||+|+|||+.+++                           ++..+.+|.         
T Consensus        14 ~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~---------   55 (293)
T d1p22a2          14 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT---------   55 (293)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS---------
T ss_pred             CCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC---------
Confidence            7889999765  68999999999999999998776                           578899999         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                         +.|++++|    ++++|++|+.|+.|++|++..+............              ..... .....+..+  
T Consensus        56 ---~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~--  111 (293)
T d1p22a2          56 ---GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--------------VLHLR-FNNGMMVTC--  111 (293)
T ss_dssp             ---SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--------------EEEEE-CCTTEEEEE--
T ss_pred             ---CCEeeeec----ccceeecccccccccccccccccccccccccccc--------------ccccc-ccccceeec--
Confidence               89999987    5679999999999999999988665543322111              00000 111112222  


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
                      ..++.+++|+............+ ..|...+..+.+.+  ..++++ .|+.|++||++ ..+.+..       +.++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~-~~~~~~~-------~~~~~~~  180 (293)
T d1p22a2         112 SKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTS-TCEFVRT-------LNGHKRG  180 (293)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETT-TCCEEEE-------EECCSSC
T ss_pred             ccccceeEeeccccccccccccc-cccccccccceecc--cccccccCCCceeeecCC-CCcEEEE-------Ecccccc
Confidence            22778999999876655555554 67888888877764  457777 99999999999 6666655       5667778


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~  348 (409)
                      +..+.++  + .++++++.||.|++||+++...    +..+..             |...+.  .+++++.+|++|+ |+
T Consensus       181 v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~-------------~~~~v~--~~~~~~~~l~sg~~dg  238 (293)
T d1p22a2         181 IACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEG-------------HEELVR--CIRFDNKRIVSGAYDG  238 (293)
T ss_dssp             EEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECC-------------CSSCEE--EEECCSSEEEEEETTS
T ss_pred             cccccCC--C-CeEEEecCCCEEEEEeccccee----eeeecc-------------cceeee--eccccceEEEEEcCCC
Confidence            8887776  3 6899999999999999988653    122222             234454  4567788999987 49


Q ss_pred             eEEEEEccCC--------CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          349 NLKLWDIRMD--------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       349 ~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .|++||+...        ..++..+.+|...+               ++++|  |+++|+|||.||+|
T Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V---------------~~v~~--d~~~l~s~s~Dg~i  289 (293)
T d1p22a2         239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV---------------FRLQF--DEFQIVSSSHDDTI  289 (293)
T ss_dssp             CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC---------------CCEEE--CSSCEEECCSSSEE
T ss_pred             EEEEEECCCCccccccCCceeeEEecCCCCCE---------------EEEEE--cCCEEEEEecCCEE
Confidence            9999997531        24577888888876               58888  56789999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-30  Score=223.94  Aligned_cols=258  Identities=10%  Similarity=0.043  Sum_probs=185.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.++|++++|+|    |++|+.||+|++||+.++                                ..+|.        
T Consensus        11 gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~--------   46 (287)
T d1pgua2          11 GHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------HQDHS--------   46 (287)
T ss_dssp             CCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------------------------ECCCC--------
T ss_pred             CCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------------------------CCCCC--------
Confidence            4999999999997    899999999999998653                                36787        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..|.++.|  ++ +..+++++.|+++++|++...+....                    .......+++..+..+.
T Consensus        47 ----~~V~~~~~--~~-~~~~~s~s~D~~v~~w~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~   99 (287)
T d1pgua2          47 ----NLIVSLDN--SK-AQEYSSISWDDTLKVNGITKHEFGSQ--------------------PKVASANNDGFTAVLTN   99 (287)
T ss_dssp             ----SCEEEEEC--CS-TTCCEEEETTTEEEETTEEEEECSSC--------------------EEEEEECSSSEEEEEET
T ss_pred             ----CCEEEEEe--cC-CCeEEEEeeccccccccccccccccc--------------------eeeeeeccCCceEEEee
Confidence                89999999  44 45789999999999999865432110                    01111122223332222


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-CCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (409)
                         ++.+.+|+.....   .+..+  .....  ..++++++..++++ . ++.+++|++. .......+      ...|.
T Consensus       100 ---~~~~~~~~~~~~~---~~~~~--~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~-~~~~~~~~------~~~~~  162 (287)
T d1pgua2         100 ---DDDLLILQSFTGD---IIKSV--RLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDL------KTPLR  162 (287)
T ss_dssp             ---TSEEEEEETTTCC---EEEEE--ECSSC--EEEEEECSSEEEEEETTTSCEEEEETT-EEEEEEEC------SSCCS
T ss_pred             ---cccceeeecccee---eeeec--cccce--eeeeeccCcceeeeccccceeeeeecc-ccceeeee------eeccC
Confidence               4567778776532   33332  12233  34566777788776 4 5679999987 33333221      34577


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC---------
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------  338 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------  338 (409)
                      ..+++++|+|++ .+|++|+.||.|++||+.+++..   ...             +.+|...|.+++|+|+         
T Consensus       163 ~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~---~~~-------------~~~h~~~v~~~~~~p~~~~~~~~~~  225 (287)
T d1pgua2         163 AKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVK---TSR-------------WAFRTSKINAISWKPAEKGANEEEI  225 (287)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE---ECC-------------SCCCSSCEEEEEECCCC------CC
T ss_pred             CceeEEEeccCc-cccccccccccccceeecccccc---ccc-------------ccccccccceeeecccccccccccC
Confidence            889999999999 99999999999999999886531   011             2345778999999875         


Q ss_pred             -CCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          339 -GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       339 -g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                       +.+|++|+ |+.|++||++...+.+..+.+|...+               ++++|+|++ .|++++.||+|
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V---------------~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV---------------NNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE---------------EEEEEEETT-EEEEEETTSCE
T ss_pred             CCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe---------------EEEEECCCC-EEEEEECCCeE
Confidence             46899987 59999999986567777778888876               699999987 58899999976

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.2e-29  Score=216.14  Aligned_cols=241  Identities=13%  Similarity=0.145  Sum_probs=178.4

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (409)
                      ..+.++||.            ++|++|+|  +|++++|++|+.|++|++||+.+++............+.          
T Consensus         4 ~~~~~~GH~------------~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~----------   59 (299)
T d1nr0a2           4 IDQVRYGHN------------KAITALSS--SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT----------   59 (299)
T ss_dssp             EEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE----------
T ss_pred             cceEcCCCC------------CCcEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE----------
Confidence            457789999            89999999  799999999999999999999988776654322222232          


Q ss_pred             ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCce
Q 015290          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC  252 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~  252 (409)
                        .+.+++++.++..+.   |+.+++|+............ ...+...+.+++++|+++.++++.++.+.+|+..   +.
T Consensus        60 --~v~~~~~g~~~~~~~---d~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~  130 (299)
T d1nr0a2          60 --GIKTTSKGDLFTVSW---DDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KL  130 (299)
T ss_dssp             --EEEECTTSCEEEEET---TTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EE
T ss_pred             --EEEeeccceeecccc---eeeEEEeccCCccccccccc-cccccccccccccccccccccccccccccccccc---cc
Confidence              333344444443332   88999999876433222222 2457778899999999998887777899999965   12


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      ...         .....+.+++|+|++ ++|++|+.||.|++||+++++..     ....           ..|...|.+
T Consensus       131 ~~~---------~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~-----~~~~-----------~~~~~~i~~  184 (299)
T d1nr0a2         131 TEV---------PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVS-----EVKT-----------IVHPAEITS  184 (299)
T ss_dssp             EEE---------ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEE-----EEEE-----------EECSSCEEE
T ss_pred             ccc---------ccccccccccccccc-ccccccccccccccccccccccc-----cccc-----------ccccccccc
Confidence            221         123457899999999 99999999999999999876531     1111           234678999


Q ss_pred             eEeccCCCEEEEeec-CeEEEEEccCCCcce---EEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       333 ~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++|+|++++|++++. +.|++||+.. +..+   ..+.+|...+               ++++|+|++++|++|+.||+|
T Consensus       185 ~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~h~~~v---------------~~l~~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         185 VAFSNNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAKV---------------ACVSWSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGG-TTEESCCCCCCCCSSCE---------------EEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccc---------------ccccccccccceEEEcCCCEE
Confidence            999999999999975 9999999975 3322   3344555554               699999999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=214.90  Aligned_cols=252  Identities=15%  Similarity=0.177  Sum_probs=175.1

Q ss_pred             cC-CCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           30 QD-VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        30 ~h-~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      +| ...|++++|+|  ++++||+|+.||+|+|||+..+...       ..+            .......+..|.     
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~-------~~~------------~~~~~~~~~~~~-----  115 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------NSV------------EVNVKSEFQVLA-----  115 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------TEE------------EEEEEEEEECCS-----
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce-------eee------------eccccccccccc-----
Confidence            35 57899999998  6789999999999999999765431       000            111223455666     


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                             ++|.+++|  +++++++++++.  ++.+++|+..+++.......+ .            ..+..+.+++....
T Consensus       116 -------~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~------------~~v~~~~~~~~~~~  173 (325)
T d1pgua1         116 -------GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-S------------QRINACHLKQSRPM  173 (325)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-S------------SCEEEEEECSSSSC
T ss_pred             -------CcEEEEEE--CCCCCccceeeccccceEEEEeecccccceeeeec-c------------cccccccccccccc
Confidence                   89999999  799999988754  678999999888765544321 1            22233333443332


Q ss_pred             -eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290          185 -GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       185 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                       +..++.  |+.+++|++............ ..|...|.+++|+|+ +.+++++ .|+.|++||++ .++.+..      
T Consensus       174 ~~~~~~~--d~~v~~~d~~~~~~~~~~~~~-~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~-~~~~~~~------  243 (325)
T d1pgua1         174 RSMTVGD--DGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFLKY------  243 (325)
T ss_dssp             EEEEEET--TTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEEEE------
T ss_pred             eEEEeec--ccccccccccccccceecccc-cCCCCccEEeeeccccceeccccccccceeeeeec-ccccccc------
Confidence             333332  889999998765444444333 678889999999997 6788888 99999999998 6777666      


Q ss_pred             cCcCccCceEEEEEe---CCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee--eeEec
Q 015290          262 NMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS--DIKFA  336 (409)
Q Consensus       262 ~~~~~~~~v~~~~~~---p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s  336 (409)
                       +.+|...+.++.|+   |++ ++|++++.|+.|+|||+++++.    ++.+..|.           |...+.  ++.+.
T Consensus       244 -l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~-----------~~~~~~~~~~~~~  306 (325)
T d1pgua1         244 -IEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKC----VQKWTLDK-----------QQLGNQQVGVVAT  306 (325)
T ss_dssp             -CCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEE----EEEEECCT-----------TCGGGCEEEEEEE
T ss_pred             -ccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCE----EEEEEecC-----------CcccCeEEEEEEC
Confidence             56666666555554   677 8999999999999999998764    24343311           112233  34444


Q ss_pred             cCCCEEEEee-cCeEEEEEc
Q 015290          337 NDGQHLLSRD-YMNLKLWDI  355 (409)
Q Consensus       337 ~~g~~l~sg~-~~~v~iwd~  355 (409)
                      +++ +|++++ |+.|++||+
T Consensus       307 ~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         307 GNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ETT-EEEEEETTSCEEEEET
T ss_pred             CCC-EEEEEECCCEEEEEEC
Confidence            443 677776 599999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.7e-28  Score=208.54  Aligned_cols=240  Identities=17%  Similarity=0.285  Sum_probs=194.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      ..|.+.|.+++|+|++.+++++..++.+.+|+.....                           ....+.+|.       
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~-------  101 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---------------------------CIRTMHGHD-------  101 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---------------------------EEECCCCCS-------
T ss_pred             eCCCCcEEEEeeecccccccccccccccccccccccc---------------------------ccccccccc-------
Confidence            3489999999999999999999999999999987665                           345567777       


Q ss_pred             cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           ..+.++.|  ++++..+++++.|+.+++||+.+++.......+             ........++++..+++++
T Consensus       102 -----~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1         102 -----HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-------------REWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECTTSSEEEEE
T ss_pred             -----ccceeeec--cCCCceEEeeccCcceeEeecccceeeeEEccC-------------CCcceeeecccCCCEEEEE
Confidence                 78999999  789999999999999999999988766554322             1223334445566667666


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--------------------CeEEEe-cCCeEEEEEcc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--------------------ETFVSA-DDLRINLWNLE  247 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--------------------~~l~~~-~d~~i~lwd~~  247 (409)
                      ..  ++.+++|++..   ......+ .+|...+.+++++|++                    ..++++ .|+.|++||++
T Consensus       162 ~~--d~~v~~~~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         162 SN--DQTVRVWVVAT---KECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             ET--TSCEEEEETTT---CCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             eC--CCeEEEEeecc---ceeeEEE-ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence            54  89999999976   3444444 6788889999888754                    367788 99999999999


Q ss_pred             CCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (409)
                       .+..+..       +.+|...|.+++|+|++ ++|++|+.||.|++||+++++.    +..+             .+|.
T Consensus       236 -~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~-------------~~h~  289 (317)
T d1vyhc1         236 -TGMCLMT-------LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC----MKTL-------------NAHE  289 (317)
T ss_dssp             -TTEEEEE-------EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCC----CEEE-------------ECCS
T ss_pred             -CCcEEEE-------EeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcE----EEEE-------------cCCC
Confidence             6777666       57899999999999999 9999999999999999988753    2333             3457


Q ss_pred             cceeeeEeccCCCEEEEee-cCeEEEEE
Q 015290          328 ASISDIKFANDGQHLLSRD-YMNLKLWD  354 (409)
Q Consensus       328 ~~i~~~~~s~~g~~l~sg~-~~~v~iwd  354 (409)
                      ..|++++|+|++++|++|+ |++|+|||
T Consensus       290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            8999999999999999997 49999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.2e-27  Score=207.78  Aligned_cols=244  Identities=19%  Similarity=0.273  Sum_probs=187.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|+|+++++++|+.|+.+++|+......                       ..+....+.+|.        
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~~~~~~~--------  143 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT--------  143 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS-----------------------CCCEEEEECCCS--------
T ss_pred             cccccEEeeEeeccceeeeeecccceeeccccccccc-----------------------ccccceeccccc--------
Confidence            3889999999999999999999999999999876553                       233455677777        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ........   ..+..++....|.....+..............             ..........+....++.+.
T Consensus       144 ----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         144 ----GYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-------------TGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             ----SCEEEEEE---EETTEEEEEETTTEEEEEETTTTEEEEEEECC-------------SSCEEEEEECTTSSEEEEEE
T ss_pred             ----cccccccc---cccccccccccccccccccccccccccccccc-------------ceeEeeeccccccceeEEee
Confidence                55555555   44568888899999999988766544332211             11122222333344444444


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .  ++.+++||++.   .+++..+ .+|...|++++|+|++++|++| .|+.|++||++ .......+     ....+..
T Consensus       204 ~--d~~v~i~d~~~---~~~~~~~-~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~-~~~~~~~~-----~~~~~~~  271 (340)
T d1tbga_         204 C--DASAKLWDVRE---GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLR-ADQELMTY-----SHDNIIC  271 (340)
T ss_dssp             T--TTEEEEEETTT---TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE-----CCTTCCS
T ss_pred             c--CceEEEEECCC---CcEEEEE-eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec-cccccccc-----ccccccC
Confidence            3  88999999976   4566666 7899999999999999999999 99999999998 55554442     1355677


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .+.+++|+|++ ++|++|+.||.|++||+.+++.    +..+             .+|..+|++++|+|++++|++|+ |
T Consensus       272 ~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~----~~~~-------------~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         272 GITSVSFSKSG-RLLLAGYDDFNCNVWDALKADR----AGVL-------------AGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             CEEEEEECSSS-CEEEEEETTSCEEEEETTTCCE----EEEE-------------CCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ceEEEEECCCC-CEEEEEECCCEEEEEECCCCcE----EEEE-------------cCCCCCEEEEEEeCCCCEEEEEccC
Confidence            89999999999 9999999999999999988653    2333             44578999999999999999997 5


Q ss_pred             CeEEEEE
Q 015290          348 MNLKLWD  354 (409)
Q Consensus       348 ~~v~iwd  354 (409)
                      |.|+|||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.7e-27  Score=209.54  Aligned_cols=279  Identities=11%  Similarity=0.095  Sum_probs=167.2

Q ss_pred             eeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                      ...++|.            +.|.+|++  +  ++++++++.|++|++||..+.+..........................
T Consensus         8 ~~~~~H~------------~~I~~v~~--~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (393)
T d1sq9a_           8 NAGKAHD------------ADIFSVSA--C--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA   71 (393)
T ss_dssp             EESSCSS------------SCEEEEEE--C--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEE
T ss_pred             ecCCccc------------CccEEEEE--e--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEee
Confidence            4568898            89999998  3  359999999999999997654321100000000000000000000000


Q ss_pred             eccCCCCCceeecccccccceeEEEecCCcccceeeeee------ccccccceeEEEeCCC-----CCeEEEe-cCCeEE
Q 015290          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY------PHAHDFNINSISNNSD-----CETFVSA-DDLRIN  242 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~v~~l~~~~~-----~~~l~~~-~d~~i~  242 (409)
                      ..........++++++  |+.+++|++............      ...+...+..+++.++     +.+++++ .||.++
T Consensus        72 ~~~~~~~~~~~~s~~~--dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~  149 (393)
T d1sq9a_          72 IERDAFELCLVATTSF--SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY  149 (393)
T ss_dssp             EETTTEEEEEEEEEET--TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred             eccCCCCCcEEEEEeC--CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence            0011112233444444  889999988643322211110      1234456677777665     4577788 999999


Q ss_pred             EEEccCCCceee----------eeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccc
Q 015290          243 LWNLEISDQCFN----------IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (409)
Q Consensus       243 lwd~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  312 (409)
                      +|++........          .+.........+...+.+++|+|++  +|++|+.||+|++||+++++..    ..+..
T Consensus       150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~  223 (393)
T d1sq9a_         150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES  223 (393)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC
T ss_pred             EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc
Confidence            999862211100          0000111234456678999999986  8899999999999999987642    22222


Q ss_pred             cccccCCcccccccccceeeeEeccCCCEEEEeec-C---eEEEEEccCCCcceEEEecccCcccccccc-cCCCCccce
Q 015290          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDK  387 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v  387 (409)
                             ...+.+|..+|++++|+|||++|++|++ +   .|++||+.+ ++.+..+............+ -|.+.   |
T Consensus       224 -------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~---V  292 (393)
T d1sq9a_         224 -------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSW---V  292 (393)
T ss_dssp             -------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSC---E
T ss_pred             -------ccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCc---e
Confidence                   2335678899999999999999999963 4   599999986 77777775322211100000 01111   3


Q ss_pred             eeEEEcCCCCeEEEcccCCCC
Q 015290          388 FECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       388 ~~~~~spdg~~l~s~s~dg~i  408 (409)
                      ++++|+||+++|+|||.|++|
T Consensus       293 ~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         293 MSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEEECSSSSEEEEEETTSEE
T ss_pred             eeeccCCCCCeeEEECCCCEE
Confidence            799999999999999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.9e-25  Score=186.81  Aligned_cols=233  Identities=10%  Similarity=0.042  Sum_probs=164.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      .|...|.+++|++++ .+++++.|++|++|++...+.                                  .        
T Consensus        44 ~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~----------------------------------~--------   80 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF----------------------------------G--------   80 (287)
T ss_dssp             CCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC----------------------------------S--------
T ss_pred             CCCCCEEEEEecCCC-eEEEEeecccccccccccccc----------------------------------c--------
Confidence            489999999999765 578999999999999864331                                  1        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ..+..+.+  ++++..++ .+.++.+.+|+..+++...........              ...  ++....++.+.
T Consensus        81 ----~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~v~~  137 (287)
T d1pgua2          81 ----SQPKVASA--NNDGFTAV-LTNDDDLLILQSFTGDIIKSVRLNSPG--------------SAV--SLSQNYVAVGL  137 (287)
T ss_dssp             ----SCEEEEEE--CSSSEEEE-EETTSEEEEEETTTCCEEEEEECSSCE--------------EEE--EECSSEEEEEE
T ss_pred             ----cceeeeee--ccCCceEE-Eeecccceeeeccceeeeeecccccee--------------eee--eccCcceeeec
Confidence                35677888  56664444 556677889998888766554432111              000  11112222222


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                       ..++.+++|++...   +........|...+++++|+|++++|++| .||.|++||+. .+.....      .+.+|..
T Consensus       138 -~~~~~v~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-~~~~~~~------~~~~h~~  206 (287)
T d1pgua2         138 -EEGNTIQVFKLSDL---EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ-SREVKTS------RWAFRTS  206 (287)
T ss_dssp             -TTTSCEEEEETTEE---EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEC------CSCCCSS
T ss_pred             -cccceeeeeecccc---ceeeeeeeccCCceeEEEeccCccccccccccccccceeec-ccccccc------ccccccc
Confidence             12457999998642   22233335678889999999999999999 99999999998 4443322      2678999


Q ss_pred             ceEEEEEeCCC---------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290          269 VITSAEFHPIY---------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (409)
Q Consensus       269 ~v~~~~~~p~~---------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  339 (409)
                      .|.+++|+|.+         ..+|++|+.|+.|++||++.+...   ...             +.+|...|++++|+|++
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---~~~-------------~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---IKA-------------LNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC---EEE-------------TTSSTTCEEEEEEEETT
T ss_pred             ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---EEE-------------eCCCCCCeEEEEECCCC
Confidence            99999998754         268999999999999998764321   122             34567899999999998


Q ss_pred             CEEEEeecCeEEEEEc
Q 015290          340 QHLLSRDYMNLKLWDI  355 (409)
Q Consensus       340 ~~l~sg~~~~v~iwd~  355 (409)
                      .++.+|.|+.|++||+
T Consensus       271 ~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEECCCeEEEEEE
Confidence            6544455799999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=4.8e-25  Score=194.52  Aligned_cols=162  Identities=11%  Similarity=0.087  Sum_probs=132.0

Q ss_pred             CccccCCCcEEEEEECCCCCEEEEEecCC--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (409)
Q Consensus        26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (409)
                      ...+.|...|.+++|+|||++|++++.+.  .|++||..+++                            ...+..|.  
T Consensus        36 ~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----------------------------~~~~~~~~--   85 (360)
T d1k32a3          36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----------------------------AEKFEENL--   85 (360)
T ss_dssp             EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----------------------------EEECCCCC--
T ss_pred             EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----------------------------EEEeeCCC--
Confidence            34456999999999999999998877554  79999998876                            34567777  


Q ss_pred             ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                                ..|.+++|  +|++++|++++.++.+++|++.+++.....                              
T Consensus        86 ----------~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------  123 (360)
T d1k32a3          86 ----------GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVIE------------------------------  123 (360)
T ss_dssp             ----------CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------
T ss_pred             ----------ceEEeeee--cccccccceeccccccccccccccceeeee------------------------------
Confidence                      89999999  899999999999999999999887654331                              


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-----------cCCeEEEEEccCCCce
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQC  252 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-----------~d~~i~lwd~~~~~~~  252 (409)
                                                     ..|...+.+++|+|+|++|+.+           .++.+++||+. .++.
T Consensus       124 -------------------------------~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~~  171 (360)
T d1k32a3         124 -------------------------------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKI  171 (360)
T ss_dssp             -------------------------------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEE
T ss_pred             -------------------------------ecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-cCce
Confidence                                           4566778899999999999853           34568999998 5544


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      ..        +..+...+..++|+|+| ++|++++.++.+++||....
T Consensus       172 ~~--------~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         172 FA--------ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EE--------CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSS
T ss_pred             ee--------ecccccccccccccCCC-CEEEEEeCCCceEccccccc
Confidence            43        34566778899999999 99999999999999997653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-23  Score=184.95  Aligned_cols=250  Identities=13%  Similarity=0.114  Sum_probs=155.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|+|+ .+|++|+.||.|++|+......                           ......+...      
T Consensus        51 ~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~---------------------------~~~~~~~~~~------   96 (355)
T d1nexb2          51 GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC---------------------------THVFEGHNST------   96 (355)
T ss_dssp             CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEE---------------------------EEEECCCSSC------
T ss_pred             CCCCCEEEEEEcCC-CEEEEEeccccccccccccccc---------------------------cccccccccc------
Confidence            49999999999986 5899999999999999987653                           1222222200      


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCC----------------------ccccccc--
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF----------------------PFVSSEN--  165 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------~~~~~~~--  165 (409)
                          ..+....+  .+++.++++++.|+.|++||+..............                      ..+....  
T Consensus        97 ----~~~~~~~~--~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (355)
T d1nexb2          97 ----VRCLDIVE--YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH  170 (355)
T ss_dssp             ----EEEEEEEE--ETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE
T ss_pred             ----cccccccc--ccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc
Confidence                23344444  57888888888888888888865432211100000                      0000000  


Q ss_pred             --------------------------ccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeecccccc
Q 015290          166 --------------------------TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF  219 (409)
Q Consensus       166 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  219 (409)
                                                .............++....+..+.  .++.+++|+.++   ..++..+ .+|..
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~---~~~~~~~-~~h~~  244 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS--MDTTIRIWDLEN---GELMYTL-QGHTA  244 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE--TTSCEEEEETTT---CCEEEEE-CCCSS
T ss_pred             cceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccc--ccceEEeeeccc---ccccccc-ccccc
Confidence                                      000001111112223333333333  378999999976   4455555 78999


Q ss_pred             ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE-EEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA-EFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .|.++++++  ++|++| .||.|++||++ .....         +..|...+.++ .+++++ +++++| .||.|++||+
T Consensus       245 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~-~~~~~---------~~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~  310 (355)
T d1nexb2         245 LVGLLRLSD--KFLVSAAADGSIRGWDAN-DYSRK---------FSYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNL  310 (355)
T ss_dssp             CCCEEEECS--SEEEEECTTSEEEEEETT-TCCEE---------EEEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEET
T ss_pred             ccccccccc--ceeeeeeccccccccccc-cccee---------cccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEEC
Confidence            999999974  689999 99999999998 33322         23355555555 456666 776665 5899999999


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEcc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  356 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~  356 (409)
                      ++++..    ..            .+.+|...|++++|+|+ .++++++ ||.++||.++
T Consensus       311 ~tg~~~----~~------------~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         311 RSGKLV----HA------------NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             TTCCBC----CS------------CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred             CCCCEE----EE------------EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence            987642    11            12345678999999987 4666666 5887776543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.5e-22  Score=171.68  Aligned_cols=272  Identities=14%  Similarity=0.160  Sum_probs=168.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc--CCCcee-------eeeeecC
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST--SHPEYR-------YKTEFQS   99 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~   99 (409)
                      .+|.+.|.+++|+|+  +|++|+.|+.+++|+.......       ............  ..+...       .+..+..
T Consensus        54 ~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  124 (342)
T d2ovrb2          54 VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI-------HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  124 (342)
T ss_dssp             CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEE-------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             eCCCCCEEEEEeCCC--ccccceecccccccccccccce-------ecccccceeEeeeecccccccccccceeEEEeec
Confidence            348999999999974  9999999999999998765431       000000000000  000000       0000000


Q ss_pred             CCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCC
Q 015290          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (409)
Q Consensus       100 h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (409)
                      ....  ....+........ .+  ......+++++.|+.|++||............+...             ...  ..
T Consensus       125 ~~~~--~~~~~~~~~~~~~-~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------------~~~--~~  184 (342)
T d2ovrb2         125 ETGQ--CLHVLMGHVAAVR-CV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-------------VYS--LQ  184 (342)
T ss_dssp             SSCC--EEEEEECCSSCEE-EE--EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC-------------EEE--EE
T ss_pred             cccc--ceeeeecccccce-ee--ccccceeeeecCCCeEEEeecccceeeEEEcCcccc-------------ccc--cc
Confidence            0000  0000011112222 22  245568888899999999998877665543322111             111  11


Q ss_pred             CCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec
Q 015290          180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  258 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~  258 (409)
                      .+...+++++.  |+.|++||++.   .+++..+ .+|...+.++++++  ++|+++ .|+.|++||+. ..+....+  
T Consensus       185 ~~~~~l~s~~~--dg~i~~~d~~~---~~~~~~~-~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~-~~~~~~~~--  253 (342)
T d2ovrb2         185 FDGIHVVSGSL--DTSIRVWDVET---GNCIHTL-TGHQSLTSGMELKD--NILVSGNADSTVKIWDIK-TGQCLQTL--  253 (342)
T ss_dssp             ECSSEEEEEET--TSCEEEEETTT---CCEEEEE-CCCCSCEEEEEEET--TEEEEEETTSCEEEEETT-TCCEEEEE--
T ss_pred             CCCCEEEEEeC--CCeEEEeeccc---ceeeeEe-cccccceeEEecCC--CEEEEEcCCCEEEEEecc-cccccccc--
Confidence            12344555544  89999999976   4555655 78888898888764  689999 99999999998 44444432  


Q ss_pred             CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (409)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  338 (409)
                        .....|...+.++.+++   +++++|+.||.|++||+++++..    +.+..        ....+|...|++++|+|+
T Consensus       254 --~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i----~~~~~--------~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         254 --QGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFI----RNLVT--------LESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             --CSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE----EEEEE--------CTTGGGTCEEEEEEECSS
T ss_pred             --cccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEE----EEEec--------ccCCCCCCCEEEEEECCC
Confidence              11345667777777764   68999999999999999987642    22221        001356778999999999


Q ss_pred             CCEEEEeec-C----eEEEEEccC
Q 015290          339 GQHLLSRDY-M----NLKLWDIRM  357 (409)
Q Consensus       339 g~~l~sg~~-~----~v~iwd~~~  357 (409)
                      +.+||+|++ |    .|++||+..
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999974 6    499999863

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=3.1e-22  Score=180.80  Aligned_cols=307  Identities=10%  Similarity=-0.014  Sum_probs=181.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (409)
Q Consensus        29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (409)
                      +.+...+..++|||||++|++++.||.|++||+.+++..                      ....+....+|.       
T Consensus        58 l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~----------------------~~~~i~~~~~~~-------  108 (426)
T d1hzua2          58 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----------------------KVAEIKIGIEAR-------  108 (426)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------------------EEEEEECCSEEE-------
T ss_pred             EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee----------------------EEEEEeCCCCCc-------
Confidence            334467999999999999999999999999999987641                      000112223444       


Q ss_pred             cceeccceEEEEEEecCCCCEEEE-EeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          109 SLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                           +.+.+++|  +|||+++++ +..++.+++||..++............ +....+ ...+....+..+++...+..
T Consensus       109 -----~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         109 -----SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-VDTQTY-HPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             -----EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC-SSSCCE-ESCCCEEEEEECSSSSEEEE
T ss_pred             -----ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC-ccceee-cCCCceeEEEECCCCCEEEE
Confidence                 66777888  799998755 468899999999998776654432211 001111 11111122222222222221


Q ss_pred             ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                      ... ..+.+.+++.........  . ...+...+..++++|++++++++  .+..+.+++.. .+.....+...     .
T Consensus       180 ~~~-~~~~i~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-----~  249 (426)
T d1hzua2         180 NVK-ETGKVLLVNYKDIDNLTV--T-SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG-----K  249 (426)
T ss_dssp             EET-TTTEEEEEECSSSSSCEE--E-EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT-TTEEEEEEECS-----S
T ss_pred             ecC-CCCeEEEEEeccccceee--E-EeccCCccEeeeECCCCcEEEeeeecccceeeeecc-cccEEEEeccC-----C
Confidence            111 123444444433221111  1 13567778899999999998876  67889999998 66666654322     1


Q ss_pred             ccCceEEEEEeCCCCC--EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          266 LTEVITSAEFHPIYCN--LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      +......+.+.+.+..  ..++.+.|+.+.+|+........   ..+.       ....+.+|...+..++|+|||++|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~---~~~~-------~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWK-------KVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT---TBTS-------EEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             cccccceeeeecCCCCceEEeccCCCceEEEeecccccccc---ccce-------EeEEEecCCCceeEEEcCCCCceEE
Confidence            2222233333333312  22334568889999876643211   1111       1223566788899999999999999


Q ss_pred             E-------ee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          344 S-------RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       344 s-------g~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                      +       +. +++|+|||+.+ ++....+..+.....      ..+..-.|..++|||||++|+
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~------~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWAD------LGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHC------CCSSCCCEEEEEECSSSSEEE
T ss_pred             EeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcc------cCCCCccEEEEEECCCCCEEE
Confidence            5       33 38999999986 665555432221100      000111236889999999774

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.9e-22  Score=168.32  Aligned_cols=239  Identities=13%  Similarity=0.214  Sum_probs=159.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +|.+.|++++|  ++++|++|+.||.|++|++..+..                           ......+.        
T Consensus        53 ~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~---------------------------~~~~~~~~--------   95 (293)
T d1p22a2          53 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM---------------------------LNTLIHHC--------   95 (293)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---------------------------EEEECCCC--------
T ss_pred             cCCCCEeeeec--ccceeecccccccccccccccccc---------------------------cccccccc--------
Confidence            49999999987  578999999999999999987763                           22222222        


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                          ...  ..+  ......++++..++.+++|+...............          ....+......  ......+ 
T Consensus        96 ----~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~--~~~~~~~-  154 (293)
T d1p22a2          96 ----EAV--LHL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG----------HRAAVNVVDFD--DKYIVSA-  154 (293)
T ss_dssp             ----SCE--EEE--ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC----------CSSCEEEEEEE--TTEEEEE-
T ss_pred             ----ccc--ccc--cccccceeecccccceeEeeccccccccccccccc----------cccccccceec--ccccccc-
Confidence                122  223  25666899999999999999886643322111000          00001011100  1111222 


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                       ..|+.+++|++.+   .+++..+ .++...+..+.++  +..++++ .|+.|++||++ ....+..       ..++..
T Consensus       155 -s~d~~i~~~d~~~---~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~-~~~~~~~-------~~~~~~  219 (293)
T d1p22a2         155 -SGDRTIKVWNTST---CEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE-CGACLRV-------LEGHEE  219 (293)
T ss_dssp             -ETTSEEEEEETTT---CCEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT-TCCEEEE-------ECCCSS
T ss_pred             -cCCCceeeecCCC---CcEEEEE-cccccccccccCC--CCeEEEecCCCEEEEEecc-cceeeee-------ecccce
Confidence             2388999999976   3445554 6777788777775  5689998 99999999999 5666655       456667


Q ss_pred             ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~  347 (409)
                      .+..  +++++ .+|++|+.||.|++||+.......    .    .........+.+|...|++++|+  +++|++|+ |
T Consensus       220 ~v~~--~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~----~----~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~D  286 (293)
T d1p22a2         220 LVRC--IRFDN-KRIVSGAYDGKIKVWDLVAALDPR----A----PAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD  286 (293)
T ss_dssp             CEEE--EECCS-SEEEEEETTSCEEEEEHHHHTSTT----S----CTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSS
T ss_pred             eeee--ccccc-eEEEEEcCCCEEEEEECCCCcccc----c----cCCceeeEEecCCCCCEEEEEEc--CCEEEEEecC
Confidence            6654  55666 899999999999999987643210    0    01111233466788999999985  56899987 5


Q ss_pred             CeEEEEE
Q 015290          348 MNLKLWD  354 (409)
Q Consensus       348 ~~v~iwd  354 (409)
                      ++|+|||
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence            9999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=5.3e-23  Score=181.21  Aligned_cols=188  Identities=17%  Similarity=0.169  Sum_probs=149.7

Q ss_pred             EEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (409)
Q Consensus        37 ~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (409)
                      +-.||| ||+++|+++ +|.|.+||+.++..                           . . .+|.            ..
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~---------------------------~-~-~~~~------------~~   44 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV---------------------------L-K-VPEP------------LR   44 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBE---------------------------E-E-CSCC------------SC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcE---------------------------E-E-ccCC------------CC
Confidence            467999 999999987 57999999987652                           2 2 2577            89


Q ss_pred             eEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          116 INRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      |.+++|  +|||+.|++++.+.  .|++||..+++...+                                         
T Consensus        45 v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~-----------------------------------------   81 (360)
T d1k32a3          45 IRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-----------------------------------------   81 (360)
T ss_dssp             EEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEEC-----------------------------------------
T ss_pred             EEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEEe-----------------------------------------
Confidence            999999  89999998876553  799999988765432                                         


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                                           ..|...+.+++|+|++++|+++ .++.+++|++. .+.....       +..|...+.+
T Consensus        82 ---------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~  132 (360)
T d1k32a3          82 ---------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVI-------ERSREAMITD  132 (360)
T ss_dssp             ---------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEE-------EECSSSCCCC
T ss_pred             ---------------------eCCCceEEeeeecccccccceecccccccccccc-ccceeee-------eecccccccc
Confidence                                 5688889999999999999999 99999999998 5655555       4667788899


Q ss_pred             EEEeCCCCCEEEEEe----------CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290          273 AEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (409)
Q Consensus       273 ~~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  342 (409)
                      ++|+|+| ++|+.++          .++.+++||+.+++..    .....              ...+..++|+|||++|
T Consensus       133 ~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~----~~~~~--------------~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         133 FTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF----AATTE--------------NSHDYAPAFDADSKNL  193 (360)
T ss_dssp             EEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE----ECSCS--------------SSBEEEEEECTTSCEE
T ss_pred             hhhccce-eeeeeeccccccceeeccccceeeeccccCcee----eeccc--------------ccccccccccCCCCEE
Confidence            9999999 8888643          3456899999886531    22111              3567889999999999


Q ss_pred             EEeec-CeEEEEEccC
Q 015290          343 LSRDY-MNLKLWDIRM  357 (409)
Q Consensus       343 ~sg~~-~~v~iwd~~~  357 (409)
                      +++++ +.+++||...
T Consensus       194 ~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEESCCCCCEECSSS
T ss_pred             EEEeCCCceEcccccc
Confidence            99875 9999999753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3e-22  Score=174.32  Aligned_cols=263  Identities=9%  Similarity=-0.031  Sum_probs=162.7

Q ss_pred             eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeee--eeccCCCcccccccccccc
Q 015290           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAE  170 (409)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~  170 (409)
                      .+...++|+            +.|++|+|  +|++++|++|+.|++|+|||+..+....  .....+...+.++.+.+. 
T Consensus         3 ~v~~~~~h~------------d~I~~l~f--sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-   67 (342)
T d1yfqa_           3 IVQIEQAPK------------DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-   67 (342)
T ss_dssp             EEECSSCCS------------SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-
T ss_pred             eEEcCCCCC------------CCEEEEEE--eCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC-
Confidence            566778898            89999999  6899999999999999999997653322  111122333333333222 


Q ss_pred             cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (409)
                                ...++++++.  |+.+++|++..........   ..+........+.++...++++ .++.+++||++..
T Consensus        68 ----------~~~~l~sg~~--d~~v~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          68 ----------TDLQIYVGTV--QGEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             ----------SSEEEEEEET--TSCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred             ----------CCCEEEEccc--ccceeeeeccccccccccc---ccccccccccccccccccccccccccccceeecccc
Confidence                      2344555544  8999999998744332222   2333444455566778888888 9999999998732


Q ss_pred             CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                      ..........  .............+.+.+ ..+++++.|+.|++||++............              .+...
T Consensus       133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--------------~~~~~  195 (342)
T d1yfqa_         133 GDGVIAVKNL--NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEES--------------GLKYQ  195 (342)
T ss_dssp             TTBCEEEEES--CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEEC--------------SCSSC
T ss_pred             ccceeeeccc--ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeec--------------ccccc
Confidence            2222111000  011122334566777877 899999999999999998765321111110              11223


Q ss_pred             eeeeEe-ccCCCEEEEee-cCeEEEEEccCCCc-----ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290          330 ISDIKF-ANDGQHLLSRD-YMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (409)
Q Consensus       330 i~~~~~-s~~g~~l~sg~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~  402 (409)
                      +.+..+ ..++..+++++ ++.+.+|++.....     ....+..+...      .........+.+++|+|++++||||
T Consensus       196 ~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~sp~~~~lasg  269 (342)
T d1yfqa_         196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN------LKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC------TTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             eeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec------cCCCcccccceeEEecCCccEEEEE
Confidence            444444 45667888887 59999999864211     11122111111      0112233445799999999999999


Q ss_pred             ccCCCC
Q 015290          403 SYRRDN  408 (409)
Q Consensus       403 s~dg~i  408 (409)
                      +.||+|
T Consensus       270 ~~Dg~v  275 (342)
T d1yfqa_         270 GSDGII  275 (342)
T ss_dssp             ETTSCE
T ss_pred             CCCCEE
Confidence            999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.2e-21  Score=176.69  Aligned_cols=306  Identities=9%  Similarity=-0.028  Sum_probs=178.8

Q ss_pred             CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (409)
Q Consensus        32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (409)
                      ...+..++|||||++|++++.||.|++||+.+++..                      ....+....+|.          
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~----------------------~~~~i~~~~~~~----------  108 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----------------------TVAEIKIGSEAR----------  108 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----------------------EEEEEECCSEEE----------
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce----------------------EEEEEecCCCCC----------
Confidence            357999999999999999999999999999877631                      001112223343          


Q ss_pred             eccceEEEEEEecCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290          112 IEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (409)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (409)
                        +.+.+..|  +|||++| ++++.+++|++||..+++............ ....+ ...+....+..++++..++... 
T Consensus       109 --~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-~~~~~-~~~~~~~~v~~s~dg~~~~vs~-  181 (432)
T d1qksa2         109 --SIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-DEQEY-HPEPRVAAILASHYRPEFIVNV-  181 (432)
T ss_dssp             --EEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-TTCCE-ESCCCEEEEEECSSSSEEEEEE-
T ss_pred             --CeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc-cceec-cCCCceeEEEECCCCCEEEEEE-
Confidence              56666677  8999986 677889999999999998776654322110 11111 1222233333344444333221 


Q ss_pred             cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      ..++.+.+|+...........   ..+...+..++|+|+|++++++  .++.+.++|.. .......+....  ...|..
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~---i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~-~~~~~~~~~~g~--~~~~~~  255 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG--QTPHPG  255 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS--SSBCCT
T ss_pred             ccCCeEEEEEccCCCcceEEE---EcccCccccceECCCCCEEEEeccccceEEEeecc-cceEEEEeccCc--cccccC
Confidence            236789999887643322222   2345667899999999988776  67889999998 566555543322  223444


Q ss_pred             ceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCcccccccc---cccccc-------ccccCCc-----ccccccccceee
Q 015290          269 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSA---RILRDA-------AESHGSK-----SFFTEIIASISD  332 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~---~~~~~~-------~~~~~~~-----~~~~~~~~~i~~  332 (409)
                      ......+...+ ...++.. .++.+.+|+..........-   .....+       ...+...     ..+..|.....+
T Consensus       256 ~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s  334 (432)
T d1qksa2         256 RGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS  334 (432)
T ss_dssp             TCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             cccceecCCCC-ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeE
Confidence            44455555544 4444443 47788888876543211100   000000       0000000     011222233344


Q ss_pred             eEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       333 ~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      +++ ||++.|++++. +.+++||+.+ +..+   ..|...+               ..++|||||++|+.+.
T Consensus       335 v~v-pDg~~la~~s~d~~~k~w~~~~-~~~l---~~~~~~v---------------~~~~fS~DG~~v~~S~  386 (432)
T d1qksa2         335 VAV-FDIKAMTGDGSDPEFKTLPIAE-WAGI---TEGQPRV---------------VQGEFNKDGTEVWFSV  386 (432)
T ss_dssp             EEE-EEGGGCCCSSSCCCEEEECHHH-HHTC---CSSCCEE---------------EEEEECTTSSEEEEEE
T ss_pred             EEE-EechhhcccccCCceEeccccc-cccc---CCCCCcE---------------EEeEECCCCCEEEEEE
Confidence            554 88888888864 8888888753 3222   1233322               5899999999885543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=2.8e-19  Score=152.97  Aligned_cols=254  Identities=9%  Similarity=0.077  Sum_probs=174.3

Q ss_pred             EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecCCC
Q 015290           48 AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  127 (409)
Q Consensus        48 a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~  127 (409)
                      ++++.|++|.+||+.+++.                           +.++...             ..+..++|  +|||
T Consensus         6 V~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g-------------~~p~~va~--spdG   43 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV---------------------------TATIPVG-------------SNPMGAVI--SPDG   43 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE---------------------------EEEEECS-------------SSEEEEEE--CTTS
T ss_pred             EEECCCCEEEEEECCCCeE---------------------------EEEEECC-------------CCceEEEE--eCCC
Confidence            4567899999999998763                           4444433             35788999  8999


Q ss_pred             CEEE-EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCccc
Q 015290          128 SMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (409)
Q Consensus       128 ~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (409)
                      ++|+ +++.++.|++||+.+++..........              .......+++..++... ..+..+.+|+..+.  
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--  106 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATNNVIATVPAGSS--------------PQGVAVSPDGKQVYVTN-MASSTLSVIDTTSN--  106 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------------EEEEEECTTSSEEEEEE-TTTTEEEEEETTTT--
T ss_pred             CEEEEEECCCCEEEEEECCCCceeeeeecccc--------------ccccccccccccccccc-cccceeeecccccc--
Confidence            9875 567889999999999887665443221              12222233333322211 22668899998763  


Q ss_pred             ceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290          207 ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (409)
Q Consensus       207 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (409)
                       +....+  .+...+.++.++|+++.++.+  .++.+.+|+.. .......+       . +...+..+.++|++ ..++
T Consensus       107 -~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~-~~~~~~~~~~~~~~-~~~~  173 (301)
T d1l0qa2         107 -TVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------S-VGRSPKGIAVTPDG-TKVY  173 (301)
T ss_dssp             -EEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------E-CCSSEEEEEECTTS-SEEE
T ss_pred             -eeeeec--cccccceEEEeecCCCeeeeeeccccceeeeecc-ccceeeec-------c-cCCCceEEEeeccc-ccee
Confidence             333333  344567889999999988654  78899999998 55555542       2 33457899999999 6666


Q ss_pred             EEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c---CeEEEEEccCCC
Q 015290          285 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDS  359 (409)
Q Consensus       285 s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~---~~v~iwd~~~~~  359 (409)
                      +++. ++.+.+|+....+..    .....              ...+..++|++++..++.+. +   +.|++||+.+ +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t-~  234 (301)
T d1l0qa2         174 VANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-N  234 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-T
T ss_pred             eecccccccccccccceeee----ecccc--------------cCCcceeeccccccccccccccceeeeeeeeecCC-C
Confidence            6554 567778887665431    22222              24567899999999876542 2   7899999986 7


Q ss_pred             cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE-EEcccCCCC
Q 015290          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYRRDN  408 (409)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-~s~s~dg~i  408 (409)
                      +.+..+..+..+                .+++|+|||++| ++++.|++|
T Consensus       235 ~~~~~~~~~~~~----------------~~va~spdg~~l~va~~~~~~i  268 (301)
T d1l0qa2         235 KITARIPVGPDP----------------AGIAVTPDGKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEE
T ss_pred             eEEEEEcCCCCE----------------EEEEEeCCCCEEEEEECCCCeE
Confidence            888777765543                589999999986 577778765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=4e-20  Score=161.51  Aligned_cols=277  Identities=9%  Similarity=0.039  Sum_probs=176.5

Q ss_pred             EEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCCccccccccceeccce
Q 015290           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        38 v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~v  116 (409)
                      ++|+++++||++++.++.|.+||+.+++                           .+.+++ .|.            ..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~---------------------------~~~t~~~~~~------------~~p   42 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT---------------------------VYKSCVMPDK------------FGP   42 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE---------------------------EEEEEECSSC------------CSS
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC---------------------------EEEEEEcCCC------------CCc
Confidence            4789999999999999999999999876                           355554 334            567


Q ss_pred             EEEEEEecCCCCEEE-EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc-----
Q 015290          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-----  190 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  190 (409)
                      .+++|  +|||++++ ++..++.|++||+.+++............       ...........++++..++....     
T Consensus        43 ~~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-------~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          43 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-------EVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT-------EEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             ceEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc-------ccCCceEEEEEecCCCEEEEEecCCcce
Confidence            89999  89999875 45678999999999988766544322110       00011122233444444443321     


Q ss_pred             -----cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290          191 -----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (409)
Q Consensus       191 -----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (409)
                           ..+..+.+|+..+......+...  .....+..+.+++++..++++  +.+.+|++. +......+...      
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~------  182 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAG--PDIYKMDVK-TGKYTVALPLR------  182 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEES--SSEEEECTT-TCCEEEEECST------
T ss_pred             eeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeC--CcceEEEcc-CCCEEEEEecC------
Confidence                 23557888888765544444332  223345566677777665554  447889987 55555553221      


Q ss_pred             ccCceEEEEEeCCCC-------------------------CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc
Q 015290          266 LTEVITSAEFHPIYC-------------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (409)
Q Consensus       266 ~~~~v~~~~~~p~~~-------------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  320 (409)
                        .....+.++|++.                         ..++++..++.+.+||..++....   .            
T Consensus       183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------  245 (346)
T d1jmxb_         183 --NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT---Q------------  245 (346)
T ss_dssp             --TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE---E------------
T ss_pred             --CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE---E------------
Confidence              1112222233321                         333444455566777766654210   1            


Q ss_pred             ccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290          321 SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (409)
Q Consensus       321 ~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  400 (409)
                       .+.+|...+..+.+++++.+++.+..+.|++||..+ ++.+..+......                .+++|||||++|+
T Consensus       246 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~----------------~~va~s~DG~~l~  307 (346)
T d1jmxb_         246 -EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHTY----------------YCVAFDKKGDKLY  307 (346)
T ss_dssp             -EEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECSSSSCEE
T ss_pred             -EeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCCE----------------EEEEEcCCCCEEE
Confidence             122335678889999999999888778999999986 7777777643332                5899999999999


Q ss_pred             EcccCCCC
Q 015290          401 TGSYRRDN  408 (409)
Q Consensus       401 s~s~dg~i  408 (409)
                      +++.||.|
T Consensus       308 v~~~d~~v  315 (346)
T d1jmxb_         308 LGGTFNDL  315 (346)
T ss_dssp             EESBSSEE
T ss_pred             EEeCCCcE
Confidence            99999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=3.5e-18  Score=146.06  Aligned_cols=247  Identities=11%  Similarity=0.112  Sum_probs=169.7

Q ss_pred             CCCcEEEEEECCCCCEEE-EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      ....+..++|+|||++|+ +++.++.|++||+.+++                           .+..+..|.        
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~---------------------------~~~~~~~~~--------   74 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---------------------------VIATVPAGS--------   74 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---------------------------EEEEEECSS--------
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---------------------------eeeeeeccc--------
Confidence            445678999999999875 56688999999998776                           355566665        


Q ss_pred             ceeccceEEEEEEecCCCCEEEE-EeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                           .+..+.|  ++++..+++ +..++.+.+|+..+++.........              .......++++..+...
T Consensus        75 -----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          75 -----SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--------------SPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             -----SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--------------SEEEEEECTTSSEEEEE
T ss_pred             -----ccccccc--ccccccccccccccceeeecccccceeeeeccccc--------------cceEEEeecCCCeeeee
Confidence                 5788999  788876654 5677899999999887665544221              12223333333333222


Q ss_pred             cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (409)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      . ..+..+.+|+..+.   .....+  .+...+..++++|++..++++  .++.+.+|+.. .......+        ..
T Consensus       134 ~-~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~  198 (301)
T d1l0qa2         134 N-NGDKTVSVINTVTK---AVINTV--SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNSVIDTV--------KV  198 (301)
T ss_dssp             E-TTTTEEEEEETTTT---EEEEEE--ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------EC
T ss_pred             e-ccccceeeeecccc---ceeeec--ccCCCceEEEeeccccceeeeccccccccccccc-ceeeeecc--------cc
Confidence            1 12567888988763   333332  234457889999999988876  55777788877 45444432        23


Q ss_pred             cCceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290          267 TEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      ...+..++|++++ ..++.+.   .++.|.+||+.+++..    ..+..              ...+.+++|+|||++|+
T Consensus       199 ~~~~~~~~~~~~g-~~~~v~~~~~~~~~v~v~D~~t~~~~----~~~~~--------------~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         199 EAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPV--------------GPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             SSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEE
T ss_pred             cCCcceeeccccc-cccccccccceeeeeeeeecCCCeEE----EEEcC--------------CCCEEEEEEeCCCCEEE
Confidence            3557889999999 6665443   3578999999987642    22322              24578999999999874


Q ss_pred             -Eeec-CeEEEEEccCCCcceEEEecc
Q 015290          344 -SRDY-MNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       344 -sg~~-~~v~iwd~~~~~~~~~~~~~~  368 (409)
                       +++. +.|++||+.+ ++.+.++...
T Consensus       260 va~~~~~~i~v~D~~t-~~~~~~~~vg  285 (301)
T d1l0qa2         260 VALSFCNTVSVIDTAT-NTITATMAVG  285 (301)
T ss_dssp             EEETTTTEEEEEETTT-TEEEEEEECS
T ss_pred             EEECCCCeEEEEECCC-CeEEEEEeCC
Confidence             5554 9999999986 8888888643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2e-19  Score=156.46  Aligned_cols=239  Identities=11%  Similarity=0.092  Sum_probs=161.0

Q ss_pred             CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEec
Q 015290           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (409)
Q Consensus        45 ~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (409)
                      +|+++++.|++|.|||+++++                           .+..+..+...          ..+.+++|  +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~---------------------------~~~~i~~~~~~----------~~~~~i~~--s   42 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA---------------------------VDKVITIADAG----------PTPMVPMV--A   42 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---------------------------EEEEEECTTCT----------TCCCCEEE--C
T ss_pred             eEEEEEcCCCEEEEEECCCCe---------------------------EEEEEECCCCC----------CCccEEEE--C
Confidence            589999999999999999876                           34555443210          45788999  8


Q ss_pred             CCCCEEE-EEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290          125 PNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (409)
Q Consensus       125 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (409)
                      |||++++ +++.++.|.+||+.+++..........                                             
T Consensus        43 pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---------------------------------------------   77 (337)
T d1pbyb_          43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------------------------------------------   77 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---------------------------------------------
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC---------------------------------------------
Confidence            9999875 567899999999999877654331100                                             


Q ss_pred             cccceeeeeeccccccceeEEEeCCCCCeEEEe-c------------CCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                 ..+...+..++|+|++++++++ .            +..+.+||.. .+.....+       . +...+
T Consensus        78 -----------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~  137 (337)
T d1pbyb_          78 -----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAF-------E-APRQI  137 (337)
T ss_dssp             -----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEE-------E-CCSSC
T ss_pred             -----------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeEEEec-------c-ccCCc
Confidence                       1223345578999999988876 3            4577888888 56555542       2 33457


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc---------------ccccccccc-------------------
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA---------------RILRDAAES-------------------  316 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~-------------------  316 (409)
                      ..++|+|+| +++++++.+  +.+||..+++......               ..+......                   
T Consensus       138 ~~~~~s~dg-~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T d1pbyb_         138 TMLAWARDG-SKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CCEEECTTS-SCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             eEEEEcCCC-CEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeee
Confidence            789999999 888887654  6789988754321000               000000000                   


Q ss_pred             ---------------cCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCC
Q 015290          317 ---------------HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  381 (409)
Q Consensus       317 ---------------~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (409)
                                     ......+..+...+..+.++|++.+++.+ ++.|++||+.+ ++.+..+......          
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~-~~~~~~~~~~~~~----------  282 (337)
T d1pbyb_         215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------  282 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------
T ss_pred             cccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCC-CcEEEEEcCCCCE----------
Confidence                           00000122344556677888888887655 48999999986 7877777644332          


Q ss_pred             CCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          382 DSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       382 ~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                            .+++|+|||++|++++.||+|
T Consensus       283 ------~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         283 ------YSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             ------CEEEECTTSCEEEEESBSSEE
T ss_pred             ------EEEEECCCCCEEEEEeCCCcE
Confidence                  489999999999999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3e-19  Score=160.82  Aligned_cols=209  Identities=11%  Similarity=0.029  Sum_probs=150.0

Q ss_pred             CCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEE
Q 015290           41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  120 (409)
Q Consensus        41 ~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~  120 (409)
                      +++.-++++.+.+|+|.|||..+++                           ++..+..|.             .+..++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~---------------------------v~~~~~~g~-------------~~~~v~   68 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYE---------------------------IKTVLDTGY-------------AVHISR   68 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCC---------------------------EEEEEECSS-------------CEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCc---------------------------EEEEEeCCC-------------CeeEEE
Confidence            4444446888999999999999887                           456666665             689999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEe
Q 015290          121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN  200 (409)
Q Consensus       121 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  200 (409)
                      |  ||||+++++++.|++|++||+.+++......                                              
T Consensus        69 f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~----------------------------------------------  100 (432)
T d1qksa2          69 L--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAE----------------------------------------------  100 (432)
T ss_dssp             E--CTTSCEEEEEETTSEEEEEETTSSSCCEEEE----------------------------------------------
T ss_pred             E--CCCCCEEEEEcCCCCEEEEEeeCCCceEEEE----------------------------------------------
Confidence            9  8999999999999999999998775433211                                              


Q ss_pred             cCCcccceeeeeeccccccceeEEEeCCCCCeE-EEe-cCCeEEEEEccCCCceeeeeecCCC----cCcCccCceEEEE
Q 015290          201 VGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVITSAE  274 (409)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~  274 (409)
                               ++.. .+|.+.+.+.+|+|||++| +++ .++.|++||.. +++.+..+.....    ....+......+.
T Consensus       101 ---------i~~~-~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2         101 ---------IKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             ---------EECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             ---------EecC-CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEE
Confidence                     1111 3456666777889999987 456 89999999998 6776665432211    1122455677899


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEE
Q 015290          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL  352 (409)
Q Consensus       275 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~i  352 (409)
                      ++|++..++++...++.|.+||..+.+..    .....            .+...+..++|+|||+++++++ + +.+.+
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~----~~~~i------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v  233 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNL----KTTEI------------SAERFLHDGGLDGSHRYFITAANARNKLVV  233 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEE----EEEEE------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcc----eEEEE------------cccCccccceECCCCCEEEEeccccceEEE
Confidence            99999445667778899999998775421    22211            0134678899999999988875 4 89999


Q ss_pred             EEccCCCcceEEE
Q 015290          353 WDIRMDSTPVATF  365 (409)
Q Consensus       353 wd~~~~~~~~~~~  365 (409)
                      +|... ++.+..+
T Consensus       234 ~d~~~-~~~~~~~  245 (432)
T d1qksa2         234 IDTKE-GKLVAIE  245 (432)
T ss_dssp             EETTT-TEEEEEE
T ss_pred             eeccc-ceEEEEe
Confidence            99875 5554444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=9.5e-19  Score=157.63  Aligned_cols=273  Identities=9%  Similarity=0.023  Sum_probs=167.6

Q ss_pred             ECCCC--CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceE
Q 015290           40 FDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (409)
Q Consensus        40 ~~~~~--~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (409)
                      ++.|.  -++++.+.||+|+|||+.+++                           .+.++..|.             .+.
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~---------------------------~~~~l~~g~-------------~~~   65 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK---------------------------IVKVIDTGY-------------AVH   65 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS---------------------------EEEEEECCS-------------SEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc---------------------------EEEEEeCCC-------------Cee
Confidence            44443  355778899999999999887                           466777765             689


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeE
Q 015290          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (409)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  197 (409)
                      .++|  ||||++|++++.|++|++||+.+++..........        ....+..++..+++++.+++.+. ..++.++
T Consensus        66 ~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~--------~~~~~~~~s~~~spDG~~l~v~~-~~~~~v~  134 (426)
T d1hzua2          66 ISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG--------IEARSVESSKFKGYEDRYTIAGA-YWPPQFA  134 (426)
T ss_dssp             EEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC--------SEEEEEEECCSTTCTTTEEEEEE-EESSEEE
T ss_pred             EEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC--------CCCcceEEeeeecCCCCEEEEee-cCCCeEE
Confidence            9999  89999999999999999999998875543322111        11234455666777777665433 2377999


Q ss_pred             EEecCCcccceeeeee-------ccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          198 IANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       198 ~~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      +||.++..........       ...+......+.+++++..++..  ..+.+.+++.. ........      ..++..
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~-~~~~~~~~------~~~~~~  207 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLTVT------SIGAAP  207 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS-SSSSCEEE------EEECCS
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec-cccceeeE------EeccCC
Confidence            9999874322221100       01123334556666666666654  45556566555 22222111      234667


Q ss_pred             ceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC--EEEE-
Q 015290          269 VITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLS-  344 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~s-  344 (409)
                      .+..+.|+|++ ++++++ ..+..+.+++..+++..    ..... ...+          .......+...+.  ..+. 
T Consensus       208 ~~~~~~~~~~g-~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~  271 (426)
T d1hzua2         208 FLADGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDV-GKTP----------HPGRGANFVHPKYGPVWSTS  271 (426)
T ss_dssp             SEEEEEECTTS-CEEEEEETTCSEEEEEETTTTEEE----EEEEC-SSCC----------CCSCCEEEEETTTEEEEEEE
T ss_pred             ccEeeeECCCC-cEEEeeeecccceeeeecccccEE----EEecc-CCcc----------cccceeeeecCCCCceEEec
Confidence            78999999999 655555 46678999999887642    22221 0000          1112222222221  1111 


Q ss_pred             ee-cCeEEEEEccC------CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290          345 RD-YMNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (409)
Q Consensus       345 g~-~~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  401 (409)
                      .. ++.+.+|+...      ..+....+.+|...+               ..++|+|||++|++
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v---------------~~v~~sPdg~~l~v  320 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYV  320 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCC---------------CCEECCTTCSEEEE
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCce---------------eEEEcCCCCceEEE
Confidence            11 35666665432      136778888888765               58999999999994

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.9e-17  Score=140.96  Aligned_cols=275  Identities=12%  Similarity=0.102  Sum_probs=167.3

Q ss_pred             cceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEe-cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCc
Q 015290           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (409)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (409)
                      ..|.+... +.......++|.+.|..|+|+|||++|++++ .|+.|++|++......                       
T Consensus        17 ~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-----------------------   72 (333)
T d1ri6a_          17 HVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------------------   72 (333)
T ss_dssp             EEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------------------
T ss_pred             EEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-----------------------
Confidence            34766432 2112233456889999999999999996555 5899999999865431                       


Q ss_pred             eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (409)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (409)
                      .+..... .+.            ..+..++|  +|||++|++++. ++.|.+|+...........               
T Consensus        73 ~~~~~~~-~~~------------~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~---------------  122 (333)
T d1ri6a_          73 LTFAAES-ALP------------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD---------------  122 (333)
T ss_dssp             EEEEEEE-ECS------------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEE---------------
T ss_pred             EEEeeec-ccC------------CCceEEEE--cCCCCEEeecccCCCceeeeccccccceeccc---------------
Confidence            0111111 112            46778999  899999998875 6789999887654332211               


Q ss_pred             ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEcc
Q 015290          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE  247 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~  247 (409)
                                                                  ...+...+.++.++|++++++.+  .+..|.+|+..
T Consensus       123 --------------------------------------------~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_         123 --------------------------------------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             --------------------------------------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             --------------------------------------------ccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence                                                        02345567788999999988876  67789999987


Q ss_pred             CCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEE-EeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      ......... .... ..........++|++++ .+++. ....+...+|+................   .+.    ....
T Consensus       159 ~~~~~~~~~-~~~~-~~~~g~~p~~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~----~~~~  228 (333)
T d1ri6a_         159 DDGHLVAQD-PAEV-TTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIECVQTLDM---MPE----NFSD  228 (333)
T ss_dssp             TTSCEEEEE-EEEE-ECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC---SCT----TCCS
T ss_pred             cCCcceeee-ceee-eeecCCCccEEEEeccc-eeEEeeccccCceEEEeecccccceeeeeeeee---eec----CCCc
Confidence            433322211 0000 12233556889999998 65554 456677888887553321110011100   000    0011


Q ss_pred             ccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290          327 IASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~  404 (409)
                      ......+++++++++++... . +.+.+|++...+..... ..+.....         .   +.+++|+|||++|++++.
T Consensus       229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~---p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK-EGFQPTET---------Q---PRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE-EEEEECSS---------S---CCCEEECTTSSEEEEECT
T ss_pred             cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE-EEEeCCCC---------C---eeEEEEeCCCCEEEEEEC
Confidence            23566789999999887664 3 89999998753333322 22211100         0   148999999998776654


Q ss_pred             -CCC
Q 015290          405 -RRD  407 (409)
Q Consensus       405 -dg~  407 (409)
                       +++
T Consensus       296 ~~~~  299 (333)
T d1ri6a_         296 KSHH  299 (333)
T ss_dssp             TTCE
T ss_pred             CCCe
Confidence             454

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=7.6e-16  Score=135.72  Aligned_cols=296  Identities=8%  Similarity=-0.036  Sum_probs=174.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEe-----cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      .+..++.+++++|||+.+++..     .++.|.+||..+++                           .+..+..+.   
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~---------------------------~~~~~~~~~---   67 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS---------------------------ILGHVNGGF---   67 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC---------------------------EEEEEeCCC---
Confidence            3678899999999999987652     34579999988876                           345555554   


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (409)
                               .  ..+.|  +|||++|++++          .++.|.+||..+++................      ....
T Consensus        68 ---------~--~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~------~~~~  128 (373)
T d2madh_          68 ---------L--PNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG------PYSW  128 (373)
T ss_pred             ---------C--ccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec------cCCC
Confidence                     2  26889  89999998875          457899999999887665443222110000      0000


Q ss_pred             eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCce
Q 015290          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQC  252 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~  252 (409)
                      ...+++++..++......++.+.+|+.....   .     ..+.....++.++|+++.++ +. .|+.+.+|+.. ....
T Consensus       129 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~-~~~~  199 (373)
T d2madh_         129 MNANTPNNADLLFFQFAAGPAVGLVVQGGSS---D-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA-GGAA  199 (373)
T ss_pred             cEEEEeCCCcEEEEEEcCCCceEEeeccCCe---E-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC-Ccee
Confidence            1112222333333333335567777765421   1     22334467889999987665 55 89999999998 4544


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  332 (409)
                      ........ ...+.......+.+++++  .++..+.++.+.+|+...+.....  ..+..+   ................
T Consensus       200 ~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~  271 (373)
T d2madh_         200 GAGLVGAM-LTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK--APIDAL---SGGRKADTWRPGGWQQ  271 (373)
T ss_pred             eEEEeeec-cccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE--Eeeccc---cCcEEeeeeccCccee
Confidence            43321110 011222334455666654  455667889999999887643211  111110   0000000000122344


Q ss_pred             eEeccCCCEEE----------Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCe--E
Q 015290          333 IKFANDGQHLL----------SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH--F  399 (409)
Q Consensus       333 ~~~s~~g~~l~----------sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--l  399 (409)
                      +++++++..++          +.. ++.+.+||..+ ++.+..+......                ..++|+|||+.  +
T Consensus       272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~  334 (373)
T d2madh_         272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLY  334 (373)
T ss_pred             eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCCe----------------eEEEECCCCCEEEE
Confidence            56666665443          333 37899999986 7777777644433                58999999984  4


Q ss_pred             EEcccCCCC
Q 015290          400 ATGSYRRDN  408 (409)
Q Consensus       400 ~s~s~dg~i  408 (409)
                      ++++.|++|
T Consensus       335 vt~~~d~~v  343 (373)
T d2madh_         335 ALSAGTEVL  343 (373)
T ss_pred             EEeCCCCeE
Confidence            678888875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=3e-16  Score=136.00  Aligned_cols=257  Identities=10%  Similarity=0.068  Sum_probs=158.8

Q ss_pred             CCCcEEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      +...+.+++|+|||+++ ++++.++.|.+||+.+++.                           +..+..+...      
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~---------------------------~~~~~~~~~~------   78 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---------------------------LGRIDLSTPE------   78 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECCBTT------
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEEEecCCCc------
Confidence            34567899999999987 4667899999999998763                           3344433310      


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEe------------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (409)
                       .....+..++|  +|++++++++.            .+..+.+||..+++.........              ......
T Consensus        79 -~~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------------~~~~~~  141 (337)
T d1pbyb_          79 -ERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--------------QITMLA  141 (337)
T ss_dssp             -EEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--------------SCCCEE
T ss_pred             -ccccceeeEEE--cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC--------------CceEEE
Confidence             00134567899  79999998875            46778889998887766544221              111222


Q ss_pred             CCCCCceeecccccccceeEEEecCCcccceeeeeec----------------cc-c--ccceeEEEeCCCCCeEEEe-c
Q 015290          178 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP----------------HA-H--DFNINSISNNSDCETFVSA-D  237 (409)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------~~-~--~~~v~~l~~~~~~~~l~~~-~  237 (409)
                      .++++.+++.+    ++.+.+||..+...........                .. +  ...........+......+ .
T Consensus       142 ~s~dg~~l~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T d1pbyb_         142 WARDGSKLYGL----GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             ECTTSSCEEEE----SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EcCCCCEEEEE----cCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence            33444444443    2346677776532221111000                00 0  0000011111122222223 4


Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  317 (409)
                      ++.+.+|+.. .+......      +..+...+..+.++|++ .+++.+  ++.|++||+.+++..    .....     
T Consensus       218 ~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~~~----~~~~~-----  278 (337)
T d1pbyb_         218 RTGLLTMDLE-TGEMAMRE------VRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASI----KRVPL-----  278 (337)
T ss_dssp             EEEEEEEETT-TCCEEEEE------EEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEE----EEEEC-----
T ss_pred             CccEEEEEcC-CCcEEEEE------ecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCcEE----EEEcC-----
Confidence            5568888887 44433321      44566778899999998 777655  588999999987642    22222     


Q ss_pred             CCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccC
Q 015290          318 GSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       318 ~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                               ...+.+++|+|||++|++++. +.|++||..+ .+.+..++....
T Consensus       279 ---------~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t-~~~v~~i~~~g~  322 (337)
T d1pbyb_         279 ---------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAET-LEKKGQVDLPGN  322 (337)
T ss_dssp             ---------SSCCCEEEECTTSCEEEEESBSSEEEEEETTT-CCEEEEEECGGG
T ss_pred             ---------CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcEEEEEECCCC
Confidence                     346889999999999998874 9999999987 888888875444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=7.9e-17  Score=140.22  Aligned_cols=257  Identities=11%  Similarity=0.015  Sum_probs=153.9

Q ss_pred             CCCcEEEEEECCCCCEEE-EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290           31 DVDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (409)
Q Consensus        31 h~~~v~~v~~~~~~~~la-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (409)
                      |...+.+++|+|||++++ ++..++.|.+||+.+++.                           +..+.....      .
T Consensus        38 ~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~---------------------------~~~~~~~~~------~   84 (346)
T d1jmxb_          38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN---------------------------TFHANLSSV------P   84 (346)
T ss_dssp             SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE---------------------------EEEEESCCS------T
T ss_pred             CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee---------------------------eeeeccccc------c
Confidence            456678999999999874 556789999999998763                           222221110      0


Q ss_pred             ceeccceEEEEEEecCCCCEEEEEe------------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc
Q 015290          110 LEIEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (409)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (409)
                      ......+..++|  +|||+++++++            .++.+.+|+..+++..........+          .... ...
T Consensus        85 ~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~  151 (346)
T d1jmxb_          85 GEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP----------RQVY-LMR  151 (346)
T ss_dssp             TEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC----------SSCC-CEE
T ss_pred             cccCCceEEEEE--ecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc----------CceE-EEE
Confidence            011134667889  89999988765            4677888888776544322211110          0000 111


Q ss_pred             CCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-------------------------
Q 015290          178 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-------------------------  232 (409)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------------------------  232 (409)
                      ..++..++..     +..+.+|+..+.   +.+..+ ..+ .....+.++|++..                         
T Consensus       152 ~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (346)
T d1jmxb_         152 AADDGSLYVA-----GPDIYKMDVKTG---KYTVAL-PLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  221 (346)
T ss_dssp             ECTTSCEEEE-----SSSEEEECTTTC---CEEEEE-CST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             ecCCCEEEEe-----CCcceEEEccCC---CEEEEE-ecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCce
Confidence            1112222211     234666766542   222222 111 11223334444333                         


Q ss_pred             -EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccc
Q 015290          233 -FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  310 (409)
Q Consensus       233 -l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  310 (409)
                       ++++ .+..+.+||+. .+......      ...+...+..+.+++++ .++++.. ++.|.+||..+++..    ...
T Consensus       222 ~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~----~~~  288 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLK-TGKTHTQE------FADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQRKLI----KAA  288 (346)
T ss_dssp             --CCCEEEEEEEEEETT-TCCEEEEE------EEECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTTTEEE----EEE
T ss_pred             eEeeccCCceEEEEECC-CCceEEEE------eecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCCCcEE----EEE
Confidence             2333 45556777776 33332221      35567788899999998 6666655 457999999887642    222


Q ss_pred             cccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCc
Q 015290          311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      ..              ...+.+++|+|||++|++++. +.|++||.++ ++.+..++.+.+.
T Consensus       289 ~~--------------~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t-~~~i~~i~~p~g~  335 (346)
T d1jmxb_         289 NL--------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT-LEKVKNIKLPGGD  335 (346)
T ss_dssp             EC--------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTT-TEEEEEEECSSSC
T ss_pred             cC--------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc-CCEEEEEECCCCC
Confidence            22              246889999999999999874 9999999987 8999988866654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=8.2e-16  Score=134.46  Aligned_cols=288  Identities=10%  Similarity=0.014  Sum_probs=172.1

Q ss_pred             EEEEECCCCCEEEEEe-----cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290           36 SAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (409)
                      .-.+.+|||+.+++..     .++.|.+||..+++                           .+..+..+.         
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~---------------------------~~~~~~~g~---------   48 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------------VIGMIDGGF---------   48 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------------EEEEEEECS---------
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc---------------------------EEEEEECCC---------
Confidence            3346689999987653     45679999998876                           344454443         


Q ss_pred             eeccceEEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC
Q 015290          111 EIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (409)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (409)
                           +..++|  +|||++|++++          .|+.|++||..+++.............      ..........+++
T Consensus        49 -----~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~------~~~~~~~~~~~s~  115 (355)
T d2bbkh_          49 -----LPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF------LVGTYPWMTSLTP  115 (355)
T ss_dssp             -----SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC------CBSCCGGGEEECT
T ss_pred             -----CCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee------ecCCCCceEEEec
Confidence                 336899  89999887653          478999999999887765543221100      0011112233455


Q ss_pred             CCceeecccccccceeEEEecCCcccceeeeeec---cccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeee
Q 015290          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYP---HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI  255 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~  255 (409)
                      ++..++......+..+.+|+..+......+....   .........+.++++++.++..  .++.+.+++.. ...    
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~-~~~----  190 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE-VFH----  190 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC-CCS----
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc-ccc----
Confidence            6666666555567789999987643322221100   0001223345666776666554  45555555544 111    


Q ss_pred             eecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (409)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  335 (409)
                              ..+...+....+.+++ ..++.++.++.+.+|++..+....  +.....+...   .............+++
T Consensus       191 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~---~~~~~~~p~~~~~~~~  256 (355)
T d2bbkh_         191 --------PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEA---ERADGWRPGGWQQVAY  256 (355)
T ss_dssp             --------CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEE--CCCEESSCHH---HHHTTEEECSSSCEEE
T ss_pred             --------ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEE--EeccCCcccc---eEeeeeeccceEEEEE
Confidence                    1233344556778877 888889999999999998865311  0111110000   0000001123456899


Q ss_pred             ccCCCEEEEeec-----------CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC--eEEEc
Q 015290          336 ANDGQHLLSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFATG  402 (409)
Q Consensus       336 s~~g~~l~sg~~-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~s~  402 (409)
                      ++++..++....           ..|.+||..+ ++.+..+..+...                .+++|+|||+  +++++
T Consensus       257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALS  319 (355)
T ss_dssp             ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEE
T ss_pred             eCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCCCCeEEEEEE
Confidence            999988775421           4799999986 7777777654443                4899999998  45667


Q ss_pred             ccCCCC
Q 015290          403 SYRRDN  408 (409)
Q Consensus       403 s~dg~i  408 (409)
                      +.|++|
T Consensus       320 ~~d~~i  325 (355)
T d2bbkh_         320 TGDKTL  325 (355)
T ss_dssp             TTTTEE
T ss_pred             CCCCEE
Confidence            777764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.2e-15  Score=131.70  Aligned_cols=266  Identities=11%  Similarity=0.065  Sum_probs=151.3

Q ss_pred             EEEEEECCCCCEEEEEe----------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290           35 VSAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (409)
                      +..++|+|||++|++.+          .|+.|++||..+++.                           +..+..+... 
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~---------------------------~~~~~~~~~~-  100 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP---------------------------TADIELPDAP-  100 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE---------------------------EEEEEETTCC-
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE---------------------------EEEEecCCcc-
Confidence            34789999999887653          478999999998763                           2222222200 


Q ss_pred             cccccceeccceEEEEEEecCCCCEEEEEe--CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290          105 DYLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (409)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (409)
                          ..........+.|  +++++.++.+.  .+..+.+|+..+++.............    +  ..+........+++
T Consensus       101 ----~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~dg  168 (355)
T d2bbkh_         101 ----RFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI----F--PTAPDTFFMHCRDG  168 (355)
T ss_dssp             ----CCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE----E--EEETTEEEEEETTS
T ss_pred             ----eeecCCCCceEEE--ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE----e--ecCCcceEEEcCCC
Confidence                0011123456788  79999888774  567899999998877655432211100    0  00000000011111


Q ss_pred             ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceee--eeecC
Q 015290          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN--IVDMK  259 (409)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~--~~~~~  259 (409)
                      ..+.... ..++.+.+++....         ...+...+....+.+++..++.+ .++.+++|++. .+....  .....
T Consensus       169 ~~~~v~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~  237 (355)
T d2bbkh_         169 SLAKVAF-GTEGTPEITHTEVF---------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS-SGDAKFLPAVEAL  237 (355)
T ss_dssp             CEEEEEC-CSSSCCEEEECCCC---------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT-TSSCEECCCEESS
T ss_pred             CEEEEEe-cCCCeEEEEecccc---------cceecceeeeccccCCCCeEEEecCCCeEEEEecC-CCcEEEEeccCCc
Confidence            1111100 01222333332211         12334445566777788888887 99999999998 333211  11000


Q ss_pred             CC---cCcCccCceEEEEEeCCCCCEEEEEeCC----------CeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          260 PS---NMDDLTEVITSAEFHPIYCNLLAYSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       260 ~~---~~~~~~~~v~~~~~~p~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                      ..   ...........+++++++ ..++....+          +.|.+||..+++.    +..+..              
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~----~~~~~~--------------  298 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEM--------------  298 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEE--------------
T ss_pred             ccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCCCcE----EEEecC--------------
Confidence            00   000011233468899998 766654432          4699999998764    233332              


Q ss_pred             ccceeeeEeccCCCE--EEEee-cCeEEEEEccCCCcceEEEecccCc
Q 015290          327 IASISDIKFANDGQH--LLSRD-YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~--l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      ...+.+++|+|||+.  ++++. ++.|++||+++ ++.+..+.++...
T Consensus       299 ~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t-g~~~~~i~~~G~~  345 (355)
T d2bbkh_         299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG  345 (355)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred             CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC-CCEEEEEeCcCCC
Confidence            346889999999973  44554 49999999987 8999999865443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=3.4e-13  Score=118.38  Aligned_cols=263  Identities=9%  Similarity=-0.023  Sum_probs=151.7

Q ss_pred             EEEEECCCCCEEEEEe----------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290           36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (409)
                      ..++|+|||++|++++          .++.|.+||..+++.                           +..+..+...  
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~~~~~~~~--  119 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAP--  119 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE---------------------------EEEEecCCcc--
Confidence            3799999999999875          457899999998763                           3333333310  


Q ss_pred             ccccceeccceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290          106 YLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (409)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                         ..........+.|  +++++.++..  ..++.+.+|+....+........                 .....++++.
T Consensus       120 ---~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~s~~g~  177 (373)
T d2madh_         120 ---RFDVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP-----------------TCYHIHPGAP  177 (373)
T ss_pred             ---eeEeccCCCcEEE--EeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc-----------------eeEEEecCCC
Confidence               0000012345777  6788776655  44568888988776554332210                 0111112222


Q ss_pred             eeecccccccceeEEEecCCcccceeeeeec--cccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCC
Q 015290          184 HGYHLEWTENMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS  261 (409)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~  261 (409)
                      ..+ .....++.+.+|+..............  .+.......+.+.+++..++.+.++.+.+|+.. .............
T Consensus       178 ~~~-v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~  255 (373)
T d2madh_         178 STF-YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS-AAGATNKAPIDAL  255 (373)
T ss_pred             cEE-EEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcC-CCeEEEEEeeccc
Confidence            111 112237889999987644333322111  122223345566776766655588999999987 3332222111100


Q ss_pred             --c---CcCccCceEEEEEeCCCCCE----------EEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290          262 --N---MDDLTEVITSAEFHPIYCNL----------LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (409)
Q Consensus       262 --~---~~~~~~~v~~~~~~p~~~~~----------l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
                        .   ..........++++|++ ..          +++...++.+.+||..+++..    ..+..              
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~----~~~~~--------------  316 (373)
T d2madh_         256 SGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----SQISL--------------  316 (373)
T ss_pred             cCcEEeeeeccCcceeeEEecCC-CeEEEecCCCceEEeecCCCeEEEEECCCCcEE----EEecC--------------
Confidence              0   00011223445666665 43          334556678899999887642    22222              


Q ss_pred             ccceeeeEeccCCCE--EEEee-cCeEEEEEccCCCcceEEEecccCc
Q 015290          327 IASISDIKFANDGQH--LLSRD-YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       327 ~~~i~~~~~s~~g~~--l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      ...+..++|+|||+.  +++++ ++.|++||+.+ ++.+..+..+...
T Consensus       317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t-g~~~~~~~~~g~~  363 (373)
T d2madh_         317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQSTVELGSG  363 (373)
T ss_pred             CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEECCCCCC
Confidence            356889999999984  34555 49999999987 8999999876554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=8.9e-14  Score=119.99  Aligned_cols=234  Identities=9%  Similarity=0.073  Sum_probs=144.4

Q ss_pred             EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecC
Q 015290           46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  125 (409)
Q Consensus        46 ~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~  125 (409)
                      .+++++.|++|++|+++....                        .+.+.. ..|.            +.|..|+|  +|
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~------------------------l~~~~~-~~~~------------~~v~~la~--sp   46 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA------------------------LTLTQV-VDVP------------GQVQPMVV--SP   46 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC------------------------EEEEEE-EECS------------SCCCCEEE--CT
T ss_pred             EEEECCCCCcEEEEEEcCCCC------------------------eEEEEE-EcCC------------CCEeEEEE--eC
Confidence            346777999999999975432                        112222 2344            78999999  89


Q ss_pred             CCCEEEEEe-CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290          126 NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (409)
Q Consensus       126 ~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (409)
                      ||++|++++ .|+.|++|++..........                                                  
T Consensus        47 DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~--------------------------------------------------   76 (333)
T d1ri6a_          47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFA--------------------------------------------------   76 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------------------------------------------
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEe--------------------------------------------------
Confidence            999996654 58999999997653321110                                                  


Q ss_pred             ccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCE
Q 015290          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (409)
Q Consensus       205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  282 (409)
                            .  ...+...+..++|+|||++|+++  .++.+.+|+.. .........     ...+...+.++.++|++ ++
T Consensus        77 ------~--~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~-~~~~~~~~~-----~~~~~~~~~~v~~s~d~-~~  141 (333)
T d1ri6a_          77 ------A--ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD-----VVEGLDGCHSANISPDN-RT  141 (333)
T ss_dssp             ------E--EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE-----EECCCTTBCCCEECTTS-SE
T ss_pred             ------e--ecccCCCceEEEEcCCCCEEeecccCCCceeeeccc-cccceeccc-----ccCCCccceEEEeeecc-ee
Confidence                  0  01233456789999999999887  58899999987 333332211     33455677899999999 77


Q ss_pred             EEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCC
Q 015290          283 LAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS  359 (409)
Q Consensus       283 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~  359 (409)
                      ++.++ .+..+.+|+................           .........++|++++.+++... . +...+|+.....
T Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~  210 (333)
T d1ri6a_         142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVT-----------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH  210 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-----------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred             eeccccccceeeEEEeccCCcceeeeceeee-----------eecCCCccEEEEeccceeEEeeccccCceEEEeecccc
Confidence            66665 5567999998764321100000000           01123467899999999887664 3 788888876433


Q ss_pred             cceEE---EecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          360 TPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       360 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      ..+..   +........         .......+++++|+++++...
T Consensus       211 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~d~~~~~~~~  248 (333)
T d1ri6a_         211 GNIECVQTLDMMPENFS---------DTRWAADIHITPDGRHLYACD  248 (333)
T ss_dssp             SCCEEEEEEECSCTTCC---------SCCCEEEEEECTTSSEEEEEE
T ss_pred             cceeeeeeeeeeecCCC---------ccccceeEEEecccCceeeec
Confidence            22222   111111000         011124688999998766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=1.9e-12  Score=113.41  Aligned_cols=261  Identities=7%  Similarity=-0.026  Sum_probs=147.7

Q ss_pred             EEEECCCCCEEEEEe----------cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (409)
Q Consensus        37 ~v~~~~~~~~la~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (409)
                      .++|+|||++|++.+          .|+.|.+||..+.+.                           +..+..+...   
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~---------------------------~~~i~~p~~~---  118 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAP---  118 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------EEEEEETTSC---
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE---------------------------eeeecCCccc---
Confidence            589999999998764          467899999988763                           2333222210   


Q ss_pred             cccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (409)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (409)
                        ..........++|  +|||++|+++. .++.+.+||+.+++............     ... .+.....         
T Consensus       119 --~~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----~~~-~~~~~~v---------  179 (368)
T d1mdah_         119 --RFSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH-----IHP-GAAATHY---------  179 (368)
T ss_dssp             --SCCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC-----CEE-EETTEEE---------
T ss_pred             --eecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce-----Ecc-CCCceEE---------
Confidence              0000023346889  89999998875 57999999999998776654322110     000 0000001         


Q ss_pred             ecccccccceeEEEecCCcccceeee--eeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCc-
Q 015290          186 YHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-  262 (409)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~-  262 (409)
                         ....|+.+.+++...........  .....+...+..+.+.+++..+.+ .++.+.+++.. .............. 
T Consensus       180 ---~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~-~~~~~~~~~~~~~~~  254 (368)
T d1mdah_         180 ---LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIP-AAGATMKAAIDGNES  254 (368)
T ss_dssp             ---CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECC-SSCCEEECCCCSSCT
T ss_pred             ---EEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeec-CCceEEEeecccccc
Confidence               11225556666554322111110  011334445556777777654433 44556677765 22222111000000 


Q ss_pred             ----CcCccCceEEEEEeCCCCCEEEEEeC---------CCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290          263 ----MDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (409)
Q Consensus       263 ----~~~~~~~v~~~~~~p~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (409)
                          ..........++++|++ ..++....         ...|.+||..+++.    ...+..              ...
T Consensus       255 ~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~----~~~~~~--------------~~~  315 (368)
T d1mdah_         255 GRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQT----SGPISN--------------GHD  315 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCE----EECCEE--------------EEE
T ss_pred             eeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcE----eEEecC--------------CCc
Confidence                00011223457889998 55544322         13588999988764    233332              346


Q ss_pred             eeeeEeccCCCE-E-EEee-cCeEEEEEccCCCcceEEEecccCc
Q 015290          330 ISDIKFANDGQH-L-LSRD-YMNLKLWDIRMDSTPVATFKIHEHL  371 (409)
Q Consensus       330 i~~~~~s~~g~~-l-~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~  371 (409)
                      +..++|+|||+. | +++. ++.|++||..+ ++.+..+.....+
T Consensus       316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~P  359 (368)
T d1mdah_         316 SDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCCC
Confidence            889999999973 3 3444 49999999987 8888888866554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=3.1e-12  Score=112.05  Aligned_cols=62  Identities=6%  Similarity=-0.035  Sum_probs=42.8

Q ss_pred             eeeeEeccCCCEEEEeec----------CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-
Q 015290          330 ISDIKFANDGQHLLSRDY----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-  398 (409)
Q Consensus       330 i~~~~~s~~g~~l~sg~~----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-  398 (409)
                      ...++++|++..++....          ..|.+||..+ ++.+..+......                .+++|+|||+. 
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~  328 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASD  328 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCE
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCce----------------eEEEECCCCCEE
Confidence            456888999887665421          3599999986 7777666544332                48999999973 


Q ss_pred             -EEEcccCCCC
Q 015290          399 -FATGSYRRDN  408 (409)
Q Consensus       399 -l~s~s~dg~i  408 (409)
                       ++++..|++|
T Consensus       329 ly~s~~~~~~v  339 (368)
T d1mdah_         329 NYANSAGTEVL  339 (368)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEeCCCCeE
Confidence             4566667654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=9.9e-12  Score=108.70  Aligned_cols=253  Identities=10%  Similarity=0.001  Sum_probs=136.6

Q ss_pred             ceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCccccccccccccc-CceeccCCCCCceeecccc--
Q 015290          115 KINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGYHLEW--  190 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--  190 (409)
                      ......+  +|||++|++. ..++.|.++|+.+++...+........+..+.+.+... .++.+.......+...+..  
T Consensus        73 ~~s~t~g--tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          73 HISMTDG--RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EEEEETT--EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             Ccceecc--cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            3444555  5899988665 57789999999999887766554433333333332211 1121111111000000100  


Q ss_pred             --cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC-C---------------------------
Q 015290          191 --TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L---------------------------  239 (409)
Q Consensus       191 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~---------------------------  239 (409)
                        .....+..+|.++......+.     -......++++|+|++++++ .+ .                           
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~-----v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVI-----VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEE-----ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             cccccceEEeecCccceeeEEEe-----cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence              011234556665533222221     12346778999999988765 32 1                           


Q ss_pred             -------------eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCE-EEEEeCCCeEEEEeCCCcccccc
Q 015290          240 -------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFVRLVDMRQSALCDH  305 (409)
Q Consensus       240 -------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~  305 (409)
                                   .+.+++.. ....+..       ++.. .....+.++||| ++ ++++..+++|.+||+.+-.    
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~-~~~v~~~-------IPvg-ksPhGv~vSPDG-kyl~~~~~~~~tvsv~d~~k~~----  291 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRG-ESEFTRY-------IPVP-KNPHGLNTSPDG-KYFIANGKLSPTVSVIAIDKLD----  291 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSS-SCSSEEE-------ECCB-SSCCCEEECTTS-CEEEEECTTSSBEEEEEGGGHH----
T ss_pred             ecCCCEEEeCCCCcEEEEccc-CCceEEE-------EeCC-CCccCceECCCC-CEEEEeCCcCCcEEEEEeehhh----
Confidence                         22222222 1222222       1222 235679999999 65 5667889999999987632    


Q ss_pred             ccccccccccccCCccccccc---ccceeeeEeccCCCEEEEee-cCeEEEEEccCC---------CcceEEE-----ec
Q 015290          306 SARILRDAAESHGSKSFFTEI---IASISDIKFANDGQHLLSRD-YMNLKLWDIRMD---------STPVATF-----KI  367 (409)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~---------~~~~~~~-----~~  367 (409)
                        ..++.+   ......+.++   .-.....+|+++|..+.+.. |.+|..|++...         ...+..+     .+
T Consensus       292 --~~~~~~---~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G  366 (441)
T d1qnia2         292 --DLFEDK---IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG  366 (441)
T ss_dssp             --HHTTTS---SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred             --hHhhcc---CCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence              111110   0000111111   11234458999997777765 599999997520         1233444     34


Q ss_pred             ccCcccccccccCCCCccceeeEEEcCCCCeEEEc---ccCCCC
Q 015290          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG---SYRRDN  408 (409)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~---s~dg~i  408 (409)
                      |...+               .+.+++|||+||+++   |.|+.+
T Consensus       367 H~~~~---------------~~~t~~pdGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         367 HNHAS---------------LTESRDADGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             EEEET---------------TTTSTTCCCCEEEEEESCCGGGSC
T ss_pred             CCccc---------------cccccCCCCcEEEecCccccccCc
Confidence            55443               478999999999999   777654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=1.7e-10  Score=104.23  Aligned_cols=81  Identities=9%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             cCCCcEEEEEECCCCCEEEEEec---------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCC
Q 015290           30 QDVDIVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (409)
Q Consensus        30 ~h~~~v~~v~~~~~~~~la~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (409)
                      +|...|.++.|||||++||.++.         ++.+.|||+.+++.                            ..+..|
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----------------------------~~l~~~  110 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------------------------ITEERI  110 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------------------------CCSSCC
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----------------------------cccccC
Confidence            36678999999999999998853         56788999998763                            345666


Q ss_pred             CccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeee
Q 015290          101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK  153 (409)
Q Consensus       101 ~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  153 (409)
                      .            +.+..+.|  ||||+.++... ++.+.+|+..++......
T Consensus       111 ~------------~~~~~~~~--SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1         111 P------------NNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             C------------TTEEEEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             C------------cccccccc--ccCcceeeEee-cccceEEECCCCceeeee
Confidence            6            78999999  89999999865 678999999888665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.33  E-value=1.4e-08  Score=87.96  Aligned_cols=277  Identities=8%  Similarity=-0.021  Sum_probs=135.3

Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-eeeeeeccCCCcccccccccccccCc-eeccCCCCCceeeccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNF-MNEHNPPSFAHGYHLEWT  191 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  191 (409)
                      ..+..|+|  +++++.|+++.. +.+..|.+... ..............+.+.+....... +.....+...........
T Consensus        40 ~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          40 EPISWMTF--DHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCEEEE--cCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            45677999  799999988765 45777776532 22222211112222222222222211 111111111111100001


Q ss_pred             ccceeEEEecCCc-ccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290          192 ENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (409)
Q Consensus       192 ~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (409)
                      .++...+..+... ................+.++.|+|+|++++++  ....|.+|+....+.....-...   ......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~---~~~~g~  193 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD---APDPGD  193 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE---CSSTTC
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee---ecCCCC
Confidence            1223333333211 11111111112233457899999999988887  56688888876444332211000   222345


Q ss_pred             ceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCCcccccc-ccccccc-cccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          269 VITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDH-SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      ....++|+|++ +++ ++...+++|.+|++..++.... ....... ....+........+......+.++|||++|+++
T Consensus       194 gPr~i~f~pdg-~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         194 HPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCC-ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            68999999999 655 5556789999999876543110 0000000 000000111111223456678999999999876


Q ss_pred             e--c-----CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcc-cCCC
Q 015290          346 D--Y-----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGS-YRRD  407 (409)
Q Consensus       346 ~--~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s-~dg~  407 (409)
                      .  +     ..|..|++...+..............       ...   .+.++++| +|++|+.+. .+++
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-------G~~---p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-------GGH---SNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-------CTT---CCCEEECTTCTTEEEEECSSSCE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-------CCC---ccEEEecCCCCCEEEEEeCCCCe
Confidence            3  2     23777877653332222111110000       000   14799998 899877664 4443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.32  E-value=1.3e-09  Score=92.18  Aligned_cols=239  Identities=10%  Similarity=0.087  Sum_probs=149.6

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .+..++++|||+++++...+++|..|+.....                             ..+....            
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-----------------------------~~~~~~~------------   67 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-----------------------------QIHATVE------------   67 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----------------------------EEEEECS------------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-----------------------------EEEEcCC------------
Confidence            57789999999999999889988888865432                             1222233            


Q ss_pred             cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ..+.+++|  +++|+++++...++.+..|+.........                                         
T Consensus        68 ~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  104 (302)
T d2p4oa1          68 GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVE-----------------------------------------  104 (302)
T ss_dssp             SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEE-----------------------------------------
T ss_pred             CCcceEEE--cCCCCeEEEecCCceEEEEEeccccccee-----------------------------------------
Confidence            67899999  79999888888888888877654321110                                         


Q ss_pred             ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCce-eeeeec--CCCcCcCccCc
Q 015290          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-FNIVDM--KPSNMDDLTEV  269 (409)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~--~~~~~~~~~~~  269 (409)
                                     .+.  ........+.+++.++++++++. .++.+..++.. .+.. +.....  ...........
T Consensus       105 ---------------~~~--~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1         105 ---------------TLL--TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV-QPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             ---------------EEE--ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT-TTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             ---------------ecc--ccCCccccceeEEccCCCEEeeccccccceeeecc-CCcceeEecCCccceeeccCcccc
Confidence                           000  01233456789999999888877 78888888877 3321 111110  01111222234


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      ...+.++.+  .++++.+..+.|..++....... .....+..              ......++++++|++.++... +
T Consensus       167 ~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~--------------~~~pdgia~d~dG~l~va~~~~~  229 (302)
T d2p4oa1         167 ANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE--------------QTNIDDFAFDVEGNLYGATHIYN  229 (302)
T ss_dssp             EEEEEEETT--EEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE--------------SCCCSSEEEBTTCCEEEECBTTC
T ss_pred             cccccccCC--ceeeecCCCCeEEeccccccccc-cccccccC--------------CCCCcceEECCCCCEEEEEcCCC
Confidence            566777653  56667778888888887654321 00111111              234678999999997777654 8


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE---cCCCCeEEEcccCC
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYRR  406 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---spdg~~l~s~s~dg  406 (409)
                      .|..++..  ++............             ..++++|   ++|++.|..++..|
T Consensus       230 ~V~~i~p~--G~~~~~~~~~~~~~-------------~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         230 SVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cEEEECCC--CCEEEEEecCCCCC-------------CceEEEEcCCCCCCCEEEEECCCC
Confidence            89988865  55444443332211             1158999   77888887665544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=5.1e-09  Score=86.71  Aligned_cols=128  Identities=12%  Similarity=0.018  Sum_probs=74.0

Q ss_pred             eEEEeCCCCCeEEE-e-cCCe--EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CCeEEEE-
Q 015290          222 NSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV-  295 (409)
Q Consensus       222 ~~l~~~~~~~~l~~-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw-  295 (409)
                      ....++++++.++. . .++.  |.+.++.  ......       +...........|+|++ +.++..+. .+...+| 
T Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~--~~~~~~-------~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~i~~  199 (269)
T d2hqsa1         130 TEPTWFPDSQNLAFTSDQAGRPQVYKVNIN--GGAPQR-------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAK  199 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCCEE-------CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEE
T ss_pred             cccccccccccceecccccCCceEeeeecc--ccccee-------eeccccccccccccccc-ceeEEEeecCCceeeeE
Confidence            34456666665544 3 5554  4444554  222222       34455667788999999 76666554 4444444 


Q ss_pred             -eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee---c-CeEEEEEccCCCcceEEEecccC
Q 015290          296 -DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       296 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~---~-~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                       |...+..     .....              ........|||||++|+-.+   . ..|+++++.  +.....+.....
T Consensus       200 ~~~~~~~~-----~~~~~--------------~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d--g~~~~~lt~~~g  258 (269)
T d2hqsa1         200 QDLATGGV-----QVLSS--------------TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDG  258 (269)
T ss_dssp             EETTTCCE-----EECCC--------------SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SCCEEECCCSSS
T ss_pred             eecccccc-----eEeec--------------CccccceEECCCCCEEEEEEcCCCCcEEEEEECC--CCCEEEEeCCCC
Confidence             4443321     12211              23456789999999988543   2 678899986  455555554444


Q ss_pred             cccccccccCCCCccceeeEEEcCC
Q 015290          371 LRPKLCDLYNNDSIFDKFECSVSGD  395 (409)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~spd  395 (409)
                      .+               ...+|||-
T Consensus       259 ~~---------------~~p~WSP~  268 (269)
T d2hqsa1         259 QV---------------KFPAWSPY  268 (269)
T ss_dssp             EE---------------EEEEECCC
T ss_pred             cE---------------EeEEeCCC
Confidence            32               46889983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=5e-09  Score=86.33  Aligned_cols=148  Identities=8%  Similarity=0.002  Sum_probs=95.0

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~  297 (409)
                      .....+++.++++++++- .+..+..++..  +......      ..........++++|++ +++++...++.|..+|.
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~--~~~~~~~------~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAG--SKTQTVL------PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTT--CSSCEEC------CCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred             eecccccccccceeEeeccccccccccccc--cceeeee------eecccCCcceeeecCCC-CEeeecccccccccccc
Confidence            345789999999887776 77777777766  2222221      11112345789999999 88888888889999998


Q ss_pred             CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccc
Q 015290          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (409)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  376 (409)
                      .....     ..+..            ........++++++|+++++-.. +.|..++..  +.....+....-.     
T Consensus       169 ~~~~~-----~~~~~------------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~--~~~~~~~~~~~~~-----  224 (260)
T d1rwia_         169 ESNNQ-----VVLPF------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG--STTSTVLPFTGLN-----  224 (260)
T ss_dssp             TTCCE-----EECCC------------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTT--CSCCEECCCCSCC-----
T ss_pred             cccee-----eeeec------------cccCCCccceeeeeeeeeeeecCCCEEEEEeCC--CCeEEEEccCCCC-----
Confidence            76432     11111            00234678999999988777665 888888865  3333333221111     


Q ss_pred             cccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          377 DLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                               ....++++++|.++++-..++.|
T Consensus       225 ---------~P~~i~~d~~g~l~vad~~~~rI  247 (260)
T d1rwia_         225 ---------TPLAVAVDSDRTVYVADRGNDRV  247 (260)
T ss_dssp             ---------CEEEEEECTTCCEEEEEGGGTEE
T ss_pred             ---------CeEEEEEeCCCCEEEEECCCCEE
Confidence                     11589999999887775555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.22  E-value=8e-11  Score=106.50  Aligned_cols=161  Identities=13%  Similarity=0.075  Sum_probs=108.8

Q ss_pred             EEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---------CCeEE
Q 015290          223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVR  293 (409)
Q Consensus       223 ~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---------dg~i~  293 (409)
                      .+.|.++++++. -.++.+.+||+. +++....++  ...+..|...|.++.|+||| ++|+.++.         ++.+.
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~-t~~~~~~~~--~~~~~~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAE-YGNSSVFLE--NSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETT-TCCEEEEEC--TTTTTTSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECC-CCCEEEEEc--hhhhhhccCccceeEECCCC-CEEEEEECCcceeeeccCceEE
Confidence            577999887654 367789999999 555544432  33467778889999999999 88887743         56788


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccc
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP  373 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~  373 (409)
                      +||+.+++.     ..+..             +...+..+.|||||++||...++.+++|+... ++.......+.....
T Consensus        96 l~d~~~~~~-----~~l~~-------------~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~-g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          96 IYDLNKRQL-----ITEER-------------IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRITWTGKEDII  156 (470)
T ss_dssp             EEETTTTEE-----CCSSC-------------CCTTEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEECCSCCBTTTE
T ss_pred             EEECCCCcc-----ccccc-------------CCccccccccccCcceeeEeecccceEEECCC-CceeeeeeccCCCcc
Confidence            999998764     22222             24578899999999999998889999999875 555443332221110


Q ss_pred             --cccc-ccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          374 --KLCD-LYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       374 --~~~~-~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                        ...+ .++....-....+.|||||++||+...|.+
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             cccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence              0000 000000011246889999999999887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=3.1e-10  Score=99.09  Aligned_cols=118  Identities=10%  Similarity=0.089  Sum_probs=74.0

Q ss_pred             ceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeee-eecCCCcC---cCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNI-VDMKPSNM---DDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~-~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      ....++++|||+++++ + .+++|.+||+++-.+.+.- ++.+ ..+   ....-.....+|+++| +.+.+...|..|.
T Consensus       259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~-~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~  336 (441)
T d1qnia2         259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR-DTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVC  336 (441)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG-GGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred             CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc-eEEEeecccccCcccceecCCc-eEEEcccccceEE
Confidence            3578999999998865 5 8999999998731111000 0000 000   0111223556899999 8888889999999


Q ss_pred             EEeCCCccccccccccccccccccC-----CcccccccccceeeeEeccCCCEEEEee
Q 015290          294 LVDMRQSALCDHSARILRDAAESHG-----SKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      .|++....      +.+.. .....     ......+|...+.+.+++|||+||++++
T Consensus       337 kw~~~~~~------~~~~~-~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         337 KWNIADAI------KHYNG-DRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEHHHHH------HHHTT-CCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             Eeccchhh------hhhcc-CCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            99985321      11111 00000     0111257888999999999999999984

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=5.8e-08  Score=80.69  Aligned_cols=150  Identities=9%  Similarity=0.157  Sum_probs=102.3

Q ss_pred             ccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       218 ~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ......+++.++++.+++. ..+.+.+++..  +..+..+.     ...+......+++.+++ +++++....+.|.+||
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g-----~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFN  184 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccc-----ccccccccceeeeccce-eEEeeeccccceeeee
Confidence            3446788999999888877 77888888765  55555432     23355677899999998 8888888899999999


Q ss_pred             CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEEecccCcccc
Q 015290          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (409)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  374 (409)
                      ......     ..+..           .+.......+++.++|+++++-. . +.|.+|+..  ++.+..+.......  
T Consensus       185 ~~G~~~-----~~~g~-----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~--  244 (279)
T d1q7fa_         185 YEGQYL-----RQIGG-----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA--  244 (279)
T ss_dssp             TTCCEE-----EEESC-----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS--
T ss_pred             cCCcee-----eeecc-----------cccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCC--
Confidence            765321     22211           01123467899999999777643 3 679999964  88877775433211  


Q ss_pred             cccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD  407 (409)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~  407 (409)
                                 ....+++.|||.++++. .++.
T Consensus       245 -----------~p~~vav~~dG~l~V~~-~n~~  265 (279)
T d1q7fa_         245 -----------QCFDVALMDDGSVVLAS-KDYR  265 (279)
T ss_dssp             -----------CEEEEEEETTTEEEEEE-TTTE
T ss_pred             -----------CEeEEEEeCCCcEEEEe-CCCe
Confidence                       01589999999866554 4554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=4.3e-08  Score=80.91  Aligned_cols=149  Identities=15%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             ccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe--
Q 015290          216 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF--  291 (409)
Q Consensus       216 ~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~--  291 (409)
                      .+........|+|+|+.++..  .++...++...........       ............+++++...+++...+|.  
T Consensus        80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------CCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             eeecccccceecCCCCeeeEeeecCCccceeeccccccccee-------eeeccccccccccccccccceecccccCCce
Confidence            345566788999999988874  4444444333312222211       22334445566778877345555555554  


Q ss_pred             EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEEeccc
Q 015290          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHE  369 (409)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~~  369 (409)
                      |.+.++..+..     .....             .........|+|+++.++..+ + +...+|............. ..
T Consensus       153 i~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~  213 (269)
T d2hqsa1         153 VYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-ST  213 (269)
T ss_dssp             EEEEETTSSCC-----EECCC-------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CS
T ss_pred             Eeeeecccccc-----eeeec-------------ccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cC
Confidence            44455544322     11111             134567789999999988764 3 5555554443233333332 22


Q ss_pred             CcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      ...               ....|||||+.|+..+..
T Consensus       214 ~~~---------------~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         214 FLD---------------ETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             SSC---------------EEEEECTTSSEEEEEEEE
T ss_pred             ccc---------------cceEECCCCCEEEEEEcC
Confidence            222               478999999999866543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=1e-07  Score=80.50  Aligned_cols=245  Identities=11%  Similarity=0.106  Sum_probs=138.5

Q ss_pred             EEEEEECCCCCEEEEEec-------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290           35 VSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (409)
Q Consensus        35 v~~v~~~~~~~~la~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (409)
                      .-.++|.|+|+++++...       +|+|..||..++...                            .+.....     
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~----------------------------~~~~~~~-----   66 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------------------------VICKPEV-----   66 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE----------------------------EEECCEE-----
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE----------------------------EEECCcc-----
Confidence            456789999998776432       467888888776521                            1110000     


Q ss_pred             ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (409)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                        .........+.|  ++++..++++...+.|...+..++....... ..                              
T Consensus        67 --~~~~g~P~Gl~~--~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~-~~------------------------------  111 (314)
T d1pjxa_          67 --NGYGGIPAGCQC--DRDANQLFVADMRLGLLVVQTDGTFEEIAKK-DS------------------------------  111 (314)
T ss_dssp             --TTEECCEEEEEE--CSSSSEEEEEETTTEEEEEETTSCEEECCSB-CT------------------------------
T ss_pred             --ccCCCcceeEEE--eCCCCEEEEEECCCeEEEEeCCCcEEEEEec-cc------------------------------
Confidence              000034678999  7899888888877778888876553322110 00                              


Q ss_pred             ccccccceeEEEecCCcccceeeeeecccc-ccceeEEEeCCCCCeEEEe-cC-------------CeEEEEEccCCCce
Q 015290          188 LEWTENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DD-------------LRINLWNLEISDQC  252 (409)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~-~d-------------~~i~lwd~~~~~~~  252 (409)
                                                 .+. -...+.+++.++|.+.++- ..             ..-.+|.+...+..
T Consensus       112 ---------------------------~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~  164 (314)
T d1pjxa_         112 ---------------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM  164 (314)
T ss_dssp             ---------------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred             ---------------------------cccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCce
Confidence                                       000 1124667888888777663 10             11133433322332


Q ss_pred             eeeeecCCCcCcCccCceEEEEEeCCCC----CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290          253 FNIVDMKPSNMDDLTEVITSAEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
                      ...        ...-...+.++|+|++.    .++++-+..+.|..||+........ .+.+..   .+      .....
T Consensus       165 ~~~--------~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~---~~------~~~~~  226 (314)
T d1pjxa_         165 IQV--------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KKVWGH---IP------GTHEG  226 (314)
T ss_dssp             EEE--------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EEEEEE---CC------CCSSC
T ss_pred             eEe--------eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce-eeEEEE---cc------ccccc
Confidence            222        11223347899998762    1455556788898888754321100 011111   00      00112


Q ss_pred             ceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-EEEcccCC
Q 015290          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYRR  406 (409)
Q Consensus       329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~s~s~dg  406 (409)
                      ....+++..+|++.++... +.|.+||.+. ++.+..+.......               .+++|.||++. .++.+.+|
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~---------------t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTT
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCE---------------EEEEEeCCCCEEEEEECCCC
Confidence            3567999999997776654 9999999874 66666666543332               58999999974 45555555


Q ss_pred             CC
Q 015290          407 DN  408 (409)
Q Consensus       407 ~i  408 (409)
                      .|
T Consensus       291 ~i  292 (314)
T d1pjxa_         291 AV  292 (314)
T ss_dssp             EE
T ss_pred             cE
Confidence            43

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=7.7e-07  Score=75.22  Aligned_cols=241  Identities=10%  Similarity=0.101  Sum_probs=139.6

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (409)
                      .+-.++|.++|++.++-...++|..|+.+++..                           ...+....            
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~---------------------------~~~~~~~~------------   81 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------KRPFVSHK------------   81 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------EEEEECSS------------
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeE---------------------------EEEEeCCC------------
Confidence            456899999999777777888898888776542                           12222222            


Q ss_pred             cceEEEEEEecCCCCEEEEEeCC--Ce--EEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290          114 EKINRVRWCAAPNGSMFILSTND--KT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (409)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d--~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                      .....+++  +++|+++++...+  ..  +...+...+........                                  
T Consensus        82 ~~p~gla~--~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------------------  125 (319)
T d2dg1a1          82 ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED----------------------------------  125 (319)
T ss_dssp             SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS----------------------------------
T ss_pred             CCeeEEEE--CCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC----------------------------------
Confidence            46788999  7899877765432  22  33333333322211100                                  


Q ss_pred             ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c------CCeEEEEEccCCCceeeeeecCCCc
Q 015290          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSN  262 (409)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~  262 (409)
                                               ..-...++.+++.++|++.++. .      .+.+..++..  +..+..+      
T Consensus       126 -------------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~------  172 (319)
T d2dg1a1         126 -------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPI------  172 (319)
T ss_dssp             -------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEE------
T ss_pred             -------------------------CCcccCCcceeEEeccceeecccccccccCcceeEEEecc--cceeEEE------
Confidence                                     1112346778999999877764 2      1234444433  3333221      


Q ss_pred             CcCccCceEEEEEeCCCCCE-EEEEeCCCeEEEEeCCCcccccccc-ccccccccccCCcccccccccceeeeEeccCCC
Q 015290          263 MDDLTEVITSAEFHPIYCNL-LAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (409)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  340 (409)
                       ...-...+.++|+|++ +. +++-+..+.|..||+.......... ..... .        +.+ ......+++.++|+
T Consensus       173 -~~~~~~pnGia~s~dg-~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~-~--------~~~-~~~PdGl~vD~~G~  240 (319)
T d2dg1a1         173 -IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-Y--------FTG-HEGPDSCCIDSDDN  240 (319)
T ss_dssp             -EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-E--------CCS-SSEEEEEEEBTTCC
T ss_pred             -eeccceeeeeeecccc-ceEEEecccCCceEEEEEcCCCceeccccceeee-c--------cCC-ccceeeeeEcCCCC
Confidence             1122345789999999 64 4555678899999986432110000 00000 0        000 12356799999998


Q ss_pred             EEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       341 ~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                      +.++... +.|.+||..  ++.+..+........         ....+++++|.|++..|++.+.|
T Consensus       241 l~Va~~~~g~V~~~~p~--G~~l~~i~~P~~~~~---------~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         241 LYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             EEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEEEEcCCCEEEEECCC--CcEEEEEeCCCcCCC---------cCceeeeEEEeCCCCEEEEEcCC
Confidence            7776654 999999964  888888764432110         01112589999988777665544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.7e-08  Score=85.95  Aligned_cols=166  Identities=13%  Similarity=0.063  Sum_probs=85.7

Q ss_pred             cceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCC--cCcCcc---------CceEEEEEeCCCCCEEEEEe
Q 015290          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS--NMDDLT---------EVITSAEFHPIYCNLLAYSS  287 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~--~~~~~~---------~~v~~~~~~p~~~~~l~s~s  287 (409)
                      ..+....|+|||+.+|...++.|.+.+.. .+...+...-...  .+.+..         ..-.++.||||| ++||...
T Consensus       114 ~~l~~~~wSPDG~~iafv~~~nl~~~~~~-~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~  191 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAA  191 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEE
T ss_pred             cccceeeeccCCceEEEEecceEEEEecC-CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEEE
Confidence            34556789999999998877888888887 4444433211100  000111         112578899999 8888765


Q ss_pred             C-CCeEEEEeCCC--cccc--ccc--------------cccccccccccC-----CcccccccccceeeeEeccCCCEEE
Q 015290          288 S-RGFVRLVDMRQ--SALC--DHS--------------ARILRDAAESHG-----SKSFFTEIIASISDIKFANDGQHLL  343 (409)
Q Consensus       288 ~-dg~i~iwd~~~--~~~~--~~~--------------~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~g~~l~  343 (409)
                      . +..+..+.+..  +...  ...              +.++.. .....     ...........+..+.|+|++++++
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~-~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~  270 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec-CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEE
Confidence            3 33344443321  1000  000              000000 00000     0000112233567889999998777


Q ss_pred             Eee----c-CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290          344 SRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (409)
Q Consensus       344 sg~----~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  399 (409)
                      ...    + ..|.++|..+ +++...+... ..++...       .    ....|+|||+.+
T Consensus       271 ~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~~-------~----~~p~~~~dg~~~  320 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQ-------N----EEPVFSKDGRKF  320 (465)
T ss_dssp             EEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCC-------C----CCCEECTTSCSE
T ss_pred             EEEccccccceEEEEcCCC-CcEEEEEEEcCCceEecc-------C----CceeEccCCCee
Confidence            642    2 4688899876 6655544432 2222100       0    256888888854

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.94  E-value=1.9e-07  Score=80.75  Aligned_cols=170  Identities=8%  Similarity=-0.024  Sum_probs=96.9

Q ss_pred             eeccCCCCCceeecccccccceeEEEecCCcccceeeeee-ccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCC
Q 015290          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD  250 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~  250 (409)
                      -.+.+++++.+++...... ..|.+++............. ..........++|+|+++++.+.  .+++|.+|++. ..
T Consensus       148 h~v~~sPdG~~l~v~d~g~-d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~-~~  225 (365)
T d1jofa_         148 HGMVFDPTETYLYSADLTA-NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID-PA  225 (365)
T ss_dssp             EEEEECTTSSEEEEEETTT-TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC-TT
T ss_pred             eEEEECCCCCEEEEeeCCC-CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec-CC
Confidence            3455667777766655432 35667665542222222111 12345567899999999988665  78999999987 33


Q ss_pred             cee-----eeeecCCC-------cCcCccCceEEEEEeCCCCCEEEEEeC------CCeEEEEeCCCccccccccccccc
Q 015290          251 QCF-----NIVDMKPS-------NMDDLTEVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRD  312 (409)
Q Consensus       251 ~~~-----~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~  312 (409)
                      ...     ..+.+...       ....+......+.++|+| ++|+++..      .+.|..|++...............
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            221     11111110       011223346788999999 87776642      234777776543211100000000


Q ss_pred             cccccCCcccccccccceeeeEecc-CCCEEEEee-c-CeEEEEEccC
Q 015290          313 AAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y-MNLKLWDIRM  357 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~-~-~~v~iwd~~~  357 (409)
                                 .........++++| +|++|+++. + +.|.+|+++.
T Consensus       305 -----------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         305 -----------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             -----------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             -----------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                       00123467799998 899998875 4 9999999863

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.91  E-value=3.4e-07  Score=76.87  Aligned_cols=198  Identities=14%  Similarity=0.114  Sum_probs=121.6

Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      .+..+++  ++||+++++...+++|..|+.... ....                                          
T Consensus        29 ~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~g~-~~~~------------------------------------------   63 (302)
T d2p4oa1          29 FLENLAS--APDGTIFVTNHEVGEIVSITPDGN-QQIH------------------------------------------   63 (302)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTTCC-EEEE------------------------------------------
T ss_pred             CcCCEEE--CCCCCEEEEeCCCCEEEEEeCCCC-EEEE------------------------------------------
Confidence            5788999  799999999888998887775533 2111                                          


Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (409)
                                          ......+.+++|+++|+++++. .++.+..|+..........+.     ..........+
T Consensus        64 --------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~n~i  118 (302)
T d2p4oa1          64 --------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-----TLPDAIFLNGI  118 (302)
T ss_dssp             --------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-----ECTTCSCEEEE
T ss_pred             --------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc-----ccCCcccccee
Confidence                                1233567899999999988888 888888888763322222210     11234567899


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ec-CeEE
Q 015290          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLK  351 (409)
Q Consensus       274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~-~~v~  351 (409)
                      .+.+++ +++++.+.++.+..+|...+...     .+......  ..............+.++  +..+..+ +. +.|+
T Consensus       119 ~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         119 TPLSDT-QYLTADSYRGAIWLIDVVQPSGS-----IWLEHPML--ARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLL  188 (302)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEETTTTEEE-----EEEECGGG--SCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEccCC-CEEeeccccccceeeeccCCcce-----eEecCCcc--ceeeccCccccccccccc--CCceeeecCCCCeEE
Confidence            999999 99888888999998988775421     11110000  000011111234555555  4455544 33 8888


Q ss_pred             EEEccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290          352 LWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN  408 (409)
Q Consensus       352 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i  408 (409)
                      .++....+..  ...+.....+                ..+++++||++.++...++.|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~p----------------dgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCE
T ss_pred             eccccccccccccccccCCCCC----------------cceEECCCCCEEEEEcCCCcE
Confidence            8887642221  1222222222                379999999877777666654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=3.7e-06  Score=68.65  Aligned_cols=110  Identities=7%  Similarity=-0.019  Sum_probs=73.5

Q ss_pred             eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~  299 (409)
                      ...++++++++.+++. .++.|..++.. ... ...+      ....-.....++++++| +++++....+.|..++...
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~-~~~-~~~~------~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNN-QVVL------PFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTT-TCC-EEEC------CCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTC
T ss_pred             cceeeecCCCCEeeeccccccccccccc-cce-eeee------eccccCCCccceeeeee-eeeeeecCCCEEEEEeCCC
Confidence            4678999999887777 88899999987 222 2221      12233456899999999 8888888888888887655


Q ss_pred             ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                      ...     ..+..   .         .-.....++++++|.++++-.. ++|+..+..
T Consensus       213 ~~~-----~~~~~---~---------~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         213 TTS-----TVLPF---T---------GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SCC-----EECCC---C---------SCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CeE-----EEEcc---C---------CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            321     11111   0         0124578999999987666443 777766643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.65  E-value=4.6e-05  Score=63.13  Aligned_cols=227  Identities=10%  Similarity=0.047  Sum_probs=137.8

Q ss_pred             EEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (409)
Q Consensus        37 ~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (409)
                      ...|++ ++++..+=-..+.|..||..+++.                            ..+.- .            ..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----------------------------~~~~~-~------------~~   60 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHAL-P------------FM   60 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEEC-S------------SC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE----------------------------EEEEC-C------------CC
Confidence            456877 445545444678888898887652                            11111 1            56


Q ss_pred             eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (409)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
                      +.++.+  .++|.+++ ++.+ -+.++|..+++.........                                      
T Consensus        61 ~~~i~~--~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~--------------------------------------   98 (295)
T d2ghsa1          61 GSALAK--ISDSKQLI-ASDD-GLFLRDTATGVLTLHAELES--------------------------------------   98 (295)
T ss_dssp             EEEEEE--EETTEEEE-EETT-EEEEEETTTCCEEEEECSST--------------------------------------
T ss_pred             cEEEEE--ecCCCEEE-EEeC-ccEEeecccceeeEEeeeec--------------------------------------
Confidence            788888  46775555 4555 48888998887654422100                                      


Q ss_pred             eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c----CCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (409)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (409)
                                         ......++.+.+.|+|++.++. .    .+.-.+|.+. .+.....       .. .-...
T Consensus        99 -------------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~-------~~-~~~~~  150 (295)
T d2ghsa1          99 -------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL-------FA-DISIP  150 (295)
T ss_dssp             -------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE-------EE-EESSE
T ss_pred             -------------------CCCcccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEE-------ee-ccCCc
Confidence                               1122356788899999877764 2    2344667766 4443332       11 22345


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccc-ccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (409)
Q Consensus       271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~  348 (409)
                      ..++|++++..++++-+..+.|..|++...... ......+..          +.+-.+....+++..+|++.++.-. +
T Consensus       151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~----------~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec----------cCcccccccceEEcCCCCEEeeeeCCC
Confidence            789999999335566667888998887542211 000011110          0111345778899999987776644 8


Q ss_pred             eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc-CCCCeEEE
Q 015290          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFAT  401 (409)
Q Consensus       349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~s  401 (409)
                      .|..||.+  ++.+..+......+               ++++|- ||.+.|..
T Consensus       221 ~V~~~dp~--G~~~~~i~lP~~~~---------------T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         221 AVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEE
T ss_pred             ceEEecCC--CcEeeEecCCCCce---------------EEEEEeCCCCCEEEE
Confidence            99999964  88888887654332               689996 67665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.61  E-value=1.6e-05  Score=66.66  Aligned_cols=119  Identities=9%  Similarity=0.086  Sum_probs=76.4

Q ss_pred             eeEEEeCCCCC----eEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcC-ccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          221 INSISNNSDCE----TFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       221 v~~l~~~~~~~----~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      .+.++|+|+++    .|+.+  ..+.|..||+...+..... ..- ..+.+ .......+++.++| +++++....+.|.
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-~~~-~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~  250 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-KVW-GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIE  250 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-EEE-EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEE
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee-eEE-EEccccccccceeeEEecCC-cEEEEEcCCCEEE
Confidence            46789988764    45544  7888999988733332211 000 00111 22345789999999 8888877889999


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE-Eeec-CeEEEEEccCCC
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDS  359 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-sg~~-~~v~iwd~~~~~  359 (409)
                      +||.+.++..    ..+..             .....++++|.||++.|. +.+. +.|...++...|
T Consensus       251 ~~dp~~g~~~----~~i~~-------------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         251 VFGPDGGQPK----MRIRC-------------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EECTTCBSCS----EEEEC-------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEeCCCCEEE----EEEEC-------------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            9998876531    22222             023578899999997554 4444 888888886544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.51  E-value=5.1e-05  Score=62.33  Aligned_cols=191  Identities=8%  Similarity=0.063  Sum_probs=116.2

Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      ....|++  +++++.+++-..++.|++||.+. +...........                                   
T Consensus        24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~-----------------------------------   65 (279)
T d1q7fa_          24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKR-----------------------------------   65 (279)
T ss_dssp             CEEEEEE--CTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSS-----------------------------------
T ss_pred             CccEEEE--cCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCC-----------------------------------
Confidence            4678999  78998887777788899998753 333221100000                                   


Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                          .+.......+++.++ +..+++.  .++.|..++..  +.....+      -........
T Consensus        66 --------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~~~~~------~~~~~~~p~  117 (279)
T d1q7fa_          66 --------------------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKF------GATILQHPR  117 (279)
T ss_dssp             --------------------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEE------CTTTCSCEE
T ss_pred             --------------------cccccccccccccccccccceeccCCcccccccccc--ccceeec------CCCcccccc
Confidence                                111122344555444 3444443  56677777765  4444443      122345678


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeE
Q 015290          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v  350 (409)
                      .+++.++| .++++....+.+.+++.....     +..+..           ..+......+++.++|+.+++... +.|
T Consensus       118 ~~avd~~G-~i~v~~~~~~~~~~~~~~g~~-----~~~~g~-----------~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         118 GVTVDNKG-RIIVVECKVMRVIIFDQNGNV-----LHKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             EEEECTTS-CEEEEETTTTEEEEECTTSCE-----EEEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             eeccccCC-cEEEEeeccceeeEeccCCce-----eecccc-----------cccccccceeeeccceeEEeeeccccce
Confidence            89999999 888887777888888865432     122221           111345778899999987777665 999


Q ss_pred             EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (409)
Q Consensus       351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s  403 (409)
                      ++||..  ++.+..+.......             ....++++|+|+++++-+
T Consensus       181 ~~~d~~--G~~~~~~g~~g~~~-------------~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         181 KVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADN  218 (279)
T ss_dssp             EEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEEC
T ss_pred             eeeecC--Cceeeeeccccccc-------------CCcccccccCCeEEEEEC
Confidence            999975  77777764211110             114788888887666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.49  E-value=5.6e-06  Score=68.11  Aligned_cols=71  Identities=15%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             EECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290           39 EFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (409)
Q Consensus        39 ~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (409)
                      ..+||  |+.+|..+ +|.|.+.|+.+++.                            +.+..+.            +.+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~----------------------------~~Lt~~~------------~~~   43 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST----------------------------RKIVSNL------------GVI   43 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE----------------------------EEEECSS------------SEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE----------------------------EEEecCC------------Ccc
Confidence            35788  99988775 56788889887762                            3344455            678


Q ss_pred             EEEEEEecCCCCEEEEEeC-C-----CeEEEEEcCCceeeee
Q 015290          117 NRVRWCAAPNGSMFILSTN-D-----KTIKLWKVRDQKVKKI  152 (409)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~~  152 (409)
                      ...+|  ||||+.|+.... +     ..|.+++..+++...+
T Consensus        44 ~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          44 NNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCEEE--CCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            88999  899999986532 1     1366666666655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=0.00011  Score=61.62  Aligned_cols=162  Identities=14%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      .+..++|  +++|++.++-...+.|..|+..++......                                         
T Consensus        41 ~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-----------------------------------------   77 (319)
T d2dg1a1          41 QLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF-----------------------------------------   77 (319)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-----------------------------------------
T ss_pred             CcEeCEE--CCCCCEEEEECCCCEEEEEECCCCeEEEEE-----------------------------------------
Confidence            4568889  788886666667777877777665432211                                         


Q ss_pred             eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC--CeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (409)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (409)
                                          .........++++++|+++++. .+  ....++.+......+..+..    -..-.....
T Consensus        78 --------------------~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~n  133 (319)
T d2dg1a1          78 --------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE----DLSTAYCID  133 (319)
T ss_dssp             --------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC----SSSSCCCEE
T ss_pred             --------------------eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc----CCCcccCCc
Confidence                                1223346789999999888775 32  23344443322222222100    011124578


Q ss_pred             EEEEeCCCCCEEEEEeC------CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          272 SAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       272 ~~~~~p~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      .+.+.++| .+.++...      .+.+..++...+..     ..+..             .-...+.++|+||++.|..+
T Consensus       134 d~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~-----~~~~~-------------~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         134 DMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQ-------------NISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             EEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEE-------------EESSEEEEEECTTSSEEEEE
T ss_pred             ceeEEecc-ceeecccccccccCcceeEEEeccccee-----EEEee-------------ccceeeeeeeccccceEEEe
Confidence            89999999 87665432      12344444433221     11111             02345779999999977766


Q ss_pred             e-c-CeEEEEEccCCCcce
Q 015290          346 D-Y-MNLKLWDIRMDSTPV  362 (409)
Q Consensus       346 ~-~-~~v~iwd~~~~~~~~  362 (409)
                      . . +.|..||+..++...
T Consensus       195 d~~~~~I~~~d~~~~g~~~  213 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTI  213 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSE
T ss_pred             cccCCceEEEEEcCCCcee
Confidence            4 3 999999987544433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.2e-06  Score=76.31  Aligned_cols=160  Identities=17%  Similarity=0.163  Sum_probs=96.8

Q ss_pred             EEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe---------CCCeEEE
Q 015290          224 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---------SRGFVRL  294 (409)
Q Consensus       224 l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s---------~dg~i~i  294 (409)
                      ..|.+++.++....+|.|.+||+. ++.....++..  .+  ....+....|+||+ ++++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~-~~~~~~l~~~~--~~--~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVE-TNTSTVLIEGK--KI--ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGG-GCCCEEEECTT--TT--TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECC-CCCEEEEEcCc--cc--cccccceeEECCCC-CeEEEEEcccceeEeeccccEEE
Confidence            368888877655578899999998 44433332211  12  12345678899999 7776653         3577889


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEeccc-Cccc
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRP  373 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~-~~~~  373 (409)
                      +|+.++..     ..+.. .         ......+....|||||+.||-..++.|.+.+... +...+...... ..+.
T Consensus        96 ~d~~~~~~-----~~l~~-~---------~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~lt~~g~~~~i~  159 (465)
T d1xfda1          96 SKIPHGDP-----QSLDP-P---------EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIY  159 (465)
T ss_dssp             EESSSCCC-----EECCC-T---------TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEE
T ss_pred             EEccCCce-----eeccC-c---------cCCccccceeeeccCCceEEEEecceEEEEecCC-CceEEEecccCcceee
Confidence            99988753     22211 0         0012356678999999999998889999999864 44444433221 1110


Q ss_pred             -cccc-ccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290          374 -KLCD-LYNNDSIFDKFECSVSGDGLHFATGSYR  405 (409)
Q Consensus       374 -~~~~-~~~~~~~~~v~~~~~spdg~~l~s~s~d  405 (409)
                       ...+ +++.+-...-..+.|||||++||....|
T Consensus       160 nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence             0011 1111100001467899999999987654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.03  E-value=0.0012  Score=54.19  Aligned_cols=99  Identities=14%  Similarity=0.002  Sum_probs=64.4

Q ss_pred             eeEEEeCCCCCeEEEe--cCCeEEEEEccCCCce-----eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290          221 INSISNNSDCETFVSA--DDLRINLWNLEISDQC-----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (409)
Q Consensus       221 v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~  293 (409)
                      .+.++|+++++.++.+  ..+.|..|++......     ...+     ...+..+....++++.+| ++.++.-..+.|.
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~-----~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~  223 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-----DSTGIKGGMDGSVCDAEG-HIWNARWGEGAVD  223 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-----ECTTSSSEEEEEEECTTS-CEEEEEETTTEEE
T ss_pred             cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe-----ccCcccccccceEEcCCC-CEEeeeeCCCceE
Confidence            4678999999877665  6788988887522111     1111     123344567899999999 8888777788999


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEec-cCCCEEE
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLL  343 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~  343 (409)
                      .||.. ++.    +..+.. +            ...+++++|- +|.+.|.
T Consensus       224 ~~dp~-G~~----~~~i~l-P------------~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         224 RYDTD-GNH----IARYEV-P------------GKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             EECTT-CCE----EEEEEC-S------------CSBEEEEEEESTTSCEEE
T ss_pred             EecCC-CcE----eeEecC-C------------CCceEEEEEeCCCCCEEE
Confidence            99965 433    233332 0            1358899995 6665444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.88  E-value=0.0022  Score=51.80  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=40.8

Q ss_pred             ceEEEEEeCCCCCEEEEEeC--CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          269 VITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       269 ~v~~~~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      ......++++.  .+.....  ...|.++|+.+++.     +.+..              ........|+|||+.|+...
T Consensus       193 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~-----~~lt~--------------~~~~~~~~~SpDG~~I~f~~  251 (281)
T d1k32a2         193 HVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDL-----RKHTS--------------FTDYYPRHLNTDGRRILFSK  251 (281)
T ss_dssp             CCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSC-----EECCC--------------CCSSCEEEEEESSSCEEEEE
T ss_pred             ccceeeeeccc--cceecccccccceEEEeCCCCce-----EEeec--------------CCCcccccCcCCCCEEEEEe
Confidence            34455666653  3333333  33577778877653     22221              01122346899999988777


Q ss_pred             cCeEEEEEccC
Q 015290          347 YMNLKLWDIRM  357 (409)
Q Consensus       347 ~~~v~iwd~~~  357 (409)
                      ++.|+++|+.+
T Consensus       252 ~~~l~~~d~~~  262 (281)
T d1k32a2         252 GGSIYIFNPDT  262 (281)
T ss_dssp             TTEEEEECTTT
T ss_pred             CCEEEEEECCC
Confidence            78999999974

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.39  E-value=0.018  Score=48.54  Aligned_cols=118  Identities=11%  Similarity=0.027  Sum_probs=66.6

Q ss_pred             ceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceee-eeecCC--CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN-IVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i  294 (409)
                      ....+.++|||++++++  .+.++.++|++.-...+. ..+.+.  .......-....-+|+..| +-..+.--|..|.-
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k  354 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK  354 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEE
Confidence            35678999999999876  799999999972111110 000000  0011123345677899888 66666668999999


Q ss_pred             EeCCCccc------cccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          295 VDMRQSAL------CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       295 wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                      |++.....      ....+..+..|        .-.+|......-...|||+||++..
T Consensus       355 w~~~~~~~~~~~~~~~~v~~k~~v~--------y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         355 WNIEDAIRAYAGEKVDPIKDKLDVH--------YQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECS--------SCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EecchhhhhhccccCCcceeccccc--------cCCCCCccCcCCcCCCCCCEEEEec
Confidence            99854210      00000111110        0123433344445678999999875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.30  E-value=0.038  Score=46.65  Aligned_cols=77  Identities=12%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             EEEEECCCCCEEEEEecC-CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290           36 SAIEFDKTGDYLAVGDRG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (409)
Q Consensus        36 ~~v~~~~~~~~la~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (409)
                      .+.++.++|++++.|+.+ ..+.+||..+..-                         .....+....            .
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w-------------------------~~~~~~~~~r------------~  121 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------------------------IPGPDMQVAR------------G  121 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------------------------EECCCCSSCC------------S
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcc-------------------------cccccccccc------------c
Confidence            456788999999988755 5899999887542                         1111111111            1


Q ss_pred             ceEEEEEEecCCCCEEEEEeCC------CeEEEEEcCCceeeee
Q 015290          115 KINRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKI  152 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~  152 (409)
                      .. ..+.  .+||++++.++.+      ..+.+||..+++....
T Consensus       122 ~~-~~~~--~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3         122 YQ-SSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             SC-EEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             cc-ceee--ecCCceeeeccccccccccceeeeecCCCCceeec
Confidence            22 2333  3789888888643      3688999988876544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.16  E-value=0.021  Score=48.19  Aligned_cols=99  Identities=11%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             EEEeC---CCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC-CEEEEEeCCC------
Q 015290          223 SISNN---SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRG------  290 (409)
Q Consensus       223 ~l~~~---~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~s~dg------  290 (409)
                      .+.+.   +||+++++.  .+.+|.+-|++ ..++.+++.++      ....+..++..+++. .|++.++.+.      
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~-~fkt~kIi~iP------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECc-ceeeeEEEecC------CCCCCceeecccCCCeEEEEccCccccccCCC
Confidence            45554   379999887  78999999998 66666654332      223455666654331 4666655432      


Q ss_pred             ------------eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290          291 ------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (409)
Q Consensus       291 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~  346 (409)
                                  .+.++|..+.+..    .....              ...+..++++++|+++++.+
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~----~QV~V--------------~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEE
T ss_pred             CccccchhhcceEEEEEecCCceEE----EEeee--------------CCChhccccCCCCCEEEEEe
Confidence                        3566777665432    11111              23466789999999988754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=0.042  Score=43.81  Aligned_cols=209  Identities=8%  Similarity=0.096  Sum_probs=111.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (409)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (409)
                      |..+.|+.-+ ..++.++|+++++..+...+.-.             ..+.-..++...-+     ..+..|.-|+++..
T Consensus        72 P~~~IiALra-g~~LQiFnletK~klks~~~~e~-------------VvfWkWis~~~L~l-----VT~taVYHW~~~g~  132 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-------------VTFWKWISLNTVAL-----VTDNAVYHWSMEGE  132 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-------------CCEEEESSSSEEEE-----ECSSEEEEEESSSS
T ss_pred             CCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-------------cEEEEecCCCEEEE-----EcCCceEEEcccCC
Confidence            5555665554 45788888877765554332210             01110001110111     12446777887543


Q ss_pred             ccceeeeeecccc----ccceeEEEeCCCCCeEEE-e---c----CCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290          205 VHARCQKVYPHAH----DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (409)
Q Consensus       205 ~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~-~---~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (409)
                      .  ++.+.| ..|    ...|..-..+++.++++. |   .    .|.+.||..+  +..-+.       +.+|.+....
T Consensus       133 s--~P~k~f-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e--r~~sQ~-------ieGhaa~F~~  200 (327)
T d1utca2         133 S--QPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQP-------IEGHAASFAQ  200 (327)
T ss_dssp             C--CCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--TTEEEE-------ECCSEEEEEE
T ss_pred             C--Cchhhh-hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec--cCcCcc-------ccceeeeeEE
Confidence            2  455554 333    245667777899998874 3   2    3567899988  333333       5777665555


Q ss_pred             EEEeCCC--CCEEEEEe---CCCeEEEEeCCCccccccc--cccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290          273 AEFHPIY--CNLLAYSS---SRGFVRLVDMRQSALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (409)
Q Consensus       273 ~~~~p~~--~~~l~s~s---~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg  345 (409)
                      +.+.-+.  .++|+.+.   ..+.++|.++.........  .+..+. ...|..      -.+-..++..|+.-..+..-
T Consensus       201 ~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi-~fppea------~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         201 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEA------QNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             ECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEEC-CCCTTC------TTCCEEEEEEETTTTEEEEE
T ss_pred             EEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEE-ECCccc------cCCcEEEEEeeccCCEEEEE
Confidence            5443211  12444432   3367888888663211110  011111 001100      02334568888877777777


Q ss_pred             ec-CeEEEEEccCCCcceEEEecccCcc
Q 015290          346 DY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (409)
Q Consensus       346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~  372 (409)
                      +. |.|++||+.+ +.++..-+-....+
T Consensus       274 TK~G~i~lyDleT-gt~i~~nRIs~~~i  300 (327)
T d1utca2         274 TKYGYIHLYDLET-GTCIYMNRISGETI  300 (327)
T ss_dssp             ETTSEEEEEETTT-CCEEEEEECCSSCE
T ss_pred             ecCcEEEEEEccc-ccEEEEeecCCCce
Confidence            76 9999999997 77776655444443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.09  Score=41.69  Aligned_cols=112  Identities=14%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCC--eEE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVR  293 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg--~i~  293 (409)
                      ..+..+++..-+..|..+  ..+.|.+.++. .......       .......+..++++|.. .++.... ..+  .|.
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~  149 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVL-------FDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE  149 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecC-CceEEEE-------ecccccCCcEEEEeccc-CcEEEeecCCCCcEEE
Confidence            346788887766666544  67899999988 3332222       12223567899999987 5554332 222  343


Q ss_pred             EEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      .-++.....     ..+..            ..-.....+++++.++.|.-.+ . +.|...|+.
T Consensus       150 r~~~dG~~~-----~~i~~------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         150 TSHMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             EEETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EecCCCCCc-----eeeee------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            334443221     11111            0023567899998888777664 3 889999986

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.63  E-value=0.15  Score=42.74  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             EEEEEecCCCCEEEEEeCC-CeEEEEEcCCceeee
Q 015290          118 RVRWCAAPNGSMFILSTND-KTIKLWKVRDQKVKK  151 (409)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~  151 (409)
                      ...+  .+++++++.++.+ ..+.+||..+.....
T Consensus        80 ~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~  112 (387)
T d1k3ia3          80 GISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP  112 (387)
T ss_dssp             EEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred             EEEE--ecCCcEEEeecCCCcceeEecCccCcccc
Confidence            4456  5899888888655 589999998876644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.47  E-value=0.11  Score=42.94  Aligned_cols=98  Identities=6%  Similarity=0.130  Sum_probs=55.6

Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---------------CCeEEEEeCCCccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------------RGFVRLVDMRQSAL  302 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---------------dg~i~iwd~~~~~~  302 (409)
                      ..+|.+|++......+.-+..-   -.......+++++..++ .+++|-..               -+.-.+|....++.
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v---~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTI---RHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE---CCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             CceeEEEEEeCCCCeEEEEeec---CCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence            5678888886333322211000   11223457889998888 77777311               01223333333221


Q ss_pred             cccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccC
Q 015290          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM  357 (409)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~  357 (409)
                           +....             .-...+.++++||+++|+.+. . +.|+.|++..
T Consensus       199 -----~~~~~-------------~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         199 -----RVVAE-------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             -----EEEEE-------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             -----EEEcC-------------CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence                 11111             124578899999999988875 3 9999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.15  Score=40.24  Aligned_cols=122  Identities=13%  Similarity=0.129  Sum_probs=69.4

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iw  295 (409)
                      ..+..++++|...+++-.  ..+..+|+.....+.....+      ....-.....+++++.+ +.|+.+ ...+.|...
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i------~~~~~~~P~glaiD~~~-~~lYw~d~~~~~I~~~  194 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL------AQDNLGLPNGLTFDAFS-SQLCWVDAGTHRAECL  194 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE------ECTTCSCEEEEEEETTT-TEEEEEETTTTEEEEE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee------eeecccccceEEEeecC-cEEEEEeCCCCEEEEE
Confidence            446788999887777654  22333455443234332222      12223456899999887 555444 567889888


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEEecc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      |+......    .+...              .....++++.  +.+|...+ . +.|...|..+ ++....+...
T Consensus       195 ~~~g~~~~----~v~~~--------------~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~-g~~~~~~~~~  248 (263)
T d1npea_         195 NPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHPH  248 (263)
T ss_dssp             ETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEEEEEECCS
T ss_pred             ECCCCCeE----EEECC--------------CCCcEEEEEE--CCEEEEEECCCCEEEEEECCC-CccceEECCC
Confidence            88764321    11221              1123467765  44565553 3 8888888875 6666665433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.56  E-value=0.6  Score=40.01  Aligned_cols=59  Identities=15%  Similarity=0.097  Sum_probs=40.4

Q ss_pred             cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc-CcCccCceEEEEEeCC
Q 015290          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPI  278 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~  278 (409)
                      ...++|+|.|+++.|++- ..|.|++++.. .+....+..+.... ...-......++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            466899999999988888 68999999877 44444333322211 1222356789999986

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.66  E-value=0.83  Score=37.44  Aligned_cols=103  Identities=4%  Similarity=0.066  Sum_probs=57.0

Q ss_pred             eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE--eCCCCC-EEEEEeCCCeEEEEeCCC---cccccccccccccc
Q 015290          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRDA  313 (409)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~  313 (409)
                      +|.+|.+......+..+.........-...++.+++  +|.... +++....+|.+..|.+..   +......++.+.. 
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-
Confidence            577787763333333321111111111234667776  555323 566677889998887633   2222222333333 


Q ss_pred             ccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~  356 (409)
                                   ...+..|.+.+..+.|..+.+ ..|..++..
T Consensus       179 -------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         179 -------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             -------------SSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             -------------CCccceEEEeCCCCcEEEecCccceEEEEec
Confidence                         346888999998888888865 555555554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.59  E-value=0.94  Score=37.04  Aligned_cols=33  Identities=3%  Similarity=-0.039  Sum_probs=24.9

Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~  300 (409)
                      ...+.++++|++..++++-+..+.|++|++...
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            457899999998334455567889999998753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.20  E-value=1.7  Score=38.40  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCccc
Q 015290          281 NLLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       281 ~~l~s~s~dg~i~iwd~~~~~~  302 (409)
                      .++++|+.||.++.+|.++++.
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECCCCcE
Confidence            5777899999999999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=1.2  Score=34.89  Aligned_cols=123  Identities=10%  Similarity=-0.000  Sum_probs=68.7

Q ss_pred             cceeEEEeCCCCCeEEEe---cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE-EEeCCCeEEE
Q 015290          219 FNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRL  294 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~i~i  294 (409)
                      .....++++|...+|.-.   ..+.|.-.++.  +.....+      ....-.....+++++.+ ..|+ +-...+.|..
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l------~~~~~~~p~gl~iD~~~-~~lYw~d~~~~~I~~  190 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS  190 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEE------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceecc------cccccceeeEEEeeccc-cEEEEecCCcCEEEE
Confidence            446788998866555543   34456666665  3333322      22233456899999987 5444 4456788888


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--cCeEEEEEccCCCcceEEEecc
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--~~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      .|+.....    ...... .          .......++++.  +.+|...+  .+.|...+... +.....+...
T Consensus       191 ~~~dG~~~----~~~~~~-~----------~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~-g~~~~~~~~~  248 (266)
T d1ijqa1         191 IDVNGGNR----KTILED-E----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLAEN  248 (266)
T ss_dssp             EETTSCSC----EEEEEC-T----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEEECS
T ss_pred             EECCCCCE----EEEEeC-C----------CcccccEEEEEE--CCEEEEEECCCCeEEEEECCC-CcceEEEEcC
Confidence            88865431    011111 0          001234556666  34555543  38888888764 6655555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.46  E-value=3.2  Score=36.43  Aligned_cols=55  Identities=9%  Similarity=0.064  Sum_probs=34.2

Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  302 (409)
                      .|.+.-||+. +++.+-.+....     +   ..+-.+.-.+ .+++.|+.||.++.+|.++++.
T Consensus       437 ~G~l~A~D~~-tGk~~W~~~~~~-----~---~~gg~l~Tag-glVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         437 SGALLAWDPV-KQKAAWKVPYPT-----H---WNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEEETT-TTEEEEEEEESS-----S---CCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceEEEeCC-CCeEeeeccCCC-----C---CCCceeEECC-CEEEEECCCCcEEEEECCCCcE
Confidence            3567777877 555554432221     1   1111122334 5777899999999999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.14  E-value=3.5  Score=36.17  Aligned_cols=32  Identities=6%  Similarity=0.144  Sum_probs=24.8

Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEecccC
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  370 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~  370 (409)
                      .|.++++|+ |+.++.+|.++ |+.+-.+.....
T Consensus       468 agglVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~  500 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADK-GEALWQFEAQSG  500 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred             CCCEEEEECCCCcEEEEECCC-CcEeEEEECCCC
Confidence            456777776 59999999997 888887775443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.09  E-value=3.1  Score=35.37  Aligned_cols=33  Identities=9%  Similarity=0.192  Sum_probs=27.0

Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEeccCCc
Q 015290           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (409)
Q Consensus        33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~   65 (409)
                      +.-++|+|.|||++|++--..|.|++++..++.
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            467899999999988876557999999877654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=2.3  Score=33.10  Aligned_cols=113  Identities=5%  Similarity=-0.040  Sum_probs=69.0

Q ss_pred             cceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEE
Q 015290          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLV  295 (409)
Q Consensus       219 ~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iw  295 (409)
                      ..+..|++.+.+..|..+  ..+.|.+.++. .......       ..........++++|....++.+- +..+.|...
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~-------~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEE-------EcCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence            345678888766666655  67889999998 3333332       223345678999998651444332 234456666


Q ss_pred             eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEcc
Q 015290          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  356 (409)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~  356 (409)
                      ++.....    ......             .-.....+++++.++.|.-+. . +.|...++.
T Consensus       149 ~~dGs~~----~~l~~~-------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         149 GLNGVDI----YSLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             ETTSCCE----EEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCCCce----eccccc-------------ccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            6654321    011111             023467899999888777664 3 889988986

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.56  E-value=2.5  Score=33.37  Aligned_cols=122  Identities=10%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc
Q 015290          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (409)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  317 (409)
                      ...+.+.|+.......+.           .-...+.-.+|.. +.||.-+ ...+.+||+++.+.    ++.+..     
T Consensus        44 ~~~VvIidl~n~~~~~Rr-----------pi~AdsAIMhP~~-~IiALra-g~~LQiFnletK~k----lks~~~-----  101 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRR-----------PISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSK----MKAHTM-----  101 (327)
T ss_dssp             EEEEEEEETTSTTSCEEE-----------ECCCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEE----EEEEEC-----
T ss_pred             CceEEEEECCCCCcceec-----------ccchhhhhcCCCC-cEEEEec-CCeEEEEehhHhhh----hceEEc-----
Confidence            347888888744433322           1122366788987 7777665 56899999998653    233333     


Q ss_pred             CCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290          318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (409)
Q Consensus       318 ~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  397 (409)
                               ..+|.--.|-.+ +.|+-.++..|+-|+++.+..+.+.+..|.....           ..|..-..++|++
T Consensus       102 ---------~e~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~-----------~QIInY~~d~~~k  160 (327)
T d1utca2         102 ---------TDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQK  160 (327)
T ss_dssp             ---------SSCCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT-----------CEEEEEEECTTSC
T ss_pred             ---------CCCcEEEEecCC-CEEEEEcCCceEEEcccCCCCchhhhhhcccccC-----------ceEEEEEECCCCC
Confidence                     235655666544 5777777789999999654578888888876531           2235788888999


Q ss_pred             eEEEc
Q 015290          398 HFATG  402 (409)
Q Consensus       398 ~l~s~  402 (409)
                      +++..
T Consensus       161 W~~l~  165 (327)
T d1utca2         161 WLLLT  165 (327)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.54  E-value=5.1  Score=33.58  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=24.8

Q ss_pred             cEEEEEECCCCCEEEEEe-cC----CeEEEEeccCCcC
Q 015290           34 IVSAIEFDKTGDYLAVGD-RG----GRVILFETVGGKN   66 (409)
Q Consensus        34 ~v~~v~~~~~~~~la~~~-~d----g~i~iw~~~~~~~   66 (409)
                      .+..+++|||++++|.+- .+    ..|+++|+.+++.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            455778999999998543 22    3799999998863

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.84  E-value=3.5  Score=30.67  Aligned_cols=223  Identities=11%  Similarity=0.018  Sum_probs=104.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc----eeEEEec
Q 015290          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM----ATKIANV  201 (409)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~  201 (409)
                      +.++++++...|.+.++-+.+++..+..+....               ....-.+...++........|    .+.+-++
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~---------------~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nl   89 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPIN---------------SVLDPHYGVGRVILVRDVSKGAEQHALFKVNT   89 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCS---------------EECEECTTBSEEEEEEECSTTSCCEEEEEEET
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEeccccc---------------CcCCCccCcceEEEEeehhcCcceeeEEEEcc
Confidence            344777887889999999888877665432111               000001111112211111111    3333333


Q ss_pred             CCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC--ccCceEEEEEeCC
Q 015290          202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPI  278 (409)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~  278 (409)
                      ...  ++-.+.- ....-.|.+++.. +.+..++| ......+|-++ .+...+..++++-.+..  ....|..+.+-..
T Consensus        90 k~~--GEE~~i~-spk~vRI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g  164 (313)
T d2hu7a1          90 SRP--GEEQRLE-AVKPMRILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGG  164 (313)
T ss_dssp             TST--TCEEECT-TSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEET
T ss_pred             CCC--CeeeEec-CCceEEEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecC
Confidence            311  1111110 1111345556554 33455567 66777888888 66665554444322110  1233444444333


Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--C--eEEEE
Q 015290          279 YCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLW  353 (409)
Q Consensus       279 ~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~--~v~iw  353 (409)
                      ++.-|.++.. .|.+++++...                            +.++.....+..+. +++-+  +  ...-+
T Consensus       165 ~~~sfF~adl~SG~lri~tpke----------------------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~  215 (313)
T d2hu7a1         165 GRVSLFTSNLSSGGLRVFDSGE----------------------------GSFSSASISPGMKV-TAGLETAREARLVTV  215 (313)
T ss_dssp             TEEEEEEEETTTEEEEEECCSS----------------------------EEEEEEEECTTSCE-EEEEEESSCEEEEEE
T ss_pred             CcceEEEEecccCCEEEecCCC----------------------------CcccceeEccCcee-eeccCCCCceEEEEE
Confidence            3244444444 56666665443                            35666666776555 44321  2  22244


Q ss_pred             EccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290          354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR  406 (409)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg  406 (409)
                      |++.  .....+.-.+.....    +   ....|+.+-+.||+++++.+-.||
T Consensus       216 D~~s--~~yerve~P~kd~~s----y---~p~~I~~~~Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         216 DPRD--GSVEDLELPSKDFSS----Y---RPTAITWLGYLPDGRLAVVARREG  259 (313)
T ss_dssp             CTTT--CCEEECCCSSCHHHH----H---CCSEEEEEEECTTSCEEEEEEETT
T ss_pred             eccc--CceeeeecCccccee----e---cceEEEeeeeCCCCcEEEEEecCC
Confidence            7663  333333222221100    0   111124566999999988877776

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.01  E-value=9.2  Score=33.46  Aligned_cols=62  Identities=6%  Similarity=-0.040  Sum_probs=40.0

Q ss_pred             CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecc
Q 015290          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH  368 (409)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~  368 (409)
                      |.|.-||+.+++.      .|+...            ..+...-..+-.|.+|++|+ |+.++.+|.++ |+.+-.+...
T Consensus       457 G~l~AiD~~tGk~------~W~~~~------------~~p~~gg~lstagglVF~G~~dg~l~A~Da~T-Ge~LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVAQKA------AWSVEH------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG  517 (573)
T ss_dssp             EEEEEEETTTTEE------EEEEEE------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ccEEEeCCCCCce------EeeecC------------CCCCCCceEEEcCCEEEEECCCCeEEEEECCC-CcEeEEEECC
Confidence            5788889888874      233211            01122222334577888886 59999999997 8888887754


Q ss_pred             cC
Q 015290          369 EH  370 (409)
Q Consensus       369 ~~  370 (409)
                      ..
T Consensus       518 ~~  519 (573)
T d1kb0a2         518 TG  519 (573)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.01  E-value=6.6  Score=29.14  Aligned_cols=154  Identities=12%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (409)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      .|.++++   .+.....+|+......+|-++++++.+......-..+..+     .+.           ++...++...+
T Consensus       105 RI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI-----~~d-----------~I~G~g~~~g~  165 (313)
T d2hu7a1         105 RILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI-----RGD-----------LIAGLGFFGGG  165 (313)
T ss_dssp             EEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE-----ETT-----------EEEEEEEEETT
T ss_pred             EEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec-----cCC-----------eEEEEeeecCC
Confidence            5667776   5666777888888899999999988776554322211111     111           11111111111


Q ss_pred             e--eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--c--CCeEEEEEccCCCceeeeeecCCCcCcC-cc
Q 015290          195 A--TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDD-LT  267 (409)
Q Consensus       195 ~--i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~  267 (409)
                      .  ..+-|+..    .-++.+ ...++.++.....+..+. +++  .  .....-+|++  ......++++...+.. ..
T Consensus       166 ~~sfF~adl~S----G~lri~-tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~--s~~yerve~P~kd~~sy~p  237 (313)
T d2hu7a1         166 RVSLFTSNLSS----GGLRVF-DSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPR--DGSVEDLELPSKDFSSYRP  237 (313)
T ss_dssp             EEEEEEEETTT----EEEEEE-CCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTT--TCCEEECCCSSCHHHHHCC
T ss_pred             cceEEEEeccc----CCEEEe-cCCCCcccceeEccCcee-eeccCCCCceEEEEEecc--cCceeeeecCcccceeecc
Confidence            1  11112111    112222 445566777777776554 554  2  2233345766  2333333333222211 12


Q ss_pred             CceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (409)
Q Consensus       268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd  296 (409)
                      ..|+-+-+.|++ ++++.+-.||.=++|+
T Consensus       238 ~~I~~~~Y~Pdd-~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         238 TAITWLGYLPDG-RLAVVARREGRSAVFI  265 (313)
T ss_dssp             SEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred             eEEEeeeeCCCC-cEEEEEecCCchheee
Confidence            346667799999 9989999999999987

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.24  E-value=14  Score=32.25  Aligned_cols=49  Identities=16%  Similarity=0.014  Sum_probs=33.4

Q ss_pred             CCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEE
Q 015290          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT  401 (409)
Q Consensus       338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s  401 (409)
                      .+.++++|+ |+.++.+|.++ ++.+-.+........              .-+.|..||+ |++.
T Consensus       474 agglVf~G~~dg~l~A~Da~t-Ge~lW~~~l~~~~~a--------------~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKD-GKELWNFKMPSGGIG--------------SPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCC-CcEEEEEECCCCcee--------------cceEEEECCEEEEEE
Confidence            455777776 59999999997 888877765443321              1367777886 5544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=80.38  E-value=13  Score=30.03  Aligned_cols=133  Identities=11%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             eeEEEe--CCC-CCe-EEEe-cCCeEEEEEccCCCc-eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290          221 INSISN--NSD-CET-FVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (409)
Q Consensus       221 v~~l~~--~~~-~~~-l~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i  294 (409)
                      +..+++  ++. +.. ++.. .+|.+..|.+...+. .+....++  .+ .-...+..+.+++.. ..|+.+-.+.-|..
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr--~f-~~~~q~EGCVvDde~-~~LyisEE~~Giw~  205 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR--AF-KMNSQTEGMAADDEY-GSLYIAEEDEAIWK  205 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE--EE-ECSSCEEEEEEETTT-TEEEEEETTTEEEE
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee--cc-CCCCccceEEEeCCC-CcEEEecCccceEE
Confidence            444554  664 444 3445 789998887752221 11110011  01 123467899999988 78888877766655


Q ss_pred             EeCCCccccccccccccccccccCCcccccccccceeeeEec--cCCC-EEEEee--cCeEEEEEccCCCcceEEEec
Q 015290          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--NDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKI  367 (409)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~~~  367 (409)
                      ++........  ...... ..+       ......+..++.-  ++++ ||++.+  +++..+||.....+.+..|.-
T Consensus       206 ~~a~~~~~~~--~~~i~~-~~g-------~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         206 FSAEPDGGSN--GTVIDR-ADG-------RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             EESSTTSCSC--CEEEEE-CSS-------SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEeccCCCcc--ceeeec-ccC-------ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            5554221110  011111 000       0113456666643  2333 666554  499999998754567767653